Query 010449
Match_columns 510
No_of_seqs 196 out of 1460
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 00:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02461 Probable pyruvate kin 100.0 9E-141 2E-145 1126.1 59.4 510 1-510 1-511 (511)
2 PTZ00066 pyruvate kinase; Prov 100.0 5E-135 1E-139 1080.5 57.8 486 3-509 20-512 (513)
3 PLN02765 pyruvate kinase 100.0 3E-134 7E-139 1075.8 57.8 504 1-510 9-525 (526)
4 PLN02762 pyruvate kinase compl 100.0 6E-134 1E-138 1073.1 55.8 468 19-509 24-508 (509)
5 PRK09206 pyruvate kinase; Prov 100.0 1E-131 3E-136 1050.4 55.6 465 19-509 1-470 (470)
6 PRK06247 pyruvate kinase; Prov 100.0 1E-130 3E-135 1041.3 55.8 464 18-510 3-471 (476)
7 cd00288 Pyruvate_Kinase Pyruva 100.0 3E-129 7E-134 1037.8 56.5 474 19-509 1-480 (480)
8 COG0469 PykF Pyruvate kinase [ 100.0 1E-129 3E-134 1028.3 52.3 468 18-509 3-477 (477)
9 PRK06354 pyruvate kinase; Prov 100.0 1E-128 2E-133 1054.8 56.3 467 18-509 6-478 (590)
10 PRK05826 pyruvate kinase; Prov 100.0 3E-126 7E-131 1011.3 53.6 455 18-498 2-458 (465)
11 PLN02623 pyruvate kinase 100.0 5E-123 1E-127 996.1 54.9 464 18-509 108-579 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 1E-121 2E-126 971.1 53.9 447 46-509 1-453 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 1E-119 3E-124 967.8 53.6 465 20-506 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 2E-119 4E-124 945.8 47.8 487 7-509 7-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 6E-106 1E-110 834.1 31.6 344 19-365 1-348 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 6E-104 1E-108 812.5 38.1 330 21-359 2-332 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 1.7E-92 3.7E-97 759.6 39.1 339 7-358 129-596 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 4.4E-91 9.5E-96 744.2 38.3 338 8-358 124-479 (493)
19 PF02887 PK_C: Pyruvate kinase 99.9 2.8E-27 6.1E-32 209.3 14.0 112 379-508 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 1.9E-16 4.1E-21 157.8 11.1 133 189-336 68-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 2.3E-16 5E-21 157.8 9.9 133 189-336 75-241 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 9.8E-16 2.1E-20 153.9 10.0 131 191-336 76-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 2.8E-15 6.1E-20 144.8 10.6 135 187-336 71-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 1.4E-14 3.1E-19 144.5 10.3 129 193-336 72-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.4 1.1E-13 2.3E-18 135.6 6.4 102 193-296 73-189 (221)
26 TIGR01418 PEP_synth phosphoeno 99.3 6.8E-12 1.5E-16 143.3 11.9 150 188-357 609-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 9E-12 2E-16 142.3 11.8 150 189-358 617-790 (795)
28 TIGR01588 citE citrate lyase, 99.3 2.4E-11 5.3E-16 123.8 11.0 133 192-331 72-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.2 8.5E-11 1.8E-15 129.8 10.8 134 187-332 365-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.1 3E-10 6.4E-15 125.6 9.9 133 188-332 367-526 (575)
31 cd00727 malate_synt_A Malate s 98.8 1.3E-07 2.8E-12 102.4 16.7 243 10-332 57-345 (511)
32 TIGR01344 malate_syn_A malate 98.8 2.2E-07 4.7E-12 100.6 17.0 244 10-332 57-346 (511)
33 PRK09255 malate synthase; Vali 98.7 3.2E-07 6.9E-12 99.9 16.4 244 10-332 78-366 (531)
34 COG2301 CitE Citrate lyase bet 98.6 6E-08 1.3E-12 98.0 7.9 133 192-331 67-212 (283)
35 cd00480 malate_synt Malate syn 98.6 1.2E-06 2.6E-11 95.7 16.9 127 206-332 184-345 (511)
36 PLN02626 malate synthase 98.5 4.4E-06 9.6E-11 90.7 16.6 245 11-332 82-372 (551)
37 PF02896 PEP-utilizers_C: PEP- 98.4 9.2E-07 2E-11 90.4 8.7 135 188-334 119-280 (293)
38 PRK11061 fused phosphoenolpyru 97.4 0.00038 8.3E-09 79.9 8.4 147 188-355 532-706 (748)
39 COG1080 PtsA Phosphoenolpyruva 97.3 0.00085 1.8E-08 73.5 9.2 133 188-332 368-527 (574)
40 TIGR01828 pyru_phos_dikin pyru 97.2 0.0018 3.8E-08 75.4 10.7 135 188-333 670-851 (856)
41 PRK08649 inosine 5-monophospha 96.8 0.0093 2E-07 63.2 11.1 117 200-332 148-285 (368)
42 PRK09279 pyruvate phosphate di 96.4 0.014 3E-07 68.1 10.0 135 187-332 675-856 (879)
43 TIGR02751 PEPCase_arch phospho 96.3 0.015 3.3E-07 63.5 8.9 91 206-296 122-247 (506)
44 COG3605 PtsP Signal transducti 95.9 0.095 2.1E-06 57.8 12.6 153 188-357 540-719 (756)
45 PF00478 IMPDH: IMP dehydrogen 95.8 0.077 1.7E-06 55.8 11.0 124 192-332 107-240 (352)
46 cd00381 IMPDH IMPDH: The catal 95.7 0.12 2.5E-06 54.0 12.2 124 192-331 93-225 (325)
47 TIGR01304 IMP_DH_rel_2 IMP deh 95.7 0.057 1.2E-06 57.2 10.0 114 200-332 149-284 (369)
48 PRK13655 phosphoenolpyruvate c 95.7 0.036 7.8E-07 60.5 8.3 93 204-296 119-239 (494)
49 PRK00009 phosphoenolpyruvate c 94.9 0.13 2.7E-06 60.5 10.0 92 205-296 485-604 (911)
50 PTZ00314 inosine-5'-monophosph 94.4 0.4 8.6E-06 52.9 12.0 125 191-332 239-373 (495)
51 TIGR01302 IMP_dehydrog inosine 93.8 0.57 1.2E-05 51.0 11.8 125 191-332 222-356 (450)
52 TIGR01305 GMP_reduct_1 guanosi 93.8 0.83 1.8E-05 47.8 12.1 126 191-332 105-241 (343)
53 cd00958 DhnA Class I fructose- 93.7 1.6 3.6E-05 42.8 13.8 74 191-270 141-221 (235)
54 PTZ00398 phosphoenolpyruvate c 93.6 0.3 6.5E-06 57.9 9.6 106 207-312 546-677 (974)
55 PLN02274 inosine-5'-monophosph 93.5 0.63 1.4E-05 51.5 11.5 122 191-332 246-380 (505)
56 COG0574 PpsA Phosphoenolpyruva 93.3 0.28 6E-06 56.8 8.6 113 209-333 597-724 (740)
57 PRK05096 guanosine 5'-monophos 92.9 1.2 2.6E-05 46.7 11.7 126 191-332 106-242 (346)
58 cd03174 DRE_TIM_metallolyase D 92.9 4.8 0.0001 39.9 15.8 197 189-405 15-225 (265)
59 TIGR03151 enACPred_II putative 92.9 1.4 3E-05 45.6 12.2 112 196-332 78-190 (307)
60 PRK07807 inosine 5-monophospha 92.8 0.89 1.9E-05 50.0 11.3 127 189-332 223-359 (479)
61 PRK13125 trpA tryptophan synth 92.4 3.7 8E-05 40.9 14.2 113 200-332 95-214 (244)
62 PRK06843 inosine 5-monophospha 92.3 1.6 3.5E-05 46.9 12.1 125 191-332 151-285 (404)
63 TIGR01306 GMP_reduct_2 guanosi 92.0 1.3 2.7E-05 46.3 10.7 126 190-332 91-227 (321)
64 TIGR01949 AroFGH_arch predicte 92.0 3.3 7.1E-05 41.6 13.4 67 200-269 163-233 (258)
65 TIGR01361 DAHP_synth_Bsub phos 91.9 1.8 3.8E-05 43.9 11.4 91 218-332 75-166 (260)
66 PRK13397 3-deoxy-7-phosphohept 91.9 1.7 3.8E-05 43.7 11.1 90 220-333 67-157 (250)
67 cd07944 DRE_TIM_HOA_like 4-hyd 91.9 7.3 0.00016 39.4 15.8 149 190-355 17-180 (266)
68 PRK13398 3-deoxy-7-phosphohept 91.8 3.8 8.3E-05 41.6 13.7 149 218-403 77-233 (266)
69 PRK07107 inosine 5-monophospha 91.6 1.3 2.8E-05 49.0 10.8 120 195-332 244-381 (502)
70 TIGR02090 LEU1_arch isopropylm 91.3 8 0.00017 41.0 16.0 155 189-354 18-182 (363)
71 cd07939 DRE_TIM_NifV Streptomy 91.3 9.9 0.00022 38.1 16.1 156 189-355 16-181 (259)
72 cd04730 NPD_like 2-Nitropropan 91.3 3 6.4E-05 40.8 12.0 113 196-332 71-185 (236)
73 PRK11858 aksA trans-homoaconit 91.2 12 0.00026 39.9 17.2 157 189-355 22-187 (378)
74 PRK07565 dihydroorotate dehydr 91.0 3.3 7.1E-05 43.3 12.6 146 194-359 115-290 (334)
75 PF00311 PEPcase: Phosphoenolp 90.7 0.77 1.7E-05 53.5 8.2 91 206-296 363-481 (794)
76 cd00429 RPE Ribulose-5-phospha 90.3 3.5 7.6E-05 39.3 11.3 132 200-348 74-210 (211)
77 PRK12595 bifunctional 3-deoxy- 90.3 4.2 9.1E-05 43.1 12.7 90 219-332 169-259 (360)
78 PRK00915 2-isopropylmalate syn 90.2 20 0.00044 39.8 18.6 157 189-355 22-191 (513)
79 cd04740 DHOD_1B_like Dihydroor 90.2 7.7 0.00017 39.5 14.3 128 192-334 101-262 (296)
80 PRK05458 guanosine 5'-monophos 89.8 4.8 0.0001 42.1 12.5 127 191-333 95-231 (326)
81 cd07945 DRE_TIM_CMS Leptospira 89.7 8 0.00017 39.5 13.9 207 174-406 5-227 (280)
82 cd04726 KGPDC_HPS 3-Keto-L-gul 89.6 6.3 0.00014 37.5 12.4 126 200-346 71-200 (202)
83 PRK05567 inosine 5'-monophosph 89.4 3.7 8E-05 45.2 12.0 122 194-332 229-360 (486)
84 PRK13813 orotidine 5'-phosphat 89.3 1.6 3.4E-05 42.4 8.1 131 201-354 75-214 (215)
85 cd00958 DhnA Class I fructose- 89.2 12 0.00025 36.8 14.3 130 188-333 16-164 (235)
86 PF14010 PEPcase_2: Phosphoeno 89.2 0.65 1.4E-05 50.7 5.7 90 205-294 119-243 (491)
87 PRK02290 3-dehydroquinate synt 89.1 4.9 0.00011 42.2 11.8 119 192-335 13-147 (344)
88 TIGR00973 leuA_bact 2-isopropy 88.9 13 0.00029 41.1 15.8 159 189-355 19-188 (494)
89 PRK01130 N-acetylmannosamine-6 88.7 5.7 0.00012 38.7 11.6 119 196-334 79-204 (221)
90 cd02940 DHPD_FMN Dihydropyrimi 88.7 4.6 0.0001 41.5 11.4 127 193-334 113-283 (299)
91 PRK08318 dihydropyrimidine deh 88.3 4.5 9.7E-05 43.6 11.5 146 193-358 113-303 (420)
92 TIGR01163 rpe ribulose-phospha 88.2 6.9 0.00015 37.3 11.7 130 200-346 73-207 (210)
93 PLN02591 tryptophan synthase 88.1 7.2 0.00016 39.3 12.1 116 200-332 100-218 (250)
94 cd02810 DHOD_DHPD_FMN Dihydroo 88.1 6.8 0.00015 39.7 12.1 128 192-332 110-272 (289)
95 PRK07226 fructose-bisphosphate 88.1 19 0.00041 36.4 15.2 98 188-296 34-144 (267)
96 CHL00200 trpA tryptophan synth 88.0 6.4 0.00014 39.9 11.7 115 200-332 113-231 (263)
97 PTZ00170 D-ribulose-5-phosphat 88.0 3.4 7.4E-05 40.8 9.5 136 200-354 82-223 (228)
98 cd04722 TIM_phosphate_binding 88.0 6.3 0.00014 36.2 10.9 115 200-332 78-199 (200)
99 PRK09389 (R)-citramalate synth 87.8 23 0.00049 39.2 16.7 154 190-353 21-183 (488)
100 cd07948 DRE_TIM_HCS Saccharomy 87.7 33 0.00073 34.6 16.6 204 173-405 7-219 (262)
101 PRK05581 ribulose-phosphate 3- 87.6 14 0.00031 35.6 13.5 136 200-351 78-217 (220)
102 TIGR01303 IMP_DH_rel_1 IMP deh 87.6 8 0.00017 42.6 12.9 124 190-332 222-357 (475)
103 PRK00286 xseA exodeoxyribonucl 87.5 7.6 0.00016 42.1 12.7 193 63-297 10-230 (438)
104 PRK13307 bifunctional formalde 87.4 6.3 0.00014 42.3 11.7 130 200-352 244-378 (391)
105 PRK07695 transcriptional regul 87.3 8 0.00017 37.1 11.5 127 201-353 68-198 (201)
106 PF01959 DHQS: 3-dehydroquinat 87.3 2.8 6.1E-05 44.1 8.7 133 195-354 15-169 (354)
107 PRK05692 hydroxymethylglutaryl 87.2 19 0.00041 36.9 14.8 204 175-405 13-234 (287)
108 PRK13396 3-deoxy-7-phosphohept 87.2 10 0.00022 40.1 13.0 103 219-345 152-258 (352)
109 TIGR00977 LeuA_rel 2-isopropyl 87.2 12 0.00025 41.9 14.1 172 175-356 10-197 (526)
110 TIGR02660 nifV_homocitr homoci 87.1 15 0.00032 39.0 14.3 156 189-355 19-184 (365)
111 COG2352 Ppc Phosphoenolpyruvat 87.0 1.6 3.6E-05 50.2 7.3 85 210-294 489-599 (910)
112 PRK08227 autoinducer 2 aldolas 86.6 8.8 0.00019 39.0 11.7 145 250-423 48-198 (264)
113 cd00640 Trp-synth-beta_II Tryp 86.4 15 0.00033 36.0 13.2 116 282-423 64-186 (244)
114 PRK09722 allulose-6-phosphate 86.4 17 0.00038 36.1 13.4 140 202-355 78-222 (229)
115 cd00945 Aldolase_Class_I Class 85.9 18 0.00039 33.6 13.0 126 191-332 11-149 (201)
116 PF00682 HMGL-like: HMGL-like 85.8 22 0.00047 34.8 13.9 193 190-404 11-215 (237)
117 PLN02334 ribulose-phosphate 3- 85.7 19 0.00042 35.3 13.5 138 200-355 82-225 (229)
118 PRK08673 3-deoxy-7-phosphohept 85.2 15 0.00033 38.6 13.0 106 218-347 143-251 (335)
119 PRK02048 4-hydroxy-3-methylbut 84.8 16 0.00036 41.0 13.5 152 192-352 41-223 (611)
120 PRK08745 ribulose-phosphate 3- 84.2 19 0.00041 35.6 12.5 135 203-354 82-221 (223)
121 PF01791 DeoC: DeoC/LacD famil 84.1 6.3 0.00014 38.9 9.2 152 189-356 14-189 (236)
122 cd04729 NanE N-acetylmannosami 84.1 6.6 0.00014 38.2 9.3 117 196-332 83-206 (219)
123 PRK08883 ribulose-phosphate 3- 84.0 21 0.00045 35.2 12.8 132 202-353 77-216 (220)
124 PLN02746 hydroxymethylglutaryl 83.9 17 0.00038 38.3 12.8 203 175-405 55-276 (347)
125 PRK15447 putative protease; Pr 83.8 7.6 0.00016 40.1 10.0 118 193-336 15-142 (301)
126 cd04739 DHOD_like Dihydroorota 83.4 19 0.00041 37.6 12.8 147 193-360 112-289 (325)
127 cd07938 DRE_TIM_HMGL 3-hydroxy 83.2 46 0.001 33.8 15.3 170 175-354 7-190 (274)
128 PLN02321 2-isopropylmalate syn 83.2 34 0.00074 39.1 15.5 159 190-355 105-282 (632)
129 PRK07226 fructose-bisphosphate 82.7 31 0.00067 34.8 13.7 67 200-269 167-237 (267)
130 TIGR00126 deoC deoxyribose-pho 82.3 22 0.00048 34.8 12.1 146 188-353 13-173 (211)
131 PRK00694 4-hydroxy-3-methylbut 82.2 4.9 0.00011 44.8 8.1 154 192-357 45-229 (606)
132 PTZ00005 phosphoglycerate kina 82.2 16 0.00035 39.5 11.9 173 219-418 192-387 (417)
133 PF00478 IMPDH: IMP dehydrogen 81.9 2.8 6.1E-05 44.2 6.0 52 19-70 94-145 (352)
134 PRK07028 bifunctional hexulose 81.9 21 0.00045 38.6 12.8 137 197-353 73-211 (430)
135 COG0826 Collagenase and relate 81.7 14 0.0003 39.0 11.1 128 193-355 14-159 (347)
136 cd00959 DeoC 2-deoxyribose-5-p 81.4 16 0.00034 35.3 10.7 144 188-353 12-172 (203)
137 PRK04302 triosephosphate isome 81.4 16 0.00036 35.7 10.9 132 200-348 79-218 (223)
138 PRK06852 aldolase; Validated 81.2 15 0.00033 38.1 10.9 111 309-423 112-236 (304)
139 PRK06512 thiamine-phosphate py 81.1 17 0.00037 35.8 10.9 131 200-353 81-213 (221)
140 cd00452 KDPG_aldolase KDPG and 80.8 37 0.0008 32.3 12.9 108 192-332 15-124 (190)
141 TIGR03128 RuMP_HxlA 3-hexulose 80.7 40 0.00086 32.2 13.2 136 197-351 68-205 (206)
142 PF04551 GcpE: GcpE protein; 80.7 4.9 0.00011 42.4 7.1 137 195-336 34-184 (359)
143 cd00331 IGPS Indole-3-glycerol 80.5 20 0.00044 34.6 11.2 124 200-346 88-215 (217)
144 PF01274 Malate_synthase: Mala 80.3 6 0.00013 44.0 8.1 125 206-332 203-364 (526)
145 PLN03034 phosphoglycerate kina 80.1 11 0.00023 41.5 9.7 311 35-423 121-451 (481)
146 PRK07259 dihydroorotate dehydr 80.0 21 0.00045 36.5 11.6 145 192-357 103-282 (301)
147 PRK12344 putative alpha-isopro 79.9 96 0.0021 34.7 17.4 163 189-355 23-200 (524)
148 TIGR01949 AroFGH_arch predicte 79.8 27 0.00058 35.0 12.0 133 188-332 31-176 (258)
149 cd04732 HisA HisA. Phosphorib 79.4 23 0.00049 34.5 11.2 128 195-342 85-229 (234)
150 PF03060 NMO: Nitronate monoox 79.4 17 0.00038 37.8 10.9 111 197-332 105-219 (330)
151 COG1465 Predicted alternative 79.3 33 0.00072 35.4 12.2 129 200-357 22-194 (376)
152 PRK00043 thiE thiamine-phospha 79.2 19 0.00041 34.3 10.4 129 200-355 75-211 (212)
153 cd07940 DRE_TIM_IPMS 2-isoprop 79.2 74 0.0016 32.0 16.2 159 189-355 16-185 (268)
154 PRK08195 4-hyroxy-2-oxovalerat 79.2 52 0.0011 34.6 14.4 144 190-355 22-186 (337)
155 cd07941 DRE_TIM_LeuA3 Desulfob 78.9 77 0.0017 32.1 17.3 161 189-354 16-192 (273)
156 PRK08227 autoinducer 2 aldolas 78.7 5.3 0.00011 40.6 6.5 137 200-354 101-248 (264)
157 TIGR00262 trpA tryptophan synt 78.6 22 0.00047 35.9 10.9 115 200-332 109-227 (256)
158 cd00945 Aldolase_Class_I Class 77.7 48 0.001 30.7 12.5 104 311-423 64-178 (201)
159 cd00331 IGPS Indole-3-glycerol 77.6 70 0.0015 30.9 13.9 113 191-334 29-150 (217)
160 KOG2550 IMP dehydrogenase/GMP 77.5 10 0.00022 40.8 8.2 126 191-332 249-383 (503)
161 PLN02282 phosphoglycerate kina 76.9 31 0.00068 37.2 12.0 310 35-423 46-376 (401)
162 PF03102 NeuB: NeuB family; I 76.2 21 0.00045 35.8 9.8 100 217-342 54-154 (241)
163 cd00405 PRAI Phosphoribosylant 76.1 35 0.00076 32.7 11.3 118 194-338 61-189 (203)
164 PRK00507 deoxyribose-phosphate 75.9 47 0.001 32.8 12.2 150 188-352 17-176 (221)
165 PLN02925 4-hydroxy-3-methylbut 75.7 44 0.00095 38.4 13.1 154 192-357 110-294 (733)
166 PRK13210 putative L-xylulose 5 75.7 37 0.00079 33.8 11.7 131 197-335 21-183 (284)
167 cd00381 IMPDH IMPDH: The catal 75.2 5.6 0.00012 41.5 5.8 49 23-71 84-132 (325)
168 cd04728 ThiG Thiazole synthase 75.1 68 0.0015 32.4 13.0 82 257-354 145-226 (248)
169 PRK00278 trpC indole-3-glycero 74.8 45 0.00097 33.7 12.0 110 194-334 71-189 (260)
170 TIGR01037 pyrD_sub1_fam dihydr 74.0 1.1E+02 0.0023 31.2 14.8 131 206-357 118-282 (300)
171 PRK00208 thiG thiazole synthas 73.9 75 0.0016 32.1 13.0 82 257-354 145-226 (250)
172 COG1751 Uncharacterized conser 73.9 11 0.00024 35.2 6.6 47 377-423 10-57 (186)
173 cd04726 KGPDC_HPS 3-Keto-L-gul 73.8 31 0.00067 32.7 10.2 117 190-332 10-133 (202)
174 TIGR00612 ispG_gcpE 1-hydroxy- 73.5 24 0.00053 37.0 9.7 142 195-351 37-187 (346)
175 cd00405 PRAI Phosphoribosylant 73.1 29 0.00064 33.2 9.9 116 194-336 8-131 (203)
176 PRK14045 1-aminocyclopropane-1 73.1 1.1E+02 0.0024 31.8 14.8 42 382-423 167-217 (329)
177 cd04724 Tryptophan_synthase_al 73.1 65 0.0014 32.0 12.6 92 195-297 17-135 (242)
178 PF03437 BtpA: BtpA family; I 72.5 13 0.00029 37.5 7.5 72 204-282 170-251 (254)
179 cd01561 CBS_like CBS_like: Thi 72.3 77 0.0017 32.1 13.2 120 282-423 67-193 (291)
180 cd02809 alpha_hydroxyacid_oxid 72.3 28 0.00061 35.7 10.1 109 200-333 136-257 (299)
181 PRK05718 keto-hydroxyglutarate 72.3 58 0.0013 32.0 11.7 107 210-331 18-134 (212)
182 TIGR01138 cysM cysteine syntha 72.1 69 0.0015 32.6 12.9 118 282-423 73-196 (290)
183 PRK06381 threonine synthase; V 71.5 69 0.0015 32.9 12.8 117 282-423 77-205 (319)
184 PF00290 Trp_syntA: Tryptophan 71.5 29 0.00063 35.2 9.7 116 200-332 109-226 (259)
185 cd04742 NPD_FabD 2-Nitropropan 71.3 47 0.001 36.1 11.7 123 196-332 86-248 (418)
186 TIGR01163 rpe ribulose-phospha 71.3 95 0.0021 29.4 13.6 132 196-352 15-156 (210)
187 cd00564 TMP_TenI Thiamine mono 70.4 62 0.0013 29.9 11.3 121 200-348 66-194 (196)
188 TIGR03217 4OH_2_O_val_ald 4-hy 70.4 1.1E+02 0.0025 32.0 14.2 145 189-355 20-185 (333)
189 TIGR01305 GMP_reduct_1 guanosi 70.1 6.1 0.00013 41.5 4.5 48 23-70 97-146 (343)
190 PRK12483 threonine dehydratase 70.1 79 0.0017 35.3 13.5 151 235-423 52-219 (521)
191 TIGR01139 cysK cysteine syntha 69.7 49 0.0011 33.7 11.2 119 282-423 71-196 (298)
192 cd04727 pdxS PdxS is a subunit 69.4 83 0.0018 32.3 12.3 116 214-361 50-167 (283)
193 PRK15452 putative protease; Pr 69.3 30 0.00066 37.8 9.9 84 235-332 4-96 (443)
194 PRK15452 putative protease; Pr 69.2 60 0.0013 35.5 12.2 42 33-74 269-310 (443)
195 PLN02970 serine racemase 69.2 93 0.002 32.3 13.3 115 282-423 89-208 (328)
196 cd00954 NAL N-Acetylneuraminic 69.2 27 0.00059 35.5 9.1 97 197-297 25-134 (288)
197 PRK05581 ribulose-phosphate 3- 68.9 86 0.0019 30.0 12.2 128 196-351 20-160 (220)
198 PRK06552 keto-hydroxyglutarate 68.8 68 0.0015 31.5 11.4 104 210-331 16-135 (213)
199 TIGR00007 phosphoribosylformim 68.8 35 0.00075 33.3 9.5 127 193-341 82-227 (230)
200 PRK05096 guanosine 5'-monophos 68.7 10 0.00022 39.9 5.8 48 23-70 98-147 (346)
201 TIGR00674 dapA dihydrodipicoli 68.5 32 0.0007 34.9 9.5 98 196-297 22-130 (285)
202 PRK03620 5-dehydro-4-deoxygluc 68.5 29 0.00064 35.6 9.2 97 197-297 32-138 (303)
203 TIGR00237 xseA exodeoxyribonuc 68.1 24 0.00053 38.3 8.9 141 128-297 57-225 (432)
204 cd01562 Thr-dehyd Threonine de 68.1 94 0.002 31.4 12.8 115 282-423 79-198 (304)
205 PRK10717 cysteine synthase A; 68.0 54 0.0012 34.0 11.2 122 282-423 78-209 (330)
206 TIGR01302 IMP_dehydrog inosine 67.9 9.1 0.0002 41.7 5.6 50 21-70 212-261 (450)
207 cd00377 ICL_PEPM Members of th 67.9 28 0.0006 34.8 8.7 109 200-332 91-226 (243)
208 PRK07334 threonine dehydratase 67.9 56 0.0012 35.0 11.6 115 282-423 85-204 (403)
209 COG0274 DeoC Deoxyribose-phosp 67.6 63 0.0014 32.2 10.7 150 188-352 19-180 (228)
210 cd04737 LOX_like_FMN L-Lactate 67.4 28 0.0006 36.9 8.9 87 217-332 209-305 (351)
211 COG0119 LeuA Isopropylmalate/h 67.4 1.1E+02 0.0025 33.0 13.7 159 189-356 20-189 (409)
212 cd07943 DRE_TIM_HOA 4-hydroxy- 67.0 1.3E+02 0.0028 30.2 13.3 147 190-355 19-183 (263)
213 COG0826 Collagenase and relate 66.1 23 0.00049 37.5 7.9 79 247-332 16-99 (347)
214 TIGR03586 PseI pseudaminic aci 66.0 62 0.0014 33.9 11.1 55 257-331 111-166 (327)
215 TIGR00343 pyridoxal 5'-phospha 66.0 1.7E+02 0.0036 30.2 14.8 114 213-358 51-166 (287)
216 PRK07315 fructose-bisphosphate 65.8 54 0.0012 33.8 10.5 103 234-342 77-183 (293)
217 cd00954 NAL N-Acetylneuraminic 65.8 61 0.0013 33.0 10.9 95 250-355 27-126 (288)
218 PRK04180 pyridoxal biosynthesi 65.7 1.1E+02 0.0023 31.7 12.3 118 212-361 57-176 (293)
219 PRK07028 bifunctional hexulose 65.6 85 0.0018 33.9 12.5 131 181-332 4-138 (430)
220 PRK08385 nicotinate-nucleotide 65.5 9.1 0.0002 39.2 4.7 65 195-263 192-259 (278)
221 PRK15447 putative protease; Pr 65.2 29 0.00062 35.8 8.4 68 256-332 28-95 (301)
222 PRK13209 L-xylulose 5-phosphat 65.2 95 0.002 31.0 12.1 35 200-234 28-72 (283)
223 PRK08638 threonine dehydratase 64.9 1.1E+02 0.0025 31.8 12.9 115 282-423 89-208 (333)
224 TIGR02814 pfaD_fam PfaD family 64.8 77 0.0017 34.7 11.8 122 196-332 91-253 (444)
225 PRK06015 keto-hydroxyglutarate 64.7 1.2E+02 0.0025 29.7 12.0 101 214-332 11-124 (201)
226 cd00408 DHDPS-like Dihydrodipi 64.6 39 0.00085 34.0 9.1 94 200-297 25-129 (281)
227 TIGR00736 nifR3_rel_arch TIM-b 64.5 1.2E+02 0.0026 30.2 12.3 121 191-333 78-221 (231)
228 PRK05283 deoxyribose-phosphate 64.5 90 0.002 31.7 11.5 149 188-354 21-189 (257)
229 TIGR01137 cysta_beta cystathio 63.8 1.1E+02 0.0024 33.0 13.0 122 282-423 76-203 (454)
230 PRK00278 trpC indole-3-glycero 63.8 1.1E+02 0.0023 30.9 12.0 128 200-348 127-256 (260)
231 PRK07428 nicotinate-nucleotide 63.6 18 0.00038 37.3 6.4 65 194-264 205-272 (288)
232 TIGR01136 cysKM cysteine synth 63.4 1.3E+02 0.0028 30.6 12.8 118 282-423 72-196 (299)
233 TIGR02708 L_lactate_ox L-lacta 63.4 37 0.00081 36.2 8.9 88 217-333 216-313 (367)
234 PRK09250 fructose-bisphosphate 63.4 1.1E+02 0.0023 32.6 12.1 96 192-296 90-197 (348)
235 cd00950 DHDPS Dihydrodipicolin 63.2 40 0.00087 34.0 8.9 94 200-297 28-132 (284)
236 TIGR01182 eda Entner-Doudoroff 63.1 1.2E+02 0.0026 29.6 11.8 39 280-332 90-128 (204)
237 PRK09250 fructose-bisphosphate 62.5 52 0.0011 34.8 9.7 170 210-398 38-234 (348)
238 PTZ00314 inosine-5'-monophosph 62.4 10 0.00022 42.0 4.7 45 26-70 234-278 (495)
239 PLN03228 methylthioalkylmalate 62.2 2.6E+02 0.0057 31.2 16.2 168 175-354 93-280 (503)
240 PLN02565 cysteine synthase 61.7 75 0.0016 33.1 10.8 118 283-423 82-205 (322)
241 cd00408 DHDPS-like Dihydrodipi 60.7 84 0.0018 31.5 10.8 89 257-356 32-123 (281)
242 TIGR02320 PEP_mutase phosphoen 60.5 40 0.00087 34.6 8.4 64 200-263 99-189 (285)
243 TIGR03128 RuMP_HxlA 3-hexulose 60.5 1.4E+02 0.003 28.4 11.8 119 189-332 8-133 (206)
244 cd02803 OYE_like_FMN_family Ol 60.5 92 0.002 32.0 11.2 129 189-332 130-311 (327)
245 PRK06843 inosine 5-monophospha 60.4 14 0.00031 39.8 5.2 50 21-70 141-190 (404)
246 PRK05458 guanosine 5'-monophos 60.2 15 0.00032 38.5 5.2 45 26-70 90-136 (326)
247 TIGR03569 NeuB_NnaB N-acetylne 60.2 81 0.0018 33.1 10.7 51 257-327 110-161 (329)
248 PF00899 ThiF: ThiF family; I 59.9 25 0.00054 31.3 6.1 68 220-298 57-124 (135)
249 TIGR00693 thiE thiamine-phosph 59.9 1.1E+02 0.0023 28.9 10.7 121 200-347 67-195 (196)
250 PF01136 Peptidase_U32: Peptid 59.9 18 0.00038 35.4 5.5 42 33-74 157-198 (233)
251 TIGR01859 fruc_bis_ald_ fructo 59.8 99 0.0021 31.7 11.1 103 235-341 75-182 (282)
252 cd02811 IDI-2_FMN Isopentenyl- 59.7 1.9E+02 0.0041 30.2 13.3 31 291-333 255-285 (326)
253 KOG3974 Predicted sugar kinase 59.4 55 0.0012 33.4 8.7 85 202-296 53-137 (306)
254 cd04732 HisA HisA. Phosphorib 59.1 65 0.0014 31.3 9.4 148 194-354 30-188 (234)
255 TIGR01037 pyrD_sub1_fam dihydr 58.9 2.1E+02 0.0045 29.1 13.4 88 234-333 90-190 (300)
256 PRK05848 nicotinate-nucleotide 58.8 27 0.00059 35.6 6.8 63 195-263 192-257 (273)
257 PRK13111 trpA tryptophan synth 58.5 46 0.001 33.6 8.3 114 200-332 111-228 (258)
258 PRK11840 bifunctional sulfur c 58.5 1.5E+02 0.0032 31.2 12.0 75 264-354 226-300 (326)
259 PLN03013 cysteine synthase 58.4 1.3E+02 0.0028 32.9 12.1 118 283-423 190-313 (429)
260 PRK14057 epimerase; Provisiona 58.3 1.7E+02 0.0037 29.6 12.2 131 203-353 95-242 (254)
261 cd07937 DRE_TIM_PC_TC_5S Pyruv 58.2 2.1E+02 0.0045 29.0 13.1 153 189-355 17-191 (275)
262 TIGR01127 ilvA_1Cterm threonin 58.2 1.6E+02 0.0035 31.1 12.8 115 282-423 62-181 (380)
263 PRK02083 imidazole glycerol ph 58.1 1.8E+02 0.004 28.8 12.5 129 195-345 86-240 (253)
264 TIGR00674 dapA dihydrodipicoli 58.1 91 0.002 31.6 10.5 97 251-357 26-125 (285)
265 TIGR01306 GMP_reduct_2 guanosi 58.0 20 0.00043 37.6 5.6 48 23-70 84-133 (321)
266 PRK09224 threonine dehydratase 57.6 1.8E+02 0.0038 32.4 13.4 115 282-423 82-202 (504)
267 PRK07476 eutB threonine dehydr 57.5 1.9E+02 0.0041 29.8 13.0 115 282-423 81-200 (322)
268 PLN02417 dihydrodipicolinate s 57.4 53 0.0012 33.3 8.7 95 197-297 26-131 (280)
269 PRK05286 dihydroorotate dehydr 57.2 57 0.0012 34.2 9.1 117 206-334 169-320 (344)
270 PLN02274 inosine-5'-monophosph 57.2 30 0.00065 38.5 7.2 51 20-70 235-285 (505)
271 PRK08091 ribulose-phosphate 3- 57.2 1.9E+02 0.0042 28.8 12.2 129 202-350 87-225 (228)
272 PF05690 ThiG: Thiazole biosyn 57.0 52 0.0011 33.0 8.0 83 257-355 145-227 (247)
273 PRK06382 threonine dehydratase 57.0 1.5E+02 0.0032 31.9 12.3 114 283-423 88-206 (406)
274 TIGR00259 thylakoid_BtpA membr 56.4 97 0.0021 31.4 10.1 113 196-332 93-227 (257)
275 cd02801 DUS_like_FMN Dihydrour 56.3 1.8E+02 0.0038 28.0 11.9 124 192-332 66-213 (231)
276 cd04729 NanE N-acetylmannosami 56.3 1.9E+02 0.0042 27.9 12.1 112 194-332 28-150 (219)
277 KOG3111 D-ribulose-5-phosphate 56.3 1.7E+02 0.0037 28.6 11.1 133 203-355 84-220 (224)
278 COG0434 SgcQ Predicted TIM-bar 56.2 49 0.0011 33.2 7.7 93 316-419 38-143 (263)
279 PRK08639 threonine dehydratase 56.2 1.9E+02 0.0041 31.2 13.1 116 282-423 87-212 (420)
280 COG0031 CysK Cysteine synthase 55.8 2.6E+02 0.0056 29.1 15.7 119 284-423 78-202 (300)
281 PLN00011 cysteine synthase 55.7 2.5E+02 0.0054 29.1 13.5 119 282-423 83-207 (323)
282 TIGR00259 thylakoid_BtpA membr 55.6 52 0.0011 33.4 8.0 91 190-283 154-252 (257)
283 cd02808 GltS_FMN Glutamate syn 55.6 1.1E+02 0.0025 32.7 11.2 119 201-332 178-314 (392)
284 PRK09856 fructoselysine 3-epim 55.5 1.8E+02 0.004 28.7 12.1 119 200-323 20-172 (275)
285 PRK03170 dihydrodipicolinate s 55.5 54 0.0012 33.3 8.4 97 197-297 26-133 (292)
286 PRK06815 hypothetical protein; 55.3 1.6E+02 0.0035 30.3 12.0 115 282-423 82-201 (317)
287 PRK07709 fructose-bisphosphate 55.0 1.4E+02 0.0029 30.8 11.1 100 235-341 78-185 (285)
288 PLN02495 oxidoreductase, actin 55.0 1.3E+02 0.0028 32.4 11.3 49 277-335 167-217 (385)
289 PF07521 RMMBL: RNA-metabolisi 54.8 7.4 0.00016 28.2 1.4 24 46-69 7-31 (43)
290 PRK06806 fructose-bisphosphate 54.8 34 0.00074 35.0 6.7 56 23-79 76-131 (281)
291 cd00951 KDGDH 5-dehydro-4-deox 54.5 84 0.0018 32.0 9.6 97 195-297 23-131 (289)
292 cd01492 Aos1_SUMO Ubiquitin ac 54.4 56 0.0012 31.5 7.8 65 221-297 77-141 (197)
293 PRK04147 N-acetylneuraminate l 54.2 1E+02 0.0023 31.3 10.2 99 195-297 26-136 (293)
294 cd00959 DeoC 2-deoxyribose-5-p 54.1 53 0.0011 31.7 7.6 104 308-423 65-180 (203)
295 PF00701 DHDPS: Dihydrodipicol 53.7 1.1E+02 0.0024 31.0 10.3 98 249-357 27-128 (289)
296 cd01485 E1-1_like Ubiquitin ac 53.6 50 0.0011 31.8 7.4 68 220-297 76-144 (198)
297 PRK13585 1-(5-phosphoribosyl)- 53.3 1.7E+02 0.0036 28.6 11.2 126 194-341 87-231 (241)
298 PRK08198 threonine dehydratase 53.3 2.6E+02 0.0056 29.8 13.5 115 282-423 84-203 (404)
299 cd00429 RPE Ribulose-5-phospha 52.9 2E+02 0.0044 27.0 14.6 127 200-353 19-158 (211)
300 PRK09140 2-dehydro-3-deoxy-6-p 52.8 1.4E+02 0.003 29.1 10.3 110 191-331 20-130 (206)
301 PF00582 Usp: Universal stress 52.7 38 0.00083 28.5 5.9 43 380-423 88-139 (140)
302 PRK07998 gatY putative fructos 52.6 74 0.0016 32.7 8.7 101 234-341 74-182 (283)
303 PRK07084 fructose-bisphosphate 52.6 1.5E+02 0.0033 31.1 11.1 131 221-355 72-215 (321)
304 PRK00073 pgk phosphoglycerate 52.5 1.1E+02 0.0025 32.8 10.4 302 35-423 39-365 (389)
305 PRK11761 cysM cysteine synthas 52.3 1.7E+02 0.0038 29.8 11.5 118 282-423 77-200 (296)
306 TIGR02356 adenyl_thiF thiazole 52.3 50 0.0011 31.8 7.1 67 220-297 76-142 (202)
307 cd00952 CHBPH_aldolase Trans-o 52.0 91 0.002 32.2 9.4 94 200-297 36-141 (309)
308 cd04723 HisA_HisF Phosphoribos 51.9 1.3E+02 0.0027 29.8 10.1 129 194-344 89-230 (233)
309 PRK15005 universal stress prot 51.6 35 0.00076 30.0 5.6 41 382-423 95-143 (144)
310 cd03316 MR_like Mandelate race 51.5 91 0.002 32.5 9.5 64 20-86 125-197 (357)
311 PRK02615 thiamine-phosphate py 51.4 2.1E+02 0.0044 30.4 12.0 122 201-353 212-343 (347)
312 cd04738 DHOD_2_like Dihydrooro 51.4 81 0.0017 32.8 9.0 116 206-333 160-310 (327)
313 KOG2550 IMP dehydrogenase/GMP 51.4 25 0.00055 37.9 5.2 45 26-70 244-288 (503)
314 PLN02550 threonine dehydratase 51.3 2.4E+02 0.0053 32.1 13.2 115 282-423 171-291 (591)
315 PRK05638 threonine synthase; V 51.3 1E+02 0.0023 33.4 10.2 105 282-413 126-230 (442)
316 PRK05742 nicotinate-nucleotide 50.8 47 0.001 34.0 6.9 63 193-264 197-262 (277)
317 COG3010 NanE Putative N-acetyl 50.5 93 0.002 30.7 8.4 145 245-459 53-210 (229)
318 PF00834 Ribul_P_3_epim: Ribul 50.3 39 0.00086 32.8 6.1 113 201-332 75-194 (201)
319 TIGR03528 2_3_DAP_am_ly diamin 50.3 1.9E+02 0.0042 31.0 11.9 118 282-423 127-260 (396)
320 PRK08417 dihydroorotase; Provi 50.2 3.4E+02 0.0073 28.8 17.9 188 178-426 27-228 (386)
321 cd01573 modD_like ModD; Quinol 50.1 47 0.001 33.8 6.8 62 196-263 194-258 (272)
322 PRK00366 ispG 4-hydroxy-3-meth 49.7 1.2E+02 0.0026 32.2 9.8 142 194-351 44-196 (360)
323 PRK08526 threonine dehydratase 49.6 2.5E+02 0.0054 30.2 12.6 115 282-423 82-201 (403)
324 COG1646 Predicted phosphate-bi 49.6 34 0.00075 34.1 5.5 172 238-448 19-211 (240)
325 TIGR00736 nifR3_rel_arch TIM-b 49.3 36 0.00077 33.9 5.7 75 194-272 149-229 (231)
326 cd02940 DHPD_FMN Dihydropyrimi 49.3 1.6E+02 0.0036 30.0 10.8 47 277-333 153-201 (299)
327 PRK07896 nicotinate-nucleotide 49.1 31 0.00067 35.6 5.3 61 197-263 211-274 (289)
328 PLN02495 oxidoreductase, actin 48.9 3.7E+02 0.0081 28.9 15.1 149 190-359 124-321 (385)
329 PRK07591 threonine synthase; V 48.9 2.5E+02 0.0055 30.3 12.6 116 282-423 151-280 (421)
330 cd00950 DHDPS Dihydrodipicolin 48.8 1.3E+02 0.0029 30.2 10.0 96 251-357 28-127 (284)
331 cd02922 FCB2_FMN Flavocytochro 48.6 1.5E+02 0.0032 31.3 10.5 94 216-332 200-300 (344)
332 cd00952 CHBPH_aldolase Trans-o 48.6 1.9E+02 0.004 29.9 11.1 95 251-356 36-134 (309)
333 PRK10558 alpha-dehydro-beta-de 48.3 1E+02 0.0022 31.0 8.9 87 224-332 10-98 (256)
334 cd08567 GDPD_SpGDE_like Glycer 48.2 1E+02 0.0022 30.3 8.9 42 277-331 217-258 (263)
335 cd08556 GDPD Glycerophosphodie 48.1 1.2E+02 0.0026 27.8 8.9 94 207-331 92-187 (189)
336 TIGR02991 ectoine_eutB ectoine 47.7 2.1E+02 0.0045 29.6 11.3 115 282-423 81-200 (317)
337 COG0800 Eda 2-keto-3-deoxy-6-p 47.5 1.6E+02 0.0035 29.0 9.8 104 210-331 16-132 (211)
338 cd03332 LMO_FMN L-Lactate 2-mo 47.5 95 0.0021 33.4 8.9 90 217-332 241-337 (383)
339 PRK04147 N-acetylneuraminate l 47.1 2.7E+02 0.0058 28.3 11.9 97 250-357 30-131 (293)
340 TIGR01275 ACC_deam_rel pyridox 47.0 2.1E+02 0.0046 29.2 11.2 119 282-423 72-202 (311)
341 PRK08610 fructose-bisphosphate 47.0 2.1E+02 0.0045 29.5 10.9 131 221-355 64-202 (286)
342 COG0821 gcpE 1-hydroxy-2-methy 46.8 1.1E+02 0.0023 32.4 8.7 140 201-354 44-192 (361)
343 COG0352 ThiE Thiamine monophos 46.6 2E+02 0.0044 28.3 10.3 128 197-354 73-208 (211)
344 TIGR03572 WbuZ glycosyl amidat 46.5 1.5E+02 0.0033 28.8 9.7 34 287-332 193-227 (232)
345 TIGR01108 oadA oxaloacetate de 46.3 4.9E+02 0.011 29.6 15.2 186 189-405 17-227 (582)
346 PRK07695 transcriptional regul 46.2 46 0.00099 31.8 5.8 36 35-70 17-52 (201)
347 PLN02826 dihydroorotate dehydr 46.1 3E+02 0.0066 29.8 12.5 106 234-357 262-390 (409)
348 TIGR00693 thiE thiamine-phosph 46.0 68 0.0015 30.3 6.9 47 35-81 16-62 (196)
349 PRK07315 fructose-bisphosphate 46.0 52 0.0011 33.9 6.4 55 23-79 79-133 (293)
350 PF04028 DUF374: Domain of unk 45.6 1.1E+02 0.0024 25.0 7.0 53 31-88 18-72 (74)
351 PRK05567 inosine 5'-monophosph 45.5 60 0.0013 35.8 7.3 51 20-70 215-265 (486)
352 PRK08072 nicotinate-nucleotide 45.5 45 0.00098 34.1 5.9 65 191-264 194-261 (277)
353 PRK08206 diaminopropionate amm 45.5 1.6E+02 0.0036 31.5 10.5 121 282-423 130-262 (399)
354 PF04055 Radical_SAM: Radical 45.3 1.7E+02 0.0036 25.5 9.1 57 21-78 76-142 (166)
355 TIGR02079 THD1 threonine dehyd 45.2 3.2E+02 0.0069 29.4 12.6 116 282-423 78-201 (409)
356 COG1465 Predicted alternative 45.2 3.8E+02 0.0083 27.9 12.5 54 18-74 142-195 (376)
357 cd01487 E1_ThiF_like E1_ThiF_l 45.2 76 0.0016 29.9 7.0 67 221-298 54-121 (174)
358 PF01081 Aldolase: KDPG and KH 45.1 1.5E+02 0.0033 28.8 9.1 103 210-332 11-128 (196)
359 TIGR03249 KdgD 5-dehydro-4-deo 45.0 1.5E+02 0.0033 30.2 9.8 97 195-297 28-136 (296)
360 COG0329 DapA Dihydrodipicolina 44.9 1.3E+02 0.0029 30.9 9.3 108 196-315 28-146 (299)
361 PRK06096 molybdenum transport 44.7 33 0.00071 35.3 4.7 63 195-263 199-264 (284)
362 PRK03170 dihydrodipicolinate s 44.7 1.8E+02 0.0039 29.5 10.2 90 257-357 36-128 (292)
363 cd04501 SGNH_hydrolase_like_4 44.6 57 0.0012 30.0 6.0 40 259-298 64-103 (183)
364 cd05565 PTS_IIB_lactose PTS_II 44.6 81 0.0018 27.2 6.5 67 215-296 11-77 (99)
365 TIGR00737 nifR3_yhdG putative 44.4 2.5E+02 0.0055 28.9 11.4 125 192-332 74-222 (319)
366 cd02808 GltS_FMN Glutamate syn 44.3 36 0.00078 36.5 5.2 92 194-299 226-341 (392)
367 TIGR01093 aroD 3-dehydroquinat 44.3 72 0.0016 31.3 7.0 65 19-83 116-187 (228)
368 cd00953 KDG_aldolase KDG (2-ke 44.2 1.9E+02 0.0041 29.3 10.3 91 199-297 26-127 (279)
369 PRK07565 dihydroorotate dehydr 44.2 26 0.00057 36.5 4.1 35 21-55 101-137 (334)
370 PF01645 Glu_synthase: Conserv 44.0 1E+02 0.0022 32.9 8.4 139 174-332 148-303 (368)
371 COG0036 Rpe Pentose-5-phosphat 43.9 2.4E+02 0.0051 28.1 10.3 58 202-262 80-137 (220)
372 TIGR00683 nanA N-acetylneurami 43.8 1.7E+02 0.0036 29.9 9.8 97 197-297 25-134 (290)
373 cd01987 USP_OKCHK USP domain i 43.7 50 0.0011 28.2 5.2 43 381-423 72-123 (124)
374 PF01729 QRPTase_C: Quinolinat 43.6 22 0.00048 33.6 3.1 59 200-263 94-155 (169)
375 cd00564 TMP_TenI Thiamine mono 43.5 80 0.0017 29.2 6.9 44 35-78 15-58 (196)
376 COG4043 Preprotein translocase 43.3 33 0.00072 29.8 3.8 30 126-156 26-55 (111)
377 cd01568 QPRTase_NadC Quinolina 43.2 67 0.0015 32.6 6.7 63 194-263 190-255 (269)
378 PRK00043 thiE thiamine-phospha 43.2 78 0.0017 30.0 6.9 45 35-79 24-68 (212)
379 TIGR02355 moeB molybdopterin s 43.1 73 0.0016 31.7 6.9 68 220-298 79-146 (240)
380 cd00947 TBP_aldolase_IIB Tagat 42.8 2.7E+02 0.0058 28.6 10.9 129 221-355 58-195 (276)
381 cd01572 QPRTase Quinolinate ph 42.8 63 0.0014 32.8 6.4 62 194-264 191-255 (268)
382 PF01487 DHquinase_I: Type I 3 42.7 1.2E+02 0.0027 29.4 8.3 65 19-83 111-182 (224)
383 TIGR00078 nadC nicotinate-nucl 42.6 35 0.00076 34.6 4.6 61 194-263 187-250 (265)
384 PRK08185 hypothetical protein; 42.6 1.9E+02 0.0042 29.7 10.0 106 233-342 67-179 (283)
385 TIGR03239 GarL 2-dehydro-3-deo 42.4 1.5E+02 0.0032 29.8 8.9 87 224-332 3-91 (249)
386 KOG1251 Serine racemase [Signa 42.4 3.9E+02 0.0085 27.3 11.8 115 282-423 87-206 (323)
387 cd00757 ThiF_MoeB_HesA_family 42.2 86 0.0019 30.7 7.2 67 220-297 76-142 (228)
388 TIGR00695 uxuA mannonate dehyd 42.2 59 0.0013 35.0 6.3 85 193-297 11-102 (394)
389 PRK03910 D-cysteine desulfhydr 41.8 2.8E+02 0.0061 28.7 11.3 39 385-423 169-216 (331)
390 PRK08185 hypothetical protein; 41.8 78 0.0017 32.6 6.9 56 23-79 70-125 (283)
391 TIGR01768 GGGP-family geranylg 41.7 54 0.0012 32.5 5.6 177 245-459 15-209 (223)
392 COG1440 CelA Phosphotransferas 41.6 1E+02 0.0023 26.8 6.5 65 217-296 14-78 (102)
393 PF00016 RuBisCO_large: Ribulo 41.5 1.3E+02 0.0028 31.4 8.5 169 221-406 2-181 (309)
394 cd04741 DHOD_1A_like Dihydroor 41.5 4E+02 0.0088 27.2 13.6 134 206-357 119-292 (294)
395 KOG4175 Tryptophan synthase al 41.4 3.6E+02 0.0079 26.6 12.3 141 187-358 105-248 (268)
396 TIGR00542 hxl6Piso_put hexulos 41.2 3.7E+02 0.0081 26.7 13.2 36 200-235 23-68 (279)
397 PF02581 TMP-TENI: Thiamine mo 41.0 88 0.0019 29.4 6.8 46 34-79 14-59 (180)
398 TIGR01334 modD putative molybd 41.0 45 0.00097 34.2 5.0 63 195-263 198-263 (277)
399 PRK06801 hypothetical protein; 40.9 1.7E+02 0.0038 30.0 9.3 118 234-355 74-202 (286)
400 TIGR00010 hydrolase, TatD fami 40.5 2E+02 0.0042 27.8 9.4 102 194-299 16-129 (252)
401 PRK14024 phosphoribosyl isomer 40.5 3E+02 0.0064 27.2 10.8 135 193-345 85-235 (241)
402 cd06448 L-Ser-dehyd Serine deh 40.4 3.2E+02 0.007 28.1 11.4 117 282-423 65-190 (316)
403 TIGR00853 pts-lac PTS system, 40.1 1E+02 0.0022 26.2 6.3 62 220-296 19-80 (95)
404 PRK08644 thiamine biosynthesis 40.0 93 0.002 30.3 7.0 67 221-298 83-150 (212)
405 TIGR02311 HpaI 2,4-dihydroxyhe 39.9 1.4E+02 0.003 29.9 8.3 87 224-332 3-91 (249)
406 cd02810 DHOD_DHPD_FMN Dihydroo 39.7 3.9E+02 0.0086 26.8 11.8 51 277-335 147-199 (289)
407 PRK09427 bifunctional indole-3 39.3 74 0.0016 35.0 6.7 108 194-331 168-283 (454)
408 cd00423 Pterin_binding Pterin 39.2 1.2E+02 0.0025 30.5 7.7 53 36-90 28-88 (258)
409 TIGR01124 ilvA_2Cterm threonin 39.1 4.8E+02 0.01 29.0 13.1 115 282-423 79-199 (499)
410 TIGR01859 fruc_bis_ald_ fructo 39.1 90 0.0019 32.0 6.9 55 22-77 75-129 (282)
411 PF10844 DUF2577: Protein of u 39.0 76 0.0017 27.2 5.5 14 131-144 73-86 (100)
412 PF03644 Glyco_hydro_85: Glyco 39.0 42 0.00091 34.9 4.5 75 283-357 47-133 (311)
413 PRK05690 molybdopterin biosynt 38.9 95 0.0021 30.9 6.9 67 220-297 87-153 (245)
414 TIGR02708 L_lactate_ox L-lacta 38.9 72 0.0016 34.1 6.3 96 195-295 239-350 (367)
415 TIGR00167 cbbA ketose-bisphosp 38.7 3.3E+02 0.0071 28.1 10.9 131 221-355 64-205 (288)
416 PRK02991 D-serine dehydratase; 38.5 5E+02 0.011 28.4 12.9 116 282-423 171-301 (441)
417 PRK09195 gatY tagatose-bisphos 38.4 3.1E+02 0.0068 28.2 10.7 129 221-355 63-201 (284)
418 PRK10415 tRNA-dihydrouridine s 38.4 4.7E+02 0.01 27.1 13.4 138 189-340 19-177 (321)
419 PRK10737 FKBP-type peptidyl-pr 38.3 97 0.0021 30.1 6.6 60 101-162 50-117 (196)
420 PLN02556 cysteine synthase/L-3 38.3 2.2E+02 0.0048 30.2 10.0 118 283-423 126-249 (368)
421 PRK10812 putative DNAse; Provi 38.3 1.5E+02 0.0032 30.0 8.3 100 193-298 20-131 (265)
422 PRK02083 imidazole glycerol ph 38.2 2.8E+02 0.0061 27.4 10.3 117 288-423 71-203 (253)
423 PRK13802 bifunctional indole-3 37.9 5.2E+02 0.011 30.1 13.4 70 193-270 168-247 (695)
424 PF03437 BtpA: BtpA family; I 37.8 4.5E+02 0.0097 26.6 14.9 177 246-454 31-226 (254)
425 cd02911 arch_FMN Archeal FMN-b 37.8 2.5E+02 0.0053 27.8 9.6 94 216-332 123-220 (233)
426 PRK12290 thiE thiamine-phospha 37.8 3.1E+02 0.0067 30.1 10.9 138 194-354 268-414 (437)
427 TIGR01303 IMP_DH_rel_1 IMP deh 37.7 48 0.001 36.5 5.0 50 21-70 213-262 (475)
428 PRK09140 2-dehydro-3-deoxy-6-p 37.7 3.7E+02 0.008 26.1 10.7 108 197-335 75-182 (206)
429 PRK08246 threonine dehydratase 37.7 4.7E+02 0.01 26.8 13.2 115 282-423 82-198 (310)
430 PRK15456 universal stress prot 37.7 69 0.0015 28.3 5.3 41 382-423 93-141 (142)
431 PRK10886 DnaA initiator-associ 37.3 2.7E+02 0.0058 26.9 9.5 101 380-498 25-145 (196)
432 COG2450 Uncharacterized conser 37.2 1.1E+02 0.0024 27.6 6.3 61 19-81 39-101 (124)
433 COG0069 GltB Glutamate synthas 37.0 1.1E+02 0.0024 33.8 7.5 149 161-331 237-402 (485)
434 cd05722 Ig1_Neogenin First imm 37.0 2.1E+02 0.0045 23.4 7.8 76 100-175 8-89 (95)
435 TIGR01747 diampropi_NH3ly diam 36.9 4.7E+02 0.01 27.8 12.2 122 282-423 108-241 (376)
436 PRK12331 oxaloacetate decarbox 36.9 3.6E+02 0.0078 29.6 11.5 183 189-402 22-229 (448)
437 PRK06543 nicotinate-nucleotide 36.8 56 0.0012 33.6 5.0 62 194-264 202-266 (281)
438 PRK07107 inosine 5-monophospha 36.7 54 0.0012 36.4 5.2 51 19-70 229-279 (502)
439 PRK06110 hypothetical protein; 36.5 4.9E+02 0.011 26.8 12.2 113 283-423 85-202 (322)
440 PRK07535 methyltetrahydrofolat 36.2 76 0.0016 32.1 5.8 56 35-92 28-83 (261)
441 PRK10425 DNase TatD; Provision 35.9 2E+02 0.0044 28.9 8.8 102 193-298 15-128 (258)
442 PF07679 I-set: Immunoglobulin 35.9 97 0.0021 24.6 5.5 70 99-170 8-79 (90)
443 cd02911 arch_FMN Archeal FMN-b 35.8 82 0.0018 31.2 5.9 63 196-265 155-222 (233)
444 PRK00230 orotidine 5'-phosphat 35.8 70 0.0015 31.6 5.4 39 315-353 190-228 (230)
445 PLN02417 dihydrodipicolinate s 35.6 3.8E+02 0.0083 27.1 10.9 94 257-361 36-131 (280)
446 TIGR00126 deoC deoxyribose-pho 35.6 1.8E+02 0.0039 28.5 8.2 106 307-423 65-181 (211)
447 cd04724 Tryptophan_synthase_al 35.6 3.1E+02 0.0067 27.2 10.0 115 200-332 98-215 (242)
448 cd02932 OYE_YqiM_FMN Old yello 35.5 2.9E+02 0.0062 28.7 10.2 128 189-332 143-320 (336)
449 TIGR01740 pyrF orotidine 5'-ph 35.5 4E+02 0.0086 25.7 10.6 46 202-247 72-117 (213)
450 PF09370 TIM-br_sig_trns: TIM- 35.5 1.3E+02 0.0028 30.7 7.2 57 26-83 152-219 (268)
451 PRK02412 aroD 3-dehydroquinate 35.5 1.2E+02 0.0026 30.4 7.0 64 20-83 134-205 (253)
452 PRK08195 4-hyroxy-2-oxovalerat 35.5 1.2E+02 0.0025 32.0 7.2 50 20-69 76-125 (337)
453 PRK07048 serine/threonine dehy 35.4 5.1E+02 0.011 26.6 12.2 115 282-423 86-205 (321)
454 cd04731 HisF The cyclase subun 35.3 4.4E+02 0.0094 25.8 11.5 138 193-348 81-239 (243)
455 TIGR00742 yjbN tRNA dihydrouri 35.2 72 0.0016 33.2 5.6 72 191-268 139-228 (318)
456 TIGR00875 fsa_talC_mipB fructo 35.2 47 0.001 32.6 4.0 49 201-255 117-173 (213)
457 PRK06512 thiamine-phosphate py 34.9 1.5E+02 0.0032 29.2 7.5 44 35-78 29-73 (221)
458 TIGR02313 HpaI-NOT-DapA 2,4-di 34.9 4E+02 0.0086 27.2 11.0 96 251-357 28-128 (294)
459 PRK15118 universal stress glob 34.8 96 0.0021 27.3 5.7 41 382-423 91-137 (144)
460 cd08564 GDPD_GsGDE_like Glycer 34.7 3.5E+02 0.0077 26.9 10.4 113 208-348 150-264 (265)
461 PF07075 DUF1343: Protein of u 34.7 71 0.0015 34.1 5.5 77 249-345 71-149 (365)
462 PRK01222 N-(5'-phosphoribosyl) 34.7 2E+02 0.0044 28.0 8.4 123 191-339 62-192 (210)
463 PRK06559 nicotinate-nucleotide 34.6 65 0.0014 33.3 5.0 62 194-264 206-270 (290)
464 cd05845 Ig2_L1-CAM_like Second 34.6 2.3E+02 0.005 24.1 7.7 70 99-170 11-82 (95)
465 PRK04169 geranylgeranylglycery 34.4 1.2E+02 0.0025 30.4 6.6 57 251-332 26-83 (232)
466 COG0084 TatD Mg-dependent DNas 34.3 1.8E+02 0.0039 29.4 8.1 103 193-298 17-132 (256)
467 cd04733 OYE_like_2_FMN Old yel 34.3 5.4E+02 0.012 26.7 12.0 125 192-332 149-322 (338)
468 PRK07709 fructose-bisphosphate 34.1 1.2E+02 0.0026 31.2 6.9 54 23-77 79-132 (285)
469 PRK12738 kbaY tagatose-bisphos 34.0 2.9E+02 0.0062 28.5 9.6 118 234-355 74-201 (286)
470 cd02812 PcrB_like PcrB_like pr 33.9 69 0.0015 31.7 4.9 70 238-331 3-76 (219)
471 PRK14024 phosphoribosyl isomer 33.8 66 0.0014 31.9 4.9 74 200-279 153-238 (241)
472 PRK07998 gatY putative fructos 33.7 1.7E+02 0.0037 30.1 7.9 49 31-79 83-131 (283)
473 PRK07114 keto-hydroxyglutarate 33.7 4.8E+02 0.01 25.8 11.9 105 210-332 18-139 (222)
474 PF01116 F_bP_aldolase: Fructo 33.7 3.4E+02 0.0073 27.9 10.1 129 221-355 62-203 (287)
475 cd05851 Ig3_Contactin-1 Third 33.7 2E+02 0.0043 23.4 7.0 73 88-169 2-75 (88)
476 COG2145 ThiM Hydroxyethylthiaz 33.5 72 0.0016 32.4 5.0 47 245-296 44-90 (265)
477 PRK03512 thiamine-phosphate py 33.4 1.3E+02 0.0029 29.2 6.9 44 35-78 22-65 (211)
478 smart00729 Elp3 Elongator prot 33.3 3.2E+02 0.0069 24.8 9.3 53 23-76 88-149 (216)
479 TIGR02313 HpaI-NOT-DapA 2,4-di 33.3 3.5E+02 0.0076 27.6 10.3 99 195-297 23-133 (294)
480 COG1892 Phosphoenolpyruvate ca 33.1 81 0.0018 34.4 5.5 90 205-294 123-245 (488)
481 PRK08328 hypothetical protein; 33.0 1.4E+02 0.0031 29.4 7.1 63 224-297 87-149 (231)
482 PRK13585 1-(5-phosphoribosyl)- 32.9 2.1E+02 0.0046 27.9 8.3 67 196-267 35-109 (241)
483 cd06557 KPHMT-like Ketopantoat 32.7 3.9E+02 0.0084 27.0 10.2 129 190-331 17-177 (254)
484 PRK06106 nicotinate-nucleotide 32.7 71 0.0015 32.8 5.0 59 196-263 205-266 (281)
485 PRK05597 molybdopterin biosynt 32.7 1.4E+02 0.003 31.5 7.4 67 220-297 83-149 (355)
486 PRK14847 hypothetical protein; 32.6 6.2E+02 0.013 26.7 14.1 162 177-355 43-235 (333)
487 PRK12475 thiamine/molybdopteri 32.5 1.4E+02 0.0031 31.3 7.3 67 220-297 81-147 (338)
488 PRK10128 2-keto-3-deoxy-L-rham 32.5 2.6E+02 0.0057 28.4 9.0 87 224-332 9-97 (267)
489 PF04312 DUF460: Protein of un 32.2 44 0.00096 30.7 3.0 34 280-321 65-98 (138)
490 PRK00865 glutamate racemase; P 32.2 3.2E+02 0.007 27.3 9.6 142 179-342 41-190 (261)
491 PRK00311 panB 3-methyl-2-oxobu 32.1 5.6E+02 0.012 26.1 11.4 129 190-331 20-180 (264)
492 PRK03512 thiamine-phosphate py 32.1 4.8E+02 0.01 25.3 12.2 122 200-352 73-206 (211)
493 PRK15116 sulfur acceptor prote 32.1 57 0.0012 33.3 4.1 89 220-323 85-174 (268)
494 cd00019 AP2Ec AP endonuclease 32.0 2E+02 0.0043 28.6 8.1 32 200-231 17-57 (279)
495 cd02922 FCB2_FMN Flavocytochro 31.9 1.3E+02 0.0027 31.9 6.8 94 195-293 224-336 (344)
496 PRK02048 4-hydroxy-3-methylbut 31.8 41 0.00089 38.0 3.2 72 34-108 43-115 (611)
497 PRK15108 biotin synthase; Prov 31.8 1.2E+02 0.0025 32.0 6.6 48 22-71 125-180 (345)
498 cd08579 GDPD_memb_like Glycero 31.7 2.5E+02 0.0055 26.9 8.5 41 278-331 177-217 (220)
499 TIGR01858 tag_bisphos_ald clas 31.5 1.3E+02 0.0028 30.9 6.6 54 23-77 74-127 (282)
500 COG2225 AceB Malate synthase [ 31.4 1.3E+02 0.0027 33.7 6.8 95 206-300 218-341 (545)
No 1
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=8.7e-141 Score=1126.07 Aligned_cols=510 Identities=85% Similarity=1.269 Sum_probs=479.0
Q ss_pred CCCcccccccccCC-CCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 1 MANIDIEGLLRDVP-NDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 1 ~~~~~~~~~~~~~p-~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
|+|+|++++|.|.| ..++.|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++.+++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i 80 (511)
T PLN02461 1 MANIDIEGILKGLPADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILC 80 (511)
T ss_pred CcccchhhhcccccCccccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 89999999999998 45688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCC
Q 010449 80 AVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKS 159 (510)
Q Consensus 80 ~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~ 159 (510)
+||+||+|||||+|.+++++++.|++||.++|+.++...++++.++++|++|++.+++||.||+|||+|.|+|++++.++
T Consensus 81 ~Il~Dl~GPkIR~g~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~ 160 (511)
T PLN02461 81 AVMLDTKGPEIRTGFLKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEA 160 (511)
T ss_pred EEEeeCCCCceeccccCCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCC
Confidence 99999999999999998655799999999999988656678889999999999999999999999999999999987557
Q ss_pred CeEEEEEeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE
Q 010449 160 GTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS 239 (510)
Q Consensus 160 ~~i~~~v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia 239 (510)
+.++|+|.+||.|+++||+|+|+..+++|.||++|++||.+|++++++|||++|||++++||+++|+++.+.+.+++|||
T Consensus 161 ~~i~~~v~~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiA 240 (511)
T PLN02461 161 GTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLIS 240 (511)
T ss_pred CEEEEEEecCcEecCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 89999999999999999999999999999999999999735999999999999999999999999999998888999999
Q ss_pred EecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHH
Q 010449 240 KVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA 319 (510)
Q Consensus 240 kIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~ 319 (510)
||||++||+||+||++++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||++||+|||||++||+
T Consensus 241 KIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVa 320 (511)
T PLN02461 241 KVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVA 320 (511)
T ss_pred EECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEE
Q 010449 320 NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIV 399 (510)
Q Consensus 320 ~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIv 399 (510)
|||+||+||+|||+|||+|+||+|||++|++||+++|+.++|..+|.........+.++.+++|.+|+++|.+++|++||
T Consensus 321 nAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIi 400 (511)
T PLN02461 321 NAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIV 400 (511)
T ss_pred HHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999999999999999877765565432211113356799999999999999999999
Q ss_pred EEcCCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHH
Q 010449 400 VLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKS 479 (510)
Q Consensus 400 v~T~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~ 479 (510)
+||+||+||+++|||||.|||||++.|.++|++++|+|++++++|||+|+|||+|+++.......|..+.+++++.|+++
T Consensus 401 v~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~ 480 (511)
T PLN02461 401 VLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEH 480 (511)
T ss_pred EECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHH
Confidence 99999999999999999999999977778888999999999999999999999999886543345667899999999999
Q ss_pred HHHcCCCCCCCEEEEEeecCCCcEEEEEEeC
Q 010449 480 AIEKGLCSPGDAVVALHRIGVASVIKICIVK 510 (510)
Q Consensus 480 ~~~~g~v~~GD~VVvv~g~g~tn~ikI~~v~ 510 (510)
+++.|++++||.||+++|+|+||++||..++
T Consensus 481 ~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 481 AKKKGLCKPGDSVVALHRIGGASVIKILTVK 511 (511)
T ss_pred HHHcCCCCCcCEEEEEecCCCCcEEEEEEeC
Confidence 9999999999999999999999999999886
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=5.4e-135 Score=1080.47 Aligned_cols=486 Identities=52% Similarity=0.853 Sum_probs=452.5
Q ss_pred Cccccccccc-CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhc-CCcEE
Q 010449 3 NIDIEGLLRD-VPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNT-QILCA 80 (510)
Q Consensus 3 ~~~~~~~~~~-~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~-~~~v~ 80 (510)
+..+..+|.. -|.+..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++. +++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~ia 99 (513)
T PTZ00066 20 NISLDKILEPISDNDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLG 99 (513)
T ss_pred ccchhhhccccccCcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4455566664 466667899999999999999999999999999999999999999999999999999999996 89999
Q ss_pred EEecCCCCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCC
Q 010449 81 VMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSG 160 (510)
Q Consensus 81 i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~ 160 (510)
|++||+|||||+|.+++++++.|++|+.++|+.++...++++.++++|++|++.+++||+||+|||+|.|+|++++ ++
T Consensus 100 Il~Dl~GPkiR~g~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~ 177 (513)
T PTZ00066 100 ILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVH--DD 177 (513)
T ss_pred EEeeCCCCceeecccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEE--CC
Confidence 9999999999999998655799999999999987656788889999999999999999999999999999999985 67
Q ss_pred eEEEEEeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEE
Q 010449 161 TVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK 240 (510)
Q Consensus 161 ~i~~~v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iiak 240 (510)
.++|+|.+||.|+++||+|+||..+++|.||++|++||.+|++++|+|||++|||++++||+++|+++++.|.+++||||
T Consensus 178 ~v~~~v~~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAK 257 (513)
T PTZ00066 178 YIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPK 257 (513)
T ss_pred EEEEEEEeCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence 99999999999999999999999999999999999996469999999999999999999999999999988889999999
Q ss_pred ecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 241 VENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 241 IEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
|||++|++|||||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||||++||+|
T Consensus 258 IE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaN 337 (513)
T PTZ00066 258 IENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVAN 337 (513)
T ss_pred ECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEE
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVV 400 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv 400 (510)
||+||+||+|||+|||+|+||++||++|++||+++|+.++|..+|.........+.+..+++|.+|+++|++++|++||+
T Consensus 338 AV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~ 417 (513)
T PTZ00066 338 AVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIA 417 (513)
T ss_pred HHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999998777655543322111122446899999999999999999999
Q ss_pred EcCCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHH
Q 010449 401 LTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSA 480 (510)
Q Consensus 401 ~T~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~ 480 (510)
||.||+||+++|||||.|||||+ | ++++++|||+|+|||+|+++... .+.+++++.|++++
T Consensus 418 ~T~SG~TAr~iSk~RP~~pIia~-------t------~~~~~~R~L~L~wGV~p~~~~~~------~~~~~~i~~a~~~~ 478 (513)
T PTZ00066 418 LTETGNTARLISKYRPSCTILAL-------S------ASPSVVKSLSVARGVTTYVVNSF------QGTDVVIRNAIALA 478 (513)
T ss_pred ECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHHHHHhhcccCcEEEEecCC------CCHHHHHHHHHHHH
Confidence 99999999999999999999999 5 99999999999999999988653 57889999999999
Q ss_pred HHcCCCCCCCEEEEEeec-----CCCcEEEEEEe
Q 010449 481 IEKGLCSPGDAVVALHRI-----GVASVIKICIV 509 (510)
Q Consensus 481 ~~~g~v~~GD~VVvv~g~-----g~tn~ikI~~v 509 (510)
++.|++++||.||+++|+ |+||++||+.+
T Consensus 479 ~~~g~~~~GD~vVv~~g~~~~~~g~tn~irv~~v 512 (513)
T PTZ00066 479 KERGLVESGDSAIAVHGVKEEVAGSSNLMKVVKI 512 (513)
T ss_pred HHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEc
Confidence 999999999999999997 78999999986
No 3
>PLN02765 pyruvate kinase
Probab=100.00 E-value=3.1e-134 Score=1075.82 Aligned_cols=504 Identities=44% Similarity=0.727 Sum_probs=460.6
Q ss_pred CCCcccccccccCCCCCC-CC-CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc
Q 010449 1 MANIDIEGLLRDVPNDKR-LP-KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL 78 (510)
Q Consensus 1 ~~~~~~~~~~~~~p~~~~-~~-~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~ 78 (510)
|.|+.+..+|. |.+.. .+ ||||||||||+|+++|+|++|+++|||+||||||||++++|++.++++|++++++++|
T Consensus 9 ~~~~~~~~~~~--~~~~~~~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~ 86 (526)
T PLN02765 9 EEPIRLASILE--PSKPSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKL 86 (526)
T ss_pred ecccchhhhcc--cccccccCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46777888887 44554 55 4999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCC--------eEEE
Q 010449 79 CAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADG--------TITL 150 (510)
Q Consensus 79 v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG--------~i~l 150 (510)
++||+||||||||+|.+++ +++.|++|+.++|+.+....++.+.+++||++|++.+++||+||+||| ++.|
T Consensus 87 vaIl~Dl~GPkIR~g~~~~-~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l 165 (526)
T PLN02765 87 CAVMLDTVGPELQVINKTE-KPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWL 165 (526)
T ss_pred eEEEecCCCCceeeeecCC-CcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEE
Confidence 9999999999999999975 579999999999998754567888999999999999999999999988 8999
Q ss_pred EEEEEeCCCCeEEEEEeeCeEecC-CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhc
Q 010449 151 TVLSCDPKSGTVRCRCENTAMLGE-RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG 229 (510)
Q Consensus 151 ~V~~~~~~~~~i~~~v~~~G~l~s-~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~ 229 (510)
+|++++ ++.++|+|.+||.|++ +||+|+|++.+++|.||++|++||.+|++++++|||++|||++++||.++|+++.
T Consensus 166 ~V~~~~--~~~v~~~v~~gG~L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~ 243 (526)
T PLN02765 166 EVDEVK--GDDVVCTVKNSATLAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLS 243 (526)
T ss_pred EEEEEE--CCEEEEEEEeCcEECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHH
Confidence 999984 6789999999999999 5899999999999999999999983599999999999999999999999999998
Q ss_pred cCCC-CceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC
Q 010449 230 PHAK-NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSP 308 (510)
Q Consensus 230 ~~~~-~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~ 308 (510)
+.|. +++|||||||++||+||++|++++|||||||||||+|+|+++||.+||+|+++|+++|||||+ |||||||++||
T Consensus 244 ~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np 322 (526)
T PLN02765 244 SLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL 322 (526)
T ss_pred hcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCC
Confidence 8775 899999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 010449 309 RPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVR 388 (510)
Q Consensus 309 ~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~ 388 (510)
+|||||++||+|||+||+||+|||+|||+|+||++||++|++||+++|+.++|...|.........+.+..+++|.+|++
T Consensus 323 ~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~ 402 (526)
T PLN02765 323 RPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVR 402 (526)
T ss_pred CCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987666544443211112233456899999999
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCc-CCCcc
Q 010449 389 TANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAK-ATDAE 467 (510)
Q Consensus 389 ~A~~~~a~aIvv~T~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~-~~~~~ 467 (510)
+|.+++|++|||||.||+||+++|||||.|||+|+++|.+++.+++|+++++.++|||+|+|||+|++...... ..|..
T Consensus 403 ~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~ 482 (526)
T PLN02765 403 AAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSA 482 (526)
T ss_pred HHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccc
Confidence 99999999999999999999999999999999999668777778999999999999999999999998865421 11223
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCcEEEEEEeC
Q 010449 468 STEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK 510 (510)
Q Consensus 468 ~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g~g~tn~ikI~~v~ 510 (510)
..+.+++.|++++++.|++++||.||++++.|+||++||+.++
T Consensus 483 ~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 483 TNESVLKVALDHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCceEEEEEcC
Confidence 4688899999999999999999999999988999999999874
No 4
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=5.9e-134 Score=1073.14 Aligned_cols=468 Identities=33% Similarity=0.550 Sum_probs=435.2
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCC
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDG 98 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~ 98 (510)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|++.++++|++++++|+|++||+||||||||+|.+.++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CcEEecCCCEEEEEecCCCCC--CccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCC
Q 010449 99 KPIQLKEGQEITVSTDYDFKG--NEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERK 176 (510)
Q Consensus 99 ~~i~l~~G~~v~l~~~~~~~~--~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K 176 (510)
+++.|++||.++|+.+. ..+ +.+.+++||++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++|
T Consensus 104 ~~i~l~~G~~v~lt~~~-~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~~v~~~v~~~G~l~~~K 180 (509)
T PLN02762 104 SSAKAEDGEEWTFTVRK-FDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKI--GPDVKCKCTDPGLLLPRA 180 (509)
T ss_pred ccEEecCCCEEEEeCCc-cCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEE--CCEEEEEEEeCcEEcCCC
Confidence 57999999999999763 344 4578999999999999999999999999999999985 678999999999999999
Q ss_pred Cccc-------CCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC--CceEEEEecCHHHH
Q 010449 177 NVNL-------PGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK--NIQLMSKVENQEGV 247 (510)
Q Consensus 177 ~vnl-------p~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~--~~~IiakIEt~~av 247 (510)
|||+ |+..+++|.||++|++|| +||+++|+|||++|||++++||+++|+++.+.|. +++||||||+++|+
T Consensus 181 gvNl~~~g~~~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av 259 (509)
T PLN02762 181 NLTFWRDGSLVRERNAMLPTISSKDWLDI-DFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSL 259 (509)
T ss_pred ceeeccccCCCCCCccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHH
Confidence 9999 999999999999999999 9999999999999999999999999999988764 79999999999999
Q ss_pred hchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCc
Q 010449 248 VNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD 327 (510)
Q Consensus 248 ~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D 327 (510)
+||+||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+|
T Consensus 260 ~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtD 339 (509)
T PLN02762 260 KNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 339 (509)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHH--hcC-CCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC
Q 010449 328 CVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMI--RST-PLPMSPLESLASSAVRTANKARAKLIVVLTRG 404 (510)
Q Consensus 328 ~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~--~~~-~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~s 404 (510)
|+|||+|||+|+||+|||++|++||+++|+++.+...+.... ... ..+.+..+++|.+|+++|++++|++||+||+|
T Consensus 340 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~s 419 (509)
T PLN02762 340 ALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKH 419 (509)
T ss_pred EEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 999999999999999999999999999998643211111110 101 11124578999999999999999999999999
Q ss_pred chHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcC
Q 010449 405 GTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKG 484 (510)
Q Consensus 405 G~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g 484 (510)
|+||+++|||||.+||||+ | ++++++|+|+|+|||+|++.... .+.+++++.++++++++|
T Consensus 420 G~tA~~iSk~RP~~pIia~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g 480 (509)
T PLN02762 420 GHMASLLSRNRPDCPIFAF-------T------DTTSVRRRLNLQWGLIPFRLDFS------DDMESNLNKTFSLLKARG 480 (509)
T ss_pred cHHHHHHHhhCCCCCEEEE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999 5 99999999999999999987553 678999999999999999
Q ss_pred CCCCCCEEEEEeec---CCCcEEEEEEe
Q 010449 485 LCSPGDAVVALHRI---GVASVIKICIV 509 (510)
Q Consensus 485 ~v~~GD~VVvv~g~---g~tn~ikI~~v 509 (510)
++++||.||+++|+ |.||+|||+.+
T Consensus 481 ~~~~GD~VVv~~g~~~~g~tn~i~v~~v 508 (509)
T PLN02762 481 MIKSGDLVIAVSDLTPSSMLQSIQVRNV 508 (509)
T ss_pred CCCCCCEEEEEeCCCCCCCceEEEEEEc
Confidence 99999999999996 99999999986
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-131 Score=1050.40 Aligned_cols=465 Identities=47% Similarity=0.732 Sum_probs=438.0
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCC
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDG 98 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~ 98 (510)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|++++++|+|++|++||+|||||+|.++++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCc
Q 010449 99 KPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNV 178 (510)
Q Consensus 99 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~v 178 (510)
+++.|++|+.++|+.+....++.+.++++|++|++.+++||.|++|||++.|+|++++ ++.+.|+|.+||.|+++|||
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~--~~~v~~~v~~~G~l~s~Kgv 158 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAIT--GNEVICKVLNNGDLGENKGV 158 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEe--CCEEEEEEEECCEecCCCce
Confidence 5699999999999987655678889999999999999999999999999999999985 67899999999999999999
Q ss_pred ccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCC-CCceEEEEecCHHHHhchHHHHhhc
Q 010449 179 NLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRET 257 (510)
Q Consensus 179 nlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~ 257 (510)
|+|+..+++|.||++|++|| +|++++|+|||++|||++++||+++++++.+.| .++.|||||||++|++|+|+|++++
T Consensus 159 n~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~ 237 (470)
T PRK09206 159 NLPGVSIALPALAEKDKQDL-IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEAS 237 (470)
T ss_pred eccCcccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhC
Confidence 99999999999999999999 999999999999999999999999999999887 6899999999999999999999999
Q ss_pred CeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC
Q 010449 258 DSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA 337 (510)
Q Consensus 258 DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~ 337 (510)
|||||||||||+++|++++|.+||+|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+|||+
T Consensus 238 DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~ 317 (470)
T PRK09206 238 DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAK 317 (470)
T ss_pred CEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC
Q 010449 338 GAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPA 417 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~ 417 (510)
|+||+|||++|++||+++|+.++|. +..... . ...+..+++|.+|+++|.+++|++||+||.||+||+++|||||.
T Consensus 318 G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~~-~-~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~ 393 (470)
T PRK09206 318 GKYPLEAVSIMATICERTDRVMNSR--LESNND-N-RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPD 393 (470)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchh--hhhhcc-c-cCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCC
Confidence 9999999999999999999875543 211111 1 11245799999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 010449 418 VPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHR 497 (510)
Q Consensus 418 ~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g 497 (510)
+||||+ | ++++++|||+|+|||+|++++.. .+.+++++.|++++++.|++++||.||+++|
T Consensus 394 ~pIia~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g 454 (470)
T PRK09206 394 ATILAL-------T------TNEKTARQLVLSKGVVPQLVKEI------ASTDDFYRLGKELALQSGLAQKGDVVVMVSG 454 (470)
T ss_pred CCEEEE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeC
Confidence 999999 5 99999999999999999988653 5788999999999999999999999999999
Q ss_pred c----CCCcEEEEEEe
Q 010449 498 I----GVASVIKICIV 509 (510)
Q Consensus 498 ~----g~tn~ikI~~v 509 (510)
+ |+||++||+.+
T Consensus 455 ~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 455 ALVPSGTTNTASVHVL 470 (470)
T ss_pred CCCCCCCCeEEEEEEC
Confidence 6 89999999863
No 6
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-130 Score=1041.25 Aligned_cols=464 Identities=36% Similarity=0.609 Sum_probs=436.8
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCC
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKD 97 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~ 97 (510)
+.|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||||||||+|.+++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFAD 82 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCC
Q 010449 98 GKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKN 177 (510)
Q Consensus 98 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~ 177 (510)
+++.|++||.++|+.+ ...++++.++++|++|++.+++||.|++|||+|.|+|++++ ++.++|+|.+||.|+++||
T Consensus 83 -~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~--~~~i~~~v~~~G~l~~~Kg 158 (476)
T PRK06247 83 -GKVQLANGQTFRLDVD-DAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACD--GDDVVCRVVEGGPVSDRKG 158 (476)
T ss_pred -CcEeccCCCEEEEEec-ccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeCcEEcCCCc
Confidence 4699999999999987 35678889999999999999999999999999999999985 6789999999999999999
Q ss_pred cccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhc
Q 010449 178 VNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRET 257 (510)
Q Consensus 178 vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~ 257 (510)
+|+|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|++++ .++.|||||||++|++|+|+|++++
T Consensus 159 vn~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~ 234 (476)
T PRK06247 159 VSLPGTVLSVSALTEKDRADL-EFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEAS 234 (476)
T ss_pred cccCCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHc
Confidence 999999999999999999999 999999999999999999999999999995 4789999999999999999999999
Q ss_pred CeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC
Q 010449 258 DSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA 337 (510)
Q Consensus 258 DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~ 337 (510)
|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+|||+
T Consensus 235 DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~ 314 (476)
T PRK06247 235 DAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETAS 314 (476)
T ss_pred CEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC
Q 010449 338 GAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPA 417 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~ 417 (510)
|+||++||++|++||+++|+.++|...|..... ....+..+++|.+|+++|+++++++||+||.||+||+++|||||.
T Consensus 315 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~ 392 (476)
T PRK06247 315 GKYPVEAVRTMARIIRQVERDPTYPPLIHAQRP--QPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPP 392 (476)
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhhhccc--ccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCC
Confidence 999999999999999999997666544432111 111345689999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 010449 418 VPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHR 497 (510)
Q Consensus 418 ~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g 497 (510)
|||+|+ | +++.++|+|+|+|||+|++.+.. .+.++++..|++++++.|++++||.||+++|
T Consensus 393 ~pI~a~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g 453 (476)
T PRK06247 393 LPILAL-------T------PNPETARRLALTWGVHCVVVDDA------RDTDDMVRRADRIALAEGFYKRGDRVVIVAG 453 (476)
T ss_pred CCEEEE-------C------CCHHHHHHhhcccCCeeEecCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeC
Confidence 999999 5 99999999999999999988653 5788999999999999999999999999999
Q ss_pred c-----CCCcEEEEEEeC
Q 010449 498 I-----GVASVIKICIVK 510 (510)
Q Consensus 498 ~-----g~tn~ikI~~v~ 510 (510)
+ |.||++||++|+
T Consensus 454 ~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 454 VPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred CCCCCCCCCeEEEEEEeC
Confidence 7 789999999874
No 7
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=3.4e-129 Score=1037.78 Aligned_cols=474 Identities=57% Similarity=0.870 Sum_probs=445.2
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCC
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDG 98 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~ 98 (510)
+|||||||||||+|+++|.|++|+++|||+||||||||++++|+++++++|++++++|+|++||+||||||||+|.++++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcEEecCCCEEEEEecCC-CCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCC-eEEEEEeeCeEecCCC
Q 010449 99 KPIQLKEGQEITVSTDYD-FKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSG-TVRCRCENTAMLGERK 176 (510)
Q Consensus 99 ~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~-~i~~~v~~~G~l~s~K 176 (510)
+++.|++||.++|+.+.. ..++.+.|+++|++|++.+++||.|++|||++.|+|++++ ++ .++|+|.+||.|+++|
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~--~~~~i~~~v~~~G~l~~~k 158 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKD--DDKTLVCEVLNGGVLGSRK 158 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEc--CCceEEEEEEeCeEEcCCC
Confidence 579999999999998753 5678889999999999999999999999999999999985 55 8999999999999999
Q ss_pred CcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh
Q 010449 177 NVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 177 ~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|+|+|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|+++...|.++.+||||||++|++|+++|+++
T Consensus 159 gin~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~ 237 (480)
T cd00288 159 GVNLPGTDVDLPALSEKDKADL-RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA 237 (480)
T ss_pred ceEeeCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 9999999999999999999999 999999999999999999999999999999888899999999999999999999999
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 238 ~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa 317 (480)
T cd00288 238 SDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 317 (480)
T ss_pred cCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010449 337 AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRP 416 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP 416 (510)
+|+||++||++|++||+++|+.++|...|.......+...+..++++.+|+++|+.+++++||+||.||+||+++|+|||
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP 397 (480)
T cd00288 318 KGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRP 397 (480)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCC
Confidence 99999999999999999999876665444322211111224678999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010449 417 AVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALH 496 (510)
Q Consensus 417 ~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~ 496 (510)
.+||+|+ | ++++++|+|+|+|||+|+++... +..|+.+.+++++.|+++++++|++++||.||+++
T Consensus 398 ~~pIiav-------T------~~~~~~r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~ 463 (480)
T cd00288 398 NAPIIAV-------T------RNEQTARQLHLYRGVYPVLFEEP-KPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQ 463 (480)
T ss_pred CCCEEEE-------c------CCHHHhhheeeccCcEEEEeccc-ccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 5 99999999999999999988654 34788899999999999999999999999999999
Q ss_pred ec----CCCcEEEEEEe
Q 010449 497 RI----GVASVIKICIV 509 (510)
Q Consensus 497 g~----g~tn~ikI~~v 509 (510)
|+ |+||++||+.+
T Consensus 464 g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 464 GWPVGSGSTNTMRILTV 480 (480)
T ss_pred CCCCCCCCCeEEEEEEC
Confidence 97 78999999875
No 8
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-129 Score=1028.30 Aligned_cols=468 Identities=48% Similarity=0.740 Sum_probs=439.9
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCC
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKD 97 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~ 97 (510)
+.|||||||||||+|+++++|++|+++||||||||||||++++|.+.++++|++++++|+|++||+||||||||+|.+.+
T Consensus 3 ~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~~ 82 (477)
T COG0469 3 MMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFKG 82 (477)
T ss_pred CCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcEEecCCCEEEEEecCCC-CCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCC
Q 010449 98 GKPIQLKEGQEITVSTDYDF-KGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERK 176 (510)
Q Consensus 98 ~~~i~l~~G~~v~l~~~~~~-~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K 176 (510)
+.+.|+.|+.++|+.+... .++.+.++++|+.|++.+++||+||+|||++.|+|.+++ ++.+.|+|.+||.|+++|
T Consensus 83 -~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~--~~~v~~~v~n~G~l~~~K 159 (477)
T COG0469 83 -GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVD--GDAVITRVLNGGVLSSNK 159 (477)
T ss_pred -CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEee--CCEEEEEEEeCCCccCCC
Confidence 5699999999999988542 445789999999999999999999999999999999995 556999999999999999
Q ss_pred CcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCC-CCceEEEEecCHHHHhchHHHHh
Q 010449 177 NVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILR 255 (510)
Q Consensus 177 ~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~-~~~~IiakIEt~~av~nldeI~~ 255 (510)
|||+||..+++|+||+||++|| +|++++|+|||++|||++++|++++|+++.+.+ .+++||||||+++||+|||+|++
T Consensus 160 gvN~pg~~l~~palteKD~~dl-~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~ 238 (477)
T COG0469 160 GVNLPGVDLSLPALTEKDKEDL-KFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIE 238 (477)
T ss_pred ceecCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999988766 45999999999999999999999
Q ss_pred hcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCC
Q 010449 256 ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 335 (510)
Q Consensus 256 ~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Et 335 (510)
+||||||||||||+|+|.++||.+||+|+++||.+|||||+||||||||++||+|||||++||||||+||+||+|||+||
T Consensus 239 ~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ET 318 (477)
T COG0469 239 ASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGET 318 (477)
T ss_pred hcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhC
Q 010449 336 AAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYR 415 (510)
Q Consensus 336 a~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~R 415 (510)
|.|+||+++|++|++||.++|+.+.+.+++... ..+...+..++++.+++++|..+++++||++|.||+||+++||||
T Consensus 319 A~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~--~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~R 396 (477)
T COG0469 319 AAGKYPVEAVATMARIAKEAEKELPDNQLLRFR--VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYR 396 (477)
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc--cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCC
Confidence 999999999999999999999987743333221 122234568999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 010449 416 PAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVAL 495 (510)
Q Consensus 416 P~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv 495 (510)
|.+||+|+ | ++++++|+|+|+|||+|+++... ..+.+..++.+++.+++.|+++.||.+|++
T Consensus 397 p~~pIia~-------t------~~~~v~r~l~l~~GV~p~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~gD~vvit 458 (477)
T COG0469 397 PEAPIIAL-------T------PNERVARRLALVWGVYPLLVEEK-----PTSTDEMVEEAVEKLLESGLVKKGDLVVIT 458 (477)
T ss_pred CCCcEEEE-------C------CCHHHHhhhceeecceeEEecCC-----CCcHHHHHHHHHHHHHhcCcccCCCEEEEe
Confidence 99999999 5 99999999999999999999752 268999999999999999999999999999
Q ss_pred eec-----CCCcEEEEEEe
Q 010449 496 HRI-----GVASVIKICIV 509 (510)
Q Consensus 496 ~g~-----g~tn~ikI~~v 509 (510)
+|. |+||++||+.+
T Consensus 459 ~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 459 AGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred cCcccccCCCceeEEEEeC
Confidence 995 88999999875
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-128 Score=1054.77 Aligned_cols=467 Identities=42% Similarity=0.678 Sum_probs=440.9
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCC
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKD 97 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~ 97 (510)
.+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++++|++|++||||||||+|.+++
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCC
Q 010449 98 GKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKN 177 (510)
Q Consensus 98 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~ 177 (510)
+++.|++||.++|+.+ ...++++.++++|++|++.+++||.||+|||+|.|+|++++++++.++|+|.+||.|+++||
T Consensus 86 -~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 86 -GPIELKTGDEFILTSR-EVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred -CcEEecCCCEEEEEec-ccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 4699999999999987 34678889999999999999999999999999999999987567899999999999999999
Q ss_pred cccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhcc-CCCCceEEEEecCHHHHhchHHHHhh
Q 010449 178 VNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-HAKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 178 vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~-~~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
+|+|+..+++|.||++|++|| +|++++++|||++|||++++||+++++++.+ .+.++.|||||||++|++|+|+|+++
T Consensus 164 vn~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~ 242 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDL-IFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL 242 (590)
T ss_pred ccccCCccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 999999999999999999999 9999999999999999999999999999954 57899999999999999999999999
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|||||||||||+++|.+++|.+|++|+++|+++|||||+||||||||++||+|||||++||+|||+||+||+|||+|||
T Consensus 243 ~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA 322 (590)
T PRK06354 243 CDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETA 322 (590)
T ss_pred cCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010449 337 AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRP 416 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP 416 (510)
+|+||++||++|++||+++|+.++|..+|.+... ...+..+++|.+|+++|++++|++||+||+||+||+++|||||
T Consensus 323 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~---~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp 399 (590)
T PRK06354 323 AGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE---FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRP 399 (590)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc---cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCC
Confidence 9999999999999999999998776544433211 1234568999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010449 417 AVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALH 496 (510)
Q Consensus 417 ~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~ 496 (510)
.|||+|+ | +++.++|||+|+|||+|++.... .+.+.+++.+++++++.|++++||.||+++
T Consensus 400 ~~pI~a~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~ 460 (590)
T PRK06354 400 KTPILAV-------T------PNESVARRLQLVWGVTPLLVLDA------PSTDETFDAAINVAQESGLLKQGDLVVITA 460 (590)
T ss_pred CCCEEEE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 5 99999999999999999998664 568899999999999999999999999999
Q ss_pred ec-----CCCcEEEEEEe
Q 010449 497 RI-----GVASVIKICIV 509 (510)
Q Consensus 497 g~-----g~tn~ikI~~v 509 (510)
|. |+||++||+.+
T Consensus 461 g~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 461 GTLVGESGSTDLMKVHVV 478 (590)
T ss_pred CCCCCcCCCceeEEEEEe
Confidence 96 79999999886
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=3.4e-126 Score=1011.27 Aligned_cols=455 Identities=45% Similarity=0.674 Sum_probs=430.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCC
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKD 97 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~ 97 (510)
..|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++.+++|+|++|++||+|||||+|.+.+
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCC
Q 010449 98 GKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKN 177 (510)
Q Consensus 98 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~ 177 (510)
+++.|++|+.|+|+.++...++++.|++||++|++.+++||.||+|||++.|+|++++ ++.++|+|++||.|+++||
T Consensus 82 -~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~--~~~v~~~v~~~g~l~s~kg 158 (465)
T PRK05826 82 -GKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVD--GDEVETEVKNGGPLSNNKG 158 (465)
T ss_pred -CcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEe--CCEEEEEEEeCcEecCCce
Confidence 5699999999999988656788899999999999999999999999999999999985 6789999999999999999
Q ss_pred cccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC-CceEEEEecCHHHHhchHHHHhh
Q 010449 178 VNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 178 vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~-~~~IiakIEt~~av~nldeI~~~ 256 (510)
+|+|+..+++|.||++|.++| +|++++|+|+|++|||++++|++++++++.+.|. ++.+||||||++||+|+|+|+++
T Consensus 159 vnlp~~~~~lp~lte~D~~~i-~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~ 237 (465)
T PRK05826 159 INIPGGGLSLPALTEKDKADI-KFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA 237 (465)
T ss_pred eeccCcccCCCCCChhhHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999887 99999999999999999999999
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+|||
T Consensus 238 ~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA 317 (465)
T PRK05826 238 SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETA 317 (465)
T ss_pred cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhhC
Q 010449 337 AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKYR 415 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a~aIvv~T~sG~tA~~iSr~R 415 (510)
+|+||+++|++|++||+++|+.++|...+.... ....+..+++|.+|+++|.+++ |++||+||.||+||+++||||
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~---~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~R 394 (465)
T PRK05826 318 AGKYPVEAVEAMARICKGAEKEFSINLSKHRLD---RQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFR 394 (465)
T ss_pred cCcCHHHHHHHHHHHHHHHHhccchhhhhhhcc---ccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhC
Confidence 999999999999999999999766532222111 1113567999999999999999 999999999999999999999
Q ss_pred CCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 010449 416 PAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVAL 495 (510)
Q Consensus 416 P~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv 495 (510)
|.||||++ | +++.++|||+|+|||+|++++.. .+.+..++.|++++++.|++++||.||++
T Consensus 395 P~~pI~~~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~gd~vvvv 455 (465)
T PRK05826 395 PGAPIFAV-------T------RDEKTQRRLALYRGVYPVLFDSA------ADTDDAAEEALRLLLEKGLVESGDLVVVT 455 (465)
T ss_pred CCCCEEEE-------c------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 99999999 5 89999999999999999988653 57889999999999999999999999999
Q ss_pred eec
Q 010449 496 HRI 498 (510)
Q Consensus 496 ~g~ 498 (510)
+|.
T Consensus 456 ~g~ 458 (465)
T PRK05826 456 SGD 458 (465)
T ss_pred eCC
Confidence 997
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=5.2e-123 Score=996.09 Aligned_cols=464 Identities=37% Similarity=0.590 Sum_probs=434.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhc-CCcEEEEecCCCCeeEeeecC
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNT-QILCAVMLDTKGPEIRTGFLK 96 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~-~~~v~i~~Dl~Gp~iR~g~~~ 96 (510)
..|||||||||||+|+++|+|++|+++|||+||||||||++++|++.++++|++.++. +++++|++||||||||+|.+.
T Consensus 108 ~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~ 187 (581)
T PLN02623 108 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 187 (581)
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCC
Confidence 3489999999999999999999999999999999999999999999999999999986 499999999999999999997
Q ss_pred CCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCC
Q 010449 97 DGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERK 176 (510)
Q Consensus 97 ~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K 176 (510)
+ ++.|++||.|+|+.+. ..++++.+++||++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++|
T Consensus 188 ~--~i~l~~G~~v~lt~~~-~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~~v~~~V~~gG~L~s~K 262 (581)
T PLN02623 188 Q--PIMLEEGQEFTFTIKR-GVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSKT--SDSVKCEVVDGGELKSRR 262 (581)
T ss_pred C--CEEecCCCEEEEecCc-cCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeceEecCCC
Confidence 4 6999999999999863 3578889999999999999999999999999999999985 678999999999999999
Q ss_pred CcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh
Q 010449 177 NVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 177 ~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|+|+||..+++|.||+||++|| +|++++++|||++|||++++||+++++++...|.++.+||||||++||+|+|+|++.
T Consensus 263 gvNlpg~~~~lp~lTekD~~di-~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g 341 (581)
T PLN02623 263 HLNVRGKSATLPSITEKDWEDI-KFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITA 341 (581)
T ss_pred CCCCCCCcCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHh
Confidence 9999999999999999999999 999999999999999999999999999999989999999999999999999999999
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+
T Consensus 342 ~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta 421 (581)
T PLN02623 342 SDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 421 (581)
T ss_pred CCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCC
Q 010449 337 AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRP 416 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP 416 (510)
.|+||++||++|++||+++|+.+++...+...... .+.+..+++|.+|+++|+.++++ ||+||+||+||+++|||||
T Consensus 422 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP 498 (581)
T PLN02623 422 HGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQA--FKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYRP 498 (581)
T ss_pred cCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccc--cCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhCC
Confidence 99999999999999999999876553222211111 12245689999999999999999 9999999999999999999
Q ss_pred CCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 010449 417 AVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALH 496 (510)
Q Consensus 417 ~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~ 496 (510)
.|||||+ | ++++++|||+|+|||+|++.+.. .+.+++++.|++++++.|++++||.||+++
T Consensus 499 ~~pI~av-------T------~~~~~aR~L~L~~GV~P~~~~~~------~~~e~~i~~a~~~~~~~g~v~~GD~vviv~ 559 (581)
T PLN02623 499 SGTIFAF-------T------NEKRIQQRLALYQGVCPIYMQFS------DDAEETFARALSLLLNKGMVKEGEEVALVQ 559 (581)
T ss_pred CCCEEEE-------C------CCHHHHHHhhcccccEEEecCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 5 99999999999999999987543 678999999999999999999999999998
Q ss_pred e-----c--CCCcEEEEEEe
Q 010449 497 R-----I--GVASVIKICIV 509 (510)
Q Consensus 497 g-----~--g~tn~ikI~~v 509 (510)
| + |+||++||+++
T Consensus 560 g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 560 SGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred ccCCCCCCCCCCeEEEEEEe
Confidence 7 1 78999999886
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-121 Score=971.14 Aligned_cols=447 Identities=44% Similarity=0.716 Sum_probs=413.7
Q ss_pred CCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCCcEEecCCCEEEEEecC--CCCCCccE
Q 010449 46 MNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDY--DFKGNEEM 123 (510)
Q Consensus 46 ~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~--~~~~~~~~ 123 (510)
||+||||||||++++|+++++++|++++++|++++||+||||||||+|.+++ +.+.|++|+.++|+.+. ...++.+.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~-~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVG-GEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCC-CcEEecCCCEEEEEeccccccCCCCCE
Confidence 7999999999999999999999999999999999999999999999999976 46999999999999873 34677889
Q ss_pred EecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccC
Q 010449 124 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 203 (510)
Q Consensus 124 i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~ 203 (510)
+++||++|++.+++||.||+|||++.|+|.++. +++.++|+|.+||.|+++||+|+||..+++|+++++|.++| +|++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~-~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI-~~al 157 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHE-DEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADL-QFGV 157 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEc-CCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHH-HHHH
Confidence 999999999999999999999999999999884 24689999999999999999999999999999999999999 9999
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHH
Q 010449 204 PNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMM 283 (510)
Q Consensus 204 ~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~i 283 (510)
++|+|||++|||++++|++++++++++.|.++.|||||||++||+|||+|++.+|||||||||||+++|.+++|.+||+|
T Consensus 158 d~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~I 237 (454)
T PTZ00300 158 EQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKIL 237 (454)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 010449 284 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 363 (510)
Q Consensus 284 i~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~ 363 (510)
+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|||+|||+|+||++||++|++||++||+.+++..
T Consensus 238 i~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~ 317 (454)
T PTZ00300 238 ISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYV 317 (454)
T ss_pred HHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754433
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhh
Q 010449 364 VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPA 443 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~a 443 (510)
.|.......+.+.+..+++|.+|+++|.+++|++||+||.||+||+++|||||.|||||+ | ++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~-------t------~~~~~a 384 (454)
T PTZ00300 318 FFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCV-------T------TRLQTC 384 (454)
T ss_pred hhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHHH
Confidence 444322222223355789999999999999999999999999999999999999999999 5 999999
Q ss_pred hhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCcEEEEEEe
Q 010449 444 RHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIV 509 (510)
Q Consensus 444 R~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g~----g~tn~ikI~~v 509 (510)
|||+|+|||+|++.+..... ...+.+++++.|++++++.|++++||.||+++|+ |+||++||+.+
T Consensus 385 r~l~l~~GV~p~~~~~~~~~-~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 385 RQLNITQGVESVFFDAERLG-HDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred HHhhcccCcEEEEecccccc-ccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 99999999999988641111 1256889999999999999999999999999997 89999999986
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1.3e-119 Score=967.81 Aligned_cols=465 Identities=51% Similarity=0.793 Sum_probs=434.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCC
Q 010449 20 PKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGK 99 (510)
Q Consensus 20 ~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~ 99 (510)
|||||||||||+|+++|.|++|+++|||+||||||||++++|+++++++|++++++|++++|++||+|||||+|.+.+ +
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~-~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKG-G 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999975 4
Q ss_pred cEEecCCCEEEEEecC-CCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCc
Q 010449 100 PIQLKEGQEITVSTDY-DFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNV 178 (510)
Q Consensus 100 ~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~v 178 (510)
++.|++||.|+|+.+. ...++.+.|++||++|++.+++||.|++|||++.|+|++++ ++.++|+|.+||.|+++||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~--~~~~~~~v~~~g~l~~~kgv 157 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVE--GDKVICEVLNGGTLKSKKGV 157 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeCcEEcCCcee
Confidence 6999999999999874 34577889999999999999999999999999999999985 67899999999999999999
Q ss_pred ccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCC-CCceEEEEecCHHHHhchHHHHhhc
Q 010449 179 NLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRET 257 (510)
Q Consensus 179 nlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~ 257 (510)
|+|+..+++|.||++|.+|| +++++.|+|+|++|||++++|++.+++++.+.+ .++.|+|||||++|++|+++|++++
T Consensus 158 n~p~~~~~~~~ltekD~~Dl-~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~ 236 (473)
T TIGR01064 158 NLPGADVDLPALSEKDKKDL-KFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEAS 236 (473)
T ss_pred ecCCCccCCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhC
Confidence 99999999999999999999 999999999999999999999999999998877 5899999999999999999999999
Q ss_pred CeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC
Q 010449 258 DSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA 337 (510)
Q Consensus 258 DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~ 337 (510)
||+|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++|++|++++|+|++|||+||+.
T Consensus 237 dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~ 316 (473)
T TIGR01064 237 DGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAK 316 (473)
T ss_pred CcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC
Q 010449 338 GAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPA 417 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~ 417 (510)
|+||++||++|++||+++|+.++|...|...........+..+++|.+|+++|..++|++||+||.||+||+++|||||.
T Consensus 317 G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~ 396 (473)
T TIGR01064 317 GKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPN 396 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCC
Confidence 99999999999999999998766554443321101112356789999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 010449 418 VPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHR 497 (510)
Q Consensus 418 ~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g 497 (510)
+||||+ | +++.++|+|+|+|||+|+++... ..+.+++++.+++++++.|++++||.||+++|
T Consensus 397 ~PIiAv-------T------~~~~v~R~L~L~wGV~Pil~~~~-----~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g 458 (473)
T TIGR01064 397 APIIAV-------T------PNERVARQLALYWGVFPFLVDEE-----PSDTEARVNKALELLKEKGILKKGDLVVVIQG 458 (473)
T ss_pred CCEEEE-------c------CCHHHHHHhhccCCcEEEEeCCC-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Confidence 999999 4 99999999999999999988652 25678899999999999999999999999999
Q ss_pred c------CCCcEEEE
Q 010449 498 I------GVASVIKI 506 (510)
Q Consensus 498 ~------g~tn~ikI 506 (510)
+ |.||++||
T Consensus 459 ~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 459 GAPIGGVGGTNTIRV 473 (473)
T ss_pred CCCCCCCCCCeEEeC
Confidence 3 78999885
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-119 Score=945.78 Aligned_cols=487 Identities=60% Similarity=0.907 Sum_probs=461.7
Q ss_pred cccccc-CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc-EEEEec
Q 010449 7 EGLLRD-VPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL-CAVMLD 84 (510)
Q Consensus 7 ~~~~~~-~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~-v~i~~D 84 (510)
...|++ -.+....++|||+||+||++++.|.|++|+++|||++|+|||||++++|++.++|+|++...++.+ ++||+|
T Consensus 7 ~~~L~~~~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LD 86 (501)
T KOG2323|consen 7 ECLLSGSNGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLD 86 (501)
T ss_pred hhhhcccccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhc
Confidence 344542 223334589999999999999999999999999999999999999999999999999999988755 999999
Q ss_pred CCCCeeEeeecCCCCcEEecCCCEEEEEecCCCCC-CccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEE
Q 010449 85 TKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKG-NEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVR 163 (510)
Q Consensus 85 l~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~-~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~ 163 (510)
++||++|||.++++.+++|++|+.++||+++.... ..+.+++||+++.++|++||.|++|||.+.+.|.++. .+.++
T Consensus 87 tkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~--~~~~~ 164 (501)
T KOG2323|consen 87 TKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVS--KDEVT 164 (501)
T ss_pred cCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEEEee--cCceE
Confidence 99999999999988899999999999999954333 4789999999999999999999999999999999985 44899
Q ss_pred EEEeeCeEecCCCC-cccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEec
Q 010449 164 CRCENTAMLGERKN-VNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 242 (510)
Q Consensus 164 ~~v~~~G~l~s~K~-vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIE 242 (510)
|+|+|+|.++|+|+ +|+||+..++|.|+|+|.+|| +|+.++++|+|++||||.++|+.++|++|++.+++++||+|||
T Consensus 165 c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl-~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIE 243 (501)
T KOG2323|consen 165 CRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDL-KFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIE 243 (501)
T ss_pred EEEecCcccccccCcccCCCccccCCccChhhHHHH-hcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEec
Confidence 99999999999999 999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHH
Q 010449 243 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAV 322 (510)
Q Consensus 243 t~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av 322 (510)
+++|+.|+|+|+.++||+|++|||||+|+|.|+++.+||.+|.+|+.+|||||+||||||||+.+|+|||||++||+|||
T Consensus 244 n~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAV 323 (501)
T KOG2323|consen 244 NQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAV 323 (501)
T ss_pred hhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEc
Q 010449 323 LDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLT 402 (510)
Q Consensus 323 ~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T 402 (510)
+||+||+|||||||.|+||+++|++|+.||.+||+.++|..+|.++....+.|.++.+++|.+|+.+|.+..|.+|+|+|
T Consensus 324 Ldg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T 403 (501)
T KOG2323|consen 324 LDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLT 403 (501)
T ss_pred hccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEe
Confidence 99999999999999999999999999999999999999999999988778889999999999999999999999999999
Q ss_pred CCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHH
Q 010449 403 RGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 482 (510)
Q Consensus 403 ~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~ 482 (510)
+||++|+++|+|||.+||+++ | ..+..|||++|||||+|+++...+...|+++.|+++++|++++++
T Consensus 404 ~sg~~a~lvskyrP~~PIi~v-------t------~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~ 470 (501)
T KOG2323|consen 404 KSGYTAILVSKYRPSVPIISV-------T------RPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKK 470 (501)
T ss_pred cCcccHHHHhccCCCCCEEEE-------e------ccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999 4 889999999999999999999888889999999999999999999
Q ss_pred cCCCCCCCEEEEEeec----CCCcEEEEEEe
Q 010449 483 KGLCSPGDAVVALHRI----GVASVIKICIV 509 (510)
Q Consensus 483 ~g~v~~GD~VVvv~g~----g~tn~ikI~~v 509 (510)
.|+++.||.+|++.++ |.+|++++..+
T Consensus 471 ~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 471 KGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred cchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 9999999988888887 78999998753
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=6.3e-106 Score=834.05 Aligned_cols=344 Identities=56% Similarity=0.867 Sum_probs=311.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCC
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDG 98 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~ 98 (510)
+|||||||||||+|++++.|++|+++|||+||||||||++++|+++++++|++.++++++++|++||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CcEEecCCCEEEEEecCC--CCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCe-EEEEEeeCeEecC
Q 010449 99 -KPIQLKEGQEITVSTDYD--FKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGT-VRCRCENTAMLGE 174 (510)
Q Consensus 99 -~~i~l~~G~~v~l~~~~~--~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~-i~~~v~~~G~l~s 174 (510)
.+++|++||.|+|+.+.. ..++.+.|++||++|++.+++||.||+|||++.|+|++++ ++. ++|+|.+||.|++
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~--~~~~i~~~v~~~G~L~~ 158 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVD--GDSSIKCEVLNGGKLKS 158 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEE--STEEEEEEESS-EEEES
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEc--CCcceeEEeCCCCCccC
Confidence 369999999999998843 3466889999999999999999999999999999999996 445 9999999999999
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHH
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL 254 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~ 254 (510)
+||||+|+.++++|.||++|++|| +|++++|+|||++|||++++||.++|++|.+.|.+++|||||||++|++||++|+
T Consensus 159 ~KgVnlp~~~~~lp~LtekD~~di-~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~ 237 (348)
T PF00224_consen 159 RKGVNLPGVDLDLPALTEKDKEDI-KFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEIL 237 (348)
T ss_dssp SEBEEETTS---S-SS-HHHHHHH-HHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHH
T ss_pred CccceecccccccccCCHHHHHHH-HHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 255 RETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 255 ~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
+++|||||||||||+|+|++++|.+||+|+++|+++|||||+||||||||+++|+|||||++||+|||+||+||+|||+|
T Consensus 238 ~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~E 317 (348)
T PF00224_consen 238 EASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGE 317 (348)
T ss_dssp HHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHH
T ss_pred hhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccchHHHH
Q 010449 335 SAAGAYPEIAVKIMRRICIEAESSLDYRAVF 365 (510)
Q Consensus 335 ta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~ 365 (510)
||+|+||++||++|++||+++|+.++|.++|
T Consensus 318 Ta~G~~p~~~v~~~~~i~~~~E~~~~~~~~~ 348 (348)
T PF00224_consen 318 TAIGKYPVEAVKTMARIIREAEKYLDYRNVF 348 (348)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999999999988765
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=5.6e-104 Score=812.45 Aligned_cols=330 Identities=40% Similarity=0.633 Sum_probs=318.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCCc
Q 010449 21 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKP 100 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~ 100 (510)
++||||||||+|+++|.|++|+++|||+||||||||++++|.++++++|++.+ +++||+||+|||||+|.+++ ++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~-~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKG-EQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCC-Cc
Confidence 68999999999999999999999999999999999999999999999999865 48999999999999999975 47
Q ss_pred EEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCccc
Q 010449 101 IQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNL 180 (510)
Q Consensus 101 i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~vnl 180 (510)
+.|++|+.++|+.+ ...++.+.+++||++|++.+++||.||+|||++.|+|++++ ++.+.|+|.+||.|+++||||+
T Consensus 77 i~l~~G~~v~lt~~-~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~--~~~v~~~v~~gG~L~s~Kgvn~ 153 (352)
T PRK06739 77 ITLQAGDSFILHTQ-PVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVS--TDKIETKVKTGGNISSHKGVNL 153 (352)
T ss_pred EEecCCCEEEEecC-ccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEe--CCEEEEEEeeCcEEcCCCCeec
Confidence 99999999999987 35677889999999999999999999999999999999985 6789999999999999999999
Q ss_pred CCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCC-CCceEEEEecCHHHHhchHHHHhhcCe
Q 010449 181 PGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRETDS 259 (510)
Q Consensus 181 p~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~Dg 259 (510)
|+..+++|.||++|++|| +|++++|+|||++|||++++||+++|+++.+.| .+++|||||||++|++||++|++++||
T Consensus 154 pg~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 154 PGAIVRLPAITEKDKKDI-QFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred ccccCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 999999999999999999 999999999999999999999999999999875 589999999999999999999999999
Q ss_pred eEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCC
Q 010449 260 FMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGA 339 (510)
Q Consensus 260 I~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~ 339 (510)
|||||||||+|+|+++||.+||+|++.|+++|||||+||||||||++||+|||||++||+|||+||+||+|||+|||+|+
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccc
Q 010449 340 YPEIAVKIMRRICIEAESSL 359 (510)
Q Consensus 340 yP~~~V~~m~~i~~~aE~~~ 359 (510)
||++||++|++||+++|++.
T Consensus 313 yPveaV~~m~~I~~~aE~~~ 332 (352)
T PRK06739 313 HPIESVSTLRLVSEFAEHVK 332 (352)
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999754
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.7e-92 Score=759.60 Aligned_cols=339 Identities=32% Similarity=0.484 Sum_probs=319.8
Q ss_pred ccccccCCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecC
Q 010449 7 EGLLRDVPNDKRLPKTKIVCTLG-PASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDT 85 (510)
Q Consensus 7 ~~~~~~~p~~~~~~~tkIi~TiG-p~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl 85 (510)
+.+|++.|. .|+||||||+| |++++++.|++|+++||||||||||||++++|+++|+++|++++++|++|+|++||
T Consensus 129 ~~l~G~~~~---~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL 205 (608)
T PRK14725 129 EALLGPPPS---GRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDL 205 (608)
T ss_pred HHhcCCCCC---CCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 457775554 68999999999 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeecCCCC------------------------------------------------------------------
Q 010449 86 KGPEIRTGFLKDGK------------------------------------------------------------------ 99 (510)
Q Consensus 86 ~Gp~iR~g~~~~~~------------------------------------------------------------------ 99 (510)
+|||||||.+.+++
T Consensus 206 ~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R 285 (608)
T PRK14725 206 AGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKR 285 (608)
T ss_pred CCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccce
Confidence 99999999997643
Q ss_pred ----------------------------------------------cEEecCCCEEEEEecCCC----CCCcc--EEecC
Q 010449 100 ----------------------------------------------PIQLKEGQEITVSTDYDF----KGNEE--MITMS 127 (510)
Q Consensus 100 ----------------------------------------------~i~l~~G~~v~l~~~~~~----~~~~~--~i~v~ 127 (510)
.+.|+.||.++|+.+... .++.. .|+++
T Consensus 286 ~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t 365 (608)
T PRK14725 286 KLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCT 365 (608)
T ss_pred eeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEec
Confidence 589999999999987421 12345 89999
Q ss_pred CCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEee----CeEecCCCCcccCCccccCCCCChhcHHHHHhccC
Q 010449 128 YKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCEN----TAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV 203 (510)
Q Consensus 128 ~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~----~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~ 203 (510)
|+++++.+++||.|++|||+|.++|++++ ++.++|+|.+ ||.|+++||+|+|+..+++|.||++|++|| +|++
T Consensus 366 ~p~l~~~v~~G~~VlidDG~I~l~V~~~~--~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl-~f~~ 442 (608)
T PRK14725 366 LPEAFRAARVGERVWFDDGKIGAVVVKVE--ADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDL-AFVA 442 (608)
T ss_pred hHHHHHhcCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHH-HHHH
Confidence 99999999999999999999999999985 6789999999 999999999999999999999999999999 9999
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhccCC-CCceEEEEecCHHHHhchHHHHhhc-----CeeEEeCCcccCCCCchhHH
Q 010449 204 PNNIDMIALSFVRKGSDLVNVRKVLGPHA-KNIQLMSKVENQEGVVNFDDILRET-----DSFMVARGDLGMEIPVEKIF 277 (510)
Q Consensus 204 ~~g~d~I~~sfV~sa~dv~~vr~~l~~~~-~~~~IiakIEt~~av~nldeI~~~~-----DgI~IgrgDLg~e~~~~~v~ 277 (510)
++ +|||++|||++++||+++|+++.+.| .++.|||||||++|++||++|+.++ |||||||||||+|+|+++||
T Consensus 443 ~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp 521 (608)
T PRK14725 443 KH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLA 521 (608)
T ss_pred Hh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHH
Confidence 99 99999999999999999999998876 5899999999999999999999986 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 278 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 278 ~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
.+||+|++.|+++|||||+||||||||++||+|||||++|||||+ |+||+||| .|+||+|||++|++||+++|+
T Consensus 522 ~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~ 595 (608)
T PRK14725 522 EVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEE 595 (608)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999 999999999999999999997
Q ss_pred c
Q 010449 358 S 358 (510)
Q Consensus 358 ~ 358 (510)
+
T Consensus 596 ~ 596 (608)
T PRK14725 596 H 596 (608)
T ss_pred h
Confidence 5
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=4.4e-91 Score=744.23 Aligned_cols=338 Identities=28% Similarity=0.458 Sum_probs=317.6
Q ss_pred cccccCCCCCCCCCeEEEEec-CCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCC
Q 010449 8 GLLRDVPNDKRLPKTKIVCTL-GPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTK 86 (510)
Q Consensus 8 ~~~~~~p~~~~~~~tkIi~Ti-Gp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 86 (510)
.++++-|. .|+||||||| ||++++++.|++|+++||||||||||||++++|+++|+++|++++++|++|+|++||+
T Consensus 124 ~l~g~~~~---~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~ 200 (493)
T PRK08187 124 ELFGPRPA---ARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLA 200 (493)
T ss_pred HHcCCCcC---CCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46675444 6899999999 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeeecCCC-CcEEecCCCEEEEEecCCCC---CCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeE
Q 010449 87 GPEIRTGFLKDG-KPIQLKEGQEITVSTDYDFK---GNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTV 162 (510)
Q Consensus 87 Gp~iR~g~~~~~-~~i~l~~G~~v~l~~~~~~~---~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i 162 (510)
|||||||.+.++ +.+.|++||.++|+.+.... ++...|+++|+++++.+++||.|++|||+|.|+|++++ ++.+
T Consensus 201 GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~--~~~v 278 (493)
T PRK08187 201 GPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVG--PGGA 278 (493)
T ss_pred CCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEe--CCEE
Confidence 999999999864 35999999999999874322 24578999999999999999999999999999999995 6789
Q ss_pred EEEEe----eCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCC----CC
Q 010449 163 RCRCE----NTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHA----KN 234 (510)
Q Consensus 163 ~~~v~----~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~----~~ 234 (510)
.|+|. +||.|+++||||+|+..+++|.+|++|.+|| +|+++ ++|+|++|||++++||..+++++.+.+ .+
T Consensus 279 ~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL-~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~ 356 (493)
T PRK08187 279 LLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADL-DFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRK 356 (493)
T ss_pred EEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHH-HHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 99998 9999999999999999999999999999999 89998 699999999999999999999998765 48
Q ss_pred ceEEEEecCHHHHhchHHHHhhcC-----eeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010449 235 IQLMSKVENQEGVVNFDDILRETD-----SFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR 309 (510)
Q Consensus 235 ~~IiakIEt~~av~nldeI~~~~D-----gI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~ 309 (510)
+.|||||||++|++|+++|+.++| ||||||||||+++|++++|.+|++|+.+|+++|||+|+||||||||++||.
T Consensus 357 ~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~ 436 (493)
T PRK08187 357 LGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGL 436 (493)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCC
Confidence 899999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc
Q 010449 310 PTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 358 (510)
Q Consensus 310 PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 358 (510)
|||||++||||+ ||+||+||| .|+||++||++|++||.++|++
T Consensus 437 PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 437 PSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred CchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999998 999999999 9999999999999999999975
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=2.8e-27 Score=209.35 Aligned_cols=112 Identities=41% Similarity=0.649 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeC
Q 010449 379 LESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAE 458 (510)
Q Consensus 379 ~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~ 458 (510)
+|+++.+|+++|++++|++||++|.||+||+++|||||.|||+++ | ++++++|||+|+|||+|+++.
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav-------t------~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV-------T------PNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE-------E------SSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE-------c------CcHHHHhhhhcccceEEEEec
Confidence 489999999999999999999999999999999999999999999 4 899999999999999999987
Q ss_pred CCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCcEEEEEE
Q 010449 459 GSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI-----GVASVIKICI 508 (510)
Q Consensus 459 ~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g~-----g~tn~ikI~~ 508 (510)
+.. .+.+++++.++++++++|++++||.||+++|. |.||++||++
T Consensus 68 ~~~-----~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EFD-----KDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SHS-----HSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred ccc-----ccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 752 37999999999999999999999999999995 8999999974
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.67 E-value=1.9e-16 Score=157.84 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=112.7
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHh--------------------------ccCCCCceEEEEec
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVL--------------------------GPHAKNIQLMSKVE 242 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l--------------------------~~~~~~~~IiakIE 242 (510)
+++..|...| +.++|.|+++|++|+|+|++|++++.+.. ...|.++.++++||
T Consensus 68 Rvp~~~~~~i-~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IE 146 (249)
T TIGR03239 68 RPPWNEPVII-KRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIE 146 (249)
T ss_pred ECCCCCHHHH-HHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEEC
Confidence 3455677788 88999999999999999999999997543 33456889999999
Q ss_pred CHHHHhchHHHHhh--cCeeEEeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHh
Q 010449 243 NQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE 314 (510)
Q Consensus 243 t~~av~nldeI~~~--~DgI~IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraE 314 (510)
|++|++|+++|+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++. .++.
T Consensus 147 t~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~-----------~~~~-- 213 (249)
T TIGR03239 147 SQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL-----------APVE-- 213 (249)
T ss_pred CHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc-----------CCCH--
Confidence 99999999999987 69999999999999986 478888899999999999999862 1222
Q ss_pred HHHHHHHHHcCCceEEeccCCC
Q 010449 315 ATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 315 v~Dv~~av~~G~D~imLs~Eta 336 (510)
.+...++..|++.++++.|+.
T Consensus 214 -~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 -ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred -HHHHHHHHcCCCEEEEhHHHH
Confidence 355778899999999998864
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.66 E-value=2.3e-16 Score=157.83 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=112.3
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHH--------------------------hccCCCCceEEEEec
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKV--------------------------LGPHAKNIQLMSKVE 242 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~--------------------------l~~~~~~~~IiakIE 242 (510)
+++..|...| +.++|.|+++|++|+|+|++|++++.+. ++..|.++.++++||
T Consensus 75 Rvp~~~~~~i-~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IE 153 (256)
T PRK10558 75 RVPTNEPVII-KRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIE 153 (256)
T ss_pred ECCCCCHHHH-HHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEEC
Confidence 4455677788 8899999999999999999999998654 333456889999999
Q ss_pred CHHHHhchHHHHhh--cCeeEEeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHh
Q 010449 243 NQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE 314 (510)
Q Consensus 243 t~~av~nldeI~~~--~DgI~IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraE 314 (510)
|++|++|+++|+++ .|++++|++||+.++|. +++..+..+++.+|+++|||+++. .++-
T Consensus 154 t~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~~-- 220 (256)
T PRK10558 154 SQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APVE-- 220 (256)
T ss_pred CHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCCH--
Confidence 99999999999987 69999999999999986 478888899999999999999862 2232
Q ss_pred HHHHHHHHHcCCceEEeccCCC
Q 010449 315 ATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 315 v~Dv~~av~~G~D~imLs~Eta 336 (510)
.+...++..|++.++++.|+.
T Consensus 221 -~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 221 -ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred -HHHHHHHHcCCCEEEEchHHH
Confidence 335678889999999998864
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.62 E-value=9.8e-16 Score=153.91 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=110.7
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhc---------------------------cCCCCceEEEEecC
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG---------------------------PHAKNIQLMSKVEN 243 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~---------------------------~~~~~~~IiakIEt 243 (510)
...|...| +.++|.|+++|++|+|+|+++++++.+..+ ..|.++.+++||||
T Consensus 76 p~~~~~~i-~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt 154 (267)
T PRK10128 76 VEGSKPLI-KQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVES 154 (267)
T ss_pred CCCCHHHH-HHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECC
Confidence 34456788 889999999999999999999999977652 12457889999999
Q ss_pred HHHHhchHHHHhh--cCeeEEeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhH
Q 010449 244 QEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 244 ~~av~nldeI~~~--~DgI~IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv 315 (510)
++|++|+++|+++ .|++++|++||+.+++. +++..+.++++++|+++|||+++. .++.
T Consensus 155 ~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~-----------~~~~--- 220 (267)
T PRK10128 155 KTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-----------AVDP--- 220 (267)
T ss_pred HHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc-----------CCCH---
Confidence 9999999999998 69999999999999986 588888899999999999999862 1222
Q ss_pred HHHHHHHHcCCceEEeccCCC
Q 010449 316 TDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 316 ~Dv~~av~~G~D~imLs~Eta 336 (510)
.+...++..|++.+.++.|+.
T Consensus 221 ~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHHHHcCCcEEEEChHHH
Confidence 345678899999999998864
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.8e-15 Score=144.80 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=114.2
Q ss_pred CCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHH---------------------------HhccCCCCceEEE
Q 010449 187 LPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRK---------------------------VLGPHAKNIQLMS 239 (510)
Q Consensus 187 lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~---------------------------~l~~~~~~~~Iia 239 (510)
+-+++..+...| +..+|.|+..+.+|||+|+|+.+++.+ |+..+|+++.+++
T Consensus 71 vVR~p~g~~~~I-kq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 71 VVRPPVGDPVMI-KQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred eeeCCCCCHHHH-HHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 334556677788 788999999999999999999999855 3445678999999
Q ss_pred EecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCC
Q 010449 240 KVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPT 311 (510)
Q Consensus 240 kIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~Pt 311 (510)
||||++|++|||+|+++ .||||||++||+.++|. ++|..+.+.++.+.+++||..++-+ +.|
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~---------~~p- 219 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA---------ADP- 219 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc---------CCH-
Confidence 99999999999999998 69999999999999987 4777777899999999999987632 222
Q ss_pred hHhHHHHHHHHHcCCceEEeccCCC
Q 010449 312 RAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 312 raEv~Dv~~av~~G~D~imLs~Eta 336 (510)
.+....+..|+..+.+..||.
T Consensus 220 ----~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 ----ADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred ----HHHHHHHHhCCeEEEEeccHH
Confidence 345788899999999998874
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.55 E-value=1.4e-14 Score=144.45 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=107.9
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhcc-----C----------------------CCCceEEEEecCHH
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----H----------------------AKNIQLMSKVENQE 245 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~-----~----------------------~~~~~IiakIEt~~ 245 (510)
.|..+| +.++|.|+++|++|+|+|+++++++.+.++. + |.++.++++|||++
T Consensus 72 ~~~~~i-~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~ 150 (249)
T TIGR02311 72 GDPVLI-KQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETRE 150 (249)
T ss_pred CCHHHH-HHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHH
Confidence 344578 7899999999999999999999999988762 1 12577999999999
Q ss_pred HHhchHHHHhh--cCeeEEeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHH
Q 010449 246 GVVNFDDILRE--TDSFMVARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD 317 (510)
Q Consensus 246 av~nldeI~~~--~DgI~IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~D 317 (510)
|++|+++|+++ .|++++|++||+.++|. +++..+.+++..+|+.+||+.++.. ++. .+
T Consensus 151 av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-----------~~~---~~ 216 (249)
T TIGR02311 151 ALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-----------ADP---KL 216 (249)
T ss_pred HHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-----------CCH---HH
Confidence 99999999987 59999999999999996 4666788889999999999998632 222 34
Q ss_pred HHHHHHcCCceEEeccCCC
Q 010449 318 VANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 318 v~~av~~G~D~imLs~Eta 336 (510)
...++..|++.++++.|+.
T Consensus 217 ~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 217 ARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHcCCCEEEEchHHH
Confidence 4677899999999998864
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.44 E-value=1.1e-13 Score=135.56 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=85.5
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------CCCceEEEEecCHHHHhchHHHHhh--cCeeEEe
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRE--TDSFMVA 263 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~--~DgI~Ig 263 (510)
.-.+|| + +++.|+|+|++|+|+++++++.+.+.++.. +.++.++++|||++||+|+++|++. .|++++|
T Consensus 73 ~~~~Dl-~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G 150 (221)
T PF03328_consen 73 HIERDL-E-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFG 150 (221)
T ss_dssp HHHHHH-H-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-
T ss_pred hhhhhh-h-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeC
Confidence 345567 5 789999999999999999999999998743 2478999999999999999999965 3899999
Q ss_pred CCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 010449 264 RGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 264 rgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpviv 296 (510)
++||+.++|. +++..+.++++.+|+++|||++.
T Consensus 151 ~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 151 PADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 9999999987 47889999999999999997654
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.32 E-value=6.8e-12 Score=143.26 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=120.1
Q ss_pred CCCChhcHHHHHhccC-cCCCCE--EEEcCCCCHHHHHHHHHHhccCC-----CCceEEEEecCHHHHhchHHHHhhcCe
Q 010449 188 PTLTEKDKEDILRWGV-PNNIDM--IALSFVRKGSDLVNVRKVLGPHA-----KNIQLMSKVENQEGVVNFDDILRETDS 259 (510)
Q Consensus 188 p~lt~~D~~di~~~a~-~~g~d~--I~~sfV~sa~dv~~vr~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~~Dg 259 (510)
|.+-....+.| ..++ +.|+.. |++|||+++++++++++.++..+ .++.+++|||+++|+.|+|+|+++.|+
T Consensus 609 ~~lf~~qlraI-~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAI-KRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 44555667778 6677 889988 99999999999999999886432 348999999999999999999999999
Q ss_pred eEEeCCcccC-CCCc---------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH
Q 010449 260 FMVARGDLGM-EIPV---------------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 323 (510)
Q Consensus 260 I~IgrgDLg~-e~~~---------------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~ 323 (510)
++||+.||+. .++. +.|..+.++++++|+++|||+.++.+|-. . .-..+...+.
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~-----~p~~~~~l~~ 757 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----D-----YPEVVEFLVE 757 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----C-----CHHHHHHHHH
Confidence 9999999997 3332 57888899999999999999998765330 0 1123456778
Q ss_pred cCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 324 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 324 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
.|++.+..+.++ +..++..++++|+
T Consensus 758 ~G~~~ls~~~d~---------~~~~k~~i~~~e~ 782 (782)
T TIGR01418 758 EGIDSISLNPDA---------VLRTRLQVAEVEK 782 (782)
T ss_pred cCCCEEEECcch---------HHHHHHHHHHhcC
Confidence 999999998774 5566677777764
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.30 E-value=9e-12 Score=142.26 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=121.0
Q ss_pred CCChhcHHHHHhccCc-CCCCE--EEEcCCCCHHHHHHHHHHhccCC-----CCceEEEEecCHHHHhchHHHHhhcCee
Q 010449 189 TLTEKDKEDILRWGVP-NNIDM--IALSFVRKGSDLVNVRKVLGPHA-----KNIQLMSKVENQEGVVNFDDILRETDSF 260 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~-~g~d~--I~~sfV~sa~dv~~vr~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~~DgI 260 (510)
.+-....+.| ..+++ .|++. |++|||+++++++++++.++..| .++++++||||++|+.|+|+|+++.|++
T Consensus 617 ~lf~~qlraI-~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi 695 (795)
T PRK06464 617 EAFALECEAI-KRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGF 695 (795)
T ss_pred HHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEE
Confidence 4556777888 67888 79988 99999999999999999886432 3789999999999999999999999999
Q ss_pred EEeCCcccCC-CC---------------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc
Q 010449 261 MVARGDLGME-IP---------------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 324 (510)
Q Consensus 261 ~IgrgDLg~e-~~---------------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~ 324 (510)
+||+.||+.. ++ .+.|..+.++++++|+++|||++++.+|... .| ..+...+..
T Consensus 696 ~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~-----~p-----~~~~~l~~~ 765 (795)
T PRK06464 696 SIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD-----HP-----DFAEWLVEE 765 (795)
T ss_pred EECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cH-----HHHHHHHHC
Confidence 9999999973 43 2588888899999999999999987764410 02 223567788
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 358 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 358 (510)
|++.+..+.++ +-.++..++++|+.
T Consensus 766 G~~~ls~~~d~---------~~~~k~~i~~~~~~ 790 (795)
T PRK06464 766 GIDSISLNPDA---------VVDTWLAVAEVEKK 790 (795)
T ss_pred CCCEEEEcchh---------HHHHHHHHHHhHHH
Confidence 99999998664 55566777777764
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.26 E-value=2.4e-11 Score=123.78 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=102.0
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------CCCceEEEEecCHHHHhchHHHHhh---cCeeE
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRE---TDSFM 261 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~---~DgI~ 261 (510)
+....|| +..++.|+++|++|+|++++|++.+.+++... +.++.++++|||++|+.|+++|++. .|+++
T Consensus 72 ~~~~~di-~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 72 PFGLADI-KAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred hhHHHHH-HHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 3445577 67788999999999999999999998777531 2468899999999999999999964 47999
Q ss_pred EeCCcccCCCCc------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 262 VARGDLGMEIPV------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 262 IgrgDLg~e~~~------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
+|+.||+.++|. +.+..++.+++.+|+++|+|+|. +...+ -.=...=..+..++-..|++|=+.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id-~v~~~-----~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFD-TVYSD-----VNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCccc-CCccC-----cCCHHHHHHHHHHHHHcCCCceec
Confidence 999999999986 36888999999999999999864 22111 000011124556688889877544
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.17 E-value=8.5e-11 Score=129.84 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=112.1
Q ss_pred CCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhcc-----------CCCCceEEEEecCHHHHhchHHHHh
Q 010449 187 LPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----------HAKNIQLMSKVENQEGVVNFDDILR 255 (510)
Q Consensus 187 lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~-----------~~~~~~IiakIEt~~av~nldeI~~ 255 (510)
-|.+-....+.| ..+++.|...|++|||+++++++++++.++. .+.++.+.++|||+.|+.++|+|++
T Consensus 365 ~~~lf~~QlrAI-~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~ 443 (565)
T TIGR01417 365 REEILRTQLRAI-LRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK 443 (565)
T ss_pred CHHHHHHHHHHH-HHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh
Confidence 356667777888 7889999999999999999999999987763 2457899999999999999999999
Q ss_pred hcCeeEEeCCcccCC----------CC------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHH
Q 010449 256 ETDSFMVARGDLGME----------IP------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA 319 (510)
Q Consensus 256 ~~DgI~IgrgDLg~e----------~~------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~ 319 (510)
.+|+++||+.||+.. ++ .+.|..+.++++++|+++|||+.++.+|- .+ -..+.
T Consensus 444 ~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a--------~~---p~~~~ 512 (565)
T TIGR01417 444 EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA--------GD---ERAIP 512 (565)
T ss_pred hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC--------CC---HHHHH
Confidence 999999999999872 44 26888889999999999999999866543 11 13456
Q ss_pred HHHHcCCceEEec
Q 010449 320 NAVLDGTDCVMLS 332 (510)
Q Consensus 320 ~av~~G~D~imLs 332 (510)
..+..|++.+.++
T Consensus 513 ~l~~~G~~~lsv~ 525 (565)
T TIGR01417 513 LLLGLGLRELSMS 525 (565)
T ss_pred HHHHCCCCEEEEC
Confidence 7888999998886
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.08 E-value=3e-10 Score=125.59 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=111.3
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhcc-----------CCCCceEEEEecCHHHHhchHHHHhh
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGP-----------HAKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~-----------~~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|.+.....+.| ..+.+.|...|++|||.++++++++++.++. .+.++.+.++|||+.|+.++|+|++.
T Consensus 367 ~~~f~~QlrAi-lra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~ 445 (575)
T PRK11177 367 KEILHDQLRAI-LRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKE 445 (575)
T ss_pred HHHHHHHHHHH-HHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhh
Confidence 56667778888 7789999999999999999999999887652 24678999999999999999999999
Q ss_pred cCeeEEeCCcccCCC-----C-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 257 TDSFMVARGDLGMEI-----P-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~-----~-----------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
+|+++||+.||+..+ + .+.|..+.++++++|+++|||+.++.+|=. -|. -+.-
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~------dp~-----~~~l 514 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG------DER-----ATLL 514 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC------CHH-----HHHH
Confidence 999999999999833 2 268888899999999999999999988642 221 2345
Q ss_pred HHHcCCceEEec
Q 010449 321 AVLDGTDCVMLS 332 (510)
Q Consensus 321 av~~G~D~imLs 332 (510)
.+..|.|-+-.+
T Consensus 515 LlglGi~~lSm~ 526 (575)
T PRK11177 515 LLGMGLDEFSMS 526 (575)
T ss_pred HHHCCCCeEEEC
Confidence 778999998776
No 31
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.80 E-value=1.3e-07 Score=102.41 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=154.0
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHH---HHHHHHH-hcCCcEEEEecC
Q 010449 10 LRDVPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLN---NLRAAMH-NTQILCAVMLDT 85 (510)
Q Consensus 10 ~~~~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~---~ir~~~~-~~~~~v~i~~Dl 85 (510)
..++|.+.+.||+-| | ||.+ ..++.+.+.+|++++=++|--+....|+..|+ |++++.. +..+. +-
T Consensus 57 va~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~~-----~~ 126 (511)
T cd00727 57 VAPVPPDLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISFT-----SP 126 (511)
T ss_pred cCCCChhhcCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCcc-----CC
Confidence 347899999999887 3 7875 89999999999999999999988777776654 4444432 11100 11
Q ss_pred CCCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEE
Q 010449 86 KGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCR 165 (510)
Q Consensus 86 ~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~ 165 (510)
.| +.+.|+++..+.+.--. | +..++.++ .+ |
T Consensus 127 ~g-----------k~y~l~~~~~~l~VRpr---G----~hl~e~hv----------~~-d-------------------- 157 (511)
T cd00727 127 EG-----------KEYKLNDTPATLIVRPR---G----WHLPEKHV----------LV-D-------------------- 157 (511)
T ss_pred CC-----------ceeeeCCCCcEEEEecC---C----CCCCcchh----------hc-C--------------------
Confidence 11 12223222222221100 0 11111110 00 0
Q ss_pred EeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC----C---CCceEE
Q 010449 166 CENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLM 238 (510)
Q Consensus 166 v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~----~---~~~~Ii 238 (510)
|--+|+.-++.--+.-+|.+.+.+.+ .|+ ||.+|++++++|++.+.+.+... | ..+++.
T Consensus 158 -----------g~~~~~~l~Dfgl~~fhd~~~l~~~g--~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~ 223 (511)
T cd00727 158 -----------GEPVSGSLFDFGLYFFHNAKALLARG--SGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKAT 223 (511)
T ss_pred -----------CccCcchhhhHHHHHHhhHHHHHhcC--CCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Confidence 11234444444333445555552222 368 99999999999999998887632 2 368899
Q ss_pred EEecCHHHHhchHHHHhhc----CeeEEeCCcccCCCC----c-------h--------hHHH-HHHHHHHHHHHcCCCe
Q 010449 239 SKVENQEGVVNFDDILRET----DSFMVARGDLGMEIP----V-------E--------KIFL-AQKMMIYKCNLVGKPV 294 (510)
Q Consensus 239 akIEt~~av~nldeI~~~~----DgI~IgrgDLg~e~~----~-------~--------~v~~-~qk~ii~~~~~~gkpv 294 (510)
++|||+.|+-|++||+..+ .|+..||.|+..+++ . . .+.. .++.++.+|+++|+..
T Consensus 224 vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~A 303 (511)
T cd00727 224 VLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHA 303 (511)
T ss_pred EEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999763 599999999999882 1 0 2333 4677999999999998
Q ss_pred EEehhhhHhhhcCCCCCh-Hh----------HHHHHHHHHcCCceEEec
Q 010449 295 VTATQMLESMIKSPRPTR-AE----------ATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 295 ivaTqmLeSM~~~~~Ptr-aE----------v~Dv~~av~~G~D~imLs 332 (510)
|.. | ..-.|.+ .+ ..|-.....+|+||-++-
T Consensus 304 IdG------m-~a~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 304 MGG------M-AAQIPIKDDPAANEAALAKVRADKLREATAGHDGTWVA 345 (511)
T ss_pred ccc------h-hhcCCcccchhhHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 751 2 1112322 11 356667889999997773
No 32
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.76 E-value=2.2e-07 Score=100.61 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=152.7
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHH---HHHHHHH-hcCCcEEEEecC
Q 010449 10 LRDVPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLN---NLRAAMH-NTQILCAVMLDT 85 (510)
Q Consensus 10 ~~~~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~---~ir~~~~-~~~~~v~i~~Dl 85 (510)
..++|.+.+.||+-| | ||. +..++.+.+.+|++++=++|--+....|+.+++ |++++.. +..+
T Consensus 57 va~~p~~l~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~-------- 123 (511)
T TIGR01344 57 IAPIPPDLQDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQIDF-------- 123 (511)
T ss_pred cCCCChhhcCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCcCCC--------
Confidence 347899999999998 3 787 699999999999999999999988666655544 4555543 1111
Q ss_pred CCCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEE
Q 010449 86 KGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCR 165 (510)
Q Consensus 86 ~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~ 165 (510)
..| +.++.+.|+.+-.+.+.--. | +.++++.+ .+ |
T Consensus 124 ~~~-------~~gk~y~l~~~~~~liVRpr---G----~hl~e~hv----------~~-d-------------------- 158 (511)
T TIGR01344 124 TDP-------TSGKEYALNARLAVLIVRPR---G----WHLPERHL----------TI-D-------------------- 158 (511)
T ss_pred cCC-------CCCceeecCCCceEEEEecC---C----CCCCcchh----------cc-C--------------------
Confidence 111 00112222222111111100 0 11111111 00 0
Q ss_pred EeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC----C---CCceEE
Q 010449 166 CENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLM 238 (510)
Q Consensus 166 v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~----~---~~~~Ii 238 (510)
|--+|+.-+++--+.-.|.+.+.+ ...|+ +|.+|++++++|++.+.+.+... | ..+++.
T Consensus 159 -----------g~~~~~~l~Dfgl~~~hd~~~l~~--~g~Gp-~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~ 224 (511)
T TIGR01344 159 -----------GEAIPGSLFDFGLYFFHNARALLK--KGKGP-YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKAT 224 (511)
T ss_pred -----------CCcCchHHHHHHHHHHhhHHHHHh--CCCCC-EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEE
Confidence 112334444544445556555522 22354 99999999999999998877532 2 368899
Q ss_pred EEecCHHHHhchHHHHhh----cCeeEEeCCcccCCCC----c----------------hhHHHHHHHHHHHHHHcCCCe
Q 010449 239 SKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIP----V----------------EKIFLAQKMMIYKCNLVGKPV 294 (510)
Q Consensus 239 akIEt~~av~nldeI~~~----~DgI~IgrgDLg~e~~----~----------------~~v~~~qk~ii~~~~~~gkpv 294 (510)
++|||+.|+-|++||+.. +.|+..||.|+..++. . +-+...++.++.+|+++|+.+
T Consensus 225 vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~A 304 (511)
T TIGR01344 225 VLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHA 304 (511)
T ss_pred EEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999976 3599999999995443 1 233445788889999999998
Q ss_pred EEehhhhHhhhcCCCCCh--------Hh---HHHHHHHHHcCCceEEec
Q 010449 295 VTATQMLESMIKSPRPTR--------AE---ATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 295 ivaTqmLeSM~~~~~Ptr--------aE---v~Dv~~av~~G~D~imLs 332 (510)
|.- | ..-.|.+ |- ..|-.....+|+||-++-
T Consensus 305 IdG------m-~a~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 305 MGG------M-AAFIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred cCc------h-hccCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 751 2 1112332 11 355666889999997773
No 33
>PRK09255 malate synthase; Validated
Probab=98.71 E-value=3.2e-07 Score=99.88 Aligned_cols=244 Identities=16% Similarity=0.204 Sum_probs=151.7
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHH---HHHHHHHhcCCcEEEEecCC
Q 010449 10 LRDVPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLN---NLRAAMHNTQILCAVMLDTK 86 (510)
Q Consensus 10 ~~~~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~---~ir~~~~~~~~~v~i~~Dl~ 86 (510)
..++|.+.+.||.-| | ||.+ ..++.+.+.+|++++=++|--+....|+.+++ |++++...
T Consensus 78 va~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgad~~m~D~EDa~aP~wkn~i~gq~nl~~al~~------------ 140 (531)
T PRK09255 78 VAPIPADLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDSNAPTWDNVIDGQINLRDAVRG------------ 140 (531)
T ss_pred eCCCChhhcCCeeEE--e-CCCC--HHHHHHHhcCCCCEEEeccccCCCCCchHHHHHHHHHHHHHcC------------
Confidence 348899999999987 3 7876 89999999999999999999988666665554 44444331
Q ss_pred CCeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEE
Q 010449 87 GPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRC 166 (510)
Q Consensus 87 Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v 166 (510)
.+.. .=..|..+++.. +...+.| ++...+ .-.+-+
T Consensus 141 -------~i~~----~~~~Gk~y~l~~------~~~~l~V------------------------RprG~h----l~e~hv 175 (531)
T PRK09255 141 -------TISY----TNEAGKEYRLNP------KPAVLIV------------------------RPRGWH----LPEKHV 175 (531)
T ss_pred -------CCCc----cCCCCCeeecCC------CCceEEE------------------------ecCCCC----CCcchh
Confidence 0000 001232222210 0000100 000000 000000
Q ss_pred eeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC----C---CCceEEE
Q 010449 167 ENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLMS 239 (510)
Q Consensus 167 ~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~----~---~~~~Iia 239 (510)
..+ |--+|+.-++.--+.-.|.+.+.. ...|+ +|.+|++++++|++.+.+.+... | ..+++.+
T Consensus 176 ~vd-------G~~v~~~l~Dfgl~~fhd~~~l~~--~g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~v 245 (531)
T PRK09255 176 TVD-------GEPISGSLFDFALYFFHNAKELLA--KGSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATV 245 (531)
T ss_pred hcC-------CcccchhHHHHHHHHHhhHHHHHh--CCCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 000 112334434443334455555522 25677 99999999999999998887632 2 4688999
Q ss_pred EecCHHHHhchHHHHhhc----CeeEEeCCcccCCC----Cc----------------hhHHHHHHHHHHHHHHcCCCeE
Q 010449 240 KVENQEGVVNFDDILRET----DSFMVARGDLGMEI----PV----------------EKIFLAQKMMIYKCNLVGKPVV 295 (510)
Q Consensus 240 kIEt~~av~nldeI~~~~----DgI~IgrgDLg~e~----~~----------------~~v~~~qk~ii~~~~~~gkpvi 295 (510)
+|||+.|+-|++||+..+ .|+..||.|+..++ +. +-+...++.++.+|+++|...|
T Consensus 246 LIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AI 325 (531)
T PRK09255 246 LIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAM 325 (531)
T ss_pred EecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999764 59999999999662 21 2333447888899999999987
Q ss_pred EehhhhHhhhcCCCCCh-----------HhHHHHHHHHHcCCceEEec
Q 010449 296 TATQMLESMIKSPRPTR-----------AEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 296 vaTqmLeSM~~~~~Ptr-----------aEv~Dv~~av~~G~D~imLs 332 (510)
.- | ....|.+ .=..|-.....+|+||-++-
T Consensus 326 dG------m-~a~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi 366 (531)
T PRK09255 326 GG------M-AAFIPIKNDPEANEAALAKVRADKEREANDGHDGTWVA 366 (531)
T ss_pred Cc------h-hhcCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceec
Confidence 51 2 1123422 11255666889999997773
No 34
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.65 E-value=6e-08 Score=98.04 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=103.2
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCce---EEEEecCHHHHhchHHHHhhc---CeeEEeCC
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQ---LMSKVENQEGVVNFDDILRET---DSFMVARG 265 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~---IiakIEt~~av~nldeI~~~~---DgI~Igrg 265 (510)
+.-..|+ ......++|+|.+|+++++.|+..+...+.+...... +++.|||++|+.|..+|+..+ .|+.+|..
T Consensus 67 ~~g~~Dl-~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 67 PWGADDL-AAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred hhhHHHH-HHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 3455566 5567788999999999999999999999886543333 999999999999999999986 79999999
Q ss_pred cccCCCCc-------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 266 DLGMEIPV-------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 266 DLg~e~~~-------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
||..+++. ..+..+..+|+.+|+.+|++.+.. -. +=.++|.-- ..+..++...|+||-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-V~--~d~~d~~g~---~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-VY--TDINDPEGF---AREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-cc--cccCCHHHH---HHHHHHHHHcCCCcccc
Confidence 99888875 267789999999999999998642 10 001111111 25667788899988665
No 35
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.60 E-value=1.2e-06 Score=95.66 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=90.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhccC----C---CCceEEEEecCHHHHhchHHHHhhc----CeeEEeCCcccCCCCch
Q 010449 206 NIDMIALSFVRKGSDLVNVRKVLGPH----A---KNIQLMSKVENQEGVVNFDDILRET----DSFMVARGDLGMEIPVE 274 (510)
Q Consensus 206 g~d~I~~sfV~sa~dv~~vr~~l~~~----~---~~~~IiakIEt~~av~nldeI~~~~----DgI~IgrgDLg~e~~~~ 274 (510)
+--||.+|++++++|++.+.+.+... | ..+++++.|||+.|+.|+++|+..+ .|+..|+.||..+++..
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 34489999999999999999887542 2 3688999999999999999999873 49999999999988421
Q ss_pred -------------------h-HHHHHHHHHHHHHHcCCCeEE--ehhhh-HhhhcCCCCChHh-HHHHHHHHHcCCceEE
Q 010449 275 -------------------K-IFLAQKMMIYKCNLVGKPVVT--ATQML-ESMIKSPRPTRAE-ATDVANAVLDGTDCVM 330 (510)
Q Consensus 275 -------------------~-v~~~qk~ii~~~~~~gkpviv--aTqmL-eSM~~~~~PtraE-v~Dv~~av~~G~D~im 330 (510)
. +...++.++.+|+++|.++|. +.++- ..|-..+...-+- ..|...+..+|+||-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 2 556678899999999998742 22221 0010000001111 2566678899999976
Q ss_pred ec
Q 010449 331 LS 332 (510)
Q Consensus 331 Ls 332 (510)
.-
T Consensus 344 vi 345 (511)
T cd00480 344 VA 345 (511)
T ss_pred cc
Confidence 63
No 36
>PLN02626 malate synthase
Probab=98.46 E-value=4.4e-06 Score=90.65 Aligned_cols=245 Identities=14% Similarity=0.153 Sum_probs=148.6
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCee
Q 010449 11 RDVPNDKRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEI 90 (510)
Q Consensus 11 ~~~p~~~~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~i 90 (510)
.++|.+.+-||.-| | ||. +..++-+.+++|+++|=.+|--+....|..+++--.+..+....
T Consensus 82 a~~p~~L~dRrvEI--t-gP~--drkm~inalNSga~~~maDfEDs~sPtW~n~i~Gq~nl~~a~~~------------- 143 (551)
T PLN02626 82 APVPPAVADRRVEI--T-GPV--ERKMVINALNSGAKVFMADFEDSLSPTWENLMRGQVNLRDAVRG------------- 143 (551)
T ss_pred CCCChhhccceeee--c-CCC--cHHHHHHHHcCCCCEEEecCCccCCCcchhHHHHHHHHHHHhcC-------------
Confidence 58899999999998 4 996 48999999999999999999998777777776633332221111
Q ss_pred EeeecCCCCcEEe-cCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeC
Q 010449 91 RTGFLKDGKPIQL-KEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENT 169 (510)
Q Consensus 91 R~g~~~~~~~i~l-~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~ 169 (510)
.+.. .- .+|..++|. ++...+.| ..-
T Consensus 144 ---~i~~----~~~~~Gk~y~l~------~~~a~l~v----------------------------------------RpR 170 (551)
T PLN02626 144 ---TITF----TDKARGKVYKLN------DKTAKLFV----------------------------------------RPR 170 (551)
T ss_pred ---CCcc----ccCCCCceEeeC------CCcceEEE----------------------------------------ecC
Confidence 1100 00 123333331 00011111 111
Q ss_pred eEecCCCCcc-----cCCccccCCCCChhcHHHHHhccCcC--CC-CEEEEcCCCCHHHHHHHHHHhccC----C---CC
Q 010449 170 AMLGERKNVN-----LPGVVVDLPTLTEKDKEDILRWGVPN--NI-DMIALSFVRKGSDLVNVRKVLGPH----A---KN 234 (510)
Q Consensus 170 G~l~s~K~vn-----lp~~~~~lp~lt~~D~~di~~~a~~~--g~-d~I~~sfV~sa~dv~~vr~~l~~~----~---~~ 234 (510)
|-.-..|.+. +|+.-++.--+.-++.+.+ ++. |- -||.+|++++++|++...+.+... | ..
T Consensus 171 G~hl~E~hv~vdG~pv~g~L~DfgL~~fhn~~~l----~~~~~GsgpYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GT 246 (551)
T PLN02626 171 GWHLPEAHILVDGEPATGSLFDFGLYFFHNYAAF----RAKQGGFGPFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGS 246 (551)
T ss_pred cccCCcchhccCCCCCccHHHHHHHHHHhhHHHH----HhccCCCCceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 1111111111 2233333322222232232 222 43 499999999999999998877522 2 47
Q ss_pred ceEEEEecCHHHHhchHHHHhhc----CeeEEeCCcc----cCCCCc---------h----hHHHHHH---HHHHHHHHc
Q 010449 235 IQLMSKVENQEGVVNFDDILRET----DSFMVARGDL----GMEIPV---------E----KIFLAQK---MMIYKCNLV 290 (510)
Q Consensus 235 ~~IiakIEt~~av~nldeI~~~~----DgI~IgrgDL----g~e~~~---------~----~v~~~qk---~ii~~~~~~ 290 (510)
+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++. . ..+.++. .++.+|+++
T Consensus 247 IK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~r 326 (551)
T PLN02626 247 IRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKR 326 (551)
T ss_pred eEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999775 4999999999 222221 1 2455554 999999999
Q ss_pred CCCeEEehhhhHhh--hcCCCCChHhH----HHHHHHHHcCCceEEec
Q 010449 291 GKPVVTATQMLESM--IKSPRPTRAEA----TDVANAVLDGTDCVMLS 332 (510)
Q Consensus 291 gkpvivaTqmLeSM--~~~~~PtraEv----~Dv~~av~~G~D~imLs 332 (510)
|...|.. |---+ .+.|.++.+.. .|-.....+|+||-+.-
T Consensus 327 G~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wVi 372 (551)
T PLN02626 327 GVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAA 372 (551)
T ss_pred CCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeec
Confidence 9997641 22111 12233332222 46666899999998874
No 37
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.39 E-value=9.2e-07 Score=90.36 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=101.2
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-----------CCCceEEEEecCHHHHhchHHHHhh
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-----------AKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-----------~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|.+-....+.| ..+...|-=.|++|||++.+++.++++++.+. +.++++=++||+|.++-.++++++.
T Consensus 119 p~~f~~QlrAi-lra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAI-LRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHH-HHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHH-HHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 55566677777 55666666679999999999999999987643 2578999999999999999999999
Q ss_pred cCeeEEeCCcccC-----CC-----------CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 257 TDSFMVARGDLGM-----EI-----------PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 257 ~DgI~IgrgDLg~-----e~-----------~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
+|.+-||--||.. += -.+.+...-++++++|+++||||.++.+|-. +-.-+--
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~-----------~p~~~~~ 266 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS-----------DPEAIPL 266 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----------SHHHHHH
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----------CHHHHHH
Confidence 9999999777621 11 1257778889999999999999999999762 2233466
Q ss_pred HHHcCCceEEeccC
Q 010449 321 AVLDGTDCVMLSGE 334 (510)
Q Consensus 321 av~~G~D~imLs~E 334 (510)
.+..|.|.+..+..
T Consensus 267 Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 267 LLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHT-SEEEE-GG
T ss_pred HHHcCCCEEEECHH
Confidence 88899999988844
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.41 E-value=0.00038 Score=79.94 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCCChhcHHHHHhccCc-CCCCEEEEcCCCCHHHHHHHHHHhcc--------CC---CCceEEEEecCHHHHhchHHHHh
Q 010449 188 PTLTEKDKEDILRWGVP-NNIDMIALSFVRKGSDLVNVRKVLGP--------HA---KNIQLMSKVENQEGVVNFDDILR 255 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~-~g~d~I~~sfV~sa~dv~~vr~~l~~--------~~---~~~~IiakIEt~~av~nldeI~~ 255 (510)
|.+-....+.| ..+.. .|-=.|++|||.+.+++.++|+++.+ .| .++.+=++||+|.|+--+|++++
T Consensus 532 ~~~f~~QlrAi-lra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~ 610 (748)
T PRK11061 532 PEIFLIQVRAM-LRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLAS 610 (748)
T ss_pred HHHHHHHHHHH-HHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHH
Confidence 44445556666 34443 56667999999999999999998763 12 24779999999999999999999
Q ss_pred hcCeeEEeCCcccC-----CCC-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHH
Q 010449 256 ETDSFMVARGDLGM-----EIP-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA 319 (510)
Q Consensus 256 ~~DgI~IgrgDLg~-----e~~-----------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~ 319 (510)
.+|.+-||--||.. +=. .+.|..+.++++.+|+++||||.++.+|=. -|... -
T Consensus 611 ~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~------dp~~~-----~ 679 (748)
T PRK11061 611 RVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG------DPMGA-----L 679 (748)
T ss_pred hCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc------CHHHH-----H
Confidence 99999999888742 111 257778889999999999999999988642 23332 4
Q ss_pred HHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 320 NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 320 ~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
-.+..|.|.+-.+.. ++.-++++++..
T Consensus 680 ~L~glGi~~lS~~~~---------~i~~~k~~i~~~ 706 (748)
T PRK11061 680 LLIGLGYRHLSMNGR---------SVARVKYLLRHI 706 (748)
T ss_pred HHHHCCCcEEccChH---------HHHHHHHHHHhC
Confidence 577889998766522 344455555543
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.00085 Score=73.49 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=103.1
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhc-------cC----CCCceEEEEecCHHHHhchHHHHhh
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG-------PH----AKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~-------~~----~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|.+.....+.| ..|..+|-=.|++|||-+.++++.+|+.+. .. ++++.+=.|||+|.|.-.++.+++.
T Consensus 368 ~~if~tQLRAi-lRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lake 446 (574)
T COG1080 368 PEIFRTQLRAI-LRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKE 446 (574)
T ss_pred HHHHHHHHHHH-HHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHh
Confidence 45555666777 577888888999999999999999998774 12 2378899999999999999999999
Q ss_pred cCeeEEeCCcccC-----CCC-----------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 257 TDSFMVARGDLGM-----EIP-----------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 257 ~DgI~IgrgDLg~-----e~~-----------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
+|-+=||--||.. +=+ .+.|..+.++++..++++||||+++.+|= - -|. -+--
T Consensus 447 vDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA----g--D~~-----a~pl 515 (574)
T COG1080 447 VDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA----G--DPA-----ATPL 515 (574)
T ss_pred CCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc----c--Chh-----hHHH
Confidence 9999999888742 211 15777888999999999999999987753 1 111 1233
Q ss_pred HHHcCCceEEec
Q 010449 321 AVLDGTDCVMLS 332 (510)
Q Consensus 321 av~~G~D~imLs 332 (510)
.+..|.|-+-.|
T Consensus 516 LlGlGldElSms 527 (574)
T COG1080 516 LLGLGLDELSMS 527 (574)
T ss_pred HHhcCcchhccC
Confidence 667788776665
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.19 E-value=0.0018 Score=75.39 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=99.0
Q ss_pred CCCChhcHHHHHhccCc---CCCC---EEEEcCCCCHHHHHHHHHHhccC--------C--CCceEEEEecCHHHHhchH
Q 010449 188 PTLTEKDKEDILRWGVP---NNID---MIALSFVRKGSDLVNVRKVLGPH--------A--KNIQLMSKVENQEGVVNFD 251 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~---~g~d---~I~~sfV~sa~dv~~vr~~l~~~--------~--~~~~IiakIEt~~av~nld 251 (510)
|.+..-..+.|.+.+.+ .|.. -|++|||.+.+++..+|+.+.+. | .++.+=++||+|.|.-.+|
T Consensus 670 pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad 749 (856)
T TIGR01828 670 PEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTAD 749 (856)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHH
Confidence 55555666666333332 2532 69999999999999999887621 2 2478999999999999999
Q ss_pred HHHhhcCeeEEeCCcccC------------CC------------C-----chhHHHHHHHHHHHHHH--cCCCeEEehhh
Q 010449 252 DILRETDSFMVARGDLGM------------EI------------P-----VEKIFLAQKMMIYKCNL--VGKPVVTATQM 300 (510)
Q Consensus 252 eI~~~~DgI~IgrgDLg~------------e~------------~-----~~~v~~~qk~ii~~~~~--~gkpvivaTqm 300 (510)
+|++.+|.+-||--||.. .+ | .+.|..+.++++++|++ +|+|+.++.+|
T Consensus 750 ~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE~ 829 (856)
T TIGR01828 750 KIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGEH 829 (856)
T ss_pred HHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCCC
Confidence 999999999999555431 11 1 24577888999999999 89999998875
Q ss_pred hHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 301 LESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 301 LeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
- ..|. -+.-.+..|.|.+-.|.
T Consensus 830 a------~dp~-----~i~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 830 G------GDPS-----SIEFCHKIGLNYVSCSP 851 (856)
T ss_pred c------CCHH-----HHHHHHHCCCCEEEECh
Confidence 3 1222 23556778999988773
No 41
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.80 E-value=0.0093 Score=63.17 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=73.9
Q ss_pred hccCcCCCCEEEEcC-------CCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeCCcccCCC
Q 010449 200 RWGVPNNIDMIALSF-------VRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGDLGMEI 271 (510)
Q Consensus 200 ~~a~~~g~d~I~~sf-------V~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~IgrgDLg~e~ 271 (510)
+.+.+.|+|+|.+.. ..++.+...+.+++++. ++.||+ .|-|.+....+.+ .-+|+|++|+|-=+...
T Consensus 148 ~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~~ 223 (368)
T PRK08649 148 PTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAACT 223 (368)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcCCC
Confidence 667899999999843 22222344455555543 577887 8888887766665 45899999988621111
Q ss_pred Cc--h--hHHHHH--HHHHHHHHHc-------CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 272 PV--E--KIFLAQ--KMMIYKCNLV-------GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 272 ~~--~--~v~~~q--k~ii~~~~~~-------gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.. . .+|.+. .+..++++++ +.|+|.+.-+-. -.|++.|+..|||++|+.
T Consensus 224 t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 224 SRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVMLG 285 (368)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeeccc
Confidence 11 0 122211 2222233332 689998766442 379999999999999994
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.41 E-value=0.014 Score=68.07 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=100.2
Q ss_pred CCCCChhcHHHHHhccCc---CCCC---EEEEcCCCCHHHHHHHHHHhc--------cCC--CCceEEEEecCHHHHhch
Q 010449 187 LPTLTEKDKEDILRWGVP---NNID---MIALSFVRKGSDLVNVRKVLG--------PHA--KNIQLMSKVENQEGVVNF 250 (510)
Q Consensus 187 lp~lt~~D~~di~~~a~~---~g~d---~I~~sfV~sa~dv~~vr~~l~--------~~~--~~~~IiakIEt~~av~nl 250 (510)
.|.+.+-..+.|.+.+.+ .|.+ -|++|||.+.++++.+|+.+. +.| .+.++=.+||+|.|.--+
T Consensus 675 ~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~a 754 (879)
T PRK09279 675 YPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALTA 754 (879)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHhH
Confidence 366666677777444333 3533 499999999999999998763 223 257899999999999999
Q ss_pred HHHHhhcCeeEEeCCcccCC------------C------------Cc-----hhHHHHHHHHHHHHHH--cCCCeEEehh
Q 010449 251 DDILRETDSFMVARGDLGME------------I------------PV-----EKIFLAQKMMIYKCNL--VGKPVVTATQ 299 (510)
Q Consensus 251 deI~~~~DgI~IgrgDLg~e------------~------------~~-----~~v~~~qk~ii~~~~~--~gkpvivaTq 299 (510)
|+|++.+|.+-||--||..- + |+ +.|..+.+..+++|++ .|+|+.++.+
T Consensus 755 d~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICGE 834 (879)
T PRK09279 755 DEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICGE 834 (879)
T ss_pred HHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 99999999999996665321 1 11 3577788899999998 7999999877
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 300 MLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 300 mLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+= ..|. -+.-.+..|.|.+-.|
T Consensus 835 ~g------gdp~-----~i~~l~~lGld~vS~s 856 (879)
T PRK09279 835 HG------GDPA-----SIEFCHKVGLDYVSCS 856 (879)
T ss_pred Cc------cCHH-----HHHHHHHCCCCEEEEC
Confidence 43 2233 3456788899998887
No 43
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.30 E-value=0.015 Score=63.45 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhccCC-----------------------CCceEEEEecCHHHHhchHHHHhh-c---C
Q 010449 206 NIDMIALSFVRKGSDLVNVRKVLGPHA-----------------------KNIQLMSKVENQEGVVNFDDILRE-T---D 258 (510)
Q Consensus 206 g~d~I~~sfV~sa~dv~~vr~~l~~~~-----------------------~~~~IiakIEt~~av~nldeI~~~-~---D 258 (510)
.+-.|++||.++++|+.++..+.++.+ ..+.||..+||.+++.|.++|++. . +
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 567899999999999999988776543 135799999999999999999986 1 1
Q ss_pred ----eeEEeCCcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010449 259 ----SFMVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 259 ----gI~IgrgDLg~e~~~----~~v~~~qk~ii~~~~~~gkpviv 296 (510)
-||+||.|=+.+.|+ -.+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 799999999999997 37789999999999999999754
No 44
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=95.91 E-value=0.095 Score=57.76 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------C----CCceEEEEecCHHHHhchHHHHhh
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------A----KNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~----~~~~IiakIEt~~av~nldeI~~~ 256 (510)
|.+.--....+.+.+...|-=-|.+|+|.+.++++++++++... + ..++|=+++|-|..+-.+++++..
T Consensus 540 P~i~~~Q~RAmLrAs~g~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~ 619 (756)
T COG3605 540 PEIFRIQVRAMLRASAGTGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKR 619 (756)
T ss_pred hhHHHHHHHHHHHhhCCCcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhh
Confidence 44444444455344443444579999999999999999988532 2 357788999999999999999999
Q ss_pred cCeeEEeCCcccC-----CCCc-----------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 257 TDSFMVARGDLGM-----EIPV-----------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 257 ~DgI~IgrgDLg~-----e~~~-----------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
.|-+-||-.||.. +=+- +.+..+-|+|.++|..+|+||-++.+|- ..|--| .-
T Consensus 620 vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~ 688 (756)
T COG3605 620 VDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MA 688 (756)
T ss_pred CCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HH
Confidence 9999999988742 2221 3666788999999999999999988764 345444 55
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
.+..|++.+-.+ -|++|+ |++|-.-+.-+|.
T Consensus 689 LigLGfrslSMn-~~~v~~-----VK~ml~~ld~~~~ 719 (756)
T COG3605 689 LIGLGFRSLSMN-PRSVGP-----VKYLLRHLDLAEA 719 (756)
T ss_pred HHhcCcCccccC-cccccc-----HHHHHHhccHHHH
Confidence 678899998877 466776 7777665544443
No 45
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.77 E-value=0.077 Score=55.80 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred hhcHHHHHhccCcCCCCEEEE--cCCCCHHHHHHHHHHhccCCCCce-EEEEecCHHHHhchHHHHhhcCeeEEeCCccc
Q 010449 192 EKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQ-LMSKVENQEGVVNFDDILRETDSFMVARGDLG 268 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~-IiakIEt~~av~nldeI~~~~DgI~IgrgDLg 268 (510)
+.|.+.+ +..++.|+|+|++ ++..+...+..++++-+.. .++. |.--|-|.++.++|-+ .-+|+|-||=|-=+
T Consensus 107 ~~~~er~-~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~-~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 107 DDDFERA-EALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKF-PDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp TCHHHHH-HHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHS-TTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred HHHHHHH-HHHHHcCCCEEEccccCccHHHHHHHHHHHHHhC-CCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 3455566 5567889999888 6888888777776544433 3455 5558999999987544 23899999955322
Q ss_pred CCC-------CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 269 MEI-------PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 269 ~e~-------~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+-. |.+ -..+-.+..++|+.+++|+|--..+= --.|++.|+..|||++||.
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEES
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceeec
Confidence 221 112 34455677788888999998643321 2579999999999999993
No 46
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.75 E-value=0.12 Score=54.02 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=76.1
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCC-CHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEe--CCcc
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RGDL 267 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~-sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~Ig--rgDL 267 (510)
+.+.+.+ +..++.|+|+|.+++-. +.+...+..+.+++...++.|++ .+.|++...++.+ .-+|+|.++ +|--
T Consensus 93 ~~~~~~~-~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERA-EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHH-HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCcC
Confidence 4455666 67788999999886532 22334444444444444577775 7777666655433 238999984 3221
Q ss_pred --cCC---CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 268 --GME---IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 268 --g~e---~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
+.. .+.+.+ .+-..+.+.++..++|+|.+-.+- .-.|++.|+..|+|++|+
T Consensus 170 ~~t~~~~g~g~p~~-~~i~~v~~~~~~~~vpVIA~GGI~------------~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVPQA-TAVADVAAAARDYGVPVIADGGIR------------TSGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCCHH-HHHHHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHcCCCEEEe
Confidence 000 111222 233456677777899998644332 246889999999999999
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.74 E-value=0.057 Score=57.21 Aligned_cols=114 Identities=18% Similarity=0.333 Sum_probs=68.6
Q ss_pred hccCcCCCCEEEEc-------CCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeCCc-----
Q 010449 200 RWGVPNNIDMIALS-------FVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGD----- 266 (510)
Q Consensus 200 ~~a~~~g~d~I~~s-------fV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~IgrgD----- 266 (510)
+.+.+.|+|.|++. |+....+-..+.+++.+. ++.||+ .+-|.+....+-+ .-+|+||+|||-
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~~~~ 224 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGANTTR 224 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcccc
Confidence 66789999999975 222222334444544433 477776 7777766655544 358999998754
Q ss_pred --ccCCCCchhHHHHHHHHHHHHH----HcC---CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 267 --LGMEIPVEKIFLAQKMMIYKCN----LVG---KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 267 --Lg~e~~~~~v~~~qk~ii~~~~----~~g---kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
|+..+|. ..+-..+..+++ +.| +|+|.+..+-. -.|++.|+..|||++|+.
T Consensus 225 ~~lg~~~p~---~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t------------g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 225 LVLGIEVPM---ATAIADVAAARRDYLDETGGRYVHVIADGGIET------------SGDLVKAIACGADAVVLG 284 (369)
T ss_pred cccCCCCCH---HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC------------HHHHHHHHHcCCCEeeeH
Confidence 2222221 111122222222 233 89998766442 368999999999999994
No 48
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.68 E-value=0.036 Score=60.45 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=79.6
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhccCC--------------CCceEEEEecCHHHHhchHHHHhhc----------Ce
Q 010449 204 PNNIDMIALSFVRKGSDLVNVRKVLGPHA--------------KNIQLMSKVENQEGVVNFDDILRET----------DS 259 (510)
Q Consensus 204 ~~g~d~I~~sfV~sa~dv~~vr~~l~~~~--------------~~~~IiakIEt~~av~nldeI~~~~----------Dg 259 (510)
...+..+++||+++++|+.++..++++.+ ..+.|+..+||.+.+.|.++|++.- =-
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45677899999999999999987775443 2578999999999999999999751 28
Q ss_pred eEEeCCcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010449 260 FMVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 260 I~IgrgDLg~e~~~----~~v~~~qk~ii~~~~~~gkpviv 296 (510)
||+|+.|=+.+-|+ -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 38889999999999999998754
No 49
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.87 E-value=0.13 Score=60.51 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHhccCC--------CCceEEEEecCHHHHhchHHHHhh--c------------C--ee
Q 010449 205 NNIDMIALSFVRKGSDLVNVRKVLGPHA--------KNIQLMSKVENQEGVVNFDDILRE--T------------D--SF 260 (510)
Q Consensus 205 ~g~d~I~~sfV~sa~dv~~vr~~l~~~~--------~~~~IiakIEt~~av~nldeI~~~--~------------D--gI 260 (510)
..+..+++||+++++|+.++-.++++.| ..+.|+...||.+.++|.++|++. . + -|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 4677899999999999999988887655 157899999999999999999985 1 1 79
Q ss_pred EEeCCcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010449 261 MVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 261 ~IgrgDLg~e~~~----~~v~~~qk~ii~~~~~~gkpviv 296 (510)
|+|+.|=+.+-|+ -.+..+|+++.+.|+++|.++..
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999887 48889999999999999999865
No 50
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.40 E-value=0.4 Score=52.94 Aligned_cols=125 Identities=16% Similarity=0.253 Sum_probs=78.9
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCC--CCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEe--CC
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFV--RKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RG 265 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV--~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~Ig--rg 265 (510)
++.+.+.+ +..++.|+|.|.+... .+...++.++++ ++...++.|+| -+-|++..+.+-+ .-+|+|.+| +|
T Consensus 239 ~~~~~~~~-~~l~~ag~d~i~id~a~G~s~~~~~~i~~i-k~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERA-AALIEAGVDVLVVDSSQGNSIYQIDMIKKL-KSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHH-HHHHHCCCCEEEEecCCCCchHHHHHHHHH-HhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCC
Confidence 34556666 6778999999997754 444433333332 22224678888 6667666654432 238999864 55
Q ss_pred ccc-----CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 266 DLG-----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 266 DLg-----~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
--. ...|.+.+ .+-..+.+.|++.|.|+|...-+. --.|++.|+..|||++|+.
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 211 12232222 344567778899999998754433 2368899999999999995
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.84 E-value=0.57 Score=51.03 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=79.2
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCC--CCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEe--CC
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFV--RKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVA--RG 265 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV--~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~Ig--rg 265 (510)
.+.+.+.. +..++.|+|+|.+-.. .+..-++.+++ +++.-.++.|++ -+-|+++..++-+ .-+|+|-+| +|
T Consensus 222 ~~~~~~r~-~~L~~aG~d~I~vd~a~g~~~~~~~~i~~-i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G 297 (450)
T TIGR01302 222 REFDKERA-EALVKAGVDVIVIDSSHGHSIYVIDSIKE-IKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPG 297 (450)
T ss_pred chhHHHHH-HHHHHhCCCEEEEECCCCcHhHHHHHHHH-HHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCC
Confidence 45566666 5668899999988653 22322223332 333224677777 7888888766654 247999866 55
Q ss_pred cccC-----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 266 DLGM-----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 266 DLg~-----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
--.. ..+.+.+ .+...+.+.|++.+.|+|...-+- + -.|++.|+..|||++|+.
T Consensus 298 ~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~---------~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 298 SICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIR---------Y---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred cCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEEC
Confidence 2111 1222222 445667778888999988654433 2 368899999999999994
No 52
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.78 E-value=0.83 Score=47.75 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=80.1
Q ss_pred ChhcHHHHHhccCcC--CCCEEEE--cCCCCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 191 TEKDKEDILRWGVPN--NIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 191 t~~D~~di~~~a~~~--g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.+.|.+-+ +..++. ++|+|.+ ++=.|...++.++. +++.-.++.||+= |-|+++.+++-+ .-+|+|.||=|
T Consensus 105 ~~~d~er~-~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~-ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 105 SDNDLEKM-TSILEAVPQLKFICLDVANGYSEHFVEFVKL-VREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 56666666 555665 5998876 44444444444433 4444456888888 999999976543 45899998833
Q ss_pred cccCCCCc--hh----HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 266 DLGMEIPV--EK----IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 266 DLg~e~~~--~~----v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-=++..+- .. -..+-..+.++++..++|+|.-.-+= .-.||+.|+..|||++|+.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 22222222 11 22333456666667788888643322 2389999999999999996
No 53
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.68 E-value=1.6 Score=42.83 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=48.0
Q ss_pred ChhcHHH-HHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE----EecCHH-HHhchHHHHhh-cCeeEEe
Q 010449 191 TEKDKED-ILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS----KVENQE-GVVNFDDILRE-TDSFMVA 263 (510)
Q Consensus 191 t~~D~~d-i~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia----kIEt~~-av~nldeI~~~-~DgI~Ig 263 (510)
++..+.. . +.+.+.|+|||.+++..+.+.++++.+.+ .+.+++ ++.|.+ .++|+.+.++. ++|+.+|
T Consensus 141 ~~~~i~~~~-~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 141 DPDLIAYAA-RIGAELGADIVKTKYTGDAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CHHHHHHHH-HHHHHHCCCEEEecCCCCHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3344443 3 55788999999999877555555554432 233332 223333 57888888887 8999999
Q ss_pred CCcccCC
Q 010449 264 RGDLGME 270 (510)
Q Consensus 264 rgDLg~e 270 (510)
|.=+..+
T Consensus 215 ~~i~~~~ 221 (235)
T cd00958 215 RNIFQRP 221 (235)
T ss_pred hhhhcCC
Confidence 8766554
No 54
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=93.58 E-value=0.3 Score=57.87 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=84.6
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhccCC-----CCceEEEEecCHHHHhchHHHHhh--c-----------C----eeEEeC
Q 010449 207 IDMIALSFVRKGSDLVNVRKVLGPHA-----KNIQLMSKVENQEGVVNFDDILRE--T-----------D----SFMVAR 264 (510)
Q Consensus 207 ~d~I~~sfV~sa~dv~~vr~~l~~~~-----~~~~IiakIEt~~av~nldeI~~~--~-----------D----gI~Igr 264 (510)
+...++||.++++|+.++--+.++.| ..+.|+...||.++++|.++|++. + + -||+|+
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 34578899999999999988877643 357899999999999999999985 1 1 799999
Q ss_pred CcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 010449 265 GDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTR 312 (510)
Q Consensus 265 gDLg~e~~~----~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~Ptr 312 (510)
.|=+.+-|+ -.+..+|.++.+.|+++|..+...=-.=.|+-...-|+.
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~ 677 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQH 677 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChH
Confidence 999999987 488899999999999999998654333334444445544
No 55
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.51 E-value=0.63 Score=51.51 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=77.1
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCC--CCHH---HHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEe-
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFV--RKGS---DLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVA- 263 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV--~sa~---dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~Ig- 263 (510)
.+.+.+-+ +..++.|+|.|++--- .+.. .++++|+ ...+..||++ |-|++.-.++.+ .-+|+|.+|
T Consensus 246 ~~~~~~r~-~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~----~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~ 318 (505)
T PLN02274 246 RESDKERL-EHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK----TYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGM 318 (505)
T ss_pred CccHHHHH-HHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH----hCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 34555666 6678899999987543 3333 3444443 3346778775 999988776655 348999886
Q ss_pred -CCcccCC-----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 264 -RGDLGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 264 -rgDLg~e-----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+|--... .+.+.+ ..-..+-+.+++.++|+|....+- --.|+..|+..|||++|+.
T Consensus 319 g~G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 319 GSGSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCCccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 4411111 111111 122235556677899999865543 2368999999999999994
No 56
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=93.28 E-value=0.28 Score=56.76 Aligned_cols=113 Identities=23% Similarity=0.193 Sum_probs=89.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhc---cCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCC------------CCc
Q 010449 209 MIALSFVRKGSDLVNVRKVLG---PHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGME------------IPV 273 (510)
Q Consensus 209 ~I~~sfV~sa~dv~~vr~~l~---~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e------------~~~ 273 (510)
.+++||+++.++...+. ... ..+++.++..+||.|.++-..++|++..|++=+|..||..- ...
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 58899999999999888 433 11233889999999999999999999999999999998532 223
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 274 EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 274 ~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
+.+-.+.+..+..|+.+++.++++.|.-+- |.-| ..++..|.|+|+.+.
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~~~------p~~a-----~~~~e~Gi~~Vs~np 724 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAPSD------PHGA-----IFLVELGIDSVSLNP 724 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCCCC------cHHH-----HHHHHcCCCeEecCc
Confidence 578888899999999999999998884321 3222 558899999999763
No 57
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.93 E-value=1.2 Score=46.66 Aligned_cols=126 Identities=18% Similarity=0.067 Sum_probs=78.3
Q ss_pred ChhcHHHHHhccCc--CCCCEEEE--cCCCCHHHHHHHHHHhccCCCCce-EEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 191 TEKDKEDILRWGVP--NNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQ-LMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 191 t~~D~~di~~~a~~--~g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~-IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.+.|.+-+ +..++ .|+|+|.+ ++=.|...++.++. +++.-.++. |---+-|+++.++|-+ +-+|++-||=|
T Consensus 106 ~~~d~er~-~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 106 SDADFEKT-KQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 44455 59998875 44445555555544 333334444 4456999999877644 45899987733
Q ss_pred cccCCCCch----h--HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 266 DLGMEIPVE----K--IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 266 DLg~e~~~~----~--v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-=++-.... - -..+-.+..++|++.|+|+|--.- .. ---||+.|+..|||++||.
T Consensus 182 pGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG---------i~---~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG---------CT---VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC---------cc---cccHHHHHHHcCCCEEEeC
Confidence 322222110 1 223445677788889999885322 11 2379999999999999994
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.86 E-value=4.8 Score=39.87 Aligned_cols=197 Identities=17% Similarity=0.108 Sum_probs=117.6
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCH------HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeE
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKG------SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFM 261 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa------~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~ 261 (510)
.++..++..+.+...+.|++.|-+.+-.+. ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 346666666547777889999999988877 6666655556655555666666644 23344444444 36555
Q ss_pred EeC--Cccc----CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccC
Q 010449 262 VAR--GDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 334 (510)
Q Consensus 262 Igr--gDLg----~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~E 334 (510)
+.= .|.- ...+.+....--...++.++++|.++.+.+... ..+.-+..++.+++. +...|+|.+.|. +
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l~-D 167 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISLK-D 167 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEec-h
Confidence 541 1100 002233355556688889999999987764322 111246666776666 667899999986 6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 010449 335 SAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGG 405 (510)
Q Consensus 335 ta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG 405 (510)
|.=..+|.+.-+.++.+...... ....-|+++ .-.+|.+-...|-..+|+ +|=.|-.|
T Consensus 168 t~G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn-----------~~gla~an~laA~~aG~~-~id~s~~G 225 (265)
T cd03174 168 TVGLATPEEVAELVKALREALPD-VPLGLHTHN-----------TLGLAVANSLAALEAGAD-RVDGSVNG 225 (265)
T ss_pred hcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeCC-----------CCChHHHHHHHHHHcCCC-EEEecccc
Confidence 66668898888887776654432 111111110 113555555667778887 45555444
No 59
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.85 E-value=1.4 Score=45.65 Aligned_cols=112 Identities=13% Similarity=0.212 Sum_probs=69.3
Q ss_pred HHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCch
Q 010449 196 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVE 274 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~ 274 (510)
+.+ +.+++.+++.|.++|-...+.++.+++ . .+++++.+=|.+-. ....+. +|+|.+--.+-|-..+..
T Consensus 78 ~~~-~~~~~~~v~~v~~~~g~p~~~i~~lk~----~--g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~eagGh~g~~ 147 (307)
T TIGR03151 78 ELV-DLVIEEKVPVVTTGAGNPGKYIPRLKE----N--GVKVIPVVASVALA---KRMEKAGADAVIAEGMESGGHIGEL 147 (307)
T ss_pred HHH-HHHHhCCCCEEEEcCCCcHHHHHHHHH----c--CCEEEEEcCCHHHH---HHHHHcCCCEEEEECcccCCCCCCC
Confidence 445 667889999999988765545555544 2 47888988665433 333333 799987322333333221
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 275 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-...-+++. +..++|+|.+.-+- .-.|++.+...|+|++++.
T Consensus 148 ~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 148 TTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred cHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 1122223332 33479999876644 2456788888999999986
No 60
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.85 E-value=0.89 Score=49.99 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=83.0
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEc--CCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALS--FVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~s--fV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
..++.+.+.+ +..++.|+|.|++- +=.+. .+.+.-+.+++...+..||| -|-|.++..++.+ .-+|+|=||=|
T Consensus 223 ~~~~~~~~~a-~~Lv~aGvd~i~~D~a~~~~~-~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig 298 (479)
T PRK07807 223 GINGDVAAKA-RALLEAGVDVLVVDTAHGHQE-KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVG 298 (479)
T ss_pred ccChhHHHHH-HHHHHhCCCEEEEeccCCccH-HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECcc
Confidence 3455666666 66688999998874 32223 33333344554446789999 9999999988776 34899886633
Q ss_pred c--ccCC-----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 266 D--LGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 266 D--Lg~e-----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
- ...- .+.+ -..+-.++.++|++.|+|+|-... ..+. .|++.|+..|||++|+.
T Consensus 299 ~gsictt~~~~~~~~p-~~~av~~~~~~~~~~~~~via~gg---------i~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 299 PGAMCTTRMMTGVGRP-QFSAVLECAAAARELGAHVWADGG---------VRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred CCcccccccccCCchh-HHHHHHHHHHHHHhcCCcEEecCC---------CCCH---HHHHHHHHcCCCeeecc
Confidence 3 1111 1111 223445677777788999997544 2332 68899999999999984
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.38 E-value=3.7 Score=40.90 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=75.4
Q ss_pred hccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEE---eCCcccCCCCch
Q 010449 200 RWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV---ARGDLGMEIPVE 274 (510)
Q Consensus 200 ~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~I---grgDLg~e~~~~ 274 (510)
+.+.+.|+|+|.++- .++.++..++.+.+++.|-+..+...=+|+ ++.++.+++.+|++++ -+|. |..
T Consensus 95 ~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~-g~~---- 167 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPAT-GVP---- 167 (244)
T ss_pred HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCC-CCC----
Confidence 667889999999985 576788989999998888776666666664 5678999999998863 2444 322
Q ss_pred hHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 275 KIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
++.-...-++..++. .+|+.+- ...=|+ .++..+...|+|+++..
T Consensus 168 -~~~~~~~~i~~lr~~~~~~~i~v~---------gGI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 -LPVSVERNIKRVRNLVGNKYLVVG---------FGLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred -chHHHHHHHHHHHHhcCCCCEEEe---------CCcCCH---HHHHHHHHcCCCEEEEC
Confidence 233333344444443 3676542 223233 35566677899998875
No 62
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.28 E-value=1.6 Score=46.86 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=75.7
Q ss_pred ChhcHHHHHhccCcCCCCEEE--EcCCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeCCcc
Q 010449 191 TEKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGDL 267 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~--~sfV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~IgrgDL 267 (510)
++.+.+.+ +..++.|+|+|+ .+.=.+ +.+.+.-+.+++.-++..+++ -|-|.++..++.+. -+|+|.+|-|-=
T Consensus 151 ~~~~~~~v-~~lv~aGvDvI~iD~a~g~~-~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~G 226 (404)
T PRK06843 151 DIDTIERV-EELVKAHVDILVIDSAHGHS-TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPG 226 (404)
T ss_pred CHHHHHHH-HHHHhcCCCEEEEECCCCCC-hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCC
Confidence 34455666 666889999999 444222 334333334444334555644 78898888776652 489999874432
Q ss_pred cC-------CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 268 GM-------EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 268 g~-------e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+. ..+.+.+. +-..+.+.+++.+.|+|....+- .-.|++.|+..|||++|+.
T Consensus 227 s~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIAdGGI~------------~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 227 SICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIADGGIR------------FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred cCCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 21 11222211 22233455667789998754422 2368899999999999994
No 63
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.02 E-value=1.3 Score=46.27 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=75.6
Q ss_pred CChhcHHHHHhccCcCC--CCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEeC
Q 010449 190 LTEKDKEDILRWGVPNN--IDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVAR 264 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g--~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~Igr 264 (510)
.++.|.+.+ ...++.| +|+|.+-- =.|...++.++.+ ++.-+.+.+|++ +-|.+....+.+ .-+|+|.++=
T Consensus 91 ~t~e~~~r~-~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i-~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~ 166 (321)
T TIGR01306 91 VKACEYEFV-TQLAEEALTPEYITIDIAHGHSNSVINMIKHI-KTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGI 166 (321)
T ss_pred CCHHHHHHH-HHHHhcCCCCCEEEEeCccCchHHHHHHHHHH-HHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 477777777 5667777 69887643 3334444444443 222256778888 998888777654 2379999873
Q ss_pred CcccCC-----CCchhHHHHH-HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 265 GDLGME-----IPVEKIFLAQ-KMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 265 gDLg~e-----~~~~~v~~~q-k~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
|-=+.. .+. .++..| ..|.+.+.+..+|+|.-.-+- --.|++.|+..|||++|+.
T Consensus 167 G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 221111 111 111112 223333344578877644332 2379999999999999996
No 64
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.00 E-value=3.3 Score=41.57 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=42.5
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEec--C-HHHHhchHHHHhh-cCeeEEeCCcccC
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE--N-QEGVVNFDDILRE-TDSFMVARGDLGM 269 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIE--t-~~av~nldeI~~~-~DgI~IgrgDLg~ 269 (510)
+.+.+.|+|||..||..+ ++.++++.....-.+..+.-|= | .++++|+.++++. ++|+.++|.=+..
T Consensus 163 ~~a~~~GADyikt~~~~~---~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 163 RLGAELGADIVKTPYTGD---IDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHCCCEEeccCCCC---HHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 456688999999998754 4444444432222233333342 2 4467889988887 7899998765543
No 65
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.94 E-value=1.8 Score=43.86 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 218 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 218 a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+.++.++++.++. ++.+++-+-....++-+.+ .+|.+.||-+++. +..++.++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEEe
Confidence 56677777777654 5788888888777766654 4799999977663 234788888999999998
Q ss_pred hhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEec
Q 010449 298 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 332 (510)
Q Consensus 298 TqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs 332 (510)
|.|. +|-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7765 46688888888775 587667775
No 66
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.90 E-value=1.7 Score=43.69 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQ 299 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTq 299 (510)
.++.++++.++. ++.+++-+-+.+.++-+.+ .+|.+.||.+++. |..+++++.+.||||++.|.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEEeCC
Confidence 455555555443 5778887777666655544 6999999977763 35677788889999999765
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHH-cCCceEEecc
Q 010449 300 MLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSG 333 (510)
Q Consensus 300 mLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs~ 333 (510)
+ .+|-.|+...++.+. .|..=++|..
T Consensus 131 ~--------~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 131 L--------MATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred C--------CCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 4 467789988888776 5776677763
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.87 E-value=7.3 Score=39.44 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=97.9
Q ss_pred CChhcHHHHHhccCcCCCCEEEEcCCCCHHH----------HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh---
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALSFVRKGSD----------LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--- 256 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~sfV~sa~d----------v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 256 (510)
++..++..|.+..-+.|+|+|=+.|..+.++ .+.++++......+.++.+..-.... +.++|...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~ 94 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND--DIDLLEPASGS 94 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC--CHHHHHHHhcC
Confidence 5888888886777789999998887655321 34444444332236788888766542 23334332
Q ss_pred -cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccC
Q 010449 257 -TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 334 (510)
Q Consensus 257 -~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~E 334 (510)
.|.|-++ .+...+ ...+++++.++++|..|.+. +. ...+-+..++.+++. +...|+|.+.|. +
T Consensus 95 gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~--~~----~a~~~~~~~~~~~~~~~~~~g~~~i~l~-D 159 (266)
T cd07944 95 VVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN--LM----AISGYSDEELLELLELVNEIKPDVFYIV-D 159 (266)
T ss_pred CcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE--EE----eecCCCHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 3666554 233333 34467788899999887653 22 223356777777775 455799999997 8
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 010449 335 SAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 335 ta~G~yP~~~V~~m~~i~~~a 355 (510)
|.=..+|.+.-+.++.+....
T Consensus 160 T~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 888889999988888876544
No 68
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.83 E-value=3.8 Score=41.59 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 218 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 218 a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+.++.++++..+. .+.+++-+-.+..++-+.+ .+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 56777788887654 5888888888777766655 47999999776632 44667777899999997
Q ss_pred hhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEe--ccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCC
Q 010449 298 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVML--SGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPL 374 (510)
Q Consensus 298 TqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imL--s~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~ 374 (510)
|.|. .|-.|+...+..+. .|..-++| .|=.+...||.+.+.+-.-.... +. + +.|.
T Consensus 141 ~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk-~~-~-----------~~pV 199 (266)
T PRK13398 141 RGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIK-EL-S-----------HLPI 199 (266)
T ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHH-hc-c-----------CCCE
Confidence 6654 45567777777665 57754555 33223458996666543222111 11 0 0111
Q ss_pred CCCchHH-----HHHHHHHHHHhcCCcEEEEEcC
Q 010449 375 PMSPLES-----LASSAVRTANKARAKLIVVLTR 403 (510)
Q Consensus 375 ~~~~~~~-----ia~~av~~A~~~~a~aIvv~T~ 403 (510)
-.++.++ .......+|..+||+.+++-++
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEEecc
Confidence 0111121 3356677778889998887643
No 69
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.63 E-value=1.3 Score=49.02 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=67.7
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCH--HHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeCCc-----
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKG--SDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVARGD----- 266 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa--~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~IgrgD----- 266 (510)
.+-+ +..++.|+|+|.+.-..-. ..++.++.+-...+.++.|+| -|.|+++.+.+-+ .-+|+|.||-|-
T Consensus 244 ~~ra-~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~ 320 (502)
T PRK07107 244 AERV-PALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICI 320 (502)
T ss_pred HHHH-HHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCcc
Confidence 3444 5667899999998711111 013333332222222355555 6889888866543 348999996432
Q ss_pred ----ccCCCCchhHHHHHHHHHHHHH----HcC--CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 267 ----LGMEIPVEKIFLAQKMMIYKCN----LVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 267 ----Lg~e~~~~~v~~~qk~ii~~~~----~~g--kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+|+-.| .+ .+-..+.++++ +.| +|+|.-.- .. --.||+.|+..|||++|+.
T Consensus 321 tr~~~~~g~~--~~-~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 321 TREQKGIGRG--QA-TALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cccccCCCcc--HH-HHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 222222 11 12223333333 347 78876322 21 2379999999999999994
No 70
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.32 E-value=8 Score=40.98 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=102.0
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEecC-HHHHhchHHHHhh-cCeeEE--e
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVVNFDDILRE-TDSFMV--A 263 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIEt-~~av~nldeI~~~-~DgI~I--g 263 (510)
.++..++..|.+...+.|++.|=+.| +.+.++.+.++.+.. .+.+..+.+.+-. .+. ++..++. .|.|.+ +
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~~~~d---i~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARALKKD---IDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEcccCHHH---HHHHHHcCcCEEEEEEc
Confidence 35778888886777889999987754 566777766666554 3456667766632 233 3333333 464444 3
Q ss_pred CCcccC----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCCCC
Q 010449 264 RGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAAG 338 (510)
Q Consensus 264 rgDLg~----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~G 338 (510)
-.|+-. ..+.++........++.|+++|..+.+.- ....+-+.+.+.+++. +...|+|.+.|. +|.=.
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~ 166 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAGADRINIA-DTVGV 166 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCc
Confidence 333311 12345556667788999999999876642 2334556666766666 466799999997 78778
Q ss_pred CCHHHHHHHHHHHHHH
Q 010449 339 AYPEIAVKIMRRICIE 354 (510)
Q Consensus 339 ~yP~~~V~~m~~i~~~ 354 (510)
.+|.+.-+.++.+...
T Consensus 167 ~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 167 LTPQKMEELIKKLKEN 182 (363)
T ss_pred cCHHHHHHHHHHHhcc
Confidence 8999988888887644
No 71
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.32 E-value=9.9 Score=38.09 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=96.8
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCH-HHHHHHHHHhccCCCCceEEEEe-cCHHHHhchHHHHhh-cCeeEEe--
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKG-SDLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE-TDSFMVA-- 263 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa-~dv~~vr~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-~DgI~Ig-- 263 (510)
.++..++..+.+...+.|++.|=+.|-... .+.+.++.+.+ .+.+..+.+-. -+.++++ ...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~~~~~~~~~~~r~~~~~v~---~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-LGLPARLIVWCRAVKEDIE---AALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEeccCCHHHHH---HHHhCCcCEEEEEEe
Confidence 457777777767778899999877554443 33344544433 33455555554 3444443 33332 3544432
Q ss_pred CCcc----cCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCCCCC
Q 010449 264 RGDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGESAAG 338 (510)
Q Consensus 264 rgDL----g~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Eta~G 338 (510)
-.|. -.....++.....+.+++.|+++|..+.+.. ...++-+..++.+++.. ...|+|.+.|. +|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCC
Confidence 2221 0112234445566788999999999876532 24445667788777774 56799999997 88888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 010449 339 AYPEIAVKIMRRICIEA 355 (510)
Q Consensus 339 ~yP~~~V~~m~~i~~~a 355 (510)
.+|.+.-+.+..+.+..
T Consensus 165 ~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 165 LDPFTTYELIRRLRAAT 181 (259)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 89999888888776543
No 72
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.25 E-value=3 Score=40.77 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=66.5
Q ss_pred HHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCch
Q 010449 196 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVE 274 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~ 274 (510)
+.+ +.+.+.|+|+|.++.-.+.+.++.+++ .++.++..+.+.+- +..+.+. +|+|.+....-+-.....
T Consensus 71 ~~~-~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~~~---~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 71 ALL-EVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSVEE---ARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHH-HHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCHHH---HHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 345 566788999999998866555555543 25778888877533 3444433 688876432211111111
Q ss_pred hHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 275 KIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
. ......++.+++ .++|++.+-- .-+ ..|+..++..|+|+++++
T Consensus 141 ~--~~~~~~i~~i~~~~~~Pvi~~GG---------I~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 141 D--IGTFALVPEVRDAVDIPVIAAGG---------IAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred c--cCHHHHHHHHHHHhCCCEEEECC---------CCC---HHHHHHHHHcCCcEEEEc
Confidence 0 011233333333 3789987543 222 356777788999999996
No 73
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.15 E-value=12 Score=39.93 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=100.6
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCH-HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCee--EEeC
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKG-SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSF--MVAR 264 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa-~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI--~Igr 264 (510)
.++..++..|.+...+.|+|.|=+.|-... ++.+.++.+.+ .+.+..+++-.-. -.+.++..++. .|.| +++-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~-~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK-LGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh-cCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 357778777767777899999877554433 34455555433 3445566665322 12234444433 4543 3333
Q ss_pred Cccc----CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCCCCCC
Q 010449 265 GDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGESAAGA 339 (510)
Q Consensus 265 gDLg----~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Eta~G~ 339 (510)
.|+- .....++.....+..++.++++|..+.+. .....+-+...+.+++.+ ...|+|.|.|. +|.=..
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~ 171 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGIL 171 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCC
Confidence 3431 11234566666778899999999988764 224555667777777774 55799999997 888888
Q ss_pred CHHHHHHHHHHHHHHH
Q 010449 340 YPEIAVKIMRRICIEA 355 (510)
Q Consensus 340 yP~~~V~~m~~i~~~a 355 (510)
.|.+.-++++.+.+..
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999988887654
No 74
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.98 E-value=3.3 Score=43.26 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=78.8
Q ss_pred cHHHHHhccCcCCCCEEEEcCCC--C-----H----HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-----c
Q 010449 194 DKEDILRWGVPNNIDMIALSFVR--K-----G----SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----T 257 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~--s-----a----~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~ 257 (510)
+..++.+.+.+.|+|+|-+.+-. . . +.+.++-+.+++. .++.|++|+ ++ .+.++.++++. +
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~ 191 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL-SP-YFSNLANMAKRLDAAGA 191 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe-CC-CchhHHHHHHHHHHcCC
Confidence 33333355566789999884321 1 1 1121222222221 357899997 33 23344555543 5
Q ss_pred CeeEEeCCcccCCCCc--------------hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH
Q 010449 258 DSFMVARGDLGMEIPV--------------EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 323 (510)
Q Consensus 258 DgI~IgrgDLg~e~~~--------------~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~ 323 (510)
|||.+.-.=.+..+.. .-.+...+.+-...+..+.|+|-..-+- -..|+..++.
T Consensus 192 dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~ 259 (334)
T PRK07565 192 DGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLL 259 (334)
T ss_pred CeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHH
Confidence 8887642212222111 1234445555444455578887654433 2457888889
Q ss_pred cCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhccc
Q 010449 324 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSL 359 (510)
Q Consensus 324 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 359 (510)
.|||++++...--.. -| +.+.+|+++.+.+.
T Consensus 260 aGA~~V~v~t~~~~~-g~----~~~~~i~~~L~~~l 290 (334)
T PRK07565 260 AGADVVMIASALLRH-GP----DYIGTILRGLEDWM 290 (334)
T ss_pred cCCCceeeehHHhhh-Cc----HHHHHHHHHHHHHH
Confidence 999999998443321 13 56777777777654
No 75
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=90.66 E-value=0.77 Score=53.45 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhccCCC--------CceEEEEecCHHHHhchHHHHhhc----------------CeeE
Q 010449 206 NIDMIALSFVRKGSDLVNVRKVLGPHAK--------NIQLMSKVENQEGVVNFDDILRET----------------DSFM 261 (510)
Q Consensus 206 g~d~I~~sfV~sa~dv~~vr~~l~~~~~--------~~~IiakIEt~~av~nldeI~~~~----------------DgI~ 261 (510)
.+.-.++|+++++.||.++--+.++.|- .+.|+...||.+.++|..+|++.. --||
T Consensus 363 ~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVM 442 (794)
T PF00311_consen 363 AIGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVM 442 (794)
T ss_dssp CEEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEE
T ss_pred hHHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEE
Confidence 3445789999999999999888877652 378999999999999999999841 1799
Q ss_pred EeCCcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 010449 262 VARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 262 IgrgDLg~e~~~----~~v~~~qk~ii~~~~~~gkpviv 296 (510)
+|-.|=+-+-|. -.+..+|+++.+.|+++|..+.+
T Consensus 443 lGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 443 LGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp EECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred eccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 999887777776 48899999999999999998865
No 76
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.33 E-value=3.5 Score=39.28 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=75.9
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccC---CCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM---EIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~---e~~~~~v 276 (510)
+.+.+.|+|+|.++--.+.+. .+..+.+... +..+..-+......+.+.++...+|.+.++.-+-|. ..+...+
T Consensus 74 ~~~~~~g~dgv~vh~~~~~~~-~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 150 (211)
T cd00429 74 EAFAKAGADIITFHAEATDHL-HRTIQLIKEL--GMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVL 150 (211)
T ss_pred HHHHHcCCCEEEECccchhhH-HHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHH
Confidence 555689999999887766333 3334444433 344444453323456677777778988877433332 2222211
Q ss_pred HHHHHHHHHHHH--HcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 277 FLAQKMMIYKCN--LVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 277 ~~~qk~ii~~~~--~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
..+ +++.+... ....|+.++.-+ . ..++..+...|+|++...+.-..-..|.++++.+
T Consensus 151 ~~i-~~~~~~~~~~~~~~pi~v~GGI--------~-----~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 151 EKI-RKLRELIPENNLNLLIEVDGGI--------N-----LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHH-HHHHHHHHhcCCCeEEEEECCC--------C-----HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 111 12211111 224788765431 1 1456778889999999987766667787777654
No 77
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.25 E-value=4.2 Score=43.15 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=65.5
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 219 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 219 ~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
+....++++.++. ++.+++-+-..+.++-+.+ .+|.+.||-+++.- ..++.++.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 5666677776554 5778887777776655544 48999999877743 356777888999999987
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEec
Q 010449 299 QMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLS 332 (510)
Q Consensus 299 qmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs 332 (510)
.|. +|-.|+...++.+. .|.+-++|.
T Consensus 233 G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 764 56688888887766 577667775
No 78
>PRK00915 2-isopropylmalate synthase; Validated
Probab=90.22 E-value=20 Score=39.80 Aligned_cols=157 Identities=14% Similarity=0.168 Sum_probs=105.1
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh---c--C--ee
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE---T--D--SF 260 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~---~--D--gI 260 (510)
.+|..++..|.+...+.|+|.|=+-| .-++.|.+.++.+.. ...+..+.+..-.. .+.++..++. + + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 36788888886777889999998866 557888888877654 33566777666332 2234443322 2 2 35
Q ss_pred EEeCCcccC----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCC
Q 010449 261 MVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGES 335 (510)
Q Consensus 261 ~IgrgDLg~----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Et 335 (510)
+++-.|+-. ....+++.....+.++.|+++|.-|.+..+ ...+-+...+.+++.+ ...|+|.+.|. +|
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DT 171 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIP-DT 171 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-cC
Confidence 555555522 233466677778899999999998865322 2233344556666664 55699999997 88
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 010449 336 AAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 336 a~G~yP~~~V~~m~~i~~~a 355 (510)
.=+..|.+.-+.++.+.+..
T Consensus 172 vG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 172 VGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 88899999999988887654
No 79
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.18 E-value=7.7 Score=39.50 Aligned_cols=128 Identities=14% Similarity=0.199 Sum_probs=72.4
Q ss_pred hhcHHHHHhccCcCCCCEEEEc------------CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh---
Q 010449 192 EKDKEDILRWGVPNNIDMIALS------------FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--- 256 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~s------------fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--- 256 (510)
..|..+..+.+.+.|+|+|=+. +-.+++.+.++-+.+++. .++.|++||= + ..++..++++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~-~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLT-P-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeC-C-CchhHHHHHHHHHH
Confidence 3444444466677899999774 335566666665555543 2678999982 2 12345555542
Q ss_pred --cCeeEEe-----CC-ccc-----------CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHH
Q 010449 257 --TDSFMVA-----RG-DLG-----------MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD 317 (510)
Q Consensus 257 --~DgI~Ig-----rg-DLg-----------~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~D 317 (510)
+|+|.+- +. |+. .--|....+...+.+-...+..+.|+|....+- + ..|
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~---------~---~~d 245 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA---------S---GED 245 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC---------C---HHH
Confidence 5887652 11 221 001111122233333333444589988755533 2 356
Q ss_pred HHHHHHcCCceEEeccC
Q 010449 318 VANAVLDGTDCVMLSGE 334 (510)
Q Consensus 318 v~~av~~G~D~imLs~E 334 (510)
+..++..|+|++++..-
T Consensus 246 a~~~l~~GAd~V~igra 262 (296)
T cd04740 246 ALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHHcCCCEEEEchh
Confidence 78888899999999744
No 80
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.83 E-value=4.8 Score=42.11 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=72.3
Q ss_pred ChhcHHHHHhccCcCCC--CEEEEcCC-CCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEeCCc
Q 010449 191 TEKDKEDILRWGVPNNI--DMIALSFV-RKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARGD 266 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~--d~I~~sfV-~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~IgrgD 266 (510)
++++.+-+ ...++.|+ |.|.+--. -.-+.+.++-+.+++.-.++.+|++ +-|.+...++.+ .-+|++.+|=|.
T Consensus 95 ~~~~~~~~-~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~ 171 (326)
T PRK05458 95 KDDEYDFV-DQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGP 171 (326)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCC
Confidence 45555555 45577754 99998211 1223333333444444456889997 999988877665 238999887221
Q ss_pred ccC--C---CCchhHHHHHHHHHHHH-HHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 267 LGM--E---IPVEKIFLAQKMMIYKC-NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 267 Lg~--e---~~~~~v~~~qk~ii~~~-~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
=.. + .+. ..+.+|-..+..| +...+|+|....+- + -.|+..|+..|||++|+.+
T Consensus 172 G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGGI~---------~---~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 172 GKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR---------T---HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCCCC---------C---HHHHHHHHHhCCCEEEech
Confidence 111 0 011 1222222222333 33468887644432 2 3588999999999999963
No 81
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=89.73 E-value=8 Score=39.50 Aligned_cols=207 Identities=15% Similarity=0.081 Sum_probs=122.0
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhccCc-CCCCEEEEc-CCCCHHHHHHHHHHhccC---C--CCceEEEEecCHHH
Q 010449 174 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVP-NNIDMIALS-FVRKGSDLVNVRKVLGPH---A--KNIQLMSKVENQEG 246 (510)
Q Consensus 174 s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~-~g~d~I~~s-fV~sa~dv~~vr~~l~~~---~--~~~~IiakIEt~~a 246 (510)
.|-|..-|+.. ++.+++..|.+..++ .|++.|=+. |.-+++|.+.++++.+.. + ....+++.+....+
T Consensus 5 lRDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~ 79 (280)
T cd07945 5 LRDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS 79 (280)
T ss_pred CCCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH
Confidence 34555555553 577778887343234 499999775 558998888777776421 1 14667777766555
Q ss_pred HhchHHHHhh-cCeeEEe--CCcccCC----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC-CCChHhHHHH
Q 010449 247 VVNFDDILRE-TDSFMVA--RGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSP-RPTRAEATDV 318 (510)
Q Consensus 247 v~nldeI~~~-~DgI~Ig--rgDLg~e----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~-~PtraEv~Dv 318 (510)
++. .++. .|.|-+. -.|.-.. ...++.....+++++.|+.+|..+.+.-.. ..+| +-+...+.++
T Consensus 80 ~~~---A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~ 152 (280)
T cd07945 80 VDW---IKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQL 152 (280)
T ss_pred HHH---HHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHH
Confidence 444 3332 4644443 2222111 234566667788899999999887654221 1222 2234555665
Q ss_pred HH-HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcE
Q 010449 319 AN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKL 397 (510)
Q Consensus 319 ~~-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~a 397 (510)
+. +...|+|.|.|. +|.=...|.+.-++++.+...... ....-|+++ ..-+|.+-..+|-..+|+
T Consensus 153 ~~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~~~-~~i~~H~Hn-----------d~Gla~AN~laA~~aGa~- 218 (280)
T cd07945 153 VDFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRYPN-LHFDFHAHN-----------DYDLAVANVLAAVKAGIK- 218 (280)
T ss_pred HHHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhCCC-CeEEEEeCC-----------CCCHHHHHHHHHHHhCCC-
Confidence 55 566799999997 887778899988888887543321 111111110 123555566677788888
Q ss_pred EEEEcCCch
Q 010449 398 IVVLTRGGT 406 (510)
Q Consensus 398 Ivv~T~sG~ 406 (510)
.|=-|-.|-
T Consensus 219 ~vd~s~~Gl 227 (280)
T cd07945 219 GLHTTVNGL 227 (280)
T ss_pred EEEEecccc
Confidence 455555543
No 82
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.61 E-value=6.3 Score=37.47 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=71.6
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEE---EEecCHHHHhchHHHHh-hcCeeEEeCCcccCCCCchh
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLM---SKVENQEGVVNFDDILR-ETDSFMVARGDLGMEIPVEK 275 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Ii---akIEt~~av~nldeI~~-~~DgI~IgrgDLg~e~~~~~ 275 (510)
+.+.+.|+|++.++.-...+.+.++.+++++.| ++++ ..-.|++-+. . +.+ -+|.+.+.++--+...+.+.
T Consensus 71 ~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 71 EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCcccccccCCCC
Confidence 456789999999988766667777777777655 3433 3555655443 2 444 57988886542222221111
Q ss_pred HHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHH
Q 010449 276 IFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 346 (510)
Q Consensus 276 v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~ 346 (510)
.. +.+-+..+....|+.+... . + ..++..+...|+|++.+.+--..-..|.++++
T Consensus 146 ~~---~~i~~~~~~~~~~i~~~GG-I---------~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PE---DDLKKVKKLLGVKVAVAGG-I---------T---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CH---HHHHHHHhhcCCCEEEECC-c---------C---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 11 1221122225677765321 1 1 13567888899999999754433344655554
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.43 E-value=3.7 Score=45.22 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=73.7
Q ss_pred cHHHHHhccCcCCCCEEEEc--CCCCHHHHHHHHHHhccCCCCce-EEEEecCHHHHhchHHHHhhcCeeEEeCCcccCC
Q 010449 194 DKEDILRWGVPNNIDMIALS--FVRKGSDLVNVRKVLGPHAKNIQ-LMSKVENQEGVVNFDDILRETDSFMVARGDLGME 270 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~s--fV~sa~dv~~vr~~l~~~~~~~~-IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e 270 (510)
+.+.+ +..++.|+|.+.+- +-++ +.+.+..+.++....+.. ++.-+-|++...++.+. -+|+|-+|=|--+.+
T Consensus 229 ~~e~a-~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~ 304 (486)
T PRK05567 229 NEERA-EALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSIC 304 (486)
T ss_pred hHHHH-HHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCccc
Confidence 34555 56678899988653 3333 233333344444333444 66888888888776652 479998764332211
Q ss_pred C-------CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 271 I-------PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 271 ~-------~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
. |.+. ..+-.++.++|++.++|+|...- ..+ -.|++.|+..|||++|+.
T Consensus 305 ~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~viadGG---------i~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIADGG---------IRY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCH-HHHHHHHHHHhccCCCeEEEcCC---------CCC---HHHHHHHHHhCCCEEEEC
Confidence 1 1121 22334556677778999886333 222 368899999999999994
No 84
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=89.27 E-value=1.6 Score=42.39 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=74.2
Q ss_pred ccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhc----hHHHHhh-----cCeeEEeCCcccCCC
Q 010449 201 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVN----FDDILRE-----TDSFMVARGDLGMEI 271 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~n----ldeI~~~-----~DgI~IgrgDLg~e~ 271 (510)
.+.+.|+|+|.+..--..+.+..+.+.+++.|..+.+....+++++++. ++.++.. .||..+.+.
T Consensus 75 ~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~------ 148 (215)
T PRK13813 75 AVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPAT------ 148 (215)
T ss_pred HHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCC------
Confidence 3457899999999876566688888888877766666666666655553 3333332 234433221
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHH
Q 010449 272 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 351 (510)
Q Consensus 272 ~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i 351 (510)
..+++..+. +..+.++.+.+.-+ +++-.++..++..|+|.+++..--....-|.++++.|++.
T Consensus 149 ~~~~i~~l~-------~~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~ 211 (215)
T PRK13813 149 RPERVRYIR-------SRLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEE 211 (215)
T ss_pred cchhHHHHH-------HhcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHH
Confidence 112222221 12233321111111 1111125677778999998875443345699999998876
Q ss_pred HHH
Q 010449 352 CIE 354 (510)
Q Consensus 352 ~~~ 354 (510)
+++
T Consensus 212 ~~~ 214 (215)
T PRK13813 212 IRG 214 (215)
T ss_pred Hhc
Confidence 654
No 85
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=89.21 E-value=12 Score=36.76 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=78.4
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEe-----------cCHHHHhchHHHHhh
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV-----------ENQEGVVNFDDILRE 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakI-----------Et~~av~nldeI~~~ 256 (510)
|..+..|.+.+.+.+.+.|+|.++++ +-.+...+..+. + ++.++.++ .+..-+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 45577787777688899999999998 334444443331 1 22233222 112222345555554
Q ss_pred -cCee--EEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC----CChHhHHH-HHHHHHcCCce
Q 010449 257 -TDSF--MVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR----PTRAEATD-VANAVLDGTDC 328 (510)
Q Consensus 257 -~DgI--~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~----PtraEv~D-v~~av~~G~D~ 328 (510)
+|++ .+-.+++. ..++...-+++.+.|+++|.|+|+-+.. .... -+..++.. ...+...|+|.
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~-----~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYP-----RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 6877 55445442 4566777789999999999999872211 0000 12345554 45578899999
Q ss_pred EEecc
Q 010449 329 VMLSG 333 (510)
Q Consensus 329 imLs~ 333 (510)
+-.+.
T Consensus 160 Ik~~~ 164 (235)
T cd00958 160 VKTKY 164 (235)
T ss_pred EEecC
Confidence 99863
No 86
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=89.20 E-value=0.65 Score=50.73 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHhc----------------c----CC-CCceEEEEecCHHHHhchHHHHhh----c--
Q 010449 205 NNIDMIALSFVRKGSDLVNVRKVLG----------------P----HA-KNIQLMSKVENQEGVVNFDDILRE----T-- 257 (510)
Q Consensus 205 ~g~d~I~~sfV~sa~dv~~vr~~l~----------------~----~~-~~~~IiakIEt~~av~nldeI~~~----~-- 257 (510)
..+-.|++||++|++++..+.+++. + .. +.+.+|..||...++-|+++|+.. .
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4677899999999999999866542 1 11 478999999999999999999985 1
Q ss_pred C----eeEEeCCcccCCCCch----hHHHHHHHHHHHHHHcCCCe
Q 010449 258 D----SFMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPV 294 (510)
Q Consensus 258 D----gI~IgrgDLg~e~~~~----~v~~~qk~ii~~~~~~gkpv 294 (510)
+ -+|+||.|=++..|+- .+..+-.++-+...+.|.|+
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~I 243 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPI 243 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 2 7999999999999973 33344456666668889987
No 87
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=89.13 E-value=4.9 Score=42.17 Aligned_cols=119 Identities=21% Similarity=0.275 Sum_probs=84.2
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhc----------------cCCCCceEEEEecCHHHHhchHHHHh
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG----------------PHAKNIQLMSKVENQEGVVNFDDILR 255 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~----------------~~~~~~~IiakIEt~~av~nldeI~~ 255 (510)
+.+++.+ ..|++.|+|+|.++- +++..++++-+ ..+.....+.+|.+++..+.+.+.++
T Consensus 13 ~~~k~~v-t~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~ 87 (344)
T PRK02290 13 EERKEVV-TTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAK 87 (344)
T ss_pred hhHHHHH-HHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhc
Confidence 6677777 889999999998864 66666655321 22346778889999999999999998
Q ss_pred hcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCC
Q 010449 256 ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 335 (510)
Q Consensus 256 ~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Et 335 (510)
..|.+++--.|- --+|+|. +|++..+..+ ++.. .-+-.|+.-...+...|+|+++|..+.
T Consensus 88 ~~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d 147 (344)
T PRK02290 88 EVDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD 147 (344)
T ss_pred cCCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC
Confidence 889888865554 2356655 4444422333 3321 345577777789999999999998774
No 88
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=88.95 E-value=13 Score=41.08 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=102.3
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEec-CHHHHhchHHHHhh--cCe--eEE
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVE-NQEGVVNFDDILRE--TDS--FMV 262 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIE-t~~av~nldeI~~~--~Dg--I~I 262 (510)
.++..++..|.+...+.|+|.|=+.| +.+..|.+.++.+.. ...+..+.+..- ..+.++..-+-+.- .+. +++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~ 97 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFI 97 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEE
Confidence 36888888886777789999997755 566888888877653 334566666654 24444322222211 232 333
Q ss_pred eCCcccCC----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCCC
Q 010449 263 ARGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAA 337 (510)
Q Consensus 263 grgDLg~e----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~ 337 (510)
+-.|+-.+ ...+++.....+.++.|+++|.-+.+..+ ...+-+...+.+++. +...|+|.+.|. +|.=
T Consensus 98 ~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DTvG 170 (494)
T TIGR00973 98 ATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAINAGATTINIP-DTVG 170 (494)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHHcCCCEEEeC-CCCC
Confidence 33343322 23456677778899999999988766422 222223344555555 456799999997 8988
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 010449 338 GAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~a 355 (510)
+..|.+.-+.+..+.+..
T Consensus 171 ~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 171 YALPAEYGNLIKGLRENV 188 (494)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 899999988888877544
No 89
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.71 E-value=5.7 Score=38.66 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=64.4
Q ss_pred HHHHhccCcCCCCEEEEc--CCCCH--HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCC
Q 010449 196 EDILRWGVPNNIDMIALS--FVRKG--SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGME 270 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~s--fV~sa--~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e 270 (510)
+.+ +.+.+.|+|+|.+- ...++ +++.++.+.+++. ..+.+++-.-|.+-+ ....+. +|.+.+..+++...
T Consensus 79 ~~v-~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 79 KEV-DALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGYTEE 153 (221)
T ss_pred HHH-HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCceeecC
Confidence 345 56688899977653 32233 6666666666653 466777765544322 222222 58877754443221
Q ss_pred C--CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 271 I--PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 271 ~--~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
- ....-...-+++. ...++|++.+.. .-|. .|+..+...|+|++++...
T Consensus 154 ~~~~~~~~~~~i~~i~---~~~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 154 TKKPEEPDFALLKELL---KAVGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGGA 204 (221)
T ss_pred CCCCCCcCHHHHHHHH---HhCCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEchH
Confidence 1 1111112222222 223799987543 2222 4556777889999999843
No 90
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.70 E-value=4.6 Score=41.46 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=75.3
Q ss_pred hcHHHHHhccCcCCCCEEEEcC----C-----------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-
Q 010449 193 KDKEDILRWGVPNNIDMIALSF----V-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE- 256 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sf----V-----------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 256 (510)
.|..+..+.+.+.|+|+|-+.+ . ++++.+.++-+.+++. .++.+++||-- .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~--~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTP--NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCC--CchhHHHHHHHH
Confidence 4444443444556888877632 2 4455666665555432 35789999942 34466666663
Q ss_pred ----cCeeEEe-----CCccc---------C--------CCCchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCC
Q 010449 257 ----TDSFMVA-----RGDLG---------M--------EIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSP 308 (510)
Q Consensus 257 ----~DgI~Ig-----rgDLg---------~--------e~~~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~ 308 (510)
+|||.+. |-++- + =-|....|...+.+-+..+.. ..|+|...-+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------- 262 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------- 262 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-------
Confidence 5888742 11110 0 011123455566666666666 68888765543
Q ss_pred CCChHhHHHHHHHHHcCCceEEeccC
Q 010449 309 RPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 309 ~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
-..|+..++..|||++|+..-
T Consensus 263 -----~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 263 -----SWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred -----CHHHHHHHHHcCCChheEcee
Confidence 356888899999999999744
No 91
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.33 E-value=4.5 Score=43.55 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred hcHHHHHhccCcCCCCEEEEcCC---------------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-
Q 010449 193 KDKEDILRWGVPNNIDMIALSFV---------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE- 256 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV---------------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~- 256 (510)
.+..+..+...+.|+|+|-+.+- ++++.+.++-+.+++. .++.|++||= + .+.++.+|++.
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHH
Confidence 34444434445567888776422 3455555555555443 3689999993 3 35567777663
Q ss_pred ----cCeeEE-----eCCc-----------ccC--C----CCchhHHHHHHHHHHHHHHc---CCCeEEehhhhHhhhcC
Q 010449 257 ----TDSFMV-----ARGD-----------LGM--E----IPVEKIFLAQKMMIYKCNLV---GKPVVTATQMLESMIKS 307 (510)
Q Consensus 257 ----~DgI~I-----grgD-----------Lg~--e----~~~~~v~~~qk~ii~~~~~~---gkpvivaTqmLeSM~~~ 307 (510)
+|||.+ +|-. |+. . -|....|...+.|-...++. ..|+|-..-+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------ 263 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------ 263 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC------
Confidence 588883 2211 100 1 12234555666666666655 57887655443
Q ss_pred CCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc
Q 010449 308 PRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 358 (510)
Q Consensus 308 ~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 358 (510)
...|+..+++.|||+||+..-.-. +-| ..+.+|.++.+.+
T Consensus 264 ------s~~da~e~i~aGA~~Vqi~ta~~~-~gp----~ii~~I~~~L~~~ 303 (420)
T PRK08318 264 ------TWRDAAEFILLGAGTVQVCTAAMQ-YGF----RIVEDMISGLSHY 303 (420)
T ss_pred ------CHHHHHHHHHhCCChheeeeeecc-CCc----hhHHHHHHHHHHH
Confidence 356888889999999999743321 123 3344555555543
No 92
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.18 E-value=6.9 Score=37.33 Aligned_cols=130 Identities=5% Similarity=0.025 Sum_probs=74.7
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCc---ccCCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD---LGMEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgD---Lg~e~~~~~v 276 (510)
+.+.+.|+|+|.++--.+ ++.....+.++..+..+.+ -++.....+.+.++...+|++.+..-+ -|-..+...+
T Consensus 73 ~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 73 EDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred HHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 455689999999876444 4455555556555544433 344444577788888778998886433 2222222222
Q ss_pred HHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHH
Q 010449 277 FLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 346 (510)
Q Consensus 277 ~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~ 346 (510)
..-+++.+..++. ++|+.++.-+ + ..++..++..|+|++.+++.-..-.-|.++++
T Consensus 150 -~~i~~i~~~~~~~~~~~~i~v~GGI----------~---~env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 150 -EKIREVRKMIDENGLSILIEVDGGV----------N---DDNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred -HHHHHHHHHHHhcCCCceEEEECCc----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 2223333334433 3577664321 1 14467778899999999865543345666654
No 93
>PLN02591 tryptophan synthase
Probab=88.14 E-value=7.2 Score=39.27 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=74.3
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEE--eCCcccCCCCchhHH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV--ARGDLGMEIPVEKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~I--grgDLg~e~~~~~v~ 277 (510)
+.+.+.|+|++++|=.- .|+..++++.+++.| +..|..+=--..-+.+..|++.++|.+= ++ .|+.=.-..++
T Consensus 100 ~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~ 174 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASVS 174 (250)
T ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCc
Confidence 66788999999999763 577888888887654 4455555111224578999999876652 32 22221112344
Q ss_pred HHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 278 LAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 278 ~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-.+..++.+++ .++|+++-.- .=|++ |+..+...|+||+...
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFG---------ISKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCC---------CCCHH---HHHHHHhcCCCEEEEC
Confidence 555666677776 4899877432 33333 5566777899999986
No 94
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.12 E-value=6.8 Score=39.66 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=72.8
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCC-----------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE---- 256 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV-----------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~---- 256 (510)
..|..+..+.+.+.|+|+|-+.+- ++++.+.++-+.+++. -+..+++|+-.-...++..++++.
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 344444436677789999887542 2445555554444432 257899998765444445555543
Q ss_pred -cCeeEEeCCcccC--C------------CC---chhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHH
Q 010449 257 -TDSFMVARGDLGM--E------------IP---VEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEAT 316 (510)
Q Consensus 257 -~DgI~IgrgDLg~--e------------~~---~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~ 316 (510)
+|+|.+.-+-.+. + -+ ....+...+.+-..++.. +.|+|....+- | ..
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~---------~---~~ 256 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID---------S---GE 256 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC---------C---HH
Confidence 5888875221110 0 01 111223334444444445 68888755433 2 35
Q ss_pred HHHHHHHcCCceEEec
Q 010449 317 DVANAVLDGTDCVMLS 332 (510)
Q Consensus 317 Dv~~av~~G~D~imLs 332 (510)
|+..++..|+|++|+.
T Consensus 257 da~~~l~~GAd~V~vg 272 (289)
T cd02810 257 DVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHcCccHheEc
Confidence 6778888999999997
No 95
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=88.07 E-value=19 Score=36.37 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH----------hchHHHHhh-
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV----------VNFDDILRE- 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av----------~nldeI~~~- 256 (510)
|..+..|.+.+.+.+++.|++.|+++. --+...+..+ +.++.++.+|++.-.+ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 344666777666888999999999983 3333333333 2356688888843333 124444443
Q ss_pred cCeeEEe--CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 257 TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 257 ~DgI~Ig--rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
+|++-+- -|++ ....+...-+++.+.|+++|.|+++
T Consensus 107 ad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 107 ADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 5655443 1221 1345666778899999999999877
No 96
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=88.04 E-value=6.4 Score=39.92 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=75.1
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe---CCcccCCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig---rgDLg~e~~~~~v 276 (510)
+.+.+.|+|+|.+|-.- .++..++.+.+++.|-+.-.+..=.| -.+.+..|++.++|.+-. +|==|.. ..+
T Consensus 113 ~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~---~~~ 186 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLK---TEL 186 (263)
T ss_pred HHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCC---ccc
Confidence 56788999999999874 58888888888887644444444444 466899999999966543 2322222 244
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 277 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 277 ~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+.-.+..++..+++ ++|+.+= -..=+++ ++......|+|++...
T Consensus 187 ~~~~~~~i~~ir~~t~~Pi~vG---------FGI~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 187 DKKLKKLIETIKKMTNKPIILG---------FGISTSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred cHHHHHHHHHHHHhcCCCEEEE---------CCcCCHH---HHHHHHhcCCCEEEEC
Confidence 44455666666654 7887652 2233333 4555666799999985
No 97
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.97 E-value=3.4 Score=40.84 Aligned_cols=136 Identities=8% Similarity=-0.018 Sum_probs=80.4
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHH--hhcCeeEEeCCcccCCCCchhHH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL--RETDSFMVARGDLGMEIPVEKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~--~~~DgI~IgrgDLg~e~~~~~v~ 277 (510)
+...+.|+|+|.+-.--+.+.+.+..+.+++.|..+.+-..-+| .++.+.+++ ...|.|++ ++++-|.....
T Consensus 82 ~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~~gq~ 155 (228)
T PTZ00170 82 DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGFGGQS 155 (228)
T ss_pred HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCCCCcE
Confidence 44578899999885554433377777778777765554444444 688899998 66788875 55665542211
Q ss_pred ---HHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 278 ---LAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 278 ---~~qk~ii~~~~~~g-kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
..-.++-+.....+ ..+.++.- =+. ..+..++..|+|.+++..--.....|.++++.+++.++
T Consensus 156 ~~~~~~~ki~~~~~~~~~~~I~VdGG----------I~~---~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 156 FMHDMMPKVRELRKRYPHLNIQVDGG----------INL---ETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred ecHHHHHHHHHHHHhcccCeEEECCC----------CCH---HHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 11222222222222 22222211 111 24467788899999986444334579999888887654
Q ss_pred H
Q 010449 354 E 354 (510)
Q Consensus 354 ~ 354 (510)
+
T Consensus 223 ~ 223 (228)
T PTZ00170 223 K 223 (228)
T ss_pred H
Confidence 4
No 98
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=87.97 E-value=6.3 Score=36.22 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred hccCcCCCCEEEEcCCC------CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCC
Q 010449 200 RWGVPNNIDMIALSFVR------KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIP 272 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~------sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~ 272 (510)
+++.+.|+|+|.++.-. ..+.++++++.+ .+..++.++.......... +.+. .|.+.+..+.-+....
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 46678899999999877 344555555544 3578888886654433211 2222 6999988765543322
Q ss_pred chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 273 VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 273 ~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
... +.....+....+..++|++.+.-+- + -.++..++..|+|+++++
T Consensus 153 ~~~-~~~~~~~~~~~~~~~~pi~~~GGi~---------~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 153 DAV-PIADLLLILAKRGSKVPVIAGGGIN---------D---PEDAAEALALGADGVIVG 199 (200)
T ss_pred cCc-hhHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 111 1111222233455789998866532 1 245567777899999975
No 99
>PRK09389 (R)-citramalate synthase; Provisional
Probab=87.77 E-value=23 Score=39.19 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=103.3
Q ss_pred CChhcHHHHHhccCcCCCCEEEEc-CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCe--eEEeCC
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDS--FMVARG 265 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~s-fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~Dg--I~Igrg 265 (510)
++..++..|.+...+.|+|.|=+. ++.+..|.+.++.+... +.+..|.+..-.. .+.++..++. .|. ++++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~-~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE-GLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc-CCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 577777777677788999998764 45788888888776643 4467777777552 2334444443 454 344444
Q ss_pred cccC----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCCCCCCC
Q 010449 266 DLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGESAAGAY 340 (510)
Q Consensus 266 DLg~----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Eta~G~y 340 (510)
|+-. ....++....-...++.|+++|..+.+. +....+-+..-+.+++.+ ...|+|.+.|. +|.=...
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIEAGADRICFC-DTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcC
Confidence 4421 1233455566677888999999887663 234555566667777764 45699999996 8888889
Q ss_pred HHHHHHHHHHHHH
Q 010449 341 PEIAVKIMRRICI 353 (510)
Q Consensus 341 P~~~V~~m~~i~~ 353 (510)
|.+.-+.++.+.+
T Consensus 171 P~~~~~lv~~l~~ 183 (488)
T PRK09389 171 PEKTYELFKRLSE 183 (488)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888777654
No 100
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.67 E-value=33 Score=34.64 Aligned_cols=204 Identities=14% Similarity=0.068 Sum_probs=113.5
Q ss_pred cCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhch
Q 010449 173 GERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNF 250 (510)
Q Consensus 173 ~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nl 250 (510)
+.|-|...|+.. +|..++..|.+...+.|+|.|=+.+ .-++++...++.+. ..+....+.+. .-+.++++..
T Consensus 7 TLRDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~-~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 7 TLREGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIA-KLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred CCCCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHH-hCCCCCcEEEEecCCHHHHHHH
Confidence 345566666653 4666666665777889999987733 33444444444443 33433444443 3333443333
Q ss_pred HHHHhhcCeeEE--eCCccc----CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-
Q 010449 251 DDILRETDSFMV--ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL- 323 (510)
Q Consensus 251 deI~~~~DgI~I--grgDLg----~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~- 323 (510)
.+- -.|.|-+ +-.|.- .-...++.....+++++.++.+|..+.+.-. + .-+-+...+.+++..+.
T Consensus 81 ~~~--g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--d----a~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 81 VET--GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--D----SFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHc--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--e----eCCCCHHHHHHHHHHHHH
Confidence 220 1464443 222210 1123456667778899999999988765321 1 11222555666666544
Q ss_pred cCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcC
Q 010449 324 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTR 403 (510)
Q Consensus 324 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~ 403 (510)
.|+|.+.|. +|.=..+|.+.-++++.+-+..- ....-|+++ ..-++.+-...|-..+++ +|=.|-
T Consensus 153 ~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn-----------~~Gla~an~~~a~~aG~~-~vd~s~ 217 (262)
T cd07948 153 LGVNRVGIA-DTVGIATPRQVYELVRTLRGVVS--CDIEFHGHN-----------DTGCAIANAYAALEAGAT-HIDTTV 217 (262)
T ss_pred cCCCEEEEC-CcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC-----------CCChHHHHHHHHHHhCCC-EEEEec
Confidence 499999886 88878899998888877644321 111111110 123445555566677888 455554
Q ss_pred Cc
Q 010449 404 GG 405 (510)
Q Consensus 404 sG 405 (510)
.|
T Consensus 218 ~G 219 (262)
T cd07948 218 LG 219 (262)
T ss_pred cc
Confidence 44
No 101
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.56 E-value=14 Score=35.55 Aligned_cols=136 Identities=9% Similarity=0.083 Sum_probs=74.9
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCC-c-hhHH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIP-V-EKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~-~-~~v~ 277 (510)
+.+.+.|+|+|.++.-.+. +.....+.++..+ ..+..-+......+.+.++...+|.+.++.-+-|..-. + +...
T Consensus 78 ~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 154 (220)
T PRK05581 78 PDFAKAGADIITFHVEASE-HIHRLLQLIKSAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVL 154 (220)
T ss_pred HHHHHcCCCEEEEeeccch-hHHHHHHHHHHcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHH
Confidence 4456889999999887664 3334444444443 44444453223466678888888988776433322211 1 1222
Q ss_pred HHHHHHHHHHHHcCCC--eEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHH
Q 010449 278 LAQKMMIYKCNLVGKP--VVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 351 (510)
Q Consensus 278 ~~qk~ii~~~~~~gkp--vivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i 351 (510)
...+++...+..++.| +.++.-+ .| .++..+...|+|++...+.-..=..|.++++.++++
T Consensus 155 ~~i~~~~~~~~~~~~~~~i~v~GGI--------~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 155 EKIRELRKLIDERGLDILIEVDGGI--------NA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCC--------CH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 2223333333333333 3343221 12 244555668999999976655445788888776654
No 102
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.55 E-value=8 Score=42.60 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=78.7
Q ss_pred CChhcHHHHHhccCcCCCCEEEE--cCCCCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEe---
Q 010449 190 LTEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVA--- 263 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~Ig--- 263 (510)
+.+.+.+-+ +..++.|+|.|++ ++-++ +.+.++-+.+++...++.+|+= +-|.++..+|.+. -+|+|=||
T Consensus 222 ~~~~~~~ra-~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~ 297 (475)
T TIGR01303 222 INGDVGGKA-KALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGP 297 (475)
T ss_pred eCccHHHHH-HHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcC
Confidence 355555666 6678899998875 44334 3444444445544457888887 8888887776652 37888765
Q ss_pred ------CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 264 ------RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 264 ------rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
|+-.++-.| -..+--...++++++|+|+|--.. ..+ -.|++.|+..|||++|+.
T Consensus 298 Gs~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadGg---------i~~---~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 298 GAMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADGG---------VRH---PRDVALALAAGASNVMVG 357 (475)
T ss_pred CccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEeec
Confidence 222222221 122334566667888999875322 222 279999999999999995
No 103
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.52 E-value=7.6 Score=42.06 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCCcEEecCCCEEEEEecCCCC-CCccEEecCCCCccccCCCCCEE
Q 010449 63 ETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFK-GNEEMITMSYKKLPVDVKPGNTI 141 (510)
Q Consensus 63 ~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~-~~~~~i~v~~~~~~~~v~~gd~i 141 (510)
++...|+...+..-..+.|-..+.+-+.+ .+-.++|+...... -+...+.-++..+-..++.|++|
T Consensus 10 el~~~ik~~le~~~~~v~v~gEis~~~~~-------------~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v 76 (438)
T PRK00286 10 ELNRYVKSLLERDLGQVWVRGEISNFTRH-------------SSGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKV 76 (438)
T ss_pred HHHHHHHHHHHhhCCcEEEEEEeCCCeeC-------------CCCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEE
Confidence 45556666655432345555544433332 22245566543211 11111222345555668999998
Q ss_pred EEe--------CCeEEEEEEEEeCCCCeEEEEEeeCeEe----------cCCCCcccCCccccCCCCChhcHHHHHhccC
Q 010449 142 LCA--------DGTITLTVLSCDPKSGTVRCRCENTAML----------GERKNVNLPGVVVDLPTLTEKDKEDILRWGV 203 (510)
Q Consensus 142 ~id--------DG~i~l~V~~~~~~~~~i~~~v~~~G~l----------~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~ 203 (510)
.+. .|.++|.|.++++.+. |.| ...+|.-=|+...++|.++.+
T Consensus 77 ~v~g~~~~y~~~g~~ql~v~~i~~~g~---------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~---------- 137 (438)
T PRK00286 77 LVRGKVSLYEPRGDYQLIVEEIEPAGI---------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKR---------- 137 (438)
T ss_pred EEEEEEEEECCCCCEEEEEEEeeeCCc---------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCE----------
Confidence 766 6888998888865430 222 112344334444556654322
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--------cCeeEEeCCcccCCCCchh
Q 010449 204 PNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--------TDSFMVARGDLGMEIPVEK 275 (510)
Q Consensus 204 ~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--------~DgI~IgrgDLg~e~~~~~ 275 (510)
|++=--.+++-++.+.+.+..+.....+.--==+.+|-....+|+++ .|.|+|+||-=+. ++
T Consensus 138 ------I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~----eD 207 (438)
T PRK00286 138 ------IGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL----ED 207 (438)
T ss_pred ------EEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH----HH
Confidence 22222267777777777777665433322211222333333444332 3999999984322 12
Q ss_pred -HHHHHHHHHHHHHHcCCCeEEe
Q 010449 276 -IFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 276 -v~~~qk~ii~~~~~~gkpviva 297 (510)
++.=...++++..+...|||.|
T Consensus 208 L~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 208 LWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred hhccCcHHHHHHHHcCCCCEEEe
Confidence 2223456777788889999987
No 104
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.44 E-value=6.3 Score=42.27 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=82.8
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhhcCeeEEeC-Cccc-CCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRETDSFMVAR-GDLG-MEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~~DgI~Igr-gDLg-~e~~~~~v 276 (510)
+.+.++|+|++.+...-+.+.+.++.+.+++.|. .+.. .+.....++.++++....|.+.+.+ -|=+ ..-++.
T Consensus 244 ~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gi--kvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~-- 319 (391)
T PRK13307 244 RMAADATADAVVISGLAPISTIEKAIHEAQKTGI--YSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWG-- 319 (391)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCC--EEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHH--
Confidence 4567899999999987777788888888887763 3333 4444445566777766679888876 2222 211222
Q ss_pred HHHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHH
Q 010449 277 FLAQKMMIYKCNL--VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 352 (510)
Q Consensus 277 ~~~qk~ii~~~~~--~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~ 352 (510)
++ +..++ .+.++.++.-+ + ..++..++..|+|.+.+..--..-+.|.++++.+.+.+
T Consensus 320 -----kI-~~ikk~~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 320 -----NI-KEIKKAGGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred -----HH-HHHHHhCCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 22 22333 24566665321 1 23467778899999988654333457999988887765
No 105
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.33 E-value=8 Score=37.10 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=75.5
Q ss_pred ccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh-hcCeeEEeCCcccCCC---CchhH
Q 010449 201 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLGMEI---PVEKI 276 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~DgI~IgrgDLg~e~---~~~~v 276 (510)
.+.+.|+|++.++.- ...+..+|+.+. +..|-+.+.|.+-+ .+..+ -+|.+++|+-.-+..- +...+
T Consensus 68 la~~~~~~gvHl~~~--~~~~~~~r~~~~----~~~ig~s~~s~e~a---~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~ 138 (201)
T PRK07695 68 IALLLNIHRVQLGYR--SFSVRSVREKFP----YLHVGYSVHSLEEA---IQAEKNGADYVVYGHVFPTDCKKGVPARGL 138 (201)
T ss_pred HHHHcCCCEEEeCcc--cCCHHHHHHhCC----CCEEEEeCCCHHHH---HHHHHcCCCEEEECCCCCCCCCCCCCCCCH
Confidence 356779999999863 223556666442 34566655554432 22222 2699998864332211 11111
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 277 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 277 ~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
+.+-+.+...++|++.+..+ +. .++..+...|+|++.+++.-.....|.++++.+.++..
T Consensus 139 ----~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 139 ----EELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred ----HHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 12222233457998875442 22 34566677999999998777666789999998887653
No 106
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=87.29 E-value=2.8 Score=44.10 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=86.6
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHH----------------------hccCCCCceEEEEecCHHHHhchHH
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKV----------------------LGPHAKNIQLMSKVENQEGVVNFDD 252 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~----------------------l~~~~~~~~IiakIEt~~av~nlde 252 (510)
++.+ ..|++.|+|.|+++- .+++.++++-+. +...+++......|.+++.++.+-+
T Consensus 15 k~~v-t~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~ 92 (354)
T PF01959_consen 15 KEVV-TAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACE 92 (354)
T ss_pred HHHH-HHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHH
Confidence 5566 789999999999884 223333332111 1112345557899999999999999
Q ss_pred HHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 253 ILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 253 I~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.+...|.+++--.|-. -+|+|.+ +++....+.-++.. .-+-+|+.=...+.+.|+|+++|.
T Consensus 93 ~~~~~~~~iv~~~Dw~-iIPlEnl-------iA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVll~ 153 (354)
T PF01959_consen 93 LAKRADYVIVEFRDWT-IIPLENL-------IAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVLLD 153 (354)
T ss_pred HhccCCeEEEEcCCCc-EecHHHH-------HHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEEEC
Confidence 9988888888766654 3566653 33333333333332 456677777899999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH
Q 010449 333 GESAAGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 333 ~Eta~G~yP~~~V~~m~~i~~~ 354 (510)
.+. |. .++.+...+.+
T Consensus 154 ~~d-----~~-ei~~~~~~~~~ 169 (354)
T PF01959_consen 154 PDD-----PA-EIKALVALLKE 169 (354)
T ss_pred CCC-----HH-HHHHHHHHHhh
Confidence 774 33 34444454554
No 107
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.25 E-value=19 Score=36.91 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEc-CCCC------HHHHHHHHHHhccCCCCceEEEEecCHHHH
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRK------GSDLVNVRKVLGPHAKNIQLMSKVENQEGV 247 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~s-fV~s------a~dv~~vr~~l~~~~~~~~IiakIEt~~av 247 (510)
|-|..-|+. .++..++..|.+...+.|++.|=+. |+.. ++.-+.++. +... .+..+.+..-+.+++
T Consensus 13 RDG~Q~~~~-----~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~-l~~~-~~~~~~~l~~~~~~i 85 (287)
T PRK05692 13 RDGLQNEKR-----FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAG-IQRR-PGVTYAALTPNLKGL 85 (287)
T ss_pred CccccCcCC-----CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHh-hhcc-CCCeEEEEecCHHHH
Confidence 444444544 3577777777677788999998663 4432 222222333 3221 234555544455555
Q ss_pred hchHHHHhh-cCee--EEeCCcc----cCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC---ChHhHHH
Q 010449 248 VNFDDILRE-TDSF--MVARGDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRP---TRAEATD 317 (510)
Q Consensus 248 ~nldeI~~~-~DgI--~IgrgDL----g~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~P---traEv~D 317 (510)
+.. ++. .|.+ +++-.|+ -.....++.....+.+++.++++|..+..+=.+ ...+|.- +.+.+.+
T Consensus 86 e~A---~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 86 EAA---LAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVAD 159 (287)
T ss_pred HHH---HHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHH
Confidence 433 222 4543 3333332 112334556666788999999999987421000 0112222 3344555
Q ss_pred HHH-HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCc
Q 010449 318 VAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAK 396 (510)
Q Consensus 318 v~~-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~ 396 (510)
++. +...|+|.|.|. +|.=-..|.++-+.++.+.++.-. ....-|+++ + ..+|.+-..+|...|++
T Consensus 160 ~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn---------~--~Gla~AN~laA~~aG~~ 226 (287)
T PRK05692 160 VAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEFPA-ERLAGHFHD---------T--YGQALANIYASLEEGIT 226 (287)
T ss_pred HHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhCCC-CeEEEEecC---------C--CCcHHHHHHHHHHhCCC
Confidence 444 667899999997 777777899999998887654311 001111110 1 12444445667788888
Q ss_pred EEEEEcCCc
Q 010449 397 LIVVLTRGG 405 (510)
Q Consensus 397 aIvv~T~sG 405 (510)
.|=-|-.|
T Consensus 227 -~id~s~~G 234 (287)
T PRK05692 227 -VFDASVGG 234 (287)
T ss_pred -EEEEEccc
Confidence 34444443
No 108
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.25 E-value=10 Score=40.13 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 219 SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 219 ~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
+.++.+++...+ ..+.+++-+-+.+.++-+.+ .+|.+-||.+++.- -.+++++.+.||||++.|
T Consensus 152 ~gl~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 152 SALELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHHHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeC
Confidence 334444444444 35888898888887766655 47999999766532 344777888999999977
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEeccC---CCCCCCHHHHH
Q 010449 299 QMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGE---SAAGAYPEIAV 345 (510)
Q Consensus 299 qmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imLs~E---ta~G~yP~~~V 345 (510)
.|. +|-.|+...+..+.. |.+-++|..- |....||...+
T Consensus 216 G~~--------~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~ 258 (352)
T PRK13396 216 GMA--------ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTL 258 (352)
T ss_pred CCC--------CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCc
Confidence 654 677888888887764 7777887643 33346784433
No 109
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=87.19 E-value=12 Score=41.87 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=110.2
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEecC-HHHH-----
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGV----- 247 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIEt-~~av----- 247 (510)
|-|-.-|+. .++..++..|.+...+.|+|.|=+-| .-|+.|...++.+.+..-++..|.+..=+ ...+
T Consensus 10 RDG~Q~~g~-----~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGV-----SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 344444554 35788888886777889999997753 34688888888876432235666666522 2222
Q ss_pred hchHHHHhh-cCee--EEeCCcccCC----CCchhHHHHHHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChHhHHHHH
Q 010449 248 VNFDDILRE-TDSF--MVARGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVA 319 (510)
Q Consensus 248 ~nldeI~~~-~DgI--~IgrgDLg~e----~~~~~v~~~qk~ii~~~~~~gkpvi-vaTqmLeSM~~~~~PtraEv~Dv~ 319 (510)
..++..... .+.| ++.-.|+-.+ ...+++...-...++.++.+|..|. .+++..+.. +-+...+.++.
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 123444433 3433 3333343222 2346777777888999999999874 455443322 22445566666
Q ss_pred HH-HHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHh
Q 010449 320 NA-VLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 356 (510)
Q Consensus 320 ~a-v~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 356 (510)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+++...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 64 55699999998 89888999999999999876543
No 110
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=87.08 E-value=15 Score=38.98 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=97.8
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCH-HHHHHHHHHhccCCCCceEEEEe-cCHHHHhchHHHHhh-cCeeE--Ee
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKG-SDLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE-TDSFM--VA 263 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa-~dv~~vr~~l~~~~~~~~IiakI-Et~~av~nldeI~~~-~DgI~--Ig 263 (510)
.++..++..|.+...+.|++.|=+.|-... .+.+.++.+. +.+.+..+.+-. -+.+.+ +..++. .|.|. ++
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~di---~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDADI---EAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHHHH---HHHHcCCcCEEEEEEc
Confidence 367778888767778899999977554433 3445555443 333445666655 333333 333332 35443 33
Q ss_pred CCcccCC----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCCCC
Q 010449 264 RGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAAG 338 (510)
Q Consensus 264 rgDLg~e----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~G 338 (510)
-.|+-.+ ...++.....++.++.++++|..+-+. ....++-+...+.+++. +...|+|.|.|. +|.=.
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~ 167 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG------GEDASRADPDFLVELAEVAAEAGADRFRFA-DTVGI 167 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe------ecCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCC
Confidence 3332111 123455555567889999999887653 22445556666666666 455799999987 88888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 010449 339 AYPEIAVKIMRRICIEA 355 (510)
Q Consensus 339 ~yP~~~V~~m~~i~~~a 355 (510)
..|.+.-+.++.+....
T Consensus 168 ~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 168 LDPFSTYELVRALRQAV 184 (365)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 89999999998887654
No 111
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=87.01 E-value=1.6 Score=50.18 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=71.7
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCC------CceEEEEecCHHHHhchHHHHhh-----------cC-----eeEEeCCcc
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAK------NIQLMSKVENQEGVVNFDDILRE-----------TD-----SFMVARGDL 267 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~------~~~IiakIEt~~av~nldeI~~~-----------~D-----gI~IgrgDL 267 (510)
.++|+++++.||.++-=++++.|- .+.|+..-||.+.++|..+|+.. .+ -||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 567999999999999999998873 48899999999999999999874 11 588887776
Q ss_pred cCCCCc----hhHHHHHHHHHHHHHHcCCCe
Q 010449 268 GMEIPV----EKIFLAQKMMIYKCNLVGKPV 294 (510)
Q Consensus 268 g~e~~~----~~v~~~qk~ii~~~~~~gkpv 294 (510)
.-+=|+ -.+..+|+.+++.|+++|+-.
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 666665 378899999999999999875
No 112
>PRK08227 autoinducer 2 aldolase; Validated
Probab=86.62 E-value=8.8 Score=38.99 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=84.7
Q ss_pred hHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceE
Q 010449 250 FDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 329 (510)
Q Consensus 250 ldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~i 329 (510)
+..++..+|+++.-+|=+....+ ...++|.|+-..-=.++. .+.+...-+++|-.|+..|+|++
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEE
Confidence 55555557999887554422111 224577776422111111 12244556688999999999999
Q ss_pred EeccCCCCCCCHHHHHHHHHHHHHHHhcc-c----chHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC
Q 010449 330 MLSGESAAGAYPEIAVKIMRRICIEAESS-L----DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRG 404 (510)
Q Consensus 330 mLs~Eta~G~yP~~~V~~m~~i~~~aE~~-~----~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~s 404 (510)
..+-=-- +.+--+.++.+.+++++++++ + +|. ..+...+..+ +...|+++|-+++|+. |=...+
T Consensus 112 ~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Plla~~p--------rG~~~~~~~~-~ia~aaRiaaELGADi-VK~~y~ 180 (264)
T PRK08227 112 AAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPVMAVTA--------VGKDMVRDAR-YFSLATRIAAEMGAQI-IKTYYV 180 (264)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEec--------CCCCcCchHH-HHHHHHHHHHHHcCCE-EecCCC
Confidence 8852211 334467888888888998875 1 221 0111123344 6667889999999994 444445
Q ss_pred chH-HHHHHhhCCCCcEEEE
Q 010449 405 GTT-AKLVAKYRPAVPILSV 423 (510)
Q Consensus 405 G~t-A~~iSr~RP~~PIiav 423 (510)
|.+ ++.++.. ++||+.-
T Consensus 181 ~~~f~~vv~a~--~vPVvia 198 (264)
T PRK08227 181 EEGFERITAGC--PVPIVIA 198 (264)
T ss_pred HHHHHHHHHcC--CCcEEEe
Confidence 643 4445532 4687766
No 113
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=86.40 E-value=15 Score=36.01 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+++. .|....-..+...-..|++.+...+. ..++.+...+++++-...++-
T Consensus 64 alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~------~~~~~~~a~~~~~~~~~~~~~ 126 (244)
T cd00640 64 ALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD------FDDAIALAKELAEEDPGAYYV 126 (244)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhCCCCEec
Confidence 4566889999999774 34444455666677789988777543 345666666665542222111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR---AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~---a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
.+ | ......+.....+.++.++++ .+.||+.+-+|.++.-+++ .+|...|+++
T Consensus 127 ~~-~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 127 NQ-F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred CC-C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 00 0 011123344455667777775 5899999999998765554 5688999998
No 114
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=86.35 E-value=17 Score=36.10 Aligned_cols=140 Identities=12% Similarity=0.057 Sum_probs=83.2
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe---CCcccCCCCchhHHH
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPVEKIFL 278 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig---rgDLg~e~~~~~v~~ 278 (510)
-.++|+|+|.+-+=.+..+...+-+.+++.|...-|.-+-.|+ ++.++.++...|.|++= ||-=|..+-. ....
T Consensus 78 ~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~-~~l~ 154 (229)
T PRK09722 78 LADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITVMTVDPGFAGQPFIP-EMLD 154 (229)
T ss_pred HHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEEEEEcCCCcchhccH-HHHH
Confidence 3677999888754323356777778888888888888888884 57799999999988873 3322222211 1111
Q ss_pred HHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCC--CCHHHHHHHHHHHHHHH
Q 010449 279 AQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAG--AYPEIAVKIMRRICIEA 355 (510)
Q Consensus 279 ~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G--~yP~~~V~~m~~i~~~a 355 (510)
--+++-+...++|..+.+. +.... +. .-+......|+|.+++.+---.| .-|.++++.|++...++
T Consensus 155 KI~~lr~~~~~~~~~~~Ie-------VDGGI-~~---~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 155 KIAELKALRERNGLEYLIE-------VDGSC-NQ---KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHHHhcCCCeEEE-------EECCC-CH---HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 1112222223455443221 11111 11 22345667899999986421234 35889999998866554
No 115
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.93 E-value=18 Score=33.59 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=75.0
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecC-------HHHHhchHHHHhh-cCeeEE
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN-------QEGVVNFDDILRE-TDSFMV 262 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt-------~~av~nldeI~~~-~DgI~I 262 (510)
+....+.+.+++.+.|+++|.+.. +-++.+++.... .++.+++++=. .+.++..+.-.+. +|++++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~~--~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADALAG--SDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHhCC--CCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 344445555788899999999885 555555555431 16889999854 4466666666665 799998
Q ss_pred eCCcccCCCC--chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC--ChHhHHHHHH-HHHcCCceEEec
Q 010449 263 ARGDLGMEIP--VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRP--TRAEATDVAN-AVLDGTDCVMLS 332 (510)
Q Consensus 263 grgDLg~e~~--~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~P--traEv~Dv~~-av~~G~D~imLs 332 (510)
..- ...... .+.+...-+++.+.| ..+.|+++-. .|.- +-.++...+. +...|+|++=.+
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 85 VIN-IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred ecc-HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 531 111111 344445555666655 5699988632 1222 2334444433 345799998665
No 116
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=85.76 E-value=22 Score=34.78 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=111.6
Q ss_pred CChhcHHHHHhccCcCCCCEEEEc-CCCCHHHHHHHHHHhccCCCCceEEEEecC-HHHHhc-hHHHHhh-cCee--EEe
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVVN-FDDILRE-TDSF--MVA 263 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~s-fV~sa~dv~~vr~~l~~~~~~~~IiakIEt-~~av~n-ldeI~~~-~DgI--~Ig 263 (510)
++..++..+.+...+.|++.|=+. ..-+.++...++.+.+... +..+.+..-. .+.++. ++.+... .|.+ ++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP-NARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH-SSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc-ccccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 677788777677788999999888 4556677777766544221 2344333322 222333 2222222 4644 444
Q ss_pred CCcccCC----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEeccCCCCC
Q 010449 264 RGDLGME----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGESAAG 338 (510)
Q Consensus 264 rgDLg~e----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs~Eta~G 338 (510)
-.|+-.. ...++....-.++++.++++|..+.+... ...+.+.+++.+++..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 4442111 22345566667889999999999966432 344667788888888665 499999997 78777
Q ss_pred CCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC
Q 010449 339 AYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRG 404 (510)
Q Consensus 339 ~yP~~~V~~m~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~s 404 (510)
-.|.++-+.++.+-+..-+ .+.+ +.+ . ...+|.+...+|-..+|+. |=.|-.
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~--H~H-----n------d~Gla~An~laA~~aGa~~-id~t~~ 215 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGF--HAH-----N------DLGLAVANALAALEAGADR-IDGTLG 215 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEE--EEB-----B------TTS-HHHHHHHHHHTT-SE-EEEBGG
T ss_pred cCHHHHHHHHHHHHHhccCCeEEE--Eec-----C------CccchhHHHHHHHHcCCCE-EEccCc
Confidence 8898887777776554442 1111 000 0 1235566667788889984 444533
No 117
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.72 E-value=19 Score=35.32 Aligned_cols=138 Identities=7% Similarity=0.017 Sum_probs=74.7
Q ss_pred hccCcCCCCEEEEcCCC-CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~-sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v 276 (510)
+.+.+.|+|+|.+..-+ ..+...+.-+.+...|..+.+...=.| -++.+.++++. .|.|.++.-.=|..- +..
T Consensus 82 ~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~~--~~~ 157 (229)
T PLN02334 82 PDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFGG--QSF 157 (229)
T ss_pred HHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCCc--ccc
Confidence 34578899999776653 223333333334444433333332123 34557778888 999988643322111 111
Q ss_pred -HHHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 277 -FLAQKMMIYKCNL--VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 277 -~~~qk~ii~~~~~--~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
+..-.++ +..++ .++|+.+..-+ |. .++......|+|++...+--.--..|.++++.+.+.+.
T Consensus 158 ~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~---e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~ 223 (229)
T PLN02334 158 IPSMMDKV-RALRKKYPELDIEVDGGV----------GP---STIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVE 223 (229)
T ss_pred CHHHHHHH-HHHHHhCCCCcEEEeCCC----------CH---HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 1112222 22233 24676553332 22 24566677899999997665444578888888877655
Q ss_pred HH
Q 010449 354 EA 355 (510)
Q Consensus 354 ~a 355 (510)
++
T Consensus 224 ~~ 225 (229)
T PLN02334 224 KA 225 (229)
T ss_pred Hh
Confidence 43
No 118
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=85.16 E-value=15 Score=38.57 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 218 GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 218 a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+.++.++++..+. .+.+++-+-.++.++-+.+ .+|.+-||..++- +..+++++.+.||||++.
T Consensus 143 ~~gL~~L~~~~~~~--Gl~v~tev~d~~~~~~l~~---~vd~lqIgAr~~~-----------N~~LL~~va~~~kPViLk 206 (335)
T PRK08673 143 EEGLKLLAEAREET--GLPIVTEVMDPRDVELVAE---YVDILQIGARNMQ-----------NFDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHHHHHHHHHHHc--CCcEEEeeCCHHHHHHHHH---hCCeEEECccccc-----------CHHHHHHHHcCCCcEEEe
Confidence 45556666666554 5778888877777665554 5799999976652 245666777899999998
Q ss_pred hhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEecc--CCCCCCCHHHHHHH
Q 010449 298 TQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSG--ESAAGAYPEIAVKI 347 (510)
Q Consensus 298 TqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs~--Eta~G~yP~~~V~~ 347 (510)
|.|. .|-.|+-..+..+. .|.+-++|.. =+..-.||.+.+.+
T Consensus 207 ~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 207 RGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 7655 45567777777664 6787677753 22444677776655
No 119
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=84.85 E-value=16 Score=41.03 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=99.6
Q ss_pred hhcHHHHHhccCcCCCCEEE--EcCCCCHHHHHHHHHHhccCCCCceEEEEecC--HHHHhchHHHHhhcCeeEEeCCcc
Q 010449 192 EKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEGVVNFDDILRETDSFMVARGDL 267 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~--~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt--~~av~nldeI~~~~DgI~IgrgDL 267 (510)
+...+.| ....+.|+|.|- +|-.+.|+.+..+++.+...|.++.++|-|-- .-|+.. ++.+|.|=|-||.+
T Consensus 41 ~atv~Qi-~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a----~~~v~kiRINPGN~ 115 (611)
T PRK02048 41 EACVAQA-KRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVA----AQYAEKVRINPGNY 115 (611)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHH----HHhhCCEEECCCcC
Confidence 3444555 456778999865 45556666666677777778889999999943 333322 23389999999999
Q ss_pred cCC---C------------CchhHHHHHHHHHHHHHHcCCCeEEeh-------hhhHhhhcCCCCChHhH-----HHHHH
Q 010449 268 GME---I------------PVEKIFLAQKMMIYKCNLVGKPVVTAT-------QMLESMIKSPRPTRAEA-----TDVAN 320 (510)
Q Consensus 268 g~e---~------------~~~~v~~~qk~ii~~~~~~gkpvivaT-------qmLeSM~~~~~PtraEv-----~Dv~~ 320 (510)
+-. + .++++.+--+.++.+|+++|+|+=+=+ ++|+.. -+|..-+ .-+.-
T Consensus 116 ~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y----g~tpe~mVeSAle~~~i 191 (611)
T PRK02048 116 VDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY----GDTPEGMVESCMEFLRI 191 (611)
T ss_pred CCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHH
Confidence 874 1 123556666789999999999984433 233322 1233212 22233
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHH
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRIC 352 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~ 352 (510)
+-..|++=+.+|--++.-..++++.+.+..-+
T Consensus 192 ~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 192 CVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 66789999999988887766666666665544
No 120
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=84.18 E-value=19 Score=35.63 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=81.4
Q ss_pred CcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe---CCcccCCCCchhHHHH
Q 010449 203 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPVEKIFLA 279 (510)
Q Consensus 203 ~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig---rgDLg~e~~~~~v~~~ 279 (510)
.+.|+|.|.+- +++..++.++-+++++.|...-+.-+-+| -++.+..++...|.|++= ||-=|..+-. ....-
T Consensus 82 ~~~gad~I~~H-~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~-~~l~K 157 (223)
T PRK08745 82 ADAGATTISFH-PEASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLVMSVNPGFGGQAFIP-SALDK 157 (223)
T ss_pred HHhCCCEEEEc-ccCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEEEEECCCCCCccccH-HHHHH
Confidence 56899988865 55556777777888888888888888888 567789999999988873 3322222211 11111
Q ss_pred HHHHHHHHHHcCCCe--EEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHH
Q 010449 280 QKMMIYKCNLVGKPV--VTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 280 qk~ii~~~~~~gkpv--ivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 354 (510)
-+++-+...+++..+ -+... =+. ..+......|+|.+++.+--.-...|.++++.|++.+.+
T Consensus 158 I~~l~~~~~~~~~~~~IeVDGG----------I~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~~ 221 (223)
T PRK08745 158 LRAIRKKIDALGKPIRLEIDGG----------VKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAA 221 (223)
T ss_pred HHHHHHHHHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHHh
Confidence 112222223445443 22221 111 233456678999999863322224588999988876543
No 121
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=84.11 E-value=6.3 Score=38.87 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCChh-cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCH-----HH-----HhchHHHHhh-
Q 010449 189 TLTEK-DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ-----EG-----VVNFDDILRE- 256 (510)
Q Consensus 189 ~lt~~-D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~-----~a-----v~nldeI~~~- 256 (510)
..+.. |.+.+.+.+++.+++.|+++ +.-+..+++.+...+..+.++.....- .- +...++.++.
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 14 PMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp THHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcC
Confidence 34444 55555578888999999987 446777777776544456666666532 12 3444555544
Q ss_pred cCeeEEe--CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHh---------HHHHHH-HHHc
Q 010449 257 TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE---------ATDVAN-AVLD 324 (510)
Q Consensus 257 ~DgI~Ig--rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraE---------v~Dv~~-av~~ 324 (510)
+|+|-+- .|-++-.- ...+..--+++++.|+.+|.|+|+ . +.|+..| +...+. +...
T Consensus 90 Ad~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp -SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred Cceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHHHHHHHHHHHHh
Confidence 5654432 22222222 356667778999999999999987 3 4566666 233333 6789
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHHh
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAE 356 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 356 (510)
|+|.+=.+.=.. .....+.++.|++++..+.
T Consensus 159 GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 159 GADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp T-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred CCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 999987764333 5666788999999887554
No 122
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.10 E-value=6.6 Score=38.23 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHhccCcCCCCEEEEc--CCCCHH--HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccC--
Q 010449 196 EDILRWGVPNNIDMIALS--FVRKGS--DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM-- 269 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~s--fV~sa~--dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~-- 269 (510)
+.+ +.+.+.|+|+|.+- ..+.++ .+.++.+.+++.+ ++.+++.+.|++-...+.+ .-+|.+.+...++.-
T Consensus 83 ~~~-~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~ 158 (219)
T cd04729 83 EEV-DALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEET 158 (219)
T ss_pred HHH-HHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccc
Confidence 355 66788999987662 222232 5566665565555 6788887777654322222 125877654222211
Q ss_pred -CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 270 -EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 270 -e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
......+ ..-+++ ....+.|++....+- ...|+..++..|+|++++.
T Consensus 159 ~~~~~~~~-~~l~~i---~~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 159 AKTEDPDF-ELLKEL---RKALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred cCCCCCCH-HHHHHH---HHhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 1111111 122222 223379998754432 2356778888999999986
No 123
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=84.03 E-value=21 Score=35.19 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=82.9
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe---CCcccCCC---Cchh
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEI---PVEK 275 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig---rgDLg~e~---~~~~ 275 (510)
-.++|+|+|.+ ++++.+++.++-+++++.|...-+.-.=+| -++.++.++...|.+++= +|-=|... ++++
T Consensus 77 ~~~~gad~i~~-H~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lek 153 (220)
T PRK08883 77 FAKAGASMITF-HVEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDK 153 (220)
T ss_pred HHHhCCCEEEE-cccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHH
Confidence 36789998775 566667888888888888888888888888 567799999999988872 22222111 1122
Q ss_pred HHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 276 IFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 276 v~~~qk~ii~~~~~~g--kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
+..+ -+...++| .|+.+..-+ + ...+...+..|+|++...+--.....|.++++.+++...
T Consensus 154 I~~l----~~~~~~~~~~~~I~vdGGI----------~---~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 154 LRAV----RKMIDESGRDIRLEIDGGV----------K---VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELA 216 (220)
T ss_pred HHHH----HHHHHhcCCCeeEEEECCC----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 2222 22222333 565443221 1 234456677899999987543334568888888877543
No 124
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=83.85 E-value=17 Score=38.34 Aligned_cols=203 Identities=13% Similarity=0.119 Sum_probs=112.1
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEE-cCCCCHH------HHHHHHHHhccCCCCceEEEEecCHHHH
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIAL-SFVRKGS------DLVNVRKVLGPHAKNIQLMSKVENQEGV 247 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~-sfV~sa~------dv~~vr~~l~~~~~~~~IiakIEt~~av 247 (510)
|-|..-|+.. ++..++..|.+...+.|++.|=+ ||+ +++ |-.++.+.+... ....+.+-+=+.+++
T Consensus 55 RDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~~~~~~~l~~n~~di 127 (347)
T PLN02746 55 RDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-EGARFPVLTPNLKGF 127 (347)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-cCCceeEEcCCHHHH
Confidence 4455555553 46666666657778899999855 566 431 322222223221 112222223355555
Q ss_pred hchHHHHhhcCeeEE--eCCcccC----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChHh---HHH
Q 010449 248 VNFDDILRETDSFMV--ARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESM-IKSPRPTRAE---ATD 317 (510)
Q Consensus 248 ~nldeI~~~~DgI~I--grgDLg~----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM-~~~~~PtraE---v~D 317 (510)
+..-+- -.|.|.+ .-.|+=. ....++.....+++++.|+++|..+... + || ..+|.-+|++ +.+
T Consensus 128 e~A~~~--g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 128 EAAIAA--GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred HHHHHc--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHHHHH
Confidence 544321 2464433 3333211 2334677777789999999999988421 0 11 1245455544 444
Q ss_pred HHH-HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc-ccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCC
Q 010449 318 VAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES-SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARA 395 (510)
Q Consensus 318 v~~-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a 395 (510)
++. +...|+|.|.|. +|.=-..|.++.++++.+..+.-. .+.+ ++++ ..-+|.+-..+|...+|
T Consensus 202 ~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~~~~~i~~--H~Hn-----------d~GlA~AN~lAA~~aGa 267 (347)
T PLN02746 202 VAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVVPVDKLAV--HFHD-----------TYGQALANILVSLQMGI 267 (347)
T ss_pred HHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhCCCCeEEE--EECC-----------CCChHHHHHHHHHHhCC
Confidence 443 778899999997 777777899999998887643211 0110 1110 11345555566777888
Q ss_pred cEEEEEcCCc
Q 010449 396 KLIVVLTRGG 405 (510)
Q Consensus 396 ~aIvv~T~sG 405 (510)
+ .|=-|-.|
T Consensus 268 ~-~vd~sv~G 276 (347)
T PLN02746 268 S-TVDSSVAG 276 (347)
T ss_pred C-EEEEeccc
Confidence 8 34444444
No 125
>PRK15447 putative protease; Provisional
Probab=83.82 E-value=7.6 Score=40.06 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=76.1
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCC-------CHHHHHHHHHHhccCCCCceE-EEEe-cCHHHHhchHHHHhh-cCeeEE
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVR-------KGSDLVNVRKVLGPHAKNIQL-MSKV-ENQEGVVNFDDILRE-TDSFMV 262 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~-------sa~dv~~vr~~l~~~~~~~~I-iakI-Et~~av~nldeI~~~-~DgI~I 262 (510)
...+++-....+.|+|.|-+.... +.+++.++.+++.++|+.+.+ +..| -..+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 344555233346799999997432 669999999999888877665 3354 446666777777775 367776
Q ss_pred eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 263 ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 263 grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|+|. +.. +++.|.|+...|||= -+-.+.. .-.-..|++.+.||-|-.
T Consensus 95 --~d~g~------l~~--------~~e~~~~l~~d~~ln--------i~N~~a~--~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 --NDLGA------VRL--------LAERGLPFVAGPALN--------CYNAATL--ALLARLGATRWCMPVELS 142 (301)
T ss_pred --eCHHH------HHH--------HHhcCCCEEEecccc--------cCCHHHH--HHHHHcCCcEEEECCcCC
Confidence 35543 222 233499999988853 1111122 224456999999998875
No 126
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.43 E-value=19 Score=37.56 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=80.3
Q ss_pred hcHHHHHhccCcCCCCEEEEcCC--C-CH--------HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-----
Q 010449 193 KDKEDILRWGVPNNIDMIALSFV--R-KG--------SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----- 256 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV--~-sa--------~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----- 256 (510)
.+..++.+.+.+.|+|+|-+.+- . +. +.+.++-+.+.+. .++.+++|+- + .+.++.++++.
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~~G 188 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHHcC
Confidence 33344435556678999877552 1 11 1122222222221 2589999984 2 24456666654
Q ss_pred cCeeEEe-CCcccCCCC--------------chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH
Q 010449 257 TDSFMVA-RGDLGMEIP--------------VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA 321 (510)
Q Consensus 257 ~DgI~Ig-rgDLg~e~~--------------~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a 321 (510)
+|||.+. |. .+..+. ....+...+.+-..++....|+|-..-+. -..|+..+
T Consensus 189 adgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e~ 255 (325)
T cd04739 189 ADGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVKY 255 (325)
T ss_pred CCeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHHH
Confidence 5887764 32 111111 11233444555555555678887655544 24678889
Q ss_pred HHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccc
Q 010449 322 VLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLD 360 (510)
Q Consensus 322 v~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~ 360 (510)
++.|||++++...--. +-| ..+.+|+++.+.++.
T Consensus 256 l~aGA~~Vqv~ta~~~-~gp----~~~~~i~~~L~~~l~ 289 (325)
T cd04739 256 LLAGADVVMTTSALLR-HGP----DYIGTLLAGLEAWME 289 (325)
T ss_pred HHcCCCeeEEehhhhh-cCc----hHHHHHHHHHHHHHH
Confidence 9999999999833221 013 356667777766543
No 127
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.23 E-value=46 Score=33.80 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=98.5
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEc-CCCCH-----HHHHHHHHHhccCCCCceEEEEecCHHHHh
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS-FVRKG-----SDLVNVRKVLGPHAKNIQLMSKVENQEGVV 248 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~s-fV~sa-----~dv~~vr~~l~~~~~~~~IiakIEt~~av~ 248 (510)
|-|..-|+. .++..++..|.+...+.|++.|=+- |+... .|-.++.+.+... .+.++.+..-+.++++
T Consensus 7 RDG~Q~~~~-----~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 7 RDGLQNEKT-----FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGAE 80 (274)
T ss_pred CCCCcCCCC-----CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHHH
Confidence 335555554 3576777777677788999998664 32221 2333455555432 3566666665555544
Q ss_pred chHHHHhh-cCe--eEEeCCcc----cCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-
Q 010449 249 NFDDILRE-TDS--FMVARGDL----GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN- 320 (510)
Q Consensus 249 nldeI~~~-~Dg--I~IgrgDL----g~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~- 320 (510)
+. ++. .|. +++.-.|+ -.....+.....-.+.++.++++|+-+.+.-.+-=+.-...+-+...+.+++.
T Consensus 81 ~A---~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 81 RA---LAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred HH---HHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 33 322 353 44444442 11122345666667889999999998753211100000111224455666665
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHH
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 354 (510)
+...|+|.|-|. +|.=...|.++-+.+..+...
T Consensus 158 ~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 158 LLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 567899999997 777778899988888777543
No 128
>PLN02321 2-isopropylmalate synthase
Probab=83.19 E-value=34 Score=39.09 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=100.4
Q ss_pred CChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCc---eEEEEec-----CHHHHhchHHHHhhc---
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNI---QLMSKVE-----NQEGVVNFDDILRET--- 257 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~---~IiakIE-----t~~av~nldeI~~~~--- 257 (510)
++..++..|.+...+.|+|.|=+.| .-|+.|.+.++.+.......+ .++++|- +.++++..-+=+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 6778888886777889999998766 567778877777654321111 1223332 344443322211111
Q ss_pred -CeeEEeCCcccC----CCCchhHHHHHHHHHHHHHHcCCC-eEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEE
Q 010449 258 -DSFMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKP-VVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVM 330 (510)
Q Consensus 258 -DgI~IgrgDLg~----e~~~~~v~~~qk~ii~~~~~~gkp-vivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~im 330 (510)
=.++++-.|+-. ....+++...-+++++.|+.+|.. +.+. +....+-.+..+.+++. ++..|+|.|.
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs------~EDa~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS------PEDAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe------cccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 135555555422 234577888888999999999986 4442 22222333445555555 5668999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 331 LSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 331 Ls~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
|. +|.=...|.+.-+++..+.+..
T Consensus 259 L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 259 IP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred ec-ccccCCCHHHHHHHHHHHHHhc
Confidence 97 8888889999999988887654
No 129
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=82.67 E-value=31 Score=34.78 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=41.9
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEec--C-HHHHhchHHHHhh-cCeeEEeCCcccC
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE--N-QEGVVNFDDILRE-TDSFMVARGDLGM 269 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIE--t-~~av~nldeI~~~-~DgI~IgrgDLg~ 269 (510)
+.+.+.|+|||=.+|..+ ++.+++.+....-.+..+.=|= | .++++++.+.++. ++|+.++|.=+..
T Consensus 167 ~~a~e~GAD~vKt~~~~~---~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 167 RVAAELGADIVKTNYTGD---PESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHCCCEEeeCCCCC---HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 456789999999998753 4555555432222344444443 4 3566667777766 7899988865543
No 130
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=82.31 E-value=22 Score=34.84 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=91.5
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--------cCe
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--------TDS 259 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--------~Dg 259 (510)
|..|+.|.+.+-+.|.++++..|+++ +..+..+++.|. +.++++.+=|=-|.|-...+.-+.. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67899998888788999999999884 678999999885 4578888888777666544332221 343
Q ss_pred eEEeCCcccC--CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCC
Q 010449 260 FMVARGDLGM--EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESA 336 (510)
Q Consensus 260 I~IgrgDLg~--e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta 336 (510)
|=+-- ++|. +=.+..+..-.+++.+.|. |+|+-+ ++|. +.-+..|+..... ++..|+|.+=-|
T Consensus 87 iDvv~-n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs---- 152 (211)
T TIGR00126 87 VDMVI-NIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS---- 152 (211)
T ss_pred EEeec-chHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC----
Confidence 32210 1111 0012344444456666664 888755 3432 2344466665555 788899998655
Q ss_pred CCCC----HHHHHHHHHHHHH
Q 010449 337 AGAY----PEIAVKIMRRICI 353 (510)
Q Consensus 337 ~G~y----P~~~V~~m~~i~~ 353 (510)
.|.. ..+.++.|++++.
T Consensus 153 TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHhc
Confidence 4433 3577888888765
No 131
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=82.22 E-value=4.9 Score=44.83 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=100.2
Q ss_pred hhcHHHHHhccCcCCCCEEE--EcCCCCHHHHHHHHHHhccCCCCceEEEEecC--HHHHhchHHHHhhcCeeEEeCCcc
Q 010449 192 EKDKEDILRWGVPNNIDMIA--LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEGVVNFDDILRETDSFMVARGDL 267 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~--~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt--~~av~nldeI~~~~DgI~IgrgDL 267 (510)
+...+.| ....+.|++.|- +|-.+.|+.+..+++.|...|.++.++|-|-- .-|+.. ++.+|.|=|.||.+
T Consensus 45 ~atv~Qi-~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a----~~~vdkiRINPGNi 119 (606)
T PRK00694 45 DGTVRQI-CALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV----ADFVDKVRINPGNY 119 (606)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH----HHhcCceEECCccc
Confidence 3444555 456778999865 55566666777777778888889999999943 233322 23389999999999
Q ss_pred cCC---------------CCchhHHHHHHHHHHHHHHcCCCeEEeh-------hhhHhhhcCCCCChHhH-----HHHHH
Q 010449 268 GME---------------IPVEKIFLAQKMMIYKCNLVGKPVVTAT-------QMLESMIKSPRPTRAEA-----TDVAN 320 (510)
Q Consensus 268 g~e---------------~~~~~v~~~qk~ii~~~~~~gkpvivaT-------qmLeSM~~~~~PtraEv-----~Dv~~ 320 (510)
+-. -.++++..--+.++.+|+++|+|+=+=+ ++++.. -+|..-+ .-+.-
T Consensus 120 ~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y----G~tpegmVeSAle~~~i 195 (606)
T PRK00694 120 VDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY----GDTIEGMVYSALEYIEV 195 (606)
T ss_pred CCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence 861 1234666677899999999999984433 233321 1332212 22233
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
+-..|++=+.+|--++ .|...|+.-+.+.++.++
T Consensus 196 ~e~~~f~diviS~KsS---nv~~mi~AyrlLa~~~d~ 229 (606)
T PRK00694 196 CEKLDYRDVVFSMKSS---NPKVMVAAYRQLAKDLDA 229 (606)
T ss_pred HHHCCCCcEEEEEEcC---CHHHHHHHHHHHHHHhhc
Confidence 5678999999986554 566677766666666654
No 132
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=82.22 E-value=16 Score=39.50 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCC-CCceEE--EEecCHHHHhchHHHHhhcCeeEEeC--------CcccCCCCc----hhHHHHHHHH
Q 010449 219 SDLVNVRKVLGPHA-KNIQLM--SKVENQEGVVNFDDILRETDSFMVAR--------GDLGMEIPV----EKIFLAQKMM 283 (510)
Q Consensus 219 ~dv~~vr~~l~~~~-~~~~Ii--akIEt~~av~nldeI~~~~DgI~Igr--------gDLg~e~~~----~~v~~~qk~i 283 (510)
+++..+.+.+..-. +-+.|+ ||+.+.-++ ++.++..+|.|++|- +.-|.++|- ++....-+++
T Consensus 192 kEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~v--l~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~i 269 (417)
T PTZ00005 192 KELDYFSKALENPQRPFLAILGGAKVADKIQL--IKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEI 269 (417)
T ss_pred HHHHHHHHHhcCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHH
Confidence 46666666664221 112233 577665555 777788899999882 233444543 3555666799
Q ss_pred HHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCce-EE-eccCCCCCCC----HHHHHHHHHHHHHHHhc
Q 010449 284 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC-VM-LSGESAAGAY----PEIAVKIMRRICIEAES 357 (510)
Q Consensus 284 i~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~-im-Ls~Eta~G~y----P~~~V~~m~~i~~~aE~ 357 (510)
++.|...|+++++-+-.. +. +-+..+... +. .+.+...|.+ =-++++...+++..+..
T Consensus 270 l~~a~~~~~~I~lPvD~~-------------v~---~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akT 333 (417)
T PTZ00005 270 MEKAKEKNVKIHLPVDFV-------------CA---DKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKT 333 (417)
T ss_pred HHHHHhcCCEEeCCceEE-------------Ee---cccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCE
Confidence 999999999887533222 11 000111111 11 1111222222 13678999999999998
Q ss_pred ccchHH--HHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCC
Q 010449 358 SLDYRA--VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAV 418 (510)
Q Consensus 358 ~~~~~~--~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~~ 418 (510)
.+|.-. .|+. +.=..-+.+++.+...+. +.+|..||- -|.|+..+.++--.-
T Consensus 334 V~wNGP~GvFE~-----~~F~~GT~~i~~aia~~t-~~~a~sivG---GGdt~aAi~~~g~~~ 387 (417)
T PTZ00005 334 IVWNGPQGVFEM-----PNFAKGSIAMLDAVVKAT-EKGAITIVG---GGDTASLVEKTGAAN 387 (417)
T ss_pred EEEECCCccccC-----CcchHHHHHHHHHHHHhc-cCCCEEEEe---CcHHHHHHHHcCCCC
Confidence 877422 1210 000112344444433321 234555554 778988888865433
No 133
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.95 E-value=2.8 Score=44.24 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=43.6
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
..+-.+-+.+||..++.+..++|+++|+|++=|+-+||..+...+.++++|+
T Consensus 94 ~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp TSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 3467788889999889999999999999999999999999987777777765
No 134
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=81.85 E-value=21 Score=38.63 Aligned_cols=137 Identities=16% Similarity=0.152 Sum_probs=79.8
Q ss_pred HHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCch
Q 010449 197 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVE 274 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~ 274 (510)
++ +.+.++|+|+|.++.-.+...+.++.+.+++.|. .++. .+-....++.+....+. +|.|.+++|--+...+..
T Consensus 73 ~v-~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~--~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~ 149 (430)
T PRK07028 73 EV-EMAAKAGADIVCILGLADDSTIEDAVRAARKYGV--RLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD 149 (430)
T ss_pred HH-HHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCC--EEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC
Confidence 55 6678899999998644343445666666665543 3333 12212234555666665 799988876432222221
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 275 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
. ....+++. ...+.|+.+..-+ +. ..+..++..|+|++.+..--..-.-|.++++.+++.++
T Consensus 150 ~-~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 P-LELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred h-HHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 1 12222222 2346888664321 22 33566788899999987665555678888887777654
No 135
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=14 Score=39.05 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=85.3
Q ss_pred hcHHHHHhccCcCCCCEEEEcCC----------CCHHHHHHHHHHhccCCCCceEEEEe----cCHH-HHhchHHHHhh-
Q 010449 193 KDKEDILRWGVPNNIDMIALSFV----------RKGSDLVNVRKVLGPHAKNIQLMSKV----ENQE-GVVNFDDILRE- 256 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV----------~sa~dv~~vr~~l~~~~~~~~IiakI----Et~~-av~nldeI~~~- 256 (510)
.+.+++ +.+++.|+|.|-+.+- -+.+|+++..+++.++|+...+..-+ +..+ ..+-++...+.
T Consensus 14 g~l~~l-~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 14 GNLEDL-KAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCHHHH-HHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 466788 7889999999888844 67788999999998888654433221 1112 23344555554
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~g--kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
.|+|+++ |+|+ +..+++.+ .|+.+.||+- -|-++ .+.-+-..|+.-++|+-|
T Consensus 93 vDaviv~--Dpg~--------------i~l~~e~~p~l~ih~S~q~~--------v~N~~--~~~f~~~~G~~rvVl~rE 146 (347)
T COG0826 93 VDAVIVA--DPGL--------------IMLARERGPDLPIHVSTQAN--------VTNAE--TAKFWKELGAKRVVLPRE 146 (347)
T ss_pred CCEEEEc--CHHH--------------HHHHHHhCCCCcEEEeeeEe--------cCCHH--HHHHHHHcCCEEEEeCcc
Confidence 6999995 6654 67788888 9999999965 11121 223345569999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 010449 335 SAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 335 ta~G~yP~~~V~~m~~i~~~a 355 (510)
.+ ...+.+|.+++
T Consensus 147 ls--------~~ei~~i~~~~ 159 (347)
T COG0826 147 LS--------LEEIKEIKEQT 159 (347)
T ss_pred CC--------HHHHHHHHHhC
Confidence 76 44455554443
No 136
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=81.43 E-value=16 Score=35.29 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=86.2
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhc-------hHHHHhh-cCe
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVN-------FDDILRE-TDS 259 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~n-------ldeI~~~-~Dg 259 (510)
|..++.|.+.+.+.+.+.+++.|+++ +..+..+++.+.. ..+.+-+=+=.+.|-.. .++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67788888888788888899999988 6778888887754 33555555544444333 3333332 565
Q ss_pred eEEeCCcccCCC--CchhHHHHHHHHHHHHHHcCCCeEE--ehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccC
Q 010449 260 FMVARGDLGMEI--PVEKIFLAQKMMIYKCNLVGKPVVT--ATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 334 (510)
Q Consensus 260 I~IgrgDLg~e~--~~~~v~~~qk~ii~~~~~~gkpviv--aTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~E 334 (510)
+-+- -+.|.-. ..+.+..-.+++.+.|. |+|+.+ .+..| +..++..... ++..|+|.|=-|
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l---------~~~~i~~a~ria~e~GaD~IKTs-- 151 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL---------TDEEIIKACEIAIEAGADFIKTS-- 151 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC---------CHHHHHHHHHHHHHhCCCEEEcC--
Confidence 5442 1111110 11234444455666664 888744 33222 3566666655 788899988654
Q ss_pred CCCCCC----HHHHHHHHHHHHH
Q 010449 335 SAAGAY----PEIAVKIMRRICI 353 (510)
Q Consensus 335 ta~G~y----P~~~V~~m~~i~~ 353 (510)
.|.. -.+.++.|++++.
T Consensus 152 --TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 --TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred --CCCCCCCCCHHHHHHHHHHhC
Confidence 4443 2467777877765
No 137
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.41 E-value=16 Score=35.68 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=73.2
Q ss_pred hccCcCCCCEEEEcCCCC---HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeC-CcccCCCCch
Q 010449 200 RWGVPNNIDMIALSFVRK---GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVAR-GDLGMEIPVE 274 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~s---a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~Igr-gDLg~e~~~~ 274 (510)
+.+.+.|+|+|++++-+. .+++.+..+...+. ++..|.-+-+ .+.+..+.+. .|.|-+.+ +-.|...+..
T Consensus 79 ~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~~ 153 (223)
T PRK04302 79 EAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPVS 153 (223)
T ss_pred HHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCCC
Confidence 455678999999998633 34444444444443 4555543333 3444454444 35555444 3334333311
Q ss_pred -hHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 275 -KIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 275 -~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
..+..-.++++..++. +.|++... ..=+ -.++..+...|+||++..+-...-..|.+.++-+
T Consensus 154 ~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 154 KAKPEVVEDAVEAVKKVNPDVKVLCGA---------GIST---GEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 2233445555666653 57776531 1222 3455666679999999987776666676665543
No 138
>PRK06852 aldolase; Validated
Probab=81.22 E-value=15 Score=38.06 Aligned_cols=111 Identities=14% Similarity=0.025 Sum_probs=62.2
Q ss_pred CCChHhHHHHHHHHHcC------CceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc-cch-HHHHHHHHhcCCCCCCchH
Q 010449 309 RPTRAEATDVANAVLDG------TDCVMLSGESAAGAYPEIAVKIMRRICIEAESS-LDY-RAVFKEMIRSTPLPMSPLE 380 (510)
Q Consensus 309 ~PtraEv~Dv~~av~~G------~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~-~~~-~~~~~~~~~~~~~~~~~~~ 380 (510)
.|...-+++|-.|+..| +|||..+-=-- +.+=-+.++.+.+++++++++ +.- -..|.+- ....... ..+
T Consensus 112 ~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG-~~i~~~~-~~~ 188 (304)
T PRK06852 112 DPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRG-KAVKDEK-DPH 188 (304)
T ss_pred CccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccC-cccCCCc-cHH
Confidence 35555668899999999 88887752211 334467888888888888875 110 0011110 0011111 124
Q ss_pred HHHHHHHHHHHhcCCcEEEE-EcCC---c--hHHHHHHhhCCCCcEEEE
Q 010449 381 SLASSAVRTANKARAKLIVV-LTRG---G--TTAKLVAKYRPAVPILSV 423 (510)
Q Consensus 381 ~ia~~av~~A~~~~a~aIvv-~T~s---G--~tA~~iSr~RP~~PIiav 423 (510)
+...|+++|-.++|+.|=+ ||.. | .+-+.+...-.++||+.-
T Consensus 189 -~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvia 236 (304)
T PRK06852 189 -LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCA 236 (304)
T ss_pred -HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEe
Confidence 4455669999999995533 3310 3 344444444434676655
No 139
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.15 E-value=17 Score=35.84 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=76.4
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEE--ecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~ 277 (510)
+.|++.|+|+|-++ ++-.++.++|+.+.. + .+|.- ..+.+...... -.-+|.+.+|+- +.. .....-|
T Consensus 81 dlA~~~~adGVHLg--~~d~~~~~~r~~~~~---~-~iiG~s~~~s~~~a~~A~--~~gaDYv~~Gpv-~t~-tK~~~~p 150 (221)
T PRK06512 81 RIAGRVKADGLHIE--GNLAALAEAIEKHAP---K-MIVGFGNLRDRHGAMEIG--ELRPDYLFFGKL-GAD-NKPEAHP 150 (221)
T ss_pred HHHHHhCCCEEEEC--ccccCHHHHHHhcCC---C-CEEEecCCCCHHHHHHhh--hcCCCEEEECCC-CCC-CCCCCCC
Confidence 44677899999998 333457777777642 1 24432 22333221111 123699999986 321 1111100
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 278 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 278 ~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
.--..+-+.|+....||+.-..+ + ..++......|+|++...+.-..-..|.++++-+.+++.
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 00011113466678998653221 1 244566667899999998887778889999998887764
No 140
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.80 E-value=37 Score=32.28 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE-EecCHHHHhchHHHHhh-cCeeEEeCCcccC
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS-KVENQEGVVNFDDILRE-TDSFMVARGDLGM 269 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia-kIEt~~av~nldeI~~~-~DgI~IgrgDLg~ 269 (510)
+.+...+.+.+++.|++.|-+.+ ++......++.+.+..+ ++.|-+ -|=|.+ ++++.+.. +|+++.+-.|
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~~---~~~~a~~~Ga~~i~~p~~~--- 86 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTPE---QADAAIAAGAQFIVSPGLD--- 86 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEEEcCCCC---
Confidence 33443443677889999999985 56666666666554432 333222 333333 44555554 6888754322
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 270 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 270 e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..++.+|+..|.|++. ..+-.+++..|...|+|.+.+.
T Consensus 87 -----------~~~~~~~~~~~~~~i~--------------gv~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 -----------PEVVKAANRAGIPLLP--------------GVATPTEIMQALELGADIVKLF 124 (190)
T ss_pred -----------HHHHHHHHHcCCcEEC--------------CcCCHHHHHHHHHCCCCEEEEc
Confidence 3688889999998763 1223355677888999999984
No 141
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.69 E-value=40 Score=32.19 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=75.0
Q ss_pred HHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCH-HHHhchHHHHh-hcCeeEEeCCcccCCCCch
Q 010449 197 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQ-EGVVNFDDILR-ETDSFMVARGDLGMEIPVE 274 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~-~av~nldeI~~-~~DgI~IgrgDLg~e~~~~ 274 (510)
.+ +.+.+.|+|+|.++...+...+.++.+++++.| +++++-+-++ .-++.+....+ -+|.+-+.+|-=+...+..
T Consensus 68 ~~-~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~ 144 (206)
T TIGR03128 68 EA-EQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQN 144 (206)
T ss_pred HH-HHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCC
Confidence 45 556789999999888766666777777777654 5555543222 12233344444 4798888765322222221
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHH
Q 010449 275 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 351 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i 351 (510)
.+. ++-+..+....+.+.++ . --+.. .+..+...|+|++.+.+.-..-+-|.++++.++++
T Consensus 145 ~~~----~i~~l~~~~~~~~i~v~--------G-GI~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 145 PFE----DLQTILKLVKEARVAVA--------G-GINLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CHH----HHHHHHHhcCCCcEEEE--------C-CcCHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 211 12222222223434321 1 11332 34466778999999865543345688888877654
No 142
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=80.66 E-value=4.9 Score=42.36 Aligned_cols=137 Identities=17% Similarity=0.205 Sum_probs=77.7
Q ss_pred HHHHHhccCcCCCCEE--EEcCCCCHHHHHHHHHHhccCCCCceEEEEe--cCHHHHhchHHHHhhcCeeEEeCCcccCC
Q 010449 195 KEDILRWGVPNNIDMI--ALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV--ENQEGVVNFDDILRETDSFMVARGDLGME 270 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I--~~sfV~sa~dv~~vr~~l~~~~~~~~IiakI--Et~~av~nldeI~~~~DgI~IgrgDLg~e 270 (510)
.+.| ....+.|+|.| ++|-.+.++.+.++++.|.+.|.+++++|-| .-..|++.++ ..|.|=|-||.++-+
T Consensus 34 v~QI-~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~----~v~kiRINPGNi~~~ 108 (359)
T PF04551_consen 34 VAQI-KRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIE----AVDKIRINPGNIVDE 108 (359)
T ss_dssp HHHH-HHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHH----C-SEEEE-TTTSS--
T ss_pred HHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHH----HhCeEEECCCccccc
Confidence 3445 44567899975 5666667777777788888889999999999 4455554432 389999999999632
Q ss_pred C--CchhHHHHHHHHHHHHHHcCCCe--EEehhhhHh-hhcCCCCChHhH-----HHHHHHHHcCCceEEeccCCC
Q 010449 271 I--PVEKIFLAQKMMIYKCNLVGKPV--VTATQMLES-MIKSPRPTRAEA-----TDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 271 ~--~~~~v~~~qk~ii~~~~~~gkpv--ivaTqmLeS-M~~~~~PtraEv-----~Dv~~av~~G~D~imLs~Eta 336 (510)
+ +...+.+--+.++++|+++|+|+ ++=.-=|+. |....-||..-+ ..+.-+-..|+|=+.+|-=++
T Consensus 109 ~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsS 184 (359)
T PF04551_consen 109 FQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSS 184 (359)
T ss_dssp --SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBS
T ss_pred ccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeC
Confidence 2 22356677889999999999997 432222211 111112222211 223335566778787775544
No 143
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=80.50 E-value=20 Score=34.63 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=69.3
Q ss_pred hccCcCCCCEEEEcCCCC-HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHH
Q 010449 200 RWGVPNNIDMIALSFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~s-a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~ 277 (510)
+.+.+.|+|+|.+.-..- .++++++.+..... .+..++-+-+.+- +..+.+. .|.+.+..-|.... + .++
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~--g~~~~v~v~~~~e---~~~~~~~g~~~i~~t~~~~~~~-~-~~~- 159 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELAREL--GMEVLVEVHDEEE---LERALALGAKIIGINNRDLKTF-E-VDL- 159 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHc--CCeEEEEECCHHH---HHHHHHcCCCEEEEeCCCcccc-C-cCH-
Confidence 556789999998543222 24555554444333 3444555544443 4444443 68888885554322 1 122
Q ss_pred HHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHH
Q 010449 278 LAQKMMIYKCNL--VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK 346 (510)
Q Consensus 278 ~~qk~ii~~~~~--~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~ 346 (510)
..+.+.++. .+.|++...- .=+. .|+..+...|+|++++..--.....|.++++
T Consensus 160 ---~~~~~l~~~~~~~~pvia~gG---------I~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 160 ---NTTERLAPLIPKDVILVSESG---------ISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred ---HHHHHHHHhCCCCCEEEEEcC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 222222333 3678776433 2233 4556666679999999876556666777765
No 144
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=80.33 E-value=6 Score=43.98 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc-------cCCCCceEEEEecCHHHHhchHHHHhhc-C---eeEEe-----------
Q 010449 206 NIDMIALSFVRKGSDLVNVRKVLG-------PHAKNIQLMSKVENQEGVVNFDDILRET-D---SFMVA----------- 263 (510)
Q Consensus 206 g~d~I~~sfV~sa~dv~~vr~~l~-------~~~~~~~IiakIEt~~av~nldeI~~~~-D---gI~Ig----------- 263 (510)
+--|+.+|++++.++++--.+.+. -...-++.-..|||..|.-+++||+-.. | |+=-|
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 344889999999999988766543 2224689999999999999999999863 2 33333
Q ss_pred -----------CCcccCCCCchhHHHHHHHHHHHHHHcCCCe--EEehhhhHh--hhcCCCCChHhHHHHHHHHHcCCce
Q 010449 264 -----------RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV--VTATQMLES--MIKSPRPTRAEATDVANAVLDGTDC 328 (510)
Q Consensus 264 -----------rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv--ivaTqmLeS--M~~~~~PtraEv~Dv~~av~~G~D~ 328 (510)
|..++++.| =+....+..+..|++.|... ++|.++--. |..++.--..=..|=..-+.+|+||
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 344333333 46678889999999999765 333332211 2122211111123334478899999
Q ss_pred EEec
Q 010449 329 VMLS 332 (510)
Q Consensus 329 imLs 332 (510)
-+..
T Consensus 361 ~WVa 364 (526)
T PF01274_consen 361 AWVA 364 (526)
T ss_dssp EEES
T ss_pred cccc
Confidence 8885
No 145
>PLN03034 phosphoglycerate kinase; Provisional
Probab=80.10 E-value=11 Score=41.48 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=157.0
Q ss_pred HHHHHHHHHhCCCeEEEeecCCC-H---HHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGT-H---EYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEIT 110 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~-~---~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~ 110 (510)
...|+.|++.|..+.- +||-. + +....+-.-.+..++.++++|...=|.-||+.+- .+ -.++.|+.+.
T Consensus 121 lpTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~-~i-----~~l~~GeVlL 192 (481)
T PLN03034 121 IPTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK-LV-----ASLPEGGVLL 192 (481)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHH-HH-----hcCCCCcEEE
Confidence 4588999999988755 58843 2 1122222233334456788888888888888773 11 1455666665
Q ss_pred EEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCcccCCccccCCCC
Q 010449 111 VSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTL 190 (510)
Q Consensus 111 l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~vnlp~~~~~lp~l 190 (510)
|-.---..+++ -|.++|.+.+...-.||+.|.-= +- ++..-++ -| +|
T Consensus 193 LENvRF~~eE~----~nd~~fa~~LA~l~DiyVNDAFg---ta--HR~haS~------------------vG----i~-- 239 (481)
T PLN03034 193 LENVRFYKEEE----KNEPEFAKKLASLADLYVNDAFG---TA--HRAHAST------------------EG----VT-- 239 (481)
T ss_pred EeccCcCcccc----cCcHHHHHHHHhhCCEEEecchh---hh--Hhcccch------------------hh----hh--
Confidence 54220001111 14456777776655578887211 10 1000000 00 00
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC-CceEE--EEecCHHHHhchHHHHhhcCeeEEeCC--
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLM--SKVENQEGVVNFDDILRETDSFMVARG-- 265 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~-~~~Ii--akIEt~~av~nldeI~~~~DgI~Igrg-- 265 (510)
++.-..-+-++ =.+++..+.+.+..-.+ -+.|+ ||+.+.-++ ++.+++.+|.+++|-|
T Consensus 240 ---------~~l~ps~aG~L------mekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~ma 302 (481)
T PLN03034 240 ---------KFLKPSVAGFL------LQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGV--IESLLEKCDILLLGGGMI 302 (481)
T ss_pred ---------hhcCcchhhHH------HHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHH
Confidence 00000000001 12356666565543211 12233 577776665 7778888999999832
Q ss_pred -----cccCCCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 266 -----DLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 266 -----DLg~e~~~----~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
-+|.++|. ++....-++|++.+++.|+.+++-....-.=...+...+. ..++ ..+-+ |...|.
T Consensus 303 ~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~-~~~~-~~Ip~--~~~~lD---- 374 (481)
T PLN03034 303 FTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSK-IVPA-SAIPD--GWMGLD---- 374 (481)
T ss_pred HHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeE-Eeeh-hcCCC--CCEEEe----
Confidence 24566654 3455666799999999998776532222000000000111 1111 11222 223333
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccchHH--HHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhh
Q 010449 337 AGAYPEIAVKIMRRICIEAESSLDYRA--VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKY 414 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~aE~~~~~~~--~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~ 414 (510)
+|. ++++...+++.++...+|.-. .|+. +.=..-+.+++.+..++. +.++..||- -|.|+..+.++
T Consensus 375 IGp---~Ti~~~~~~i~~akTI~WNGPmGvFE~-----~~Fa~GT~~l~~aia~~~-~~~a~sIvG---GGDt~aAi~~~ 442 (481)
T PLN03034 375 IGP---DSVKTFNEALDTTQTVIWNGPMGVFEF-----EKFAVGTEAVAKKLAELS-GKGVTTIIG---GGDSVAAVEKV 442 (481)
T ss_pred cCH---HHHHHHHHHHhhCCEEEEECCcccccC-----CcchHHHHHHHHHHHHhh-cCCCeEEEc---CcHHHHHHHHc
Confidence 333 788999999999998877421 1221 000011334444433322 334555554 78899999887
Q ss_pred CCCCcEEEE
Q 010449 415 RPAVPILSV 423 (510)
Q Consensus 415 RP~~PIiav 423 (510)
-..--+-=+
T Consensus 443 g~~~~~shi 451 (481)
T PLN03034 443 GVADVMSHI 451 (481)
T ss_pred CCccceeEE
Confidence 665554444
No 146
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=80.04 E-value=21 Score=36.49 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=76.5
Q ss_pred hhcHHHHHhccCcCC-CCEEEEc------------CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--
Q 010449 192 EKDKEDILRWGVPNN-IDMIALS------------FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-- 256 (510)
Q Consensus 192 ~~D~~di~~~a~~~g-~d~I~~s------------fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-- 256 (510)
..|.....+.+.+.| +|+|=+. +-++.+.+.++-+.+++.- +..|++||=- .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHH
Confidence 344444446667788 9998552 2234455555555454432 6789999941 22344444442
Q ss_pred ---cCeeEE-----eCC-ccc-------CCC----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHH
Q 010449 257 ---TDSFMV-----ARG-DLG-------MEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEAT 316 (510)
Q Consensus 257 ---~DgI~I-----grg-DLg-------~e~----~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~ 316 (510)
+|+|.+ ++. |+- ... |....+...+.+-+..+..+.|+|....+. | ..
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---AE 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---HH
Confidence 488765 211 221 011 111122233333333444589998755433 2 34
Q ss_pred HHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 317 DVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 317 Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
|+..++..|+|++++..---. -| .+.+++.++.+.
T Consensus 248 da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~~ 282 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLEA 282 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHHH
Confidence 667778899999999743322 24 445555555444
No 147
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=79.92 E-value=96 Score=34.68 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEecC-HHHHh-----chHHHHhh-cCe-
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVV-----NFDDILRE-TDS- 259 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIEt-~~av~-----nldeI~~~-~Dg- 259 (510)
.++..++..|.+...+.|+|.|=+.| .-++.|.+.++.+....-.+..+.+..-. ..++. .++..+.. .|.
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 45777887776777889999998855 45777777776654321123444443311 11221 12333332 343
Q ss_pred -eEEeCCcccC----CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEecc
Q 010449 260 -FMVARGDLGM----EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 333 (510)
Q Consensus 260 -I~IgrgDLg~----e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~ 333 (510)
++++-.|+-. ....++....-++.++.++++|..+-+... ......+-+..-+.+++. +...|+|.+.|.
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~- 178 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGADWVVLC- 178 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHHHHHHHhCCCCeEEEc-
Confidence 3444444321 223456777778899999999998755221 111122233444556555 456799999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 010449 334 ESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 334 Eta~G~yP~~~V~~m~~i~~~a 355 (510)
+|.=..+|.++-++++.+++..
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 8888889999999998887765
No 148
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=79.79 E-value=27 Score=35.02 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecC--HHH--------HhchHHHHhh-
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEG--------VVNFDDILRE- 256 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt--~~a--------v~nldeI~~~- 256 (510)
|..+..|.+.+.+.+.+.|++.|+++. --+..++.. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 344666777666888999999999983 233333322 2346778888843 221 1235555554
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChHhHHH-HHHHHHcCCceEEec
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESM-IKSPRPTRAEATD-VANAVLDGTDCVMLS 332 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM-~~~~~PtraEv~D-v~~av~~G~D~imLs 332 (510)
+|++-+-- ..+- .+..+....-+++.+.|+++|.|+++- ++-. .+.+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~~-~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 104 ADAVSIHV-NVGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred CCEEEEEE-ecCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 56555431 1221 122344467788999999999999871 1100 0011122334444 345677899999975
No 149
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=79.41 E-value=23 Score=34.50 Aligned_cols=128 Identities=10% Similarity=0.028 Sum_probs=62.7
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEec---------------CHHHHhchHHHHhh-cC
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE---------------NQEGVVNFDDILRE-TD 258 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIE---------------t~~av~nldeI~~~-~D 258 (510)
.+++ +..++.|+|.|++..-- .++...++++....+.+..+++ |. ..+.++.+..+.+. +|
T Consensus 85 ~e~~-~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 85 LEDI-ERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred HHHH-HHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 3445 44467899998876432 2333334444433333211121 11 11122233333333 68
Q ss_pred eeEEe-CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC
Q 010449 259 SFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA 337 (510)
Q Consensus 259 gI~Ig-rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~ 337 (510)
++++- +.--|..-+ .. .+.+-+.++....|++.+.. .-+.+ |+..+...|+|++|+..---.
T Consensus 162 ~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GG---------i~~~~---di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 162 AIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGG---------VSSLD---DIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred EEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecC---------CCCHH---HHHHHHHCCCCEEEEeHHHHc
Confidence 88775 222222222 12 12222334456899988654 34444 445555569999999765555
Q ss_pred CCCHH
Q 010449 338 GAYPE 342 (510)
Q Consensus 338 G~yP~ 342 (510)
|.++.
T Consensus 225 ~~~~~ 229 (234)
T cd04732 225 GKITL 229 (234)
T ss_pred CCCCH
Confidence 55543
No 150
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=79.38 E-value=17 Score=37.83 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=66.7
Q ss_pred HHHhccCcCCCCEEEEcCCCC-HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh-hcCeeEEeCCcccCCCCc-
Q 010449 197 DILRWGVPNNIDMIALSFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLGMEIPV- 273 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~s-a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~DgI~IgrgDLg~e~~~- 273 (510)
.+ ...++.++++|.++|=.- .+.++.+++ ..++++.++-|.+.... .++ -+|+|++--.+=|-+.+.
T Consensus 105 ~~-~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~eAGGH~g~~ 174 (330)
T PF03060_consen 105 QL-DVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVREARK---AAKAGADAIVAQGPEAGGHRGFE 174 (330)
T ss_dssp HH-HHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHH---HHHTT-SEEEEE-TTSSEE---S
T ss_pred cc-ccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHHHHH---hhhcCCCEEEEeccccCCCCCcc
Confidence 44 566788999999998877 555555543 35899999988776543 333 389988764444444441
Q ss_pred -hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 274 -EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 274 -~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+....+..++.+. ..+|||.|.-+- .-.+++.++..|+|++.+.
T Consensus 175 ~~~~~~L~~~v~~~---~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 175 VGSTFSLLPQVRDA---VDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp SG-HHHHHHHHHHH----SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred ccceeeHHHHHhhh---cCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 1244444444443 349999987764 3567899999999999985
No 151
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=79.28 E-value=33 Score=35.38 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=85.2
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHh--------------------------------------------ccCCCCc
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVL--------------------------------------------GPHAKNI 235 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l--------------------------------------------~~~~~~~ 235 (510)
..+++.|+|+|.+. ++|+..++++= .++|...
T Consensus 22 t~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G~~~ 97 (376)
T COG1465 22 TAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRGHEV 97 (376)
T ss_pred HHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcCcce
Confidence 77889999988865 46777776631 1234456
Q ss_pred eEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhH
Q 010449 236 QLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 236 ~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv 315 (510)
.....|.+.+--+-..++...+|.+++---|..+ +|++++.. -.++.+--++|. .-+-+|.
T Consensus 98 ~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA--------~l~~e~~kliA~----------V~saeEA 158 (376)
T COG1465 98 AAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA--------DLQHEKVKLIAG----------VKSAEEA 158 (376)
T ss_pred EEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH--------HhhccceEEEEE----------eccHHHH
Confidence 6888999988888888888888987776555543 56665321 112223334432 3445566
Q ss_pred HHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 316 TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 316 ~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
.=-...+..|+|+++|.++ .| +-++-..++.+++|+
T Consensus 159 ~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 159 RVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 6667799999999999866 34 445666777777774
No 152
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.22 E-value=19 Score=34.33 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=70.1
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccC-------CCC
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM-------EIP 272 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~-------e~~ 272 (510)
+.+.+.|+|+|.++.-. .....++.... ....+-+.+-|.+-+ ......-+|.|.+++-.=+. ..+
T Consensus 75 ~~a~~~gad~vh~~~~~--~~~~~~~~~~~---~~~~~g~~~~t~~e~--~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g 147 (212)
T PRK00043 75 DLALAVGADGVHLGQDD--LPVADARALLG---PDAIIGLSTHTLEEA--AAALAAGADYVGVGPIFPTPTKKDAKAPQG 147 (212)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHHcC---CCCEEEEeCCCHHHH--HHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence 44577899999887532 22344444322 223333333332222 11112237999987432222 112
Q ss_pred chhHHHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHH
Q 010449 273 VEKIFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 351 (510)
Q Consensus 273 ~~~v~~~qk~ii~~~~~~g-kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i 351 (510)
++.+..+ . .... .|++.+.-+ +. .++..+...|+|++.+.+.-..-..|.++++.+.+.
T Consensus 148 ~~~~~~~----~---~~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 148 LEGLREI----R---AAVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred HHHHHHH----H---HhcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 2232222 2 2223 888775442 21 456777888999999976555456798888888776
Q ss_pred HHHH
Q 010449 352 CIEA 355 (510)
Q Consensus 352 ~~~a 355 (510)
+.++
T Consensus 208 ~~~~ 211 (212)
T PRK00043 208 FRAA 211 (212)
T ss_pred Hhhc
Confidence 6543
No 153
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=79.20 E-value=74 Score=31.98 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=98.0
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEc-CCCCHHHHHHHHHHhccCCCCceEEEEe-cCHHHHhchHHHHhh--cCeeEE--
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALS-FVRKGSDLVNVRKVLGPHAKNIQLMSKV-ENQEGVVNFDDILRE--TDSFMV-- 262 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~s-fV~sa~dv~~vr~~l~~~~~~~~IiakI-Et~~av~nldeI~~~--~DgI~I-- 262 (510)
.++..++..+.+...+.|++.|=+- |+.+.++.+.++.+.+ ...+..+.+.+ -+.++++.+-+-... .|.|-+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~-~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~ 94 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAR-EVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFI 94 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH-hCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEe
Confidence 3567777777677788999998764 4447878766665543 23456666666 234444333221100 354443
Q ss_pred eCCccc----CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCCCC
Q 010449 263 ARGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGESAA 337 (510)
Q Consensus 263 grgDLg----~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Eta~ 337 (510)
+-.|.- ...+.++....-+..++.|+++|..+.+. ....++-+.+.+.+++.. ...|+|.|.|. +|.=
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G 167 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVVEAAIEAGATTINIP-DTVG 167 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCC
Confidence 222211 11222344455568888999999876642 123445567777777664 55799999997 7777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 010449 338 GAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~a 355 (510)
..+|.+.-+.++.+-+..
T Consensus 168 ~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 168 YLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 789999988888875543
No 154
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.18 E-value=52 Score=34.56 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=91.4
Q ss_pred CChhcHHHHHhccCcCCCCEEEE---------cCC------CCHHHHHHHHHHhccCCCCceEEEEec----CHHHHhch
Q 010449 190 LTEKDKEDILRWGVPNNIDMIAL---------SFV------RKGSDLVNVRKVLGPHAKNIQLMSKVE----NQEGVVNF 250 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~---------sfV------~sa~dv~~vr~~l~~~~~~~~IiakIE----t~~av~nl 250 (510)
++..++..+.+...+.|+|.|=+ ||. ...+.++.+++.+ ++.++.+.+- +.+. +
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~d---l 94 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV----KQAKIAALLLPGIGTVDD---L 94 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC----CCCEEEEEeccCcccHHH---H
Confidence 57777777767777899999877 332 2233344443332 3455555442 3322 2
Q ss_pred HHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCce
Q 010449 251 DDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDC 328 (510)
Q Consensus 251 deI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~ 328 (510)
+.-.+. .|.|-|+ . ...+. ..-++.++.++++|.-+.+. +. ..+..+.+++.+.+.. ...|+|+
T Consensus 95 ~~a~~~gvd~iri~-----~--~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 95 KMAYDAGVRVVRVA-----T--HCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred HHHHHcCCCEEEEE-----E--ecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCE
Confidence 222222 4766654 1 22222 24588999999999887653 22 2246688888888874 5569999
Q ss_pred EEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 329 VMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 329 imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
+.+. +|+=..+|.++-+.++.+-++.
T Consensus 161 i~i~-DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 161 VYVV-DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred EEeC-CCCCCCCHHHHHHHHHHHHHhc
Confidence 9887 8888889999888888876554
No 155
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=78.91 E-value=77 Score=32.05 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=93.9
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHHhccCCCCceEEEEecC-HHHHh-----chHHHHhh-cCee
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSF-VRKGSDLVNVRKVLGPHAKNIQLMSKVEN-QEGVV-----NFDDILRE-TDSF 260 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~l~~~~~~~~IiakIEt-~~av~-----nldeI~~~-~DgI 260 (510)
.++..++..+.+...+.|+|.|=+-| .-++.++..++.+....-++..+.+..-. ..++. .++..++. .|.+
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i 95 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVV 95 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEE
Confidence 35777777776778889999997744 34677777776544322123444443311 11121 22333333 3544
Q ss_pred EEe--CCccc----CCCCchhHHHHHHHHHHHHHHcCCCeEEe-hhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEec
Q 010449 261 MVA--RGDLG----MEIPVEKIFLAQKMMIYKCNLVGKPVVTA-TQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 332 (510)
Q Consensus 261 ~Ig--rgDLg----~e~~~~~v~~~qk~ii~~~~~~gkpviva-TqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs 332 (510)
.+. ..|+- ...+.++.....++.++.++++|..+.+. +.+.+ .++-+...+.+++. +...|+|.+.|.
T Consensus 96 ~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 96 TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 442 22321 11233556666678999999999987652 22211 22223444555555 355699999886
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH
Q 010449 333 GESAAGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 333 ~Eta~G~yP~~~V~~m~~i~~~ 354 (510)
+|.=...|.+.-+.++.+.+.
T Consensus 172 -DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 172 -DTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred -cCCCCCCHHHHHHHHHHHHHh
Confidence 887788999988887776544
No 156
>PRK08227 autoinducer 2 aldolase; Validated
Probab=78.69 E-value=5.3 Score=40.61 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=83.2
Q ss_pred hccCcCCCCEEEEc-CCCCHHH---HHHHHHHhccCC-CCceEEEEecCHHH--HhchHHHHhhcCeeEEeCCcccCCC-
Q 010449 200 RWGVPNNIDMIALS-FVRKGSD---LVNVRKVLGPHA-KNIQLMSKVENQEG--VVNFDDILRETDSFMVARGDLGMEI- 271 (510)
Q Consensus 200 ~~a~~~g~d~I~~s-fV~sa~d---v~~vr~~l~~~~-~~~~IiakIEt~~a--v~nldeI~~~~DgI~IgrgDLg~e~- 271 (510)
+-|+.+|+|.|.+. |+-+..+ ++++.+...++. ..+.+++.. +.| +.+=.++++.+-.+ -.+||+++
T Consensus 101 eeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~--prG~~~~~~~~~ia~aaRi---aaELGADiV 175 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVT--AVGKDMVRDARYFSLATRI---AAEMGAQII 175 (264)
T ss_pred HHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEe--cCCCCcCchHHHHHHHHHH---HHHHcCCEE
Confidence 44677899988763 3334333 333333333332 356777733 444 33323333322111 13455443
Q ss_pred --CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 272 --PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR-PTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 272 --~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~-PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
++.. ...+++++.| ..||++|.- |. +++.=...+++++..|+-|+...=-...=..|...++.+
T Consensus 176 K~~y~~--~~f~~vv~a~---~vPVviaGG--------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al 242 (264)
T PRK08227 176 KTYYVE--EGFERITAGC---PVPIVIAGG--------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAV 242 (264)
T ss_pred ecCCCH--HHHHHHHHcC---CCcEEEeCC--------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHH
Confidence 2332 4566777755 579999854 22 445556888999999999999876666668899999999
Q ss_pred HHHHHH
Q 010449 349 RRICIE 354 (510)
Q Consensus 349 ~~i~~~ 354 (510)
+.|+++
T Consensus 243 ~~IVh~ 248 (264)
T PRK08227 243 HAVVHE 248 (264)
T ss_pred HHHHhC
Confidence 999865
No 157
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.55 E-value=22 Score=35.87 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcC-eeEE-eCCc-ccCCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETD-SFMV-ARGD-LGMEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~D-gI~I-grgD-Lg~e~~~~~v 276 (510)
+.+.+.|+|++++|.. ..++..++.+.+++.|-..-.+..=.| ..+.+..|++.+| .|++ ++.. =|..-. +
T Consensus 109 ~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~~~---~ 182 (256)
T TIGR00262 109 AKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGARNR---A 182 (256)
T ss_pred HHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCccc---C
Confidence 5567899999999976 457888888888877655433333334 3578899999988 3433 3321 122111 1
Q ss_pred HHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 277 FLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 277 ~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..-....++..++ .++|+++-. ..=|.. ++..+...|+|+++..
T Consensus 183 ~~~~~~~i~~lr~~~~~pi~vgf---------GI~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 183 ASALNELVKRLKAYSAKPVLVGF---------GISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ChhHHHHHHHHHhhcCCCEEEeC---------CCCCHH---HHHHHHHcCCCEEEEC
Confidence 1122333334443 467877632 222333 5566777899999886
No 158
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=77.70 E-value=48 Score=30.71 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=55.2
Q ss_pred ChHhHHHHHHHHHcCCceEEeccCCCCCCC----HHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHH
Q 010449 311 TRAEATDVANAVLDGTDCVMLSGESAAGAY----PEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSA 386 (510)
Q Consensus 311 traEv~Dv~~av~~G~D~imLs~Eta~G~y----P~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a 386 (510)
|+.-+..+..|...|+|++++..- .+.. +.+.++..+.++.+++..+.. + ....|...-..+.+ ..+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~pv---~---iy~~p~~~~~~~~~-~~~ 134 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLPL---K---VILETRGLKTADEI-AKA 134 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCceE---E---EEEECCCCCCHHHH-HHH
Confidence 455566777889999999999532 1111 356677777877765211100 0 00011111022333 334
Q ss_pred HHHHHhcCCcEEEEEcC------CchHHHHHHhh-CCCCcEEEE
Q 010449 387 VRTANKARAKLIVVLTR------GGTTAKLVAKY-RPAVPILSV 423 (510)
Q Consensus 387 v~~A~~~~a~aIvv~T~------sG~tA~~iSr~-RP~~PIiav 423 (510)
++++...++++|=..+. +-...+.+.+. .+++||+++
T Consensus 135 ~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 135 ARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred HHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 56667789997655443 11223334333 337899888
No 159
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.59 E-value=70 Score=30.86 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=74.3
Q ss_pred ChhcHHHHHhccCcCCCCEEEEc-----CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhc---hHHHHhh-cCeeE
Q 010449 191 TEKDKEDILRWGVPNNIDMIALS-----FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVN---FDDILRE-TDSFM 261 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~s-----fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~n---ldeI~~~-~DgI~ 261 (510)
+..|..++.+...+.|++++.+. |-.+.++++.+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 33455555466678899999773 456888999998875 4566654 23322 3444443 79999
Q ss_pred EeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 262 VARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 262 IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
++--|+. . ..-++++..+...|..+++.+. +-.| +..+...|+|.+..++.
T Consensus 100 l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~e---~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 100 LIVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEEE---LERALALGAKIIGINNR 150 (217)
T ss_pred EeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHHH---HHHHHHcCCCEEEEeCC
Confidence 8755543 1 3446777788888998866542 3333 56677789999998843
No 160
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=77.47 E-value=10 Score=40.77 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=81.6
Q ss_pred ChhcHHHHHhccCcCCCCEEEE--cCCCCHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhhcCeeEEeCCcc
Q 010449 191 TEKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRETDSFMVARGDL 267 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~~DgI~IgrgDL 267 (510)
-+.|+..+ ....+.|+|+|++ |.=+|--+++.+ +++++.-+++.||+- .=|.+=.+|| |.+-+||+=||=|-=
T Consensus 249 re~dK~rl-~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 249 RDDDKERL-DLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSG 324 (503)
T ss_pred ccchhHHH-HHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccC
Confidence 35667777 6778899999887 444555555554 566666677777653 3333333333 445589999886554
Q ss_pred cCCCCchh--H----HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 268 GMEIPVEK--I----FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 268 g~e~~~~~--v----~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
++-+..+. + ..+--++.+.|+..|.|||--.- -.-+.+++.|+..|++.+|+.
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG------------iq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG------------IQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC------------cCccchhHhhhhcCchhheec
Confidence 43333221 1 12334778889999999985322 234678899999999999984
No 161
>PLN02282 phosphoglycerate kinase
Probab=76.90 E-value=31 Score=37.16 Aligned_cols=310 Identities=16% Similarity=0.178 Sum_probs=154.3
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHH-H---HHHHHHHHHHHHHhcCCcEEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHE-Y---QQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEIT 110 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~-~---~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~ 110 (510)
...|+.|++.|..+.- +||-... . ...+-.-.+...+.++++|...-|.-||+.+- .+ -.|+.|+.+.
T Consensus 46 lpTI~~l~~~gakvVl--~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~-~i-----~~l~~G~ilL 117 (401)
T PLN02282 46 VPTIKYLMGHGARVIL--CSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEK-LV-----AELPEGGVLL 117 (401)
T ss_pred HHHHHHHHHCCCeEEE--EecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHH-HH-----hcCCCCCEEE
Confidence 4589999999998655 6884422 1 11222223334556789998888999988773 11 1456676666
Q ss_pred EEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCcccCCccccCCCC
Q 010449 111 VSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTL 190 (510)
Q Consensus 111 l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~vnlp~~~~~lp~l 190 (510)
|-.---..+++ -|.++|.+.+...--||+.|.-= +- ++..-++ -+. |
T Consensus 118 LEN~RF~~~E~----~~~~~~a~~LA~l~DvyVNDAFg---~a--HR~haS~------------------~gi----~-- 164 (401)
T PLN02282 118 LENVRFYKEEE----KNDPEFAKKLASLADVYVNDAFG---TA--HRAHAST------------------EGV----A-- 164 (401)
T ss_pred EeccccCcccc----cCHHHHHHHHHHhCcEeeechhh---hh--hhcccch------------------hhh----h--
Confidence 54320001111 13446777776654588888321 10 1011000 000 0
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC-CceEE--EEecCHHHHhchHHHHhhcCeeEEeCC--
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLM--SKVENQEGVVNFDDILRETDSFMVARG-- 265 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~-~~~Ii--akIEt~~av~nldeI~~~~DgI~Igrg-- 265 (510)
++.-..-+-++ =..++..+.+.+..-.. -+.|+ ||+.+.-++ ++.++..+|.+++|-|
T Consensus 165 ---------~~l~~~~aG~l------mekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~kvD~lliGG~ma 227 (401)
T PLN02282 165 ---------KYLKPSVAGFL------MQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGV--IESLLEKVDILLLGGGMI 227 (401)
T ss_pred ---------hhcCccccchH------HHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHH--HHHHHHhhhhheeccHHH
Confidence 01000000001 12356666665543211 12222 577776666 7788888999999831
Q ss_pred -----cccCCCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChHhHHHHHHHHHcCCceEEeccCC
Q 010449 266 -----DLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVTATQMLESM-IKSPRPTRAEATDVANAVLDGTDCVMLSGES 335 (510)
Q Consensus 266 -----DLg~e~~~----~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM-~~~~~PtraEv~Dv~~av~~G~D~imLs~Et 335 (510)
-.|.++|. ++....-++|++.+++.|+.+++-.-..-+= .....+ + .+.++ +.+-+ |...|.
T Consensus 228 ~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~-~-~~~~~-~~ip~--~~~~lD--- 299 (401)
T PLN02282 228 FTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDAN-S-KVVPA-SAIPD--GWMGLD--- 299 (401)
T ss_pred HHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCC-e-EEeeh-hcCCC--CCeeec---
Confidence 13555554 3444455689999999988766422111000 000000 0 11111 11111 122222
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccchHH--HHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHh
Q 010449 336 AAGAYPEIAVKIMRRICIEAESSLDYRA--VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAK 413 (510)
Q Consensus 336 a~G~yP~~~V~~m~~i~~~aE~~~~~~~--~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr 413 (510)
+| -++++...+++..+...+|.-. .|+. +.=..-+.+++.+..++. +.+|..||- -|.|+..+.+
T Consensus 300 -IG---p~Ti~~~~~~i~~aktI~wNGP~GvfE~-----~~F~~GT~~l~~aia~~t-~~~a~sivG---GGdt~aA~~~ 366 (401)
T PLN02282 300 -IG---PDSIKTFSEALDTTKTIIWNGPMGVFEF-----EKFAAGTEAIAKKLAELS-GKGVTTIIG---GGDSVAAVEK 366 (401)
T ss_pred -cC---HHHHHHHHHHHhhCCEEEEECCcCCccC-----cchhHHHHHHHHHHHHhh-cCCCEEEEe---CcHHHHHHHH
Confidence 22 2678888999999998877421 1210 000011234444433322 244555555 6899999988
Q ss_pred hCCCCcEEEE
Q 010449 414 YRPAVPILSV 423 (510)
Q Consensus 414 ~RP~~PIiav 423 (510)
+--.-.+--+
T Consensus 367 ~g~~~~~shv 376 (401)
T PLN02282 367 VGLADKMSHI 376 (401)
T ss_pred cCCcCCceEE
Confidence 7544444444
No 162
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.18 E-value=21 Score=35.85 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 217 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 217 sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
+.++..++.+++++. ++..++-.=..++++-++++ -.+.+=|+-+||.- -.+++.+.+.|||+|+
T Consensus 54 ~~e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n-----------~~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 54 SEEQHKELFEYCKEL--GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTN-----------LPLLEYIAKTGKPVIL 118 (241)
T ss_dssp -HHHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT------------HHHHHHHHTT-S-EEE
T ss_pred CHHHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHc--CCCEEEeccccccC-----------HHHHHHHHHhCCcEEE
Confidence 344555555555443 24444444444444444332 26788888888852 2356677889999999
Q ss_pred ehhhhHhhhcCCCCChHhHHHHHHHH-HcCCceEEeccCCCCCCCHH
Q 010449 297 ATQMLESMIKSPRPTRAEATDVANAV-LDGTDCVMLSGESAAGAYPE 342 (510)
Q Consensus 297 aTqmLeSM~~~~~PtraEv~Dv~~av-~~G~D~imLs~Eta~G~yP~ 342 (510)
+|-| -|-+|+.+..+.+ ..|.+-+.|-.= +..||.
T Consensus 119 STG~---------stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 119 STGM---------STLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp E-TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred ECCC---------CCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 9885 4678999988888 666666555332 336774
No 163
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.09 E-value=35 Score=32.68 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=69.5
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEE--EEecCHHHHhchHHHHhhcCeeEEeCC---c--
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLM--SKVENQEGVVNFDDILRETDSFMVARG---D-- 266 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Ii--akIEt~~av~nldeI~~~~DgI~Igrg---D-- 266 (510)
+.+.+.+.+.+.++|+|-+..-++.+.++.+++.+. ..+| ..+-+....+...+.-..+|++++.-. +
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~~-----~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~G 135 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDESPEYCAQLRARLG-----LPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGG 135 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcC-----CcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCC
Confidence 444444667788999999998888888888887652 2233 445444333322233334799988632 2
Q ss_pred -ccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcC-CceEEecc--CCCCC
Q 010449 267 -LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG-TDCVMLSG--ESAAG 338 (510)
Q Consensus 267 -Lg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G-~D~imLs~--Eta~G 338 (510)
-|...+++.+..+. ..+|++.|.-+ | ...+..++..| +|++-+++ |++-|
T Consensus 136 g~g~~~~~~~l~~~~---------~~~PvilaGGI----------~---~~Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 136 GTGKTFDWSLLRGLA---------SRKPVILAGGL----------T---PDNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CCcceEChHHhhccc---------cCCCEEEECCC----------C---hHHHHHHHHhcCCCEEEcCCcccCCCC
Confidence 13444544433221 46899988653 1 23346666667 88877754 44446
No 164
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=75.88 E-value=47 Score=32.80 Aligned_cols=150 Identities=16% Similarity=0.103 Sum_probs=88.4
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-----cCeeEE
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMV 262 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~DgI~I 262 (510)
|..|+.|.+.+.+.|.+.|+..|+++ +..+..+++.|. |..+++.+=|--|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 67899998888788999999999987 778999999884 4568888888777776544333221 122100
Q ss_pred eCCcccCCCCc---hhHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCCC
Q 010449 263 ARGDLGMEIPV---EKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAA 337 (510)
Q Consensus 263 grgDLg~e~~~---~~v~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~ 337 (510)
=|+-+.++. .++..+.++|...... .++++=+ +.+.+.-+..|+.++.. ++..|+|.|--|.=-..
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv-------IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV-------IIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE-------EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 012222221 1334444444333332 3444311 12455667788888877 77889995544311111
Q ss_pred CCCHHHHHHHHHHHH
Q 010449 338 GAYPEIAVKIMRRIC 352 (510)
Q Consensus 338 G~yP~~~V~~m~~i~ 352 (510)
|.--.+.|+.|++.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 223467777777654
No 165
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=75.74 E-value=44 Score=38.45 Aligned_cols=154 Identities=13% Similarity=0.145 Sum_probs=96.5
Q ss_pred hhcHHHHHhccCcCCCCEEEE--cCCCCHHHHHHHHHHhccCCCCceEEEEecC--HHHHhchHHHHhhcCeeEEeCCcc
Q 010449 192 EKDKEDILRWGVPNNIDMIAL--SFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEGVVNFDDILRETDSFMVARGDL 267 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~--sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt--~~av~nldeI~~~~DgI~IgrgDL 267 (510)
+...+.+ ....+.|++.|-+ |-.+.|+.+..+++.|...|.++.++|-|-- .-|+ +-++.+|.|=|-||.+
T Consensus 110 eatv~Qi-~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~ 184 (733)
T PLN02925 110 EATVDQV-MRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNF 184 (733)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH----HHHHhcCCeEECCccc
Confidence 3344455 4567789998654 5555666666677777777889999999943 3333 2333489999999999
Q ss_pred cCCC---------------CchhHHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChH-h----HHHHHH
Q 010449 268 GMEI---------------PVEKIFLAQKMMIYKCNLVGKPVVTATQ-------MLESMIKSPRPTRA-E----ATDVAN 320 (510)
Q Consensus 268 g~e~---------------~~~~v~~~qk~ii~~~~~~gkpvivaTq-------mLeSM~~~~~Ptra-E----v~Dv~~ 320 (510)
+-.- .++++.+--..++.+|+++|+|+=+=|+ +|+.- -+|.. - ..-+.-
T Consensus 185 ~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~y----Gdtp~gmVeSAle~~~i 260 (733)
T PLN02925 185 ADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY----GDSPRGMVESAFEFARI 260 (733)
T ss_pred CCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHH
Confidence 8762 1124444445799999999999844332 22211 11211 1 122233
Q ss_pred HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 321 AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 321 av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
+-..|++=+++|--.+ .|...|...+.+..+.++
T Consensus 261 ~e~~~f~diviS~KsS---n~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 261 CRKLDYHNFVFSMKAS---NPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred HHHCCCCcEEEEEEcC---ChHHHHHHHHHHHHHHHh
Confidence 5678999999986554 566666666666665443
No 166
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.70 E-value=37 Score=33.84 Aligned_cols=131 Identities=8% Similarity=0.066 Sum_probs=78.2
Q ss_pred HHHhccCcCCCCEEEEcCCC----------CHHHHHHHHHHhccCCCCceEEEE-------e---c---CHHHHhchHHH
Q 010449 197 DILRWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKNIQLMSK-------V---E---NQEGVVNFDDI 253 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~----------sa~dv~~vr~~l~~~~~~~~Iiak-------I---E---t~~av~nldeI 253 (510)
.+ +++.++|+|+|=+++.. +.+++.++++.+.+.|-.+.-++- + + ..++++.+...
T Consensus 21 ~~-~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 21 RL-VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HH-HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 44 67789999999887543 467899999999887744332210 1 1 12356666666
Q ss_pred Hhh-----cCeeEEeCCcccCCC----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc
Q 010449 254 LRE-----TDSFMVARGDLGMEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 324 (510)
Q Consensus 254 ~~~-----~DgI~IgrgDLg~e~----~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~ 324 (510)
++. ++.|.+..++...+- .++.+....+++...+.++|..+.+ |.|-..-.++.++..++..++
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v-- 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI-- 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc--
Confidence 664 356666533321111 1234445556777788888876553 444334466777777777766
Q ss_pred CCceEEeccCC
Q 010449 325 GTDCVMLSGES 335 (510)
Q Consensus 325 G~D~imLs~Et 335 (510)
+.+.+-+.-++
T Consensus 173 ~~~~~~~~~D~ 183 (284)
T PRK13210 173 DSPWLTVYPDV 183 (284)
T ss_pred CCCceeEEecC
Confidence 34555555454
No 167
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.22 E-value=5.6 Score=41.49 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAA 71 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~ 71 (510)
-+-+.+|+.....+.++.++++|++++=+|++||..+.+.++++.+|+.
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3455667655668899999999999999999999998877888888763
No 168
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=75.13 E-value=68 Score=32.35 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|.+|.--...|-..|+.+ +...+.+.+. .+.|||+.- ..=|. +|++.++..|+|++++..=-+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~eg---------GI~tp---eda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEEEChHhc
Confidence 5777653244444455545 4555555433 478998743 23333 577889999999999988888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010449 337 AGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~ 354 (510)
.++.|..-.+.+..-++.
T Consensus 209 ~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 209 KAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 888998877777665544
No 169
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.82 E-value=45 Score=33.65 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=74.5
Q ss_pred cHHHHHhccCcCCCCEEEE-----cCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHh---chHHHHhh-cCeeEEeC
Q 010449 194 DKEDILRWGVPNNIDMIAL-----SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVV---NFDDILRE-TDSFMVAR 264 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~-----sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~---nldeI~~~-~DgI~Igr 264 (510)
|..++.+...+.|++.|.+ -|-.+.+++..+++.. +++|+.| +=+- .+++.... +|+|.+.-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 4445545557789999988 6778999999999865 4566643 2222 23333333 69999876
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 265 GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 265 gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
.+|. +.--++++..|+..|.-+++-++ +.+|+ ..|...|+|.+.+++.
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~---~~A~~~gadiIgin~r 189 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL---ERALKLGAPLIGINNR 189 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH---HHHHHcCCCEEEECCC
Confidence 6653 13567888999999999887432 33444 5577789999888643
No 170
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=73.98 E-value=1.1e+02 Score=31.23 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCCEEEEcCC------------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-----cCeeEEeC---C
Q 010449 206 NIDMIALSFV------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMVAR---G 265 (510)
Q Consensus 206 g~d~I~~sfV------------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~DgI~Igr---g 265 (510)
++|+|-+.+- .+++.+.++-+.+++. .+..|.+||-. .+++..++++. +|+|.+.- |
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~ 194 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRG 194 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCc
Confidence 3777766432 4556555555555433 25789999941 23344444442 58998741 1
Q ss_pred ---ccc-------CCC----CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 266 ---DLG-------MEI----PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 266 ---DLg-------~e~----~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
|+- ... |....+...+.+-+.....+.|+|....+. | ..|+..++..|+|++|+
T Consensus 195 ~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~---------s---~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 195 MKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT---------S---FEDALEFLMAGASAVQV 262 (300)
T ss_pred cccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHcCCCceee
Confidence 211 110 111223333444444455689988755433 2 34667788899999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 332 SGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 332 s~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
..-.- ..| .+.+++.++.++
T Consensus 263 gr~~l--~~p----~~~~~i~~~l~~ 282 (300)
T TIGR01037 263 GTAVY--YRG----FAFKKIIEGLIA 282 (300)
T ss_pred cHHHh--cCc----hHHHHHHHHHHH
Confidence 74322 335 344455555444
No 171
>PRK00208 thiG thiazole synthase; Reviewed
Probab=73.89 E-value=75 Score=32.08 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=53.7
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+|.||.--...|-..|+.+ +...+.+.+. .+.|||+.-. .=|. +|++.++..|+|++++.+=-+
T Consensus 145 ~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~---~~vpVIveaG---------I~tp---eda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ---ADVPVIVDAG---------IGTP---SDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---cCCeEEEeCC---------CCCH---HHHHHHHHcCCCEEEEChHhh
Confidence 5677652234444445544 4554544443 4789987432 3333 577899999999999988888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010449 337 AGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~ 354 (510)
..+.|..-.+.+..-++.
T Consensus 209 ka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 888998877776665544
No 172
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=73.86 E-value=11 Score=35.17 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCC-CcEEEE
Q 010449 377 SPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPA-VPILSV 423 (510)
Q Consensus 377 ~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr~RP~-~PIiav 423 (510)
...+..-.-|++.|.+++.+-|+|.+.||+||++++.+-|. ..++.+
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvV 57 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVV 57 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEE
Confidence 34577778899999999999999999999999999999987 788888
No 173
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=73.79 E-value=31 Score=32.67 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=66.5
Q ss_pred CChhcHHHHHhccCcCCCCEEEE--cCCCC--HHHHHHHHHHhccCCCCceEEE--EecCHHHHhchHHHHhh-cCeeEE
Q 010449 190 LTEKDKEDILRWGVPNNIDMIAL--SFVRK--GSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMV 262 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~--sfV~s--a~dv~~vr~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~DgI~I 262 (510)
.+..+...+.+...+. +++|=+ ||+.+ .+.++.+++.. .+..+++ |+.+.. -..+++..++ +|++.+
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~----~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~ 83 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAF----PDKIIVADLKTADAG-ALEAEMAFKAGADIVTV 83 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHC----CCCEEEEEEEecccc-HHHHHHHHhcCCCEEEE
Confidence 3555555663544444 888777 56432 34555555432 2455665 666542 1123555554 688887
Q ss_pred eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 263 ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 263 grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-- +..+..-+++++.|+++|++++++. |+.....++..+...|+|.+.+.
T Consensus 84 h~---------~~~~~~~~~~i~~~~~~g~~~~v~~-----------~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 84 LG---------AAPLSTIKKAVKAAKKYGKEVQVDL-----------IGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred Ee---------eCCHHHHHHHHHHHHHcCCeEEEEE-----------eCCCCHHHHHHHHHCCCCEEEEc
Confidence 41 1112345778899999999998631 21122233345777899998883
No 174
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=73.52 E-value=24 Score=37.02 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=89.8
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCch
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVE 274 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~ 274 (510)
.+.| ....+.|+|.|-+. |.+.++++.++++.+ +.+++++|-|-- +--..+.++.+-+|.+=|.||.+|-
T Consensus 37 v~QI-~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~----- 106 (346)
T TIGR00612 37 VAQI-RALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF----- 106 (346)
T ss_pred HHHH-HHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC-----
Confidence 3444 34567899988776 567777777777654 457999999944 1223355666678999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCCe--EEehhhhHh--hhcCCCCChHhH-----HHHHHHHHcCCceEEeccCCCCCCCHHHHH
Q 010449 275 KIFLAQKMMIYKCNLVGKPV--VTATQMLES--MIKSPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAV 345 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~gkpv--ivaTqmLeS--M~~~~~PtraEv-----~Dv~~av~~G~D~imLs~Eta~G~yP~~~V 345 (510)
.+--+.++++|+++|+|+ ++=.-=|+. |.+...||..-+ ..+.-+-..|++=+.+|--++ .+..++
T Consensus 107 --~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsS---dv~~~i 181 (346)
T TIGR00612 107 --RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKAS---DVAETV 181 (346)
T ss_pred --HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHHHH
Confidence 356678999999999997 332222221 112233554322 223335567888888875544 344444
Q ss_pred HHHHHH
Q 010449 346 KIMRRI 351 (510)
Q Consensus 346 ~~m~~i 351 (510)
+.-+.+
T Consensus 182 ~ayr~l 187 (346)
T TIGR00612 182 AAYRLL 187 (346)
T ss_pred HHHHHH
Confidence 443333
No 175
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=73.14 E-value=29 Score=33.23 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=62.7
Q ss_pred cHHHHHhccCcCCCCEEEEcCCC-CHHHH-----HHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVR-KGSDL-----VNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARG 265 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~-sa~dv-----~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~Igrg 265 (510)
+.+++ +.+.+.|+|+|.+=|.. |+..+ +++++.+. .++.-++-+-+. -++.+.+++.. .|+|-++-.
T Consensus 8 ~~ed~-~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~---~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 8 TLEDA-LAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP---PFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CHHHH-HHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC---CCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCC
Confidence 45677 77889999999998854 45544 44444443 223334444332 24555566654 489988743
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
| +.+.+..++ +..|.+++-+-. ..+.. -.+...+...|+|.+++...|.
T Consensus 83 e-----~~~~~~~l~-------~~~~~~~i~~i~---------~~~~~-~~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 83 E-----SPEYCAQLR-------ARLGLPVIKAIR---------VKDEE-DLEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred C-----CHHHHHHHH-------hhcCCcEEEEEe---------cCChh-hHHHhhhccccCCEEEEcCCCC
Confidence 3 222222221 223777763211 11111 1222456668999999855443
No 176
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=73.13 E-value=1.1e+02 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010449 382 LASSAVRTANKA-----RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 423 (510)
Q Consensus 382 ia~~av~~A~~~-----~a~aIvv~T~sG~tA~~iSr~----RP~~PIiav 423 (510)
....+.++.+++ ..+.||+.+-+|.|+--++++ .|.+.|+++
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv 217 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGI 217 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 333444666655 468999999999998766663 599999999
No 177
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.10 E-value=65 Score=32.03 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=52.9
Q ss_pred HHHHHhccCcCCCCEEEE--cC---CCCHHHHHHHH--------------HHhccCC--CCceEEEEec-CH---HHHhc
Q 010449 195 KEDILRWGVPNNIDMIAL--SF---VRKGSDLVNVR--------------KVLGPHA--KNIQLMSKVE-NQ---EGVVN 249 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~--sf---V~sa~dv~~vr--------------~~l~~~~--~~~~IiakIE-t~---~av~n 249 (510)
.+.+ +...+.|+|++-+ || +-+...|+.+- +.+++.. .+++++.+.. ++ .|+++
T Consensus 17 ~~~~-~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~ 95 (242)
T cd04724 17 LEIL-KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLER 95 (242)
T ss_pred HHHH-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHH
Confidence 3444 5556778998654 55 55555555422 1121111 2455666666 43 24455
Q ss_pred hHHHHh-h-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 250 FDDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 250 ldeI~~-~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
+-+-+. + +||+++. || +++ -.++++..|+++|...+.+
T Consensus 96 fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 96 FLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 433333 3 6999995 55 433 4578999999999877653
No 178
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=72.46 E-value=13 Score=37.50 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=51.4
Q ss_pred cCCCCEEEEcCCCC-----HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe-----CCcccCCCCc
Q 010449 204 PNNIDMIALSFVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA-----RGDLGMEIPV 273 (510)
Q Consensus 204 ~~g~d~I~~sfV~s-----a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig-----rgDLg~e~~~ 273 (510)
..++|+|++|--.+ .++++++|+.+. +.++ +=|=--.+|+.++++.+||++|| -|...-.+..
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-----~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~ 242 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAVP-----VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDP 242 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcCC-----CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCH
Confidence 46899999998774 555666666542 4444 33333458999999999999999 3777777777
Q ss_pred hhHHHHHHH
Q 010449 274 EKIFLAQKM 282 (510)
Q Consensus 274 ~~v~~~qk~ 282 (510)
+++....+.
T Consensus 243 ~Rv~~fm~~ 251 (254)
T PF03437_consen 243 ERVRRFMEA 251 (254)
T ss_pred HHHHHHHHH
Confidence 777666554
No 179
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=72.35 E-value=77 Score=32.10 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+++|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+. +.|
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~-~~~ 132 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPN-AFW 132 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCC-cEE
Confidence 4556899999999774 3444445556667778999887753311 1 236666766665543211 122
Q ss_pred HHHHHHHHhcCCCCCCchHHHH-HHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLA-SSAVRTANKAR--AKLIVVLTRGGTTAKL----VAKYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia-~~av~~A~~~~--a~aIvv~T~sG~tA~~----iSr~RP~~PIiav 423 (510)
...| ..|. ..+.-. ..+.++.++++ .+.||+.+-+|.++.- +..++|...|+++
T Consensus 133 ~~~~-------~~p~-~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V 193 (291)
T cd01561 133 LNQF-------ENPA-NPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV 193 (291)
T ss_pred ecCC-------CCch-HHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1101 1111 112222 44677777775 6999999999998654 4446799999999
No 180
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=72.32 E-value=28 Score=35.69 Aligned_cols=109 Identities=19% Similarity=0.175 Sum_probs=62.0
Q ss_pred hccCcCCCCEEEEcCCCC-------HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEe-CCcccCC
Q 010449 200 RWGVPNNIDMIALSFVRK-------GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA-RGDLGME 270 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~s-------a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~Ig-rgDLg~e 270 (510)
+.+.+.|+|.|.+.+=.. .+.++++++.+ +.+++.|.- ...+......+. +|+|.+. +| |..
T Consensus 136 ~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~~ 206 (299)
T cd02809 136 RRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GRQ 206 (299)
T ss_pred HHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CCC
Confidence 566678999888754222 25666666654 357888831 222333333333 6998884 22 222
Q ss_pred C--CchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 271 I--PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 271 ~--~~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
+ +...+ ..+.+.+... ..|+|.+.-+- -..|+..++..|||++|+..
T Consensus 207 ~~~g~~~~----~~l~~i~~~~~~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 207 LDGAPATI----DALPEIVAAVGGRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCcCHH----HHHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 2 22111 1111122222 48888765533 24688999999999999974
No 181
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.28 E-value=58 Score=31.97 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=63.2
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccC--------CCCch--hHHHH
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGM--------EIPVE--KIFLA 279 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~--------e~~~~--~v~~~ 279 (510)
|.+=...++++...+.+.+.+.|-+..=|. .-|+++++.+.++.+..+.++||-|=--. +.|.. -.|..
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~ 96 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL 96 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC
Confidence 444445677777777666665553322222 56777777777776655556666432111 11000 11233
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 280 QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 280 qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
-..+++.|++++.|.+=- .-|. +++..|...|+|.+=|
T Consensus 97 ~~~vi~~a~~~~i~~iPG-----------~~Tp---tEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPG-----------VSTP---SELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHcCCCEeCC-----------CCCH---HHHHHHHHCCCCEEEE
Confidence 458899999999998710 1223 3467889999999988
No 182
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=72.14 E-value=69 Score=32.64 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+...|+.+|.|+++. .|..+....+...-..|++-+...++ +.| .++.+...++.++-... +.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~-~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK-LL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC-CC
Confidence 3456799999999874 34444444556677789998877542 112 24455555554432221 11
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
..|. .+..+.--....+.++.++++ .+.||+.+-+|.|+.-+++ +.|...|+++
T Consensus 137 -~~~~-------~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 137 -DQFN-------NPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred -CccC-------CcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 111111112345667777774 6899999999998655444 6799999999
No 183
>PRK06381 threonine synthase; Validated
Probab=71.50 E-value=69 Score=32.92 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+++. .|.......+...-..|++.+...+ . .-++++...+.+++ +..++.
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----K-YEEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----C-HHHHHHHHHHHHHH-cCcEec
Confidence 4556889999999774 2333334445666779999888864 2 34677777776654 322111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhh----------CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAKY----------RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr~----------RP~~PIiav 423 (510)
. .....+....+.....+.++.++++ .+.||+.+-+|.|+.-++++ .|...|+++
T Consensus 139 -~------~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigV 205 (319)
T PRK06381 139 -N------PGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGV 205 (319)
T ss_pred -C------CCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEE
Confidence 0 0000111113345556677777775 69999999999997777763 588889998
No 184
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=71.49 E-value=29 Score=35.20 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=71.5
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCc-hhHHH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV-EKIFL 278 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~-~~v~~ 278 (510)
+.+.+.|+|++++|=.- .|+-.++++.+.+.| +.+|.-|=-...-+.+..|++.++|.+=.-+=.|+ .|. ..++.
T Consensus 109 ~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~~ 184 (259)
T PF00290_consen 109 KEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELPD 184 (259)
T ss_dssp HHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCHH
T ss_pred HHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccchH
Confidence 55678899999999764 466677777777654 55666665545667899999998877654333443 122 23445
Q ss_pred HHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 279 AQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 279 ~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-.+..++..+++ .+|+.+= -..=|++. +.... .|+||++..
T Consensus 185 ~l~~~i~~ik~~~~~Pv~vG---------FGI~~~e~---~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 185 ELKEFIKRIKKHTDLPVAVG---------FGISTPEQ---AKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHTTSS-EEEE---------SSS-SHHH---HHHHH-TTSSEEEES
T ss_pred HHHHHHHHHHhhcCcceEEe---------cCCCCHHH---HHHHH-ccCCEEEEC
Confidence 556666666765 5887652 22334443 33333 899999986
No 185
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.32 E-value=47 Score=36.06 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHHhccCcCCCCEEEEcC-CCCHHHHHHHHHH-h--ccCC---CCceEEEEecCHHHHhch---------HHHHh----
Q 010449 196 EDILRWGVPNNIDMIALSF-VRKGSDLVNVRKV-L--GPHA---KNIQLMSKVENQEGVVNF---------DDILR---- 255 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sf-V~sa~dv~~vr~~-l--~~~~---~~~~IiakIEt~~av~nl---------deI~~---- 255 (510)
..+ +..++.|+..|..|. ......+...|.. + ...+ ..-.|++|+-+++-.... +.+.+
T Consensus 86 ~~v-~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i 164 (418)
T cd04742 86 GLV-DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI 164 (418)
T ss_pred HHH-HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC
Confidence 345 677899999888874 3322233233221 0 0000 124599998775444211 22221
Q ss_pred ------------hcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHc--------CCCeEEehhhhHhhhcCCCCChHhH
Q 010449 256 ------------ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV--------GKPVVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 256 ------------~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~--------gkpvivaTqmLeSM~~~~~PtraEv 315 (510)
++|.|.+. +|=|-+.+.......--.|.+.+.+. ..|||.|.-+- .-
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~------------tg 231 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG------------TP 231 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC------------CH
Confidence 15888888 77777765322222222233332222 48998886644 34
Q ss_pred HHHHHHHHcCCceEEec
Q 010449 316 TDVANAVLDGTDCVMLS 332 (510)
Q Consensus 316 ~Dv~~av~~G~D~imLs 332 (510)
.+++.|...|+|++++.
T Consensus 232 ~~vaAA~alGAd~V~~G 248 (418)
T cd04742 232 EAAAAAFALGADFIVTG 248 (418)
T ss_pred HHHHHHHHcCCcEEeec
Confidence 57899999999999984
No 186
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=71.27 E-value=95 Score=29.41 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=72.2
Q ss_pred HHHHhccCcCCCCEEEE-----cCCCC-HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCccc
Q 010449 196 EDILRWGVPNNIDMIAL-----SFVRK-GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLG 268 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~-----sfV~s-a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg 268 (510)
+++ +.+.+.|+|.|-+ +|+.+ ....+.++++-......+.+..|....+ +-++.+.+. +||+.+--
T Consensus 15 ~~~-~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~---- 87 (210)
T TIGR01163 15 EEV-KAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP---- 87 (210)
T ss_pred HHH-HHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc----
Confidence 455 6677889999988 36543 3333333333322122233446666543 345666655 69988831
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc--CCCCC-CCHHHHH
Q 010449 269 MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPEIAV 345 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~--Eta~G-~yP~~~V 345 (510)
... ....+.++.++++|...++... +. |.. +...++..++|.+.+.+ .+..| .++...+
T Consensus 88 ---~~~---~~~~~~~~~~~~~g~~~~~~~~--------~~-t~~---e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 88 ---EAS---EHIHRLLQLIKDLGAKAGIVLN--------PA-TPL---EFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---CCc---hhHHHHHHHHHHcCCcEEEEEC--------CC-CCH---HHHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 111 1225666888999988776421 11 222 22445567899987732 12233 5666666
Q ss_pred HHHHHHH
Q 010449 346 KIMRRIC 352 (510)
Q Consensus 346 ~~m~~i~ 352 (510)
+.++++.
T Consensus 150 ~~i~~i~ 156 (210)
T TIGR01163 150 EKIREVR 156 (210)
T ss_pred HHHHHHH
Confidence 6666654
No 187
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=70.40 E-value=62 Score=29.94 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=64.3
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh-hcCeeEEeCCc---cc----CCC
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGD---LG----MEI 271 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~DgI~IgrgD---Lg----~e~ 271 (510)
+.+.+.|+|++.++.-.. ....+++... ....+-+-+.|.+-+ .+..+ -+|.+++++.. -. ...
T Consensus 66 ~~a~~~g~~~vh~~~~~~--~~~~~~~~~~---~~~~~g~~~~t~~~~---~~~~~~g~d~i~~~~~~~~~~~~~~~~~~ 137 (196)
T cd00564 66 DLALAVGADGVHLGQDDL--PVAEARALLG---PDLIIGVSTHSLEEA---LRAEELGADYVGFGPVFPTPTKPGAGPPL 137 (196)
T ss_pred HHHHHcCCCEEecCcccC--CHHHHHHHcC---CCCEEEeeCCCHHHH---HHHhhcCCCEEEECCccCCCCCCCCCCCC
Confidence 345678999998885332 3344444332 233444444554332 23333 37999987532 11 122
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 272 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 272 ~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
+++.+..+ +.....|++.+..+ +.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 138 ~~~~~~~~-------~~~~~~pv~a~GGi----------~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 138 GLELLREI-------AELVEIPVVAIGGI----------TPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CHHHHHHH-------HHhCCCCEEEECCC----------CHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 32333222 22257898876542 222 45556667999999875443334466666544
No 188
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=70.36 E-value=1.1e+02 Score=32.00 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=89.1
Q ss_pred CCChhcHHHHHhccCcCCCCEEEE---------cC------CCCHHHHHHHHHHhccCCCCceEEEEe----cCHHHHhc
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIAL---------SF------VRKGSDLVNVRKVLGPHAKNIQLMSKV----ENQEGVVN 249 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~---------sf------V~sa~dv~~vr~~l~~~~~~~~IiakI----Et~~av~n 249 (510)
.++..++..|.+...+.|+|.|=+ || ....++++++++.+ ++.++.+.+ -+.+.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~dl-- 93 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV----KRAKVAVLLLPGIGTVHDL-- 93 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC----CCCEEEEEeccCccCHHHH--
Confidence 357778888867777799999866 22 23345555555443 234444444 233332
Q ss_pred hHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCc
Q 010449 250 FDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTD 327 (510)
Q Consensus 250 ldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D 327 (510)
+.-.+. .|.|-|+= ...+.. .-++.++.+++.|..+.+. ++.+ ..=+..++.+.+.. ...|+|
T Consensus 94 -~~a~~~gvd~iri~~-------~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 94 -KAAYDAGARTVRVAT-------HCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred -HHHHHCCCCEEEEEe-------ccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcCCC
Confidence 222222 46666541 222222 3468899999999887642 2222 23455677777765 456999
Q ss_pred eEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 328 CVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 328 ~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
+|.+. +|+=..+|.+.-+....+.++.
T Consensus 159 ~i~i~-DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 159 CVYIV-DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred EEEEc-cCCCCCCHHHHHHHHHHHHHhC
Confidence 99997 8888889999888877776544
No 189
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=70.12 E-value=6.1 Score=41.48 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAG--MNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G--~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
.+.+++|-...+.|.+++|+++| .|+.=|+.+||..+...+.|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 34558899889999999999996 9999999999999998888888887
No 190
>PRK12483 threonine dehydratase; Reviewed
Probab=70.09 E-value=79 Score=35.35 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=92.1
Q ss_pred ceEEEEecCHHHHhchHH------HHhh-----cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 010449 235 IQLMSKVENQEGVVNFDD------ILRE-----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLES 303 (510)
Q Consensus 235 ~~IiakIEt~~av~nlde------I~~~-----~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeS 303 (510)
..|+.|.|+.+-.-.+.. |... ..||+-+ +-| . .=.-+..+|+..|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG--N---ha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG--N---HAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC--H---HHHHHHHHHHHhCCCEEEE------
Confidence 368999998765533322 2111 2454433 222 1 1224566899999999764
Q ss_pred hhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHH
Q 010449 304 MIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLA 383 (510)
Q Consensus 304 M~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia 383 (510)
.|..+....+...-..|++.++. |...-++++...+++++ +.. .|-..|. .| .....-.
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~-~~v~pfd-------d~-~viaGqg 173 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGL-TFVPPFD-------DP-DVIAGQG 173 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCC-eeeCCCC-------Ch-HHHHHHH
Confidence 35555556677777899986653 33456777777776544 222 1111111 11 1222234
Q ss_pred HHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 384 SSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 384 ~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
.-+.++.++++ .+.||+..-+|.++.-+++ ++|.+.|+++
T Consensus 174 Tig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 174 TVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred HHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 45677777774 7999999999998766665 4799999999
No 191
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=69.69 E-value=49 Score=33.65 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCH-HHHHHHHHHHHHHHhcccc
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYP-EIAVKIMRRICIEAESSLD 360 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP-~~~V~~m~~i~~~aE~~~~ 360 (510)
.+...|+.+|.|+.+. .|....-..+...-..|++.+...+ .|. .++++...++..+-...+.
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCcEE
Confidence 3455789999999764 2433333335556678999886643 343 4566665555433211111
Q ss_pred hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 361 YRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
+...| ..+..+..-....+.++..+++ .+.||+.+-+|.++.-++ .++|...|+++
T Consensus 135 ~~~~~-------~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~V 196 (298)
T TIGR01139 135 MLQQF-------ENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAV 196 (298)
T ss_pred ccccc-------CCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEE
Confidence 11111 1121111122334556666664 799999999998865544 46799999999
No 192
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=69.44 E-value=83 Score=32.35 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHH-cC
Q 010449 214 FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL-VG 291 (510)
Q Consensus 214 fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~-~g 291 (510)
-.+++++|+++++.+ +++||+++=--- +...+++.++ +|.| | ..+-+-+ + ..++...+. ++
T Consensus 50 R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI-----D-aT~r~rP-~----~~~~~~iK~~~~ 112 (283)
T cd04727 50 RMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI-----D-ESEVLTP-A----DEEHHIDKHKFK 112 (283)
T ss_pred ecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-H----HHHHHHHHHHcC
Confidence 346778888888765 578888774322 6667777765 6777 4 2222222 1 333333343 47
Q ss_pred CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 292 KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 292 kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.|++. .-+.+.+.-+++..|+|.|=-+.|--.| +-.++|+-+++|-.++.....|
T Consensus 113 ~l~MA--------------D~stleEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 113 VPFVC--------------GARNLGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred CcEEc--------------cCCCHHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHhCC
Confidence 77653 1233556677899999999988886666 6789999999999888865433
No 193
>PRK15452 putative protease; Provisional
Probab=69.28 E-value=30 Score=37.78 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=58.6
Q ss_pred ceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCC-----CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 010449 235 IQLMSKVENQEGVVNFDDILRETDSFMVARGDLGME-----IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR 309 (510)
Q Consensus 235 ~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e-----~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~ 309 (510)
+.+.|...+.++++ .+|..-+|+|.+|-..++.- +..++ .++.++.|+++|+.+.++++.+
T Consensus 4 peLlapag~~e~l~--aAi~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n~i-------- 69 (443)
T PRK15452 4 PELLSPAGTLKNMR--YAFAYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVNIA-------- 69 (443)
T ss_pred cEEEEECCCHHHHH--HHHHCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEecCc--------
Confidence 45777777777764 23344489999998777763 23332 5567889999999999987644
Q ss_pred CChHhHHHHHH----HHHcCCceEEec
Q 010449 310 PTRAEATDVAN----AVLDGTDCVMLS 332 (510)
Q Consensus 310 PtraEv~Dv~~----av~~G~D~imLs 332 (510)
|...|..++.. ....|+|+++.+
T Consensus 70 ~~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 70 PHNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 55556644444 445699999997
No 194
>PRK15452 putative protease; Provisional
Probab=69.25 E-value=60 Score=35.50 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHh
Q 010449 33 RSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHN 74 (510)
Q Consensus 33 ~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~ 74 (510)
+..+.|.+|+++|++.|||.+-.-++++..++++.-|++.+.
T Consensus 269 ~~i~~l~~L~~aGV~s~KIEgR~ks~~yv~~vv~~YR~ald~ 310 (443)
T PRK15452 269 RAIQHVERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDD 310 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999764
No 195
>PLN02970 serine racemase
Probab=69.21 E-value=93 Score=32.30 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+.+. .|..+.-..+.+.-..|++.+...+ ...++.+...++.++ ...+ |
T Consensus 89 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~-~ 149 (328)
T PLN02970 89 ALALAAKLRGIPAYIV-----------VPKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAV-L 149 (328)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCE-E
Confidence 4456899999999774 2333333344566678999877543 234556666665543 2222 2
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr~----RP~~PIiav 423 (510)
-..|. .+ ...+.....+.++.+++ ..+.+|+..-+|.++.-++++ .|...|+++
T Consensus 150 ~~~~~-------n~-~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 150 IHPYN-------DG-RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred eCCCC-------Cc-chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 11 11222334466666666 469999999999987777765 899999999
No 196
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=69.19 E-value=27 Score=35.52 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=57.9
Q ss_pred HHHhccCcC-CCCEEEEcC-------CCCHHHHHHHHHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeC
Q 010449 197 DILRWGVPN-NIDMIALSF-------VRKGSDLVNVRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 197 di~~~a~~~-g~d~I~~sf-------V~sa~dv~~vr~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igr 264 (510)
.+.++.++. |+++|++.= ....|-.+-++..++..+.++.||+.+- |.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333788889 999987642 2233333333444444445788999884 45666666555554 69999865
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 010449 265 GDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 297 (510)
Q Consensus 265 gDLg~e~~~~~v~~~qk~ii~~~~~~-gkpviva 297 (510)
-...- ...+++...-+.| |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 44321 3334555545555 4456 7898874
No 197
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=68.93 E-value=86 Score=30.04 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHHHhccCcCCCCEEEE-----cCCCC----HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCC
Q 010449 196 EDILRWGVPNNIDMIAL-----SFVRK----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARG 265 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~-----sfV~s----a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~Igrg 265 (510)
+.+ +.+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+--++-. ..+.++.+.+. +||+.+--+
T Consensus 20 ~~~-~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 20 EEV-KAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK---LPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHH-HHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC---CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 345 6778899999999 88854 555666655442 11123344443 23345555554 699776422
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc--CCCCC-CCHH
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPE 342 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~--Eta~G-~yP~ 342 (510)
.. ......++.++++|..+++++. |. |..| ....+..++|.+++.+ .+..| .++-
T Consensus 94 -------~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 94 -------AS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred -------cc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 11 1224558888999998887531 11 2222 2344456688766642 23333 3344
Q ss_pred HHHHHHHHH
Q 010449 343 IAVKIMRRI 351 (510)
Q Consensus 343 ~~V~~m~~i 351 (510)
..++.++++
T Consensus 152 ~~~~~i~~~ 160 (220)
T PRK05581 152 EVLEKIREL 160 (220)
T ss_pred HHHHHHHHH
Confidence 455554443
No 198
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.80 E-value=68 Score=31.46 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhc-C--eeEEeCCcccCCCCchhH----------
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRET-D--SFMVARGDLGMEIPVEKI---------- 276 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~-D--gI~IgrgDLg~e~~~~~v---------- 276 (510)
+.+=...+.++...+.+.|-+.|-... =.-.-|+.+++.+.++.+.. | .++||-|=. +..+.+
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~i-Eit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV---~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAI-EVTYTNPFASEVIKELVELYKDDPEVLIGAGTV---LDAVTARLAILAGAQF 91 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEE-EEECCCccHHHHHHHHHHHcCCCCCeEEeeeeC---CCHHHHHHHHHcCCCE
Confidence 444445677777777777766553322 12234777888888877654 2 477775421 122222
Q ss_pred ---HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 277 ---FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 277 ---~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
|.....+++.|+++|.|++ |--.-.+++..|...|+|.+-+
T Consensus 92 ivsP~~~~~v~~~~~~~~i~~i--------------PG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 92 IVSPSFNRETAKICNLYQIPYL--------------PGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred EECCCCCHHHHHHHHHcCCCEE--------------CCcCCHHHHHHHHHcCCCEEEE
Confidence 2344689999999999987 3333346667888899999998
No 199
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=68.80 E-value=35 Score=33.25 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=62.6
Q ss_pred hcHHHHHhccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEE-----ecC--------HHHHhchHHHHhh-
Q 010449 193 KDKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSK-----VEN--------QEGVVNFDDILRE- 256 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~Iiak-----IEt--------~~av~nldeI~~~- 256 (510)
.+.+++ +.+++.|+|.|.++- .++++.+.++.+.++. ..+.+-.. +++ ..-++-++.+.+.
T Consensus 82 ~~~ed~-~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDV-EKLLDLGVDRVIIGTAAVENPDLVKELLKEYGP--ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHH-HHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCC--CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 455677 667889999888762 3455555555444421 12211111 111 1111222223333
Q ss_pred cCeeEEeCCcccCC---CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 257 TDSFMVARGDLGME---IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 257 ~DgI~IgrgDLg~e---~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
+|++++. |+..+ -+. ++ +.+-+.++....|++.+.- .-+.+ |+..+...|+|++|+..
T Consensus 159 ~~~ii~~--~~~~~g~~~g~-~~----~~i~~i~~~~~ipvia~GG---------i~~~~---di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 159 LEGIIYT--DISRDGTLSGP-NF----ELTKELVKAVNVPVIASGG---------VSSID---DLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCEEEEE--eecCCCCcCCC-CH----HHHHHHHHhCCCCEEEeCC---------CCCHH---HHHHHHHCCCCEEEEeH
Confidence 5888764 22222 221 21 1122223446789988654 33444 55555668999999964
Q ss_pred CCCCCCCH
Q 010449 334 ESAAGAYP 341 (510)
Q Consensus 334 Eta~G~yP 341 (510)
---.|.+|
T Consensus 220 a~~~~~~~ 227 (230)
T TIGR00007 220 ALYEGKIT 227 (230)
T ss_pred HHHcCCCC
Confidence 33334433
No 200
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.74 E-value=10 Score=39.89 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=42.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 23 KIVCTLGPASRSVPMLEKLLRA--GMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~--G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
.+.+++|-..++.|.+++|+++ |+|+.=|+.+||..+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 4555889888899999999995 99999999999999998888888887
No 201
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=68.46 E-value=32 Score=34.90 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=58.1
Q ss_pred HHHHhccCcCCCCEEEEc------CCCCHHHHHH-HHHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeC
Q 010449 196 EDILRWGVPNNIDMIALS------FVRKGSDLVN-VRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~s------fV~sa~dv~~-vr~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igr 264 (510)
+.+.++.++.|+++|++. +-=|.++=.+ ++...+..+.++.|++-+- +.++++......+. +|++|+.+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 333378889999999974 2233333333 3444444455788898884 34455444444443 69999986
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 265 GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 265 gDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-... ..+.+.+...-+.|.+ +.+.|+++.
T Consensus 102 P~y~-~~~~~~i~~~~~~i~~---~~~~pi~lY 130 (285)
T TIGR00674 102 PYYN-KPTQEGLYQHFKAIAE---EVDLPIILY 130 (285)
T ss_pred CcCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5442 2333555555555544 457898864
No 202
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=68.45 E-value=29 Score=35.64 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=57.2
Q ss_pred HHHhccCcCCCCEEEEc-------CCCCHHHHHHHHHHhccCCCCceEEEEec--CHHHHhchHHHHhh-cCeeEEeCCc
Q 010449 197 DILRWGVPNNIDMIALS-------FVRKGSDLVNVRKVLGPHAKNIQLMSKVE--NQEGVVNFDDILRE-TDSFMVARGD 266 (510)
Q Consensus 197 di~~~a~~~g~d~I~~s-------fV~sa~dv~~vr~~l~~~~~~~~IiakIE--t~~av~nldeI~~~-~DgI~IgrgD 266 (510)
.+.++.++.|+|+|++. .....|-.+-++...+..+.++.+|+-+- |.++++.+....+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 33378899999999873 23333334444444455556788888873 33444444443333 6999998765
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 267 LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 267 Lg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
+. ....+.+...-+.+ |.+.+.|+++.
T Consensus 112 y~-~~~~~~i~~~f~~v---a~~~~lpi~lY 138 (303)
T PRK03620 112 LT-EAPQEGLAAHVEAV---CKSTDLGVIVY 138 (303)
T ss_pred CC-CCCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 43 22334555555555 44568998874
No 203
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=68.13 E-value=24 Score=38.30 Aligned_cols=141 Identities=16% Similarity=0.329 Sum_probs=77.1
Q ss_pred CCCccccCCCCCEEEEe--------CCeEEEEEEEEeCCCCe--------EEEEEeeCeEecCCCCcccCCccccCCCCC
Q 010449 128 YKKLPVDVKPGNTILCA--------DGTITLTVLSCDPKSGT--------VRCRCENTAMLGERKNVNLPGVVVDLPTLT 191 (510)
Q Consensus 128 ~~~~~~~v~~gd~i~id--------DG~i~l~V~~~~~~~~~--------i~~~v~~~G~l~s~K~vnlp~~~~~lp~lt 191 (510)
+..+--.++.|++|.+- .|..+|.|.++++.+-. ++-+.... |.-=|....++|.++
T Consensus 57 ~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~e-------Glfd~~~k~~lP~~p 129 (432)
T TIGR00237 57 NNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAE-------GLFDQEYKKPLPHFP 129 (432)
T ss_pred hhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHC-------CCCCchhcCCCCCCC
Confidence 34444567899998766 78899999888653210 11112223 333344445555444
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEE---EEecCHHHHhchHHHHh---------hcCe
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLM---SKVENQEGVVNFDDILR---------ETDS 259 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Ii---akIEt~~av~nldeI~~---------~~Dg 259 (510)
.+ | | |+-| .+++-++.+.+.+..+.....+. +.+.-.+| ..+|++ ..|.
T Consensus 130 ~~----i---~-------vits--~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a---~~~i~~al~~~~~~~~~dv 190 (432)
T TIGR00237 130 KR----V---G-------VITS--QTGAALADILHILKRRDPSLKVVIYPTLVQGEGA---VQSIVESIELANTKNECDV 190 (432)
T ss_pred CE----E---E-------EEeC--CccHHHHHHHHHHHhhCCCceEEEecccccCccH---HHHHHHHHHHhhcCCCCCE
Confidence 22 1 1 3334 56677777777776654332222 22222222 222222 1599
Q ss_pred eEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 260 FMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 260 I~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
|+|+||-=+.| .-++.-...++++..+...|||.|
T Consensus 191 iii~RGGGs~e---DL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 191 LIVGRGGGSLE---DLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred EEEecCCCCHH---HhhhcCcHHHHHHHHcCCCCEEEe
Confidence 99999853332 112233456777778889999987
No 204
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=68.06 E-value=94 Score=31.44 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+...|+..|.++++.. |....-.-+...-..|++.+...+ . ..++.+...++.++- ..+ |
T Consensus 79 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~-~~~-~ 139 (304)
T cd01562 79 GVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEE-GLT-F 139 (304)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CCE-E
Confidence 55678999999998742 322233345567778999777764 2 445666666655442 221 2
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAKY----RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a~aIvv~T~sG~tA~~iSr~----RP~~PIiav 423 (510)
-..| ..+. ........+.++..+++ .+.||+.+-+|.|..-++++ .|...|+++
T Consensus 140 ~~~~-------~n~~-~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv 198 (304)
T cd01562 140 IHPF-------DDPD-VIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGV 198 (304)
T ss_pred eCCC-------CCcc-hhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 1111 12223345667777764 69999999999987666554 788999999
No 205
>PRK10717 cysteine synthase A; Provisional
Probab=67.99 E-value=54 Score=33.96 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc----
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAES---- 357 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~---- 357 (510)
-+...|+.+|.|+.+. .|..+.-.-+...-..|++.+...+.. ...|-..++...+++++.+.
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCCC
Confidence 3455789999999774 233333334566667899988775321 01112234444444444321
Q ss_pred ccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 358 SLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
.+.+...|. .|.....--...+.++.++++ .+.||+..-+|.++.-+++ ++|.+.|+++
T Consensus 145 ~~~~~~~~~-------~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 145 GAIWANQFD-------NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred CeEecCCCC-------ChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 111111110 111111112234666777775 7999999999998665544 6799999999
No 206
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.91 E-value=9.1 Score=41.75 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=41.2
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 21 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
+-.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...+.|+.+|+
T Consensus 212 ~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 212 RLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred CEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 34455678877778899999999999999999999988877777777765
No 207
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=67.91 E-value=28 Score=34.75 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=68.4
Q ss_pred hccCcCCCCEEEE---------------cCCCCHHHHHHHHHHhccCC--CCceEEEEecCH--------HHHhchHHHH
Q 010449 200 RWGVPNNIDMIAL---------------SFVRKGSDLVNVRKVLGPHA--KNIQLMSKVENQ--------EGVVNFDDIL 254 (510)
Q Consensus 200 ~~a~~~g~d~I~~---------------sfV~sa~dv~~vr~~l~~~~--~~~~IiakIEt~--------~av~nldeI~ 254 (510)
+...+.|+++|.+ +.+...+.+..++......+ .+..|+|..|+. ++++....-.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 5556799999999 45555666666666555444 389999996653 4566666666
Q ss_pred hh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChHhHHHHHHHHHcCCceEEec
Q 010449 255 RE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPR-PTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 255 ~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~-PtraEv~Dv~~av~~G~D~imLs 332 (510)
++ +|++|+-... -.+.+-+.+++...|+.+- +..++. ++..|+. ..|+.-+...
T Consensus 171 ~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~l~------~lG~~~v~~~ 226 (243)
T cd00377 171 EAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAELA------ELGVRRVSYG 226 (243)
T ss_pred HcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHHHH------HCCCeEEEEC
Confidence 66 7999995322 1245555666688998762 112221 4444443 3588877664
No 208
>PRK07334 threonine dehydratase; Provisional
Probab=67.91 E-value=56 Score=35.01 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+++. .|..+.-..+...-..|++.++.. ...-++++...+++++. .. +|
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~-~~ 145 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GL-TF 145 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC-Ee
Confidence 4556899999999873 233333345566677899998653 24566777777765542 22 22
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
...|. .| ...+.-...+.++.+++ +.+.+|+..-+|.++.-+++ ++|...|+++
T Consensus 146 ~~~~~-------~~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 146 VHPYD-------DP-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred cCCCC-------CH-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 11233344566666666 46899999999998666555 5899999999
No 209
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=67.57 E-value=63 Score=32.16 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=89.7
Q ss_pred CCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH-----HhchHHHHhh---cCe
Q 010449 188 PTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG-----VVNFDDILRE---TDS 259 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a-----v~nldeI~~~---~Dg 259 (510)
|..|+.|...+-.-|.++++..|+++ +--+..++++++.. ..+.+..=|=-|.| +.-.+...+. +|-
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~-~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdE 93 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGS-TVVRVCTVIGFPLGANTTAVKAAEAREAIENGADE 93 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccC-CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCCe
Confidence 67788888877678888998888876 44788888888653 23334444432222 2222222222 221
Q ss_pred --eEEeCCcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCC
Q 010449 260 --FMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGES 335 (510)
Q Consensus 260 --I~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Et 335 (510)
++|..|-| .+=.++.|..-.+.+.++|..+ -.-||+-|-.| |..|.....+ ++..|+|.|=-|.-=
T Consensus 94 iDmVinig~~-k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L---------t~ee~~~A~~i~~~aGAdFVKTSTGf 163 (228)
T COG0274 94 IDMVINIGAL-KSGNWEAVEREIRAVVEACADAVVLKVILETGLL---------TDEEKRKACEIAIEAGADFVKTSTGF 163 (228)
T ss_pred eeeeeeHHHH-hcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 22233322 1112355555666666777654 33468766655 5566655454 678899998766433
Q ss_pred CCCCCHHHHHHHHHHHH
Q 010449 336 AAGAYPEIAVKIMRRIC 352 (510)
Q Consensus 336 a~G~yP~~~V~~m~~i~ 352 (510)
+-|.--++-|+.|++++
T Consensus 164 ~~~gAT~edv~lM~~~v 180 (228)
T COG0274 164 SAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 34555688999999986
No 210
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=67.37 E-value=28 Score=36.87 Aligned_cols=87 Identities=17% Similarity=0.336 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhh-cCeeEEe-CCcccCCC-----CchhHHHHHHHHHHHHH
Q 010449 217 KGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRE-TDSFMVA-RGDLGMEI-----PVEKIFLAQKMMIYKCN 288 (510)
Q Consensus 217 sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-~DgI~Ig-rgDLg~e~-----~~~~v~~~qk~ii~~~~ 288 (510)
+.+++..+++.. +.+|+.| |-++ +......+. +|+|.+. -| |..+ .++.++++ +.
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld~~~~~~~~l~~i-------~~ 271 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLDGGPASFDSLPEI-------AE 271 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCCCCchHHHHHHHH-------HH
Confidence 778898888865 3689999 3333 222333333 6999994 11 2222 12222222 22
Q ss_pred Hc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 289 LV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 289 ~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+. ..|+|....+- .-.|+..++..|||++|+.
T Consensus 272 a~~~~i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 272 AVNHRVPIIFDSGVR------------RGEHVFKALASGADAVAVG 305 (351)
T ss_pred HhCCCCeEEEECCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 23 47888765543 3579999999999999985
No 211
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=67.37 E-value=1.1e+02 Score=33.03 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhc-cCCCCceEEEEecCH-HHHh-chHHHHhh-cC--eeEE
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLG-PHAKNIQLMSKVENQ-EGVV-NFDDILRE-TD--SFMV 262 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~-~~~~~~~IiakIEt~-~av~-nldeI~~~-~D--gI~I 262 (510)
.+|.+++..|.+..-++|+|+|=+.|-.+.+...+..+.+. ..+. .+.+++... ..++ .++.++.+ .| .+++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHHHhCCCCEEEEEE
Confidence 45888888886666679999998877765544444444443 2211 223333221 2223 55666655 46 5888
Q ss_pred eCCcccCCCC----chhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEeccCCCC
Q 010449 263 ARGDLGMEIP----VEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGESAA 337 (510)
Q Consensus 263 grgDLg~e~~----~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imLs~Eta~ 337 (510)
+-.|+.+... .+++...-+..++.++.+|.++... +|.. .+-+..-+.+++.++. .|++.|-|. +|.=
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~---~rt~~~~l~~~~~~~~~~ga~~i~l~-DTvG 170 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDA---TRTDPEFLAEVVKAAIEAGADRINLP-DTVG 170 (409)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eecc---ccCCHHHHHHHHHHHHHcCCcEEEEC-CCcC
Confidence 8888776654 3677888889999999999887652 2222 1333333455555444 459999996 8877
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 010449 338 GAYPEIAVKIMRRICIEAE 356 (510)
Q Consensus 338 G~yP~~~V~~m~~i~~~aE 356 (510)
+-.|-+.-..++.+.+..-
T Consensus 171 ~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 171 VATPNEVADIIEALKANVP 189 (409)
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 8889999888888877653
No 212
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=67.00 E-value=1.3e+02 Score=30.18 Aligned_cols=147 Identities=20% Similarity=0.155 Sum_probs=87.2
Q ss_pred CChhcHHHHHhccCcCCCCEEEEcC---------------CCCHHHHHHHHHHhccCCCCceEEEEecCHHH-HhchHHH
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALSF---------------VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG-VVNFDDI 253 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~sf---------------V~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a-v~nldeI 253 (510)
++..++..+.+...+.|+|.|=+.| ....+.++.+++.. .+.++.+.+....+ .+.++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~----~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL----KQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc----cCCEEEEEecCCccCHHHHHHH
Confidence 4667777776777889999886642 22223344443332 34555555321111 1223333
Q ss_pred Hhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEe
Q 010449 254 LRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVML 331 (510)
Q Consensus 254 ~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imL 331 (510)
.+. .|.+-+. .+..++. ..++.++.+++.|..+.+.- . + ...=+.+++.+++.. ...|+|.+.|
T Consensus 95 ~~~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~--~--~--~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 95 ADLGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFL--M--M--SHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHcCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEE--E--e--ccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 332 4655442 2333333 34668899999999876542 1 1 123456778777775 4459999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 332 SGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 332 s~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
.+|.=..+|.+.-+.++.+-+..
T Consensus 161 -~DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 161 -TDSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHhC
Confidence 48888889999888877766543
No 213
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.10 E-value=23 Score=37.47 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred HhchHHHHhh-cCeeEEeCCcccCCCCch--hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHh--HHHHHHH
Q 010449 247 VVNFDDILRE-TDSFMVARGDLGMEIPVE--KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAE--ATDVANA 321 (510)
Q Consensus 247 v~nldeI~~~-~DgI~IgrgDLg~e~~~~--~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraE--v~Dv~~a 321 (510)
++.+...++. +|+|.+|=-+++.-.... .... .++.++.|+++||-+.++.+++ +.+...| ...+..+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~~l 88 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLDRL 88 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHHHH
Confidence 4444444444 799999955676655441 2222 5788999999999999987655 2233333 3556778
Q ss_pred HHcCCceEEec
Q 010449 322 VLDGTDCVMLS 332 (510)
Q Consensus 322 v~~G~D~imLs 332 (510)
+..|+|++.++
T Consensus 89 ~e~GvDaviv~ 99 (347)
T COG0826 89 VELGVDAVIVA 99 (347)
T ss_pred HHcCCCEEEEc
Confidence 89999999997
No 214
>TIGR03586 PseI pseudaminic acid synthase.
Probab=66.02 E-value=62 Score=33.94 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=39.7
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-cCCceEEe
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVML 331 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~imL 331 (510)
.|.+=||-+|+.- -.+++++.+.||||++.|.| .|-+|+......+. .|.+-++|
T Consensus 111 v~~~KI~S~~~~n-----------~~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 111 VPAYKIASFEITD-----------LPLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCEEEECCccccC-----------HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCcEEE
Confidence 6888889888732 22455677789999998875 36689988888876 57743444
No 215
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=66.01 E-value=1.7e+02 Score=30.24 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=74.2
Q ss_pred cCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHH-Hc
Q 010449 213 SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCN-LV 290 (510)
Q Consensus 213 sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~-~~ 290 (510)
.-.+++++|+++++.+ +++||+|+=--- +...+.+.+. +|.| | ..+..-+ . ...+...+ ++
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-a----de~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-A----DWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-H----HHHHHHHHHHc
Confidence 4567888888888876 588888773221 4555555554 6777 4 2222211 1 22222233 34
Q ss_pred CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc
Q 010449 291 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS 358 (510)
Q Consensus 291 gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~ 358 (510)
+.|+..- -+.+.+..+++..|+|.|--++|--.| +-+|+|+-|+.+-.++...
T Consensus 114 ~vpfmad--------------~~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCG--------------ARDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEcc--------------CCCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 7776531 123455567899999999999998777 6899999999998887654
No 216
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=65.78 E-value=54 Score=33.80 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=70.2
Q ss_pred CceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcCCC
Q 010449 234 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML---ESMIKSPR 309 (510)
Q Consensus 234 ~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL---eSM~~~~~ 309 (510)
.+.+...+... .++.+.+-++. .+-||+..- +++.++....-+++.+.|+.+|.++=..-.-+ |.++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 56788888886 55555555544 588999743 46788888999999999999999983322222 22221111
Q ss_pred CChHhHHHHHHHHHcCCceEEeccCCCCCCCHH
Q 010449 310 PTRAEATDVANAVLDGTDCVMLSGESAAGAYPE 342 (510)
Q Consensus 310 PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~ 342 (510)
. .....++..++..|+|++-++-=|..|.||-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1 1233444567789999999998899999974
No 217
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=65.77 E-value=61 Score=32.97 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=56.3
Q ss_pred hHHHHhh--cCeeEEe--CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHH-HHHHc
Q 010449 250 FDDILRE--TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVLD 324 (510)
Q Consensus 250 ldeI~~~--~DgI~Ig--rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~-~av~~ 324 (510)
++..++. +||++++ -|+. ..+..++-..+-+..++.++ -..|+|+-+ ...+-.|+.+.+ .|...
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~-~~Lt~~Er~~~~~~~~~~~~-~~~~viagv---------~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEG-FLLSVEERKQIAEIVAEAAK-GKVTLIAHV---------GSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCc-ccCCHHHHHHHHHHHHHHhC-CCCeEEecc---------CCCCHHHHHHHHHHHHHc
Confidence 4555555 6999886 1222 33344443333344444332 235766521 234455666555 47889
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
|+|++|+..--....-+.+.++..+.||..+
T Consensus 96 Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 96 GYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998765444444578889999998876
No 218
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.68 E-value=1.1e+02 Score=31.74 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=76.5
Q ss_pred EcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHH-H
Q 010449 212 LSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCN-L 289 (510)
Q Consensus 212 ~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~-~ 289 (510)
+.-..++++|.++++.. +++|++|+=--- +...+.+.+. +|.| | ..+..-+ . ...+...+ +
T Consensus 57 ~~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-a----d~~~~~~K~~ 119 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-A----DEEYHIDKWD 119 (293)
T ss_pred eeecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-h----HHHHHHHHHH
Confidence 44567899999888876 577887763211 5555555554 5777 4 2222111 1 12222222 3
Q ss_pred cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 290 VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 290 ~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
++.|+..- -+.+.+..+++..|+|.|--+||.-.|+ -+|+|+-|+.|..+.-...-|
T Consensus 120 f~~~fmad--------------~~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 120 FTVPFVCG--------------ARNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred cCCCEEcc--------------CCCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhCC
Confidence 47776531 2335556778999999999999999998 789999999999887765443
No 219
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=65.64 E-value=85 Score=33.91 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCC-CHHHHHHHHHHhccCCCCceEEEEecCHH-HHhchHHHHhh-c
Q 010449 181 PGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQE-GVVNFDDILRE-T 257 (510)
Q Consensus 181 p~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~-sa~dv~~vr~~l~~~~~~~~IiakIEt~~-av~nldeI~~~-~ 257 (510)
|...+-+..++..+...+.+.+++.|+++|-+.+-. +.+..+.++++.+..+ ...++.-+-... +-..++..++. +
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGA 82 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGA 82 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCC
Confidence 344445556677777777577788999999763211 2444555655554332 344553322221 22255555554 6
Q ss_pred CeeEE-eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 258 DSFMV-ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 258 DgI~I-grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
|++.+ +-.| . ..-+++++.|+++|.++++-. + ..+|.. ..+..+...|+|.+.+.
T Consensus 83 dgV~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~--~------s~~t~~--e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 83 DIVCILGLAD--------D--STIEDAVRAARKYGVRLMADL--I------NVPDPV--KRAVELEELGVDYINVH 138 (430)
T ss_pred CEEEEecCCC--------h--HHHHHHHHHHHHcCCEEEEEe--c------CCCCHH--HHHHHHHhcCCCEEEEE
Confidence 99886 3221 0 113678889999999988620 0 112322 33566777899999765
No 220
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.50 E-value=9.1 Score=39.20 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=48.7
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
.+.+ ..+++.|+|.|.+=.. ++++++++.+.+.+.+.+.. .+||---|+ +|+.++++. .|+|.+|
T Consensus 192 leea-~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 192 LEDA-LKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred HHHH-HHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 3455 5678999999999888 89999999998877652222 246655555 578888887 7999987
No 221
>PRK15447 putative protease; Provisional
Probab=65.23 E-value=29 Score=35.79 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=49.5
Q ss_pred hcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 256 ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 256 ~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-+|+|.+|-..++.-.++. ..-.+++++.|+++||.+.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 28 gaDaVY~g~~~~~~R~~f~--~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELK--VGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCCEEEECCccCCCccCCC--HHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 3799999977777655432 2445677888999999999987533 122458888888888899988754
No 222
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=65.23 E-value=95 Score=30.98 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=27.2
Q ss_pred hccCcCCCCEEEEcCCC----------CHHHHHHHHHHhccCCCC
Q 010449 200 RWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKN 234 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~----------sa~dv~~vr~~l~~~~~~ 234 (510)
+.+.++|+|+|=++.-. +.+++.++++.+++.|-.
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~ 72 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFR 72 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCc
Confidence 67789999999887432 677888999988876643
No 223
>PRK08638 threonine dehydratase; Validated
Probab=64.93 E-value=1.1e+02 Score=31.84 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+--..+...-..|++-+... ....++++.+.+++++- .. .|
T Consensus 89 alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~-g~-~~ 149 (333)
T PRK08638 89 GVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEE-GR-TF 149 (333)
T ss_pred HHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC-EE
Confidence 4556899999999874 243333344555567899888652 23467777777776652 22 22
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr~----RP~~PIiav 423 (510)
-..|. .|. ..+.-...+.++.+++ +.+.||+..-+|.+..-++++ .|...|+++
T Consensus 150 ~~~~~-------~~~-~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigV 208 (333)
T PRK08638 150 IPPYD-------DPK-VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGV 208 (333)
T ss_pred cCcCC-------Ccc-hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 111 1122233445555554 579999999999997777764 799999999
No 224
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=64.76 E-value=77 Score=34.72 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=67.4
Q ss_pred HHHHhccCcCCCCEEEEcCC-C-CHHHHHHHHHH-h--ccCC---CCceEEEEecCHHHHhch---------HHHHhh--
Q 010449 196 EDILRWGVPNNIDMIALSFV-R-KGSDLVNVRKV-L--GPHA---KNIQLMSKVENQEGVVNF---------DDILRE-- 256 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV-~-sa~dv~~vr~~-l--~~~~---~~~~IiakIEt~~av~nl---------deI~~~-- 256 (510)
..+ +..++.|+..|..|.- . ++..+ ..+.. + ...+ ....|++|+-+++-...+ +.+.+.
T Consensus 91 ~~v-~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 91 GLV-DLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHH-HHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 344 5668899998877622 2 22222 22211 1 0001 124799998877755441 122211
Q ss_pred --------------cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHH------c--CCCeEEehhhhHhhhcCCCCChHh
Q 010449 257 --------------TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNL------V--GKPVVTATQMLESMIKSPRPTRAE 314 (510)
Q Consensus 257 --------------~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~------~--gkpvivaTqmLeSM~~~~~PtraE 314 (510)
+|.|.+. +|=|-+.+-......-..|++.+.+ + ..|||.|.-+. .
T Consensus 169 it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~------------t 235 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG------------T 235 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC------------C
Confidence 5888887 7777776532222222333322221 2 35688887654 2
Q ss_pred HHHHHHHHHcCCceEEec
Q 010449 315 ATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 315 v~Dv~~av~~G~D~imLs 332 (510)
-.+++.|...|+|++.+.
T Consensus 236 ~~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 236 PEAAAAAFMLGADFIVTG 253 (444)
T ss_pred HHHHHHHHHcCCcEEEec
Confidence 356789999999999883
No 225
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.68 E-value=1.2e+02 Score=29.68 Aligned_cols=101 Identities=11% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhH-------------HHHH
Q 010449 214 FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKI-------------FLAQ 280 (510)
Q Consensus 214 fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v-------------~~~q 280 (510)
...++++...+.+.+-+.|-. .+=.-.-|+.+++.++++.+..+.++||-|=- +..+.+ |...
T Consensus 11 r~~~~~~a~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTV---l~~e~a~~ai~aGA~FivSP~~~ 86 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEEAIVGAGTI---LNAKQFEDAAKAGSRFIVSPGTT 86 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeC---cCHHHHHHHHHcCCCEEECCCCC
Confidence 345666666666666554422 12223356677777777665556666765421 112211 2345
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 281 KMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 281 k~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..+++.|+++|.|++ |--.=.+++..|...|+|.+=+=
T Consensus 87 ~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 87 QELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred HHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 789999999999986 33333466788999999998774
No 226
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=64.56 E-value=39 Score=33.96 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred hccCcCCCCEEEEcCC------CCHHHHHHH-HHHhccCCCCceEEEEecC---HHHHhchHHHHhh-cCeeEEeCCccc
Q 010449 200 RWGVPNNIDMIALSFV------RKGSDLVNV-RKVLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDLG 268 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV------~sa~dv~~v-r~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~DgI~IgrgDLg 268 (510)
++.++.|+++|++.-- -|.++=+++ +...+..+.++.|++.+=+ .++++......+. +|++|+.+-.+.
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~ 104 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYN 104 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 7888999999886422 233443333 3333444457888988843 3344444444443 699999876554
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 269 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
. .+.+.+...-+.|+++ .+.|+++-
T Consensus 105 ~-~~~~~~~~~~~~ia~~---~~~pi~iY 129 (281)
T cd00408 105 K-PSQEGIVAHFKAVADA---SDLPVILY 129 (281)
T ss_pred C-CCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 3 3445655555666544 68898863
No 227
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=64.54 E-value=1.2e+02 Score=30.19 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=66.7
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcC----------------CCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHH
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSF----------------VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL 254 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sf----------------V~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~ 254 (510)
+..+...+.+. ++.++|+|=+.+ .++++-+.++-+.+... ++.|.+||=-----.+..+++
T Consensus 78 ~~ee~~~~a~~-v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a 154 (231)
T TIGR00736 78 DLEEAYDVLLT-IAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDA 154 (231)
T ss_pred CHHHHHHHHHH-HhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHH
Confidence 44555555233 445777777653 34666666666666533 678999994311111222443
Q ss_pred hh-----cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHc-C-CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCc
Q 010449 255 RE-----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-G-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD 327 (510)
Q Consensus 255 ~~-----~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~-g-kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D 327 (510)
+. +|+|.|..+.-| -+.+.-+.++..+++ + +|+|- ++..-|... +...+..|+|
T Consensus 155 ~~l~~aGad~i~Vd~~~~g-------~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~ed---a~e~l~~GAd 215 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPG-------KPYADMDLLKILSEEFNDKIIIG---------NNSIDDIES---AKEMLKAGAD 215 (231)
T ss_pred HHHHHcCCCEEEEeeCCCC-------CchhhHHHHHHHHHhcCCCcEEE---------ECCcCCHHH---HHHHHHhCCC
Confidence 32 699988522211 121333444444443 3 88876 455556554 4455556999
Q ss_pred eEEecc
Q 010449 328 CVMLSG 333 (510)
Q Consensus 328 ~imLs~ 333 (510)
++|+.-
T Consensus 216 ~VmvgR 221 (231)
T TIGR00736 216 FVSVAR 221 (231)
T ss_pred eEEEcH
Confidence 999863
No 228
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=64.53 E-value=90 Score=31.66 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=91.0
Q ss_pred CCCChhcHHHHHhccCc--CCCCEEEEcCCCCHHHHHHHHHHhccCCC-CceEEEEecCHHHHhchHHHHhhc-CeeEEe
Q 010449 188 PTLTEKDKEDILRWGVP--NNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLMSKVENQEGVVNFDDILRET-DSFMVA 263 (510)
Q Consensus 188 p~lt~~D~~di~~~a~~--~g~d~I~~sfV~sa~dv~~vr~~l~~~~~-~~~IiakIEt~~av~nldeI~~~~-DgI~Ig 263 (510)
|..|+.|.+.+.+.|.+ .++..|+++ +..+..+++.|...+. ++++.+=|=-|.|-...+.-+..+ .++--|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 67889988888778887 588888775 6789999999864443 688888887777766554444321 111111
Q ss_pred CC--cccCCCC------chhHHHHHHHHHHHHHHcCCC--eEEehhhhHhhhcCCCCChHh-HHHHHH-HHHcCCceEEe
Q 010449 264 RG--DLGMEIP------VEKIFLAQKMMIYKCNLVGKP--VVTATQMLESMIKSPRPTRAE-ATDVAN-AVLDGTDCVML 331 (510)
Q Consensus 264 rg--DLg~e~~------~~~v~~~qk~ii~~~~~~gkp--vivaTqmLeSM~~~~~PtraE-v~Dv~~-av~~G~D~imL 331 (510)
-- |+-+.++ ++.+..-.+.+.++|.. |+| ||+=|..| |..| +..... ++..|+|.|=-
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEEEc
Confidence 11 1111222 23444444566666632 455 46655444 4453 554444 78889999864
Q ss_pred ccCCCCCCCH----HHHHHHHHHHHHH
Q 010449 332 SGESAAGAYP----EIAVKIMRRICIE 354 (510)
Q Consensus 332 s~Eta~G~yP----~~~V~~m~~i~~~ 354 (510)
| .|..| .+.|+.|++.+++
T Consensus 167 S----TGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 167 S----TGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred C----CCCCCCCCCHHHHHHHHHHHHh
Confidence 4 55544 7888998887654
No 229
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=63.82 E-value=1.1e+02 Score=32.98 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+..+|+++|.++.+- .|..+.-..+...-..|++.+...+.. ....+...++...++.++.+.. ++
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~-~~ 142 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGA-HI 142 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCc-Ee
Confidence 3456899999999763 244343445566677899987765321 1112223355555555443332 11
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
...|. .+..+..-....+.++.++++ .++||+..-+|.|+.-+++ ++|.+.|+++
T Consensus 143 ~~~~~-------~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~v 203 (454)
T TIGR01137 143 LDQYN-------NPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGA 203 (454)
T ss_pred cccCC-------ChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 11111 111121112344566777764 7999999999998766555 6799999999
No 230
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.79 E-value=1.1e+02 Score=30.91 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=73.7
Q ss_pred hccCcCCCCEEEEcCCC-CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCC-CCchhHH
Q 010449 200 RWGVPNNIDMIALSFVR-KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGME-IPVEKIF 277 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~-sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e-~~~~~v~ 277 (510)
..+.+.|+|+|.+---- +.+++.++.+...+.| ..+++-+-|.+-++...+. -+|.|-+..-||... ..++.
T Consensus 127 ~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~~A~~~--gadiIgin~rdl~~~~~d~~~-- 200 (260)
T PRK00278 127 YEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELERALKL--GAPLIGINNRNLKTFEVDLET-- 200 (260)
T ss_pred HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHc--CCCEEEECCCCcccccCCHHH--
Confidence 45678899998876433 5667777777776553 4555555565544332211 268887776676433 12222
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 278 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 278 ~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
-.+++.... ...|++.-. ..=|.. |+..+...|+|+++....-..-..|.++++-+
T Consensus 201 --~~~l~~~~p-~~~~vIaeg---------GI~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 201 --TERLAPLIP-SDRLVVSES---------GIFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred --HHHHHHhCC-CCCEEEEEe---------CCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 233322221 123555322 222333 55666667999999877766667888887654
No 231
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.60 E-value=18 Score=37.32 Aligned_cols=65 Identities=8% Similarity=0.133 Sum_probs=46.7
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH--HhchHHHHhh-cCeeEEeC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~DgI~Igr 264 (510)
..+.+ ..+++.|+|+|.+-.. +.++++++.+.++..+.++.+.| .-| .+|+.++++. +|+|.++.
T Consensus 205 tleea-~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 205 TLEQV-QEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 44555 5678899999999955 77899998887765445554333 333 4678888877 79999984
No 232
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=63.39 E-value=1.3e+02 Score=30.59 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCC-HHHHHHHHHHHHHHHhcccc
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAY-PEIAVKIMRRICIEAESSLD 360 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~y-P~~~V~~m~~i~~~aE~~~~ 360 (510)
-+...|+.+|.|+.+. .|..+....+...-..|++.+...+ .| -.++++...++.++-..++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~- 134 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYV- 134 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeE-
Confidence 4456789999998764 4555555566667779999877643 22 2345555555443321111
Q ss_pred hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 010449 361 YRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLV----AKYRPAVPILSV 423 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~i----Sr~RP~~PIiav 423 (510)
+...|. .+..+..-....+.++.++++ .+.||+.+-+|.++.-+ ..++|...|+++
T Consensus 135 ~~~~~~-------~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 135 MLDQFE-------NPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred ecCCCC-------CchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 111010 111111123345667777774 79999999999887544 446799999999
No 233
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=63.37 E-value=37 Score=36.18 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh---h-cCeeEEeC-CcccCCCC-----chhHHHHHHHHHHH
Q 010449 217 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR---E-TDSFMVAR-GDLGMEIP-----VEKIFLAQKMMIYK 286 (510)
Q Consensus 217 sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~---~-~DgI~Igr-gDLg~e~~-----~~~v~~~qk~ii~~ 286 (510)
+-++++.+++.. +.+|+.| ++.+.++... . +|+|+|+- | |-++. ++.+++++ ++
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG--Grq~~~~~a~~~~L~ei~----~a 279 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG--GRQLDGGPAAFDSLQEVA----EA 279 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC--ccCCCCCCcHHHHHHHHH----HH
Confidence 557888888765 4688888 4444433333 2 58998872 2 33331 12222222 11
Q ss_pred HHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 287 CNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 287 ~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
. .-..|+|....+- .-.|+..|+..|+|++|+.-
T Consensus 280 v-~~~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 280 V-DKRVPIVFDSGVR------------RGQHVFKALASGADLVALGR 313 (367)
T ss_pred h-CCCCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcH
Confidence 1 1237888755433 35799999999999999863
No 234
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=63.36 E-value=1.1e+02 Score=32.57 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=56.9
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH-----------hchHHHHhh-cCe
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV-----------VNFDDILRE-TDS 259 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av-----------~nldeI~~~-~Dg 259 (510)
-.|.+.+.+.+.+.|+|.++++ .-.++.+......++.+|.|+-+...+ -..++-++. +|+
T Consensus 90 l~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA 162 (348)
T PRK09250 90 YFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA 162 (348)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 3455544477888999999998 233333333333467788888765444 124444444 575
Q ss_pred eEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 260 FMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 260 I~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
|-+. -.+|-+.. .+...--.+++..|++.|.|++.
T Consensus 163 V~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 163 VGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 5443 11111111 23444456899999999999876
No 235
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=63.17 E-value=40 Score=34.03 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=58.1
Q ss_pred hccCcCCCCEEEEcCC------CCHHHHHHHHH-HhccCCCCceEEEEecC---HHHHhchHHHHhh-cCeeEEeCCccc
Q 010449 200 RWGVPNNIDMIALSFV------RKGSDLVNVRK-VLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDLG 268 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV------~sa~dv~~vr~-~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~DgI~IgrgDLg 268 (510)
++.++.|++++++.-- -|.++=+++-+ ..+..+.++.|++-+-. .++++.+....+. +|++|+.+-...
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~ 107 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYN 107 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccC
Confidence 7889999999987622 23344444433 33333456788888853 4555555555444 699999965442
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 269 MEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
..+-+.+...-+.|+++ .+.|+++.
T Consensus 108 -~~~~~~l~~~~~~ia~~---~~~pi~lY 132 (284)
T cd00950 108 -KPSQEGLYAHFKAIAEA---TDLPVILY 132 (284)
T ss_pred -CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 22335666666666554 58999875
No 236
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.13 E-value=1.2e+02 Score=29.62 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 280 QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 280 qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
...+++.|+++|.|++ |--.=-+++..|...|+|.+=+=
T Consensus 90 ~~~v~~~~~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 90 TPELAKHAQDHGIPII--------------PGVATPSEIMLALELGITALKLF 128 (204)
T ss_pred CHHHHHHHHHcCCcEE--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 4589999999999986 22223466789999999998773
No 237
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=62.46 E-value=52 Score=34.79 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=90.8
Q ss_pred EEEcCCCCHHHHHHHHHHhcc----CCCCceEEEEecC------HH------HHhchHHHHhh-----cCeeEEeCCccc
Q 010449 210 IALSFVRKGSDLVNVRKVLGP----HAKNIQLMSKVEN------QE------GVVNFDDILRE-----TDSFMVARGDLG 268 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~----~~~~~~IiakIEt------~~------av~nldeI~~~-----~DgI~IgrgDLg 268 (510)
++.+--+++.-...+.+++.. ......|++ +.. .. ++++.+.+++. +|+++..+|=|.
T Consensus 38 ~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilp-vDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~l~ 116 (348)
T PRK09250 38 VMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILP-VDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGVLE 116 (348)
T ss_pred ccCcccCCHhHHHHHHHHhcccccCCCCCEEEEE-cccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHHHH
Confidence 455656677777777777753 112223332 221 11 56666655543 588887654332
Q ss_pred C-CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHH
Q 010449 269 M-EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 347 (510)
Q Consensus 269 ~-e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~ 347 (510)
. ..+ -...+|.|+--.-=.++.....+...-+++|-.|+..|+|+|..+-=-- +.+=-+.++.
T Consensus 117 ~~~~~---------------~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~E~~ml~~ 180 (348)
T PRK09250 117 AVARK---------------YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEESRRQIEE 180 (348)
T ss_pred hcccc---------------ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHHHHHHHHH
Confidence 1 111 1235787774221112211123455556889999999999998852211 2334677888
Q ss_pred HHHHHHHHhcc-cch-HHHHHHHHhcCCCC---CCchHHHHHHHHHHHHhcCCcEE
Q 010449 348 MRRICIEAESS-LDY-RAVFKEMIRSTPLP---MSPLESLASSAVRTANKARAKLI 398 (510)
Q Consensus 348 m~~i~~~aE~~-~~~-~~~~~~~~~~~~~~---~~~~~~ia~~av~~A~~~~a~aI 398 (510)
+.+++.+++++ +.- -..|.+-.. ...+ .+..+ +...|+++|-.++|+.|
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~-i~~~~d~~~~~d-~Ia~AaRiaaELGADIV 234 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSA-FKKDGDYHTAAD-LTGQANHLAATIGADII 234 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcc-cCCcccccccHH-HHHHHHHHHHHHcCCEE
Confidence 88888888875 100 001111000 0111 11234 55567888999999955
No 238
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=62.42 E-value=10 Score=42.02 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=38.0
Q ss_pred EecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 26 CTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 26 ~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
+.+|..-.+.+.++.|+++|++++-+|.+||...+..+.|+.||+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467776667899999999999999999999988877677777775
No 239
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=62.16 E-value=2.6e+02 Score=31.17 Aligned_cols=168 Identities=13% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCC-CCHHHHHHHHHHhccCCC----CceEEEEecCH-HHH-
Q 010449 175 RKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFV-RKGSDLVNVRKVLGPHAK----NIQLMSKVENQ-EGV- 247 (510)
Q Consensus 175 ~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV-~sa~dv~~vr~~l~~~~~----~~~IiakIEt~-~av- 247 (510)
|-|-..|+.. ++..++..|.+...+.|+|.|=+.|- .+.++.+.++.+.+.... ...+.++|-.- .+.
T Consensus 93 RDGeQ~~gv~-----fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGS-----LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 4455555553 57888888877778899999977664 456666556555432110 01112222100 000
Q ss_pred hchHHHHhh-----cCe--eEEeCCcccCC----CCchhHHHHHHHHHHHHHHcCCC-eEEehhhhHhhhcCCCCChHhH
Q 010449 248 VNFDDILRE-----TDS--FMVARGDLGME----IPVEKIFLAQKMMIYKCNLVGKP-VVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 248 ~nldeI~~~-----~Dg--I~IgrgDLg~e----~~~~~v~~~qk~ii~~~~~~gkp-vivaTqmLeSM~~~~~PtraEv 315 (510)
+.++..+++ .|. ++++-.|+-.+ ...+++.......++.++++|.. +.+..+ ...+-+..-+
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E------Da~Rtd~efl 241 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE------DGGRSDKEFL 241 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc------cccccCHHHH
Confidence 123333332 132 34444444322 23456666778899999999975 443221 2222223334
Q ss_pred HHHH-HHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHH
Q 010449 316 TDVA-NAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIE 354 (510)
Q Consensus 316 ~Dv~-~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~ 354 (510)
.+++ .+...|+|.|.|. +|.=...|.++-+.+..+.+.
T Consensus 242 ~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 242 CKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred HHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHH
Confidence 4444 3667899999987 888888999998888887654
No 240
>PLN02565 cysteine synthase
Probab=61.69 E-value=75 Score=33.05 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchH
Q 010449 283 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362 (510)
Q Consensus 283 ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 362 (510)
+...|+.+|.|+.+. .|..+....+...-..|++.++...+ . ...++++...++.++....+ +-
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~~-~~ 145 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNSY-IL 145 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCcE-ee
Confidence 345789999999763 46667777777788899998875432 1 22355666666554421222 11
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
..|. .+..+.--....+.++.++++ .+++|+..-+|-+..-++ .++|.+.|+++
T Consensus 146 ~q~~-------n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 146 QQFE-------NPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred cccC-------CHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 111111112334556666664 899999999998865544 46799999999
No 241
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=60.68 E-value=84 Score=31.53 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=55.6
Q ss_pred cCeeEEeCCccc--CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEecc
Q 010449 257 TDSFMVARGDLG--MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 333 (510)
Q Consensus 257 ~DgI~IgrgDLg--~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~ 333 (510)
.||+++. |--| ..+..++-..+.+.+++.++ -..|+++-+ ..++-.|..+.+. |-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 6899875 3222 33444454444444544442 246766533 3456667777776 4555999999976
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 010449 334 ESAAGAYPEIAVKIMRRICIEAE 356 (510)
Q Consensus 334 Eta~G~yP~~~V~~m~~i~~~aE 356 (510)
=.-...-+.+.++..+.|+..+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 55444456788889999888754
No 242
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=60.50 E-value=40 Score=34.63 Aligned_cols=64 Identities=9% Similarity=0.147 Sum_probs=43.0
Q ss_pred hccCcCCCCEEEE------------------cCCCCHHHHHHHHHHhcc-CCCCceEEEEecCH-------HHHhchHHH
Q 010449 200 RWGVPNNIDMIAL------------------SFVRKGSDLVNVRKVLGP-HAKNIQLMSKVENQ-------EGVVNFDDI 253 (510)
Q Consensus 200 ~~a~~~g~d~I~~------------------sfV~sa~dv~~vr~~l~~-~~~~~~IiakIEt~-------~av~nldeI 253 (510)
+...+.|+.+|.+ +.+...+.+..++..... .+.++.|+|..|.. ++++....-
T Consensus 99 ~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay 178 (285)
T TIGR02320 99 RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAY 178 (285)
T ss_pred HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHH
Confidence 4556789998888 333444455555554443 35679999997764 566666666
Q ss_pred Hhh-cCeeEEe
Q 010449 254 LRE-TDSFMVA 263 (510)
Q Consensus 254 ~~~-~DgI~Ig 263 (510)
.++ +|++|+-
T Consensus 179 ~eAGAD~ifv~ 189 (285)
T TIGR02320 179 AEAGADGIMIH 189 (285)
T ss_pred HHcCCCEEEec
Confidence 666 7999994
No 243
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=60.50 E-value=1.4e+02 Score=28.39 Aligned_cols=119 Identities=11% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEc--CC--CCHHHHHHHHHHhccCCCCceEEE--EecCHHHHhchHHHHhh-cCeeE
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALS--FV--RKGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFM 261 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~s--fV--~sa~dv~~vr~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~DgI~ 261 (510)
..+.++...+.+ +++.|+++|=+. +. ...+.++.+++... +..+++ |+-++... .+++..+. +|.|.
T Consensus 8 ~~~~~~a~~~~~-~l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~----~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 8 LLDIEEALELAE-KVADYVDIIEIGTPLIKNEGIEAVKEMKEAFP----DRKVLADLKTMDAGEY-EAEQAFAAGADIVT 81 (206)
T ss_pred CCCHHHHHHHHH-HcccCeeEEEeCCHHHHHhCHHHHHHHHHHCC----CCEEEEEEeeccchHH-HHHHHHHcCCCEEE
Confidence 345566666634 458889988773 31 11444555554321 223332 33343322 35555554 68777
Q ss_pred EeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 262 VARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 262 IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+-. +.+ ...-+++++.|+++|++++.+- . .|.. -..++..+...|+|.+.+.
T Consensus 82 vh~-----~~~----~~~~~~~i~~~~~~g~~~~~~~-------~--~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 82 VLG-----VAD----DATIKGAVKAAKKHGKEVQVDL-------I--NVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred Eec-----cCC----HHHHHHHHHHHHHcCCEEEEEe-------c--CCCC-hHHHHHHHHHcCCCEEEEc
Confidence 642 112 1233678889999999998741 0 1211 1244455666799988774
No 244
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.49 E-value=92 Score=31.97 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=70.1
Q ss_pred CCChhcHHHHH-------hccCcCCCCEEEEcCC-------------CC----------------HHHHHHHHHHhccCC
Q 010449 189 TLTEKDKEDIL-------RWGVPNNIDMIALSFV-------------RK----------------GSDLVNVRKVLGPHA 232 (510)
Q Consensus 189 ~lt~~D~~di~-------~~a~~~g~d~I~~sfV-------------~s----------------a~dv~~vr~~l~~~~ 232 (510)
.+|..|++.+. +.+.+.|+|+|=+-.. +. .+-++++|+.+ +
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~---g 206 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV---G 206 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---C
Confidence 46777766553 4677899999877543 22 13344444433 4
Q ss_pred CCceEEEEecCH----------HHHhchHHHHhh-cCeeEEeCCcccCCCCc----hhHHHHHHHHHHH-HHHcCCCeEE
Q 010449 233 KNIQLMSKVENQ----------EGVVNFDDILRE-TDSFMVARGDLGMEIPV----EKIFLAQKMMIYK-CNLVGKPVVT 296 (510)
Q Consensus 233 ~~~~IiakIEt~----------~av~nldeI~~~-~DgI~IgrgDLg~e~~~----~~v~~~qk~ii~~-~~~~gkpviv 296 (510)
.+..|..||--. ++++-+..+.+. .|.|-+..|+..-.... ..-.......++. .+..+.|++.
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 286 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIA 286 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEE
Confidence 577888888632 222223333333 58998887765322110 0001111222222 2334789887
Q ss_pred ehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEec
Q 010449 297 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLS 332 (510)
Q Consensus 297 aTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imLs 332 (510)
...+- |. .++..++.. |+|.|++.
T Consensus 287 ~Ggi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 287 VGGIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred eCCCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 54432 23 344566777 79999986
No 245
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.42 E-value=14 Score=39.82 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=41.9
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 21 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
|-..-+.+|+.-.+.+..+.|+++|+|++=|+.+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 44577778887667789999999999999999999988777777777776
No 246
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.25 E-value=15 Score=38.54 Aligned_cols=45 Identities=11% Similarity=0.358 Sum_probs=37.5
Q ss_pred EecCCCCCCHHHHHHHHHhCC--CeEEEeecCCCHHHHHHHHHHHHH
Q 010449 26 CTLGPASRSVPMLEKLLRAGM--NVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 26 ~TiGp~~~~~~~l~~li~~G~--~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
+.+|....+.+...+|+++|+ |+.=|+.+||..+..+++|+.+|+
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 345555566789999999966 999999999999988888888886
No 247
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=60.22 E-value=81 Score=33.11 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=38.0
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-cCCc
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTD 327 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~-~G~D 327 (510)
.|.+=||-+|+.- -.+++.+.+.|||+|+.|.| .|-+|+.....++. .|.+
T Consensus 110 v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 110 VPRFKIPSGEITN-----------APLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCEEEECcccccC-----------HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 6788888887743 23566677889999998885 35688988888777 4654
No 248
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=59.91 E-value=25 Score=31.29 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
-++.+++.+.+.++...+.+.-+.. .-++++++++-+|.|+.+-.+ ...+..+-+.|+++++|+|.+.
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 5666777777777777766644443 446788888888988887544 3456678889999999998753
No 249
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=59.90 E-value=1.1e+02 Score=28.91 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=66.4
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh-hcCeeEEeCCccc-------CCC
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLG-------MEI 271 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~DgI~IgrgDLg-------~e~ 271 (510)
+.+.+.|+|+|.++.- .-+...++..+. .+..+-+-+-|.+-+ .+..+ -+|.+++++=-=+ ...
T Consensus 67 ~la~~~g~~GvHl~~~--~~~~~~~r~~~~---~~~~ig~s~h~~~e~---~~a~~~g~dyi~~~~v~~t~~k~~~~~~~ 138 (196)
T TIGR00693 67 DLALALGADGVHLGQD--DLPASEARALLG---PDKIIGVSTHNLEEL---AEAEAEGADYIGFGPIFPTPTKKDPAPPA 138 (196)
T ss_pred HHHHHcCCCEEecCcc--cCCHHHHHHhcC---CCCEEEEeCCCHHHH---HHHhHcCCCEEEECCccCCCCCCCCCCCC
Confidence 4567789999998842 223455565553 233444444444332 22222 3699998753111 112
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHH
Q 010449 272 PVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 347 (510)
Q Consensus 272 ~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~ 347 (510)
+++.+. ++.+.+ .++|++....+ +. .++..+...|+|++.+.+.-..-..|.++++.
T Consensus 139 g~~~l~----~~~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 139 GVELLR----EIAATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred CHHHHH----HHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 333322 222222 24898765442 22 34556667899999998776656678777653
No 250
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=59.87 E-value=18 Score=35.35 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHh
Q 010449 33 RSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHN 74 (510)
Q Consensus 33 ~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~ 74 (510)
+..+.|.+|.++|++.|||.+-..+.++..++++..|++...
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999998663
No 251
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=59.81 E-value=99 Score=31.66 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=64.4
Q ss_pred ceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcCCCC
Q 010449 235 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML---ESMIKSPRP 310 (510)
Q Consensus 235 ~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL---eSM~~~~~P 310 (510)
+++......-.-++.+.+-+.. .+-||+-.-+| +.++....-+++++.|+.+|.++-.....+ |.+.....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7788888755444444444443 57899975554 778888889999999999998764322221 111111000
Q ss_pred ChHhHHHHHHHHH-cCCceEEeccCCCCCCCH
Q 010449 311 TRAEATDVANAVL-DGTDCVMLSGESAAGAYP 341 (510)
Q Consensus 311 traEv~Dv~~av~-~G~D~imLs~Eta~G~yP 341 (510)
+.-...++..++. .|+|.+-.|-=|..|.|+
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 0112334466675 799999988778888773
No 252
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=59.72 E-value=1.9e+02 Score=30.17 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc
Q 010449 291 GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG 333 (510)
Q Consensus 291 gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~ 333 (510)
..|+|.+..+- ...|+..++..|||+++++.
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAG 285 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcH
Confidence 68888766544 24789999999999999974
No 253
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=59.37 E-value=55 Score=33.35 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=55.4
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHH
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQK 281 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk 281 (510)
++..|+|..- =|++. +...-++.|. .+..+..-.-...+++-++..++..+++.||+| ||- -+.+....+
T Consensus 53 a~~~GaDL~H-iFCe~-~Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k~i~ 122 (306)
T KOG3974|consen 53 ALRVGADLSH-IFCEP-EAAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILKEIA 122 (306)
T ss_pred HHHhccceee-eeech-hHHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCC---CHHHHHHHH
Confidence 4556888433 23332 2233344444 344444444445588888888888999999986 554 245666778
Q ss_pred HHHHHHHHcCCCeEE
Q 010449 282 MMIYKCNLVGKPVVT 296 (510)
Q Consensus 282 ~ii~~~~~~gkpviv 296 (510)
+|++.|+..++|+.+
T Consensus 123 ~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 123 KILEYLRGKDVPLVI 137 (306)
T ss_pred HHHHHHhcCCCcEEE
Confidence 899999999999865
No 254
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=59.12 E-value=65 Score=31.28 Aligned_cols=148 Identities=9% Similarity=0.118 Sum_probs=73.6
Q ss_pred cHHHHHhccCcCCCCEEEEcCCC-----CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcc
Q 010449 194 DKEDILRWGVPNNIDMIALSFVR-----KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDL 267 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~-----sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDL 267 (510)
|...+.+...+.|+|.+.+.-.. ...+...+++..+..+..+.+-.-|-+++-++ ++++. +|.+++|+.=|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~---~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIE---RLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECchHH
Confidence 33344345567899988776322 33344455554443333344445666655544 44433 79999987544
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCC-CeEEehhhhHh--hhcC-CCCChHhHHHHHH-HHHcCCceEEeccCCCCCCCHH
Q 010449 268 GMEIPVEKIFLAQKMMIYKCNLVGK-PVVTATQMLES--MIKS-PRPTRAEATDVAN-AVLDGTDCVMLSGESAAGAYPE 342 (510)
Q Consensus 268 g~e~~~~~v~~~qk~ii~~~~~~gk-pvivaTqmLeS--M~~~-~~PtraEv~Dv~~-av~~G~D~imLs~Eta~G~yP~ 342 (510)
. + |...+++ +++.|+ +++++--+-.+ +... ...+.-+..+.+. .-..|+|.+.+.+-+..|.+.-
T Consensus 107 ~------d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g 176 (234)
T cd04732 107 K------N-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG 176 (234)
T ss_pred h------C-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC
Confidence 2 1 2233333 345566 55554211100 0000 0011122334444 4456899999987777666544
Q ss_pred HHHHHHHHHHHH
Q 010449 343 IAVKIMRRICIE 354 (510)
Q Consensus 343 ~~V~~m~~i~~~ 354 (510)
.-.+.+.++++.
T Consensus 177 ~~~~~i~~i~~~ 188 (234)
T cd04732 177 PNFELYKELAAA 188 (234)
T ss_pred CCHHHHHHHHHh
Confidence 334555555543
No 255
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=58.86 E-value=2.1e+02 Score=29.12 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=53.2
Q ss_pred CceEEEEe--cCHHHHhchHHHHhh----cCeeEEeCCc-----ccCCCCchhHHHHHHHHHHHHHHc-CCCeEEehhhh
Q 010449 234 NIQLMSKV--ENQEGVVNFDDILRE----TDSFMVARGD-----LGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTATQML 301 (510)
Q Consensus 234 ~~~IiakI--Et~~av~nldeI~~~----~DgI~IgrgD-----Lg~e~~~~~v~~~qk~ii~~~~~~-gkpvivaTqmL 301 (510)
+..++++| .+++.+..+-+.++. +|+|=+.=|= -|.+++ .-+..-.+++++.+++ ++|+.+=.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi--- 164 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIG--QDPELSADVVKAVKDKTDVPVFAKL--- 164 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccc--cCHHHHHHHHHHHHHhcCCCEEEEC---
Confidence 45799999 566666555555542 5777664110 011111 2233446777777764 88988732
Q ss_pred HhhhcCCCCChHhHHHHHH-HHHcCCceEEecc
Q 010449 302 ESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 333 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~ 333 (510)
.|+-.|..+++. +...|+|++.+++
T Consensus 165 -------~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 165 -------SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred -------CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 355566777776 4568999999875
No 256
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.82 E-value=27 Score=35.62 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH--HhchHHHHhh-cCeeEEe
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVA 263 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~DgI~Ig 263 (510)
.+.. ..++++|+|+|.+-.. +.++++++.+++.....++.+.| --+ .+|+.++++. +|+|.+|
T Consensus 192 leea-~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 192 LEEA-KNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA----SGNITLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 3455 5678899999999876 88888888887654334544333 233 3567777776 7999998
No 257
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=58.52 E-value=46 Score=33.64 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=69.9
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeE--EeCCcccCCCCc-hhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFM--VARGDLGMEIPV-EKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~--IgrgDLg~e~~~-~~v 276 (510)
+.+.+.|+|++++|=.- .++.+++.+.+++.| +..|..+=...--+.+..|++.++|.+ +++ .|+ .|. ...
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g--l~~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~~~ 184 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG--LDLIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARSAD 184 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcccCC
Confidence 66788999999999663 578888888777655 444443432233567888999988765 454 332 222 122
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 277 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 277 ~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+.-....++.++++ ++|+++-.- .=++.++ ..+.. ++|++...
T Consensus 185 ~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e~v---~~~~~-~ADGviVG 228 (258)
T PRK13111 185 AADLAELVARLKAHTDLPVAVGFG---------ISTPEQA---AAIAA-VADGVIVG 228 (258)
T ss_pred CccHHHHHHHHHhcCCCcEEEEcc---------cCCHHHH---HHHHH-hCCEEEEc
Confidence 33344555555554 899987433 3344444 44333 59998885
No 258
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.51 E-value=1.5e+02 Score=31.21 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHH
Q 010449 264 RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEI 343 (510)
Q Consensus 264 rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~ 343 (510)
+...|.-.|+. =|+..+.+++. ...||++.- ..-|. +|++.|++.|+|++++..=-+..+.|+.
T Consensus 226 ~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdA---------GIg~~---sda~~AmelGadgVL~nSaIa~a~dPv~ 289 (326)
T PRK11840 226 GAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDA---------GVGTA---SDAAVAMELGCDGVLMNTAIAEAKNPVL 289 (326)
T ss_pred cccccCCCCCC-CHHHHHHHHHc---CCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEEEcceeccCCCHHH
Confidence 34444444444 23444444444 568888742 23333 6889999999999999988899999988
Q ss_pred HHHHHHHHHHH
Q 010449 344 AVKIMRRICIE 354 (510)
Q Consensus 344 ~V~~m~~i~~~ 354 (510)
--+.|+.-++.
T Consensus 290 Ma~A~~~av~a 300 (326)
T PRK11840 290 MARAMKLAVEA 300 (326)
T ss_pred HHHHHHHHHHH
Confidence 77777665544
No 259
>PLN03013 cysteine synthase
Probab=58.36 E-value=1.3e+02 Score=32.88 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchH
Q 010449 283 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362 (510)
Q Consensus 283 ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 362 (510)
+...|+.+|.|+++. .|..+....+...-..|++.+..... .| -..+++...+++++....+ +.
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~--~~~a~~~A~ela~~~~g~~-~~ 253 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG--MTGAVQKAEEILKNTPDAY-ML 253 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC--hHHHHHHHHHHHhhcCCeE-eC
Confidence 345789999999874 35555555556666789998876432 12 2245566666554422222 11
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~--~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
..| ..|..+..-....+.++.+++ +.+++|+..-+|-+..-+++ .+|.+.|+++
T Consensus 254 ~qy-------~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 254 QQF-------DNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred CCC-------CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 111 011111111223345566665 47999999999987655555 5799999999
No 260
>PRK14057 epimerase; Provisional
Probab=58.28 E-value=1.7e+02 Score=29.64 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=76.0
Q ss_pred CcCCCCEEEEcCCCCHHHHHHHHHHhccCCC---------CceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCc
Q 010449 203 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAK---------NIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV 273 (510)
Q Consensus 203 ~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~---------~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~ 273 (510)
.+.|+|+|.+ +++...++.+.-+.+++.|. ..-+.-+-+| -++.++.++...|.|++= +++-|+
T Consensus 95 ~~aGad~It~-H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLvM----tV~PGf 167 (254)
T PRK14057 95 VKAGAHCITL-QAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQLL----AVNPGY 167 (254)
T ss_pred HHhCCCEEEE-eeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEEE----EECCCC
Confidence 6689998875 56666677777677777664 3556667777 567799999999988873 333332
Q ss_pred ---hhHHHHHHHHHHHH---HHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC--CCCHHHHH
Q 010449 274 ---EKIFLAQKMMIYKC---NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA--GAYPEIAV 345 (510)
Q Consensus 274 ---~~v~~~qk~ii~~~---~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~--G~yP~~~V 345 (510)
.-.+..-++|.+.. .++|..+.+. +... =+. .-+...+..|+|.+++. |++ ...+.+++
T Consensus 168 gGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~ti~~l~~aGad~~V~G--SalF~~~d~~~~i 234 (254)
T PRK14057 168 GSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDGS-LTQ---DQLPSLIAQGIDRVVSG--SALFRDDRLVENT 234 (254)
T ss_pred CchhccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHHHHH
Confidence 12222333333222 2344333220 1111 111 23345677899998886 333 23577787
Q ss_pred HHHHHHHH
Q 010449 346 KIMRRICI 353 (510)
Q Consensus 346 ~~m~~i~~ 353 (510)
+.++++..
T Consensus 235 ~~l~~~~~ 242 (254)
T PRK14057 235 RSWRAMFK 242 (254)
T ss_pred HHHHHHHh
Confidence 77776543
No 261
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=58.21 E-value=2.1e+02 Score=28.97 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=90.3
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCC---------CCHHHHHHHHHHhccCCCCceEEE--EecCHHH--------Hh-
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFV---------RKGSDLVNVRKVLGPHAKNIQLMS--KVENQEG--------VV- 248 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV---------~sa~dv~~vr~~l~~~~~~~~Iia--kIEt~~a--------v~- 248 (510)
.++..++..+.....+.|+|.|=+-+- -+.++.+.++.+.+. ..+.++.+ .-.+.-+ .+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCCcHHHHH
Confidence 356777777756677789998855441 244555555444322 22333332 2211111 11
Q ss_pred chHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCC
Q 010449 249 NFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGT 326 (510)
Q Consensus 249 nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~ 326 (510)
.++...+. .|.|-|. .+..++ ..-+..++.++++|+-+.++ .+|...++.+.+.+.+++. +...|+
T Consensus 96 di~~~~~~g~~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 96 FVEKAAKNGIDIFRIF-------DALNDV-RNLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred HHHHHHHcCCCEEEEe-------ecCChH-HHHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 12222222 3655552 233333 23456778889999876542 1334556778888888776 456699
Q ss_pred ceEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 327 DCVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 327 D~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
|.+.|. +|.=...|.+.-++++.+.++.
T Consensus 164 ~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 164 DSICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred CEEEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 999998 8887888999988888877554
No 262
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=58.17 E-value=1.6e+02 Score=31.05 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+.-..+...-..|++.++. + ...-++.+...+++.+-. ..|
T Consensus 62 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~--~~~ 122 (380)
T TIGR01127 62 GVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG--RVF 122 (380)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC--CEe
Confidence 4566899999999764 24444444566677789987754 2 235577777777655422 222
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
-..|. .+ .....-...+.++.+++ +.++||+..-+|.++.-+++ ++|...|+++
T Consensus 123 ~~~~~-------~~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigV 181 (380)
T TIGR01127 123 VHPFD-------DE-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGV 181 (380)
T ss_pred cCCCC-------Ch-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 11122233455666666 57999999999998665554 5799999999
No 263
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=58.13 E-value=1.8e+02 Score=28.79 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=67.3
Q ss_pred HHHHHhccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEEecC---------------------HHHHhchH
Q 010449 195 KEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVEN---------------------QEGVVNFD 251 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~IiakIEt---------------------~~av~nld 251 (510)
.+++ +..++.|++.|++.- .++++.+.++.+.+. .+ +++.-+.- ...++-++
T Consensus 86 ~~~~-~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g---~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 86 VEDA-RRLLRAGADKVSINSAAVANPELISEAADRFG---SQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred HHHH-HHHHHcCCCEEEEChhHhhCcHHHHHHHHHcC---CC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 3455 344567899887763 456677777766552 11 22222211 11122223
Q ss_pred HHHhh-cCeeEEeCCc-ccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH-cCCce
Q 010449 252 DILRE-TDSFMVARGD-LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDC 328 (510)
Q Consensus 252 eI~~~-~DgI~IgrgD-Lg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~-~G~D~ 328 (510)
++.+. +|++++-.-+ =|..-++ ++ ..+-+.++..+.|+|.+.-+. ...|+..+.. .|+|+
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGADA 223 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCccE
Confidence 33333 5777663211 1122222 21 223333455689999876543 3456666665 59999
Q ss_pred EEeccCCCCCCCHHHHH
Q 010449 329 VMLSGESAAGAYPEIAV 345 (510)
Q Consensus 329 imLs~Eta~G~yP~~~V 345 (510)
+|.+.==..|.++.+-+
T Consensus 224 vivg~al~~~~~~~~~~ 240 (253)
T PRK02083 224 ALAASIFHFGEITIGEL 240 (253)
T ss_pred EeEhHHHHcCCCCHHHH
Confidence 99974444677776543
No 264
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=58.08 E-value=91 Score=31.59 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=58.8
Q ss_pred HHHHhh-cCeeEEe-CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCc
Q 010449 251 DDILRE-TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTD 327 (510)
Q Consensus 251 deI~~~-~DgI~Ig-rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D 327 (510)
+.+++. .||+++. -.=-+..+..++-..+.+..++.++ -..|+++-+ ...+-.|..+.+. |...|+|
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCCC
Confidence 343443 6999984 2112244555555555555555442 236776532 2334455555554 7788999
Q ss_pred eEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 328 CVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 328 ~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
++|+..=.....-+.+.++....|+..++-
T Consensus 96 ~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 96 GFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred EEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 999987665544467788999999888753
No 265
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=57.99 E-value=20 Score=37.56 Aligned_cols=48 Identities=8% Similarity=0.197 Sum_probs=41.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAG--MNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G--~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
-..+++|-..++.+.+.+|+++| .|+.=++.|||......+.++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888878889999999999 6999999999999987777777776
No 266
>PRK09224 threonine dehydratase; Reviewed
Probab=57.65 E-value=1.8e+02 Score=32.37 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+..+|+..|.|+.+- .|..+.-..+...-..|++.++.. ...-++.+...++.++ +.. .|
T Consensus 82 avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~-~~ 142 (504)
T PRK09224 82 GVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGL-TF 142 (504)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCC-EE
Confidence 4566899999998763 233333344555667899876653 2346777777666544 222 22
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLV----AKYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~i----Sr~RP~~PIiav 423 (510)
-..|. .| .....-..-+.++.++++ .+.||+..-+|.++.-+ ..++|...|+++
T Consensus 143 v~~f~-------~~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigV 202 (504)
T PRK09224 143 IHPFD-------DP-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGV 202 (504)
T ss_pred eCCCC-------Cc-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 112223344567777774 68999999999875554 457899999999
No 267
>PRK07476 eutB threonine dehydratase; Provisional
Probab=57.51 E-value=1.9e+02 Score=29.84 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+...|++.|.|+.+. .|..+.-..+...-..|++-+... + ...++++...+++++- .. .|
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~-~~ 141 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GL-TM 141 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CC-EE
Confidence 4566899999998773 243333445566667899976553 2 2456777766665432 22 22
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
-..| ..|. ..+.....+.++.+++ +.++||+.+-+|.++.-+++ +.|...|+++
T Consensus 142 ~~~~-------~n~~-~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigV 200 (322)
T PRK07476 142 VPPF-------DDPR-IIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200 (322)
T ss_pred eCCC-------CCcc-eeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 1121 1223345566777766 46889999999998555444 6799999999
No 268
>PLN02417 dihydrodipicolinate synthase
Probab=57.39 E-value=53 Score=33.33 Aligned_cols=95 Identities=7% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHhccCcCCCCEEEEcCC------CCHHHHHHH-HHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeCC
Q 010449 197 DILRWGVPNNIDMIALSFV------RKGSDLVNV-RKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARG 265 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV------~sa~dv~~v-r~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igrg 265 (510)
.+.++.++.|+++|++.-- -|.++=.++ +..++..+..+.|++-+= |.++++....-.+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3337889999999987422 233333333 333444456788988884 56666666655544 699999877
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
...- .+.+.+...-+.+.++ . |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 6532 3445665555666553 3 88764
No 269
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=57.21 E-value=57 Score=34.24 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCEEEEcCC----------CCHHHHHHHHHHhccCCC----CceEEEEecCHHHHhchHHHHhh-----cCeeEEeCCc
Q 010449 206 NIDMIALSFV----------RKGSDLVNVRKVLGPHAK----NIQLMSKVENQEGVVNFDDILRE-----TDSFMVARGD 266 (510)
Q Consensus 206 g~d~I~~sfV----------~sa~dv~~vr~~l~~~~~----~~~IiakIEt~~av~nldeI~~~-----~DgI~IgrgD 266 (510)
++|++-+.|- +..+.+.++-+.+++.-. ++.|++||----..+++.++++. +|||.+.-+-
T Consensus 169 ~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 169 YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 5999887652 233444444333332211 48999999632222235555543 5888875321
Q ss_pred -----ccC-----CC-C---chhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEE
Q 010449 267 -----LGM-----EI-P---VEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 330 (510)
Q Consensus 267 -----Lg~-----e~-~---~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~im 330 (510)
+.. .. + .+.-+...+.+-...++. +.|+|-...+. ...|+..++..|||+|+
T Consensus 249 ~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 249 LSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGASLVQ 316 (344)
T ss_pred cccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCCHHH
Confidence 110 01 1 122233444444444554 57888765544 34677888889999999
Q ss_pred eccC
Q 010449 331 LSGE 334 (510)
Q Consensus 331 Ls~E 334 (510)
+..-
T Consensus 317 v~~~ 320 (344)
T PRK05286 317 IYSG 320 (344)
T ss_pred HHHH
Confidence 9743
No 270
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.16 E-value=30 Score=38.47 Aligned_cols=51 Identities=25% Similarity=0.415 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 20 PKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 20 ~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
.|-..=|.+|+.-+..|-.++|+++|+|+.=++.+||...+..+.|+.||+
T Consensus 235 ~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 235 GKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345566678988788999999999999999999999998887778888886
No 271
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=57.16 E-value=1.9e+02 Score=28.76 Aligned_cols=129 Identities=15% Similarity=0.086 Sum_probs=74.9
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC--CceEEEEecCHHHHhchHHHHhhcCeeEEe---CCcccCCCCc---
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK--NIQLMSKVENQEGVVNFDDILRETDSFMVA---RGDLGMEIPV--- 273 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~--~~~IiakIEt~~av~nldeI~~~~DgI~Ig---rgDLg~e~~~--- 273 (510)
..+.|+|.|.+. +++..++.+.-+.+++.|. ..-+.-+=+| -++.++.++...|.|+|= ||==|..+-.
T Consensus 87 ~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l 163 (228)
T PRK08091 87 CVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQILTLDPRTGTKAPSDLIL 163 (228)
T ss_pred HHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEEEEECCCCCCccccHHHH
Confidence 367899988865 5656677777788888887 6667777777 567899999999988873 2222222211
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC-C-CCHHHHHHHHHH
Q 010449 274 EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA-G-AYPEIAVKIMRR 350 (510)
Q Consensus 274 ~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~-G-~yP~~~V~~m~~ 350 (510)
+++.++.+.+ .++|.-+.+. +... =+. .-+......|+|.+++. |++ | ..|.+.++.++.
T Consensus 164 ~KI~~lr~~~----~~~~~~~~Ie-------VDGG-I~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 164 DRVIQVENRL----GNRRVEKLIS-------IDGS-MTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTLKEWKS 225 (228)
T ss_pred HHHHHHHHHH----HhcCCCceEE-------EECC-CCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHHHHHH
Confidence 1222222222 2344332211 0111 111 12345677899998886 333 2 246777776654
No 272
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=56.96 E-value=52 Score=33.01 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=53.4
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+..+|---.-.|.-.|+..- ..-+.|+ .+...|||+- ...-+. +|++.|.+.|+|++++..--|
T Consensus 145 caavMPlgsPIGSg~Gi~n~-~~l~~i~---~~~~vPvIvD---------AGiG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNP-YNLRIII---ERADVPVIVD---------AGIGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SSTH-HHHHHHH---HHGSSSBEEE---------S---SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCCH-HHHHHHH---HhcCCcEEEe---------CCCCCH---HHHHHHHHcCCceeehhhHHh
Confidence 45677655556666666553 3334443 3449999983 223333 577999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 010449 337 AGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 337 ~G~yP~~~V~~m~~i~~~a 355 (510)
..+.|+.-.+.|+.-++.-
T Consensus 209 ~A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999988888887755443
No 273
>PRK06382 threonine dehydratase; Provisional
Probab=56.96 E-value=1.5e+02 Score=31.88 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchH
Q 010449 283 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362 (510)
Q Consensus 283 ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 362 (510)
+..+|+..|.|+.+. .|..+-...+...-..|++-+. .++ ..-++.+...++.++ +.. .|-
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~-~~~-----~~~~a~~~a~~la~~-~~~-~~v 148 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVIL-TGR-----DYDEAHRYADKIAMD-ENR-TFI 148 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEE-ECC-----CHHHHHHHHHHHHHh-cCC-Eec
Confidence 567899999999774 2444433444455678998764 332 345666666666543 222 221
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKAR-AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
..|. .+ ...+.-...+.++.++++ .++||+..-+|.++.-+++ ..|.+.|+++
T Consensus 149 ~~~~-------~~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigV 206 (406)
T PRK06382 149 EAFN-------DR-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206 (406)
T ss_pred CccC-------Ch-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 11 122333445667777764 6999999999998766655 4899999999
No 274
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=56.42 E-value=97 Score=31.42 Aligned_cols=113 Identities=16% Similarity=0.355 Sum_probs=71.4
Q ss_pred HHHHhccCcCCCCEEEE-cCC-----------CCHHHHHHHHHHhccCCCCceEEEEecCHHHH----hchHHHHhh---
Q 010449 196 EDILRWGVPNNIDMIAL-SFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV----VNFDDILRE--- 256 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~-sfV-----------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av----~nldeI~~~--- 256 (510)
..+ ..|...|+|||-+ .|+ .++.++-+.|+.++ .+++|++-|--+.+. ..+++++..
T Consensus 93 aal-~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~---~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 93 AAL-AIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG---SEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred HHH-HHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC---CCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 355 5677789999988 554 35566667777765 578999888544443 456776662
Q ss_pred ---cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 257 ---TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 257 ---~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+||+++.----|.+..++.+..+.+ ..-..|+++++-+= .. .+..++.. +|++..+
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGvt----------~e---Nv~e~l~~-adGviVg 227 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGVN----------LE---NVEELLSI-ADGVIVA 227 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCCC----------HH---HHHHHHhh-CCEEEEC
Confidence 6999998655666666655543322 12357999987532 22 23344433 8888875
No 275
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=56.29 E-value=1.8e+02 Score=28.01 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=61.0
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCC----------------CCHHHHHHHHHHhccCCCCceEEEEecC----H-HHHhch
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFV----------------RKGSDLVNVRKVLGPHAKNIQLMSKVEN----Q-EGVVNF 250 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV----------------~sa~dv~~vr~~l~~~~~~~~IiakIEt----~-~av~nl 250 (510)
+.+.....+.+.+.|+|+|=+.+- ++.+-+.++-+.+++.- ...+..|+-. . +.++-+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHHH
Confidence 334444435666779999977532 35554545444443321 2567777631 1 222223
Q ss_pred HHHHhh-cCeeEEeCCcccC-CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc-CCc
Q 010449 251 DDILRE-TDSFMVARGDLGM-EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTD 327 (510)
Q Consensus 251 deI~~~-~DgI~IgrgDLg~-e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D 327 (510)
..+.+. .|+|.+..+.-.. ..+...+.. +-..++..+.|++.... .-+. .|+..++.. |+|
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Gg---------i~~~---~d~~~~l~~~gad 208 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGD---------IFSL---EDALRCLEQTGVD 208 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCC---------CCCH---HHHHHHHHhcCCC
Confidence 333322 4777665331100 111112222 11222345788887433 2333 355566666 899
Q ss_pred eEEec
Q 010449 328 CVMLS 332 (510)
Q Consensus 328 ~imLs 332 (510)
++|+.
T Consensus 209 ~V~ig 213 (231)
T cd02801 209 GVMIG 213 (231)
T ss_pred EEEEc
Confidence 99997
No 276
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=56.28 E-value=1.9e+02 Score=27.88 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=65.0
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEE---E-ecCHH-----HHhchHHHHhh-cCeeEEe
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMS---K-VENQE-----GVVNFDDILRE-TDSFMVA 263 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iia---k-IEt~~-----av~nldeI~~~-~DgI~Ig 263 (510)
+...+.+.+.+.|+..+. +.+.++++.+++.. ++.+++ | .+..+ ..+.++...++ +|.|.+.
T Consensus 28 ~i~~~a~~~~~~G~~~~~---~~~~~~~~~i~~~~-----~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 28 IMAAMALAAVQGGAVGIR---ANGVEDIRAIRARV-----DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHHHCCCeEEE---cCCHHHHHHHHHhC-----CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 444554667888998654 48899999998752 344442 1 11101 12345555544 6877775
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 264 RGDLGMEIPVEKIFLAQKMMIYKCNLVG-KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 264 rgDLg~e~~~~~v~~~qk~ii~~~~~~g-kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-.++.. +.. ..-++++++++++| .|+++. ..|.+| ...+...|+|.+..+
T Consensus 100 ~~~~~~--p~~---~~~~~~i~~~~~~g~~~iiv~-----------v~t~~e---a~~a~~~G~d~i~~~ 150 (219)
T cd04729 100 ATDRPR--PDG---ETLAELIKRIHEEYNCLLMAD-----------ISTLEE---ALNAAKLGFDIIGTT 150 (219)
T ss_pred CCCCCC--CCC---cCHHHHHHHHHHHhCCeEEEE-----------CCCHHH---HHHHHHcCCCEEEcc
Confidence 433321 110 13346777888888 777763 234444 366777899998653
No 277
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=56.27 E-value=1.7e+02 Score=28.62 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=90.9
Q ss_pred CcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCc--hh-HHHH
Q 010449 203 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV--EK-IFLA 279 (510)
Q Consensus 203 ~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~--~~-v~~~ 279 (510)
.+.|++.+.+ +++-.++..++.+.++++|-...+--|=+| .|+.++..++..|-++|= +++=|+ ++ ++..
T Consensus 84 a~agas~~tf-H~E~~q~~~~lv~~ir~~Gmk~G~alkPgT--~Ve~~~~~~~~~D~vLvM----tVePGFGGQkFme~m 156 (224)
T KOG3111|consen 84 AKAGASLFTF-HYEATQKPAELVEKIREKGMKVGLALKPGT--PVEDLEPLAEHVDMVLVM----TVEPGFGGQKFMEDM 156 (224)
T ss_pred HhcCcceEEE-EEeeccCHHHHHHHHHHcCCeeeEEeCCCC--cHHHHHHhhccccEEEEE----EecCCCchhhhHHHH
Confidence 4578997664 456667788888899988877777777777 467777777778877762 345444 22 3333
Q ss_pred HHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 280 QKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 280 qk~ii~~~~~~gkpvi-vaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
..++-..-.++..+.| +-.. -.|. -+..+...||++++-..-.---.-|.++++.|++.++.+
T Consensus 157 m~KV~~lR~kyp~l~ievDGG--------v~~~-----ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDGG--------VGPS-----TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKA 220 (224)
T ss_pred HHHHHHHHHhCCCceEEecCC--------cCcc-----hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhh
Confidence 4455444467888887 3221 1233 346677789999988766656678999999999987755
No 278
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=56.23 E-value=49 Score=33.25 Aligned_cols=93 Identities=24% Similarity=0.241 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCceEEecc--CCCCCCC-HHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh
Q 010449 316 TDVANAVLDGTDCVMLSG--ESAAGAY-PEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANK 392 (510)
Q Consensus 316 ~Dv~~av~~G~D~imLs~--Eta~G~y-P~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~ 392 (510)
.|....-.-|+|++|+.. ++..-++ +-+++..|..|.++.-.... .|...+...-=+.+|..+|..
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~-----------iPvGvNVLrNd~vaA~~IA~a 106 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVS-----------IPVGVNVLRNDAVAALAIAYA 106 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhcc-----------ccceeeeeccccHHHHHHHHh
Confidence 333445667999999964 3332222 35889999999876544321 122122222223456677888
Q ss_pred cCCcEE-------EEEcCCchH---HHHHHhhCCCCc
Q 010449 393 ARAKLI-------VVLTRGGTT---AKLVAKYRPAVP 419 (510)
Q Consensus 393 ~~a~aI-------vv~T~sG~t---A~~iSr~RP~~P 419 (510)
.+|+.| +.+|..|-- |..+.|||+..+
T Consensus 107 ~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 107 VGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred cCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 889888 457777753 677777777655
No 279
>PRK08639 threonine dehydratase; Validated
Probab=56.16 E-value=1.9e+02 Score=31.18 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCce--EEeccCCCCCCCHHHHHHHHHHHHHHHhccc
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC--VMLSGESAAGAYPEIAVKIMRRICIEAESSL 359 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~--imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 359 (510)
-+..+|+..|.|+.+. .|..+-...+...-..|++. +.+. |...-++++.-.+++++ +. .
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g-~ 148 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TG-A 148 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cC-C
Confidence 4566899999999773 34444444455666789984 3343 44456676666555443 22 2
Q ss_pred chHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 360 DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR----AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~----a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
.|-..|. .+ ...+.-..-+.++.++++ .++||+..-+|.++.-+++ .+|.+.|+++
T Consensus 149 ~~~~~~~-------~~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigV 212 (420)
T PRK08639 149 TFIPPFD-------DP-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGV 212 (420)
T ss_pred cccCCCC-------Ch-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 2211111 11 111222333666667664 6999999999987655554 5799999999
No 280
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=55.78 E-value=2.6e+02 Score=29.09 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 010449 284 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 363 (510)
Q Consensus 284 i~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~ 363 (510)
...|+..|-++++- .|.........-.-..|+..++... .+.|-..+++-.++++.+...++.+..
T Consensus 78 A~vaa~~Gy~~iiv-----------mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~ 143 (300)
T COG0031 78 AMVAAAKGYRLIIV-----------MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLN 143 (300)
T ss_pred HHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchh
Confidence 34588999998874 2433334444555568999998876 344455666666666666544333322
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhhCCCCcEEEE
Q 010449 364 VFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKL----VAKYRPAVPILSV 423 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~----iSr~RP~~PIiav 423 (510)
.|. +|.++.----..+-++-++++ .+++|+-.-||-|.-- +-..+|.+.|+++
T Consensus 144 Qf~-------NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 144 QFE-------NPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred hcC-------CCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 222 232222112234555555554 8999999999887544 4456799999999
No 281
>PLN00011 cysteine synthase
Probab=55.69 E-value=2.5e+02 Score=29.07 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+.+. .|..+.-..+...-..|++.++-..+ .+ ..+.++...++.++... +++
T Consensus 83 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~-~~~ 146 (323)
T PLN00011 83 GLACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKTPG-GYI 146 (323)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhCCC-eEE
Confidence 3455799999999774 34333334555666789998875532 11 22334444444432111 111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~--~a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
...|. .+.++.--....+.++.+++ ..++||+.+-+|.|..-++ .++|...|+++
T Consensus 147 ~~~~~-------n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigV 207 (323)
T PLN00011 147 PQQFE-------NPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVV 207 (323)
T ss_pred ecccc-------CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 11111 11122111234556666665 4799999999998865444 46899999999
No 282
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=55.62 E-value=52 Score=33.38 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=54.7
Q ss_pred CChhcHHHHHhccCcCC-CCEEEEcCCCCH--HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEe---
Q 010449 190 LTEKDKEDILRWGVPNN-IDMIALSFVRKG--SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVA--- 263 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g-~d~I~~sfV~sa--~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Ig--- 263 (510)
|.+.+.++..+.+...+ +|+|++|-..+. -|...++++-.....-+.++ =+=-..+|+.++++.+||++||
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvll---ggGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLA---GSGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEE---ECCCCHHHHHHHHhhCCEEEECCCc
Confidence 45555555434445555 999999987765 44555554422111123333 3334457999999999999999
Q ss_pred --CCcccCCCCchhHHHHHHHH
Q 010449 264 --RGDLGMEIPVEKIFLAQKMM 283 (510)
Q Consensus 264 --rgDLg~e~~~~~v~~~qk~i 283 (510)
.|+..-....+++...++.+
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVEKV 252 (257)
T ss_pred ccCCccCCCcCHHHHHHHHHHH
Confidence 35544455566666655544
No 283
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=55.57 E-value=1.1e+02 Score=32.66 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=73.4
Q ss_pred ccCcCCCCEEEE---cCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccC------
Q 010449 201 WGVPNNIDMIAL---SFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGM------ 269 (510)
Q Consensus 201 ~a~~~g~d~I~~---sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~------ 269 (510)
..+..|.+.+.- +...+++++.++-+.+++...+..|+.|+=.--..+.+...++. +|+|.|.=++=|.
T Consensus 178 r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~ 257 (392)
T cd02808 178 RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLT 257 (392)
T ss_pred hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc
Confidence 456667776653 34678888887777777765557888898543233344444433 6999998544222
Q ss_pred ---CCCchhHHHHHHHHHHHHHHc----CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 270 ---EIPVEKIFLAQKMMIYKCNLV----GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 270 ---e~~~~~v~~~qk~ii~~~~~~----gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+.+++.+ .....+.+++++. ..|++.+.-+- --.|++.++..|||++.+.
T Consensus 258 ~~~~~g~pt~-~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 258 FIDHVGLPTE-LGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred ccccCCccHH-HHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 1222221 3334455555544 46777765543 2469999999999999885
No 284
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.50 E-value=1.8e+02 Score=28.71 Aligned_cols=119 Identities=9% Similarity=0.027 Sum_probs=70.3
Q ss_pred hccCcCCCCEEEEcC------C--CCHHHHHHHHHHhccCCCCceEEEE--------e------cCHHHHhchHHHHhh-
Q 010449 200 RWGVPNNIDMIALSF------V--RKGSDLVNVRKVLGPHAKNIQLMSK--------V------ENQEGVVNFDDILRE- 256 (510)
Q Consensus 200 ~~a~~~g~d~I~~sf------V--~sa~dv~~vr~~l~~~~~~~~Iiak--------I------Et~~av~nldeI~~~- 256 (510)
+.+.+.|+++|=+.. . -+.++++++++.+.+.|-.+..+.- + +..++++.+...++.
T Consensus 20 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 99 (275)
T PRK09856 20 RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMA 99 (275)
T ss_pred HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 777889999998742 1 2345788899888876543322210 0 112345555555544
Q ss_pred ----cCeeEEeCCcccCCCCc----hhHHHHHHHHHHHHHHcCCCeEEehhhhHhh---hcCCCCChHhHHHHHHHHH
Q 010449 257 ----TDSFMVARGDLGMEIPV----EKIFLAQKMMIYKCNLVGKPVVTATQMLESM---IKSPRPTRAEATDVANAVL 323 (510)
Q Consensus 257 ----~DgI~IgrgDLg~e~~~----~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM---~~~~~PtraEv~Dv~~av~ 323 (510)
++.+.+.+|..+..-.. +.+...-+++...|.++|..+.+ |.| ..+..+|.+++.++.+.+-
T Consensus 100 ~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 100 KEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHHcC
Confidence 46777777655433222 34555567788888888876654 322 1234567777777777653
No 285
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=55.49 E-value=54 Score=33.29 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHhccCcCCCCEEEEcCC-------CCHHHHHHHHHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeCC
Q 010449 197 DILRWGVPNNIDMIALSFV-------RKGSDLVNVRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARG 265 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV-------~sa~dv~~vr~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igrg 265 (510)
.+.++.++.|+++|++.-- ...|-.+-++...+..+.++.|++-+= |.++++.+....+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3337889999999986422 223333333333444445678888884 45555555555444 699999766
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+. ..+.+.+...-+.|++ +.+.|+++.
T Consensus 106 ~~~-~~~~~~i~~~~~~ia~---~~~~pv~lY 133 (292)
T PRK03170 106 YYN-KPTQEGLYQHFKAIAE---ATDLPIILY 133 (292)
T ss_pred cCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 543 2234555555566654 457898874
No 286
>PRK06815 hypothetical protein; Provisional
Probab=55.32 E-value=1.6e+02 Score=30.26 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+..+|+..|.|+.+. .|..+.-..+...-..|++.+...++ ..++.+...+++++- .. .|
T Consensus 82 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~-~~-~~ 142 (317)
T PRK06815 82 GVALAAKLAGIPVTVY-----------APEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ-GK-VY 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc-CC-EE
Confidence 3667899999999774 23333334455666789998888653 345555555554331 11 12
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
...|. .+ ...+.....+.++.+++ +.+.||+..-+|.+..-++ .+.|...|+++
T Consensus 143 ~~~~~-------~~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigV 201 (317)
T PRK06815 143 ISPYN-------DP-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGC 201 (317)
T ss_pred ecCCC-------Ch-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11110 11 11222334566677766 4699999999998765544 46699999999
No 287
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=54.99 E-value=1.4e+02 Score=30.82 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=65.0
Q ss_pred ceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE-ehhh--h-Hhhhc--C
Q 010449 235 IQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT-ATQM--L-ESMIK--S 307 (510)
Q Consensus 235 ~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv-aTqm--L-eSM~~--~ 307 (510)
+.+...+..-.-++.+..-++. .+-+|+. |-++|+++=...-+++++.|+++|.+|=. -.++ - +.... .
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~ 153 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGV 153 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccc
Confidence 6788888777655544444443 4789997 44678888888889999999999998710 0000 0 11000 0
Q ss_pred CCCChHhHHHHHHHHH-cCCceEEeccCCCCCCCH
Q 010449 308 PRPTRAEATDVANAVL-DGTDCVMLSGESAAGAYP 341 (510)
Q Consensus 308 ~~PtraEv~Dv~~av~-~G~D~imLs~Eta~G~yP 341 (510)
..-+. .+...++. -|+|++-.|--|+.|.|+
T Consensus 154 ~yT~p---eeA~~Fv~~TgvD~LAvaiGt~HG~Y~ 185 (285)
T PRK07709 154 IYADP---AECKHLVEATGIDCLAPALGSVHGPYK 185 (285)
T ss_pred cCCCH---HHHHHHHHHhCCCEEEEeecccccCcC
Confidence 11122 33345554 499999999999999994
No 288
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=54.97 E-value=1.3e+02 Score=32.37 Aligned_cols=49 Identities=18% Similarity=0.058 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCC
Q 010449 277 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGES 335 (510)
Q Consensus 277 ~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Et 335 (510)
+..-++++..++++ .+|+++ ...|.-.++.+++. +...|+|++.+..=+
T Consensus 167 ~e~~~~i~~~Vk~~~~iPv~v----------KLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 167 CDLLEEVCGWINAKATVPVWA----------KMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHHHhhcCceEE----------EeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 67777888888764 799987 23466666888888 667899999997543
No 289
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=54.80 E-value=7.4 Score=28.19 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.4
Q ss_pred CCeEEEeec-CCCHHHHHHHHHHHH
Q 010449 46 MNVARFNFS-HGTHEYQQETLNNLR 69 (510)
Q Consensus 46 ~~~~RiN~s-h~~~~~~~~~i~~ir 69 (510)
+.+.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678899998 999999888888774
No 290
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=54.76 E-value=34 Score=35.04 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=47.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
.+..-+ .-+.+.+.+++.+++|.+.+-|.-||.+.++..+.-+.+++.++.+|.++
T Consensus 76 pv~lHl-DH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 76 PVAVHF-DHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 444444 33568999999999999999999999999999999999999999888763
No 291
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.50 E-value=84 Score=32.03 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHhccCcCCCCEEEEc------CCCCHHHHHHH-HHHhccCCCCceEEEEecCHHHHhchHHHHhh-----cCeeEE
Q 010449 195 KEDILRWGVPNNIDMIALS------FVRKGSDLVNV-RKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMV 262 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~s------fV~sa~dv~~v-r~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~DgI~I 262 (510)
.+.+.++.++.|+++|++. +.-|.++-.++ +..++..+.++.||+-+- . +.++.-+.++. +|++|+
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEE
Confidence 3333378899999999875 23344444444 334444456788888884 2 34333333332 599999
Q ss_pred eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 263 ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 263 grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+--.. ..+.+.+...-+.+. .+.+.|+++.
T Consensus 101 ~pP~y~-~~~~~~i~~~f~~v~---~~~~~pi~lY 131 (289)
T cd00951 101 LPPYLT-EAPQEGLYAHVEAVC---KSTDLGVIVY 131 (289)
T ss_pred CCCCCC-CCCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 765542 223445555555554 4468998875
No 292
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=54.38 E-value=56 Score=31.46 Aligned_cols=65 Identities=6% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
++.+++.+++.|+++.+-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|+++|+|.+.+
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4556677777777777665555443 4566777778988876433 346677888999999999765
No 293
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=54.18 E-value=1e+02 Score=31.34 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHHHHhccCc-CCCCEEEEcC------CCCHHHHHHH-HHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEE
Q 010449 195 KEDILRWGVP-NNIDMIALSF------VRKGSDLVNV-RKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMV 262 (510)
Q Consensus 195 ~~di~~~a~~-~g~d~I~~sf------V~sa~dv~~v-r~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~I 262 (510)
.+.+.++.++ .|+++|++.= .=|.++-.++ +..++..+.++.||+.+- |.++++......+. +|++++
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3333378899 9999998642 2233343333 334444456788999994 56666666665554 799999
Q ss_pred eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 263 ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 263 grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+..+-- ...+.+...-+.+ |.+.+.|+++.
T Consensus 106 ~~P~y~~-~~~~~l~~~f~~v---a~a~~lPv~iY 136 (293)
T PRK04147 106 VTPFYYP-FSFEEICDYYREI---IDSADNPMIVY 136 (293)
T ss_pred eCCcCCC-CCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 8755421 2223444444444 55567898874
No 294
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=54.15 E-value=53 Score=31.65 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCChHhHHHHHHHHHcCCceEEeccCCC---CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHH
Q 010449 308 PRPTRAEATDVANAVLDGTDCVMLSGESA---AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLAS 384 (510)
Q Consensus 308 ~~PtraEv~Dv~~av~~G~D~imLs~Eta---~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 384 (510)
..++..-+..+..|+.+|||.+-..---. .|.| -+..+.+..+++++.. ...+-.++ ....+ +..-.
T Consensus 65 ~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g-~~lkvI~e------~~~l~--~~~i~ 134 (203)
T cd00959 65 ATTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGG-APLKVILE------TGLLT--DEEII 134 (203)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCC-CeEEEEEe------cCCCC--HHHHH
Confidence 35566677889999999999988754322 2333 5567777777776652 11100000 01111 33456
Q ss_pred HHHHHHHhcCCcEEEEEcCCchH--------HHHHHhh-CCCCcEEEE
Q 010449 385 SAVRTANKARAKLIVVLTRGGTT--------AKLVAKY-RPAVPILSV 423 (510)
Q Consensus 385 ~av~~A~~~~a~aIvv~T~sG~t--------A~~iSr~-RP~~PIiav 423 (510)
.++++|.+.+|+ ++=|.+|.+ ++.+++. +.++||.+-
T Consensus 135 ~a~ria~e~GaD--~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 135 KACEIAIEAGAD--FIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred HHHHHHHHhCCC--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 778899999999 566667754 2444443 345677666
No 295
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.65 E-value=1.1e+02 Score=30.96 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=59.2
Q ss_pred chHHHHhh-cCeeEEeC--CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHc
Q 010449 249 NFDDILRE-TDSFMVAR--GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLD 324 (510)
Q Consensus 249 nldeI~~~-~DgI~Igr--gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~ 324 (510)
+++-.++. .||++++- |+ +..+..++-..+.+.+++.++ -..|+++-+. ..+-.|+.+.+. |...
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE-~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGE-FYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------ANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTT-GGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------chhHHHHHHHHHHHhhc
Confidence 34445544 79999962 22 233444454444444444332 3457765432 334555655554 7788
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
|+|++|+..=--...-+.+.+++.+.|+..++.
T Consensus 96 Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp T-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred CceEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 999999976655556688889999999977664
No 296
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=53.64 E-value=50 Score=31.76 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHH-HhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEG-VVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~a-v~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-++.+++.+++.|+++.|.+.-|.... .++.+++++..|.|+.+-.+ ......+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 344566777777888888776665532 45677888888988876322 345667889999999999875
No 297
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.31 E-value=1.7e+02 Score=28.63 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=62.8
Q ss_pred cHHHHHhccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEEecCH---------------HHHhchHHHHhh
Q 010449 194 DKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVENQ---------------EGVVNFDDILRE 256 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~IiakIEt~---------------~av~nldeI~~~ 256 (510)
+.+++ +.+++.|+|.|.+.- .++++-+.++.+.+. .+ .|+.-|... .-++-+..+.+.
T Consensus 87 ~~~~~-~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g---~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 87 SAEDA-ASLLDLGVDRVILGTAAVENPEIVRELSEEFG---SE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred CHHHH-HHHHHcCCCEEEEChHHhhChHHHHHHHHHhC---CC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 45566 566788999988764 233444555555442 11 233333210 112222222222
Q ss_pred -cCeeEEeCCcc-cCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccC
Q 010449 257 -TDSFMVARGDL-GMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGE 334 (510)
Q Consensus 257 -~DgI~IgrgDL-g~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~E 334 (510)
+|.+++---+- |..-+ ..+. .+-+.++....|++.+..+ -+.. |+......|+|++++..-
T Consensus 162 G~~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GGI---------~~~~---di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGGV---------TTLD---DLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CCCEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCCC---------CCHH---HHHHHHHcCCCEEEEEHH
Confidence 47777642111 11111 1211 2333345567999986553 3334 444456679999999755
Q ss_pred CCCCCCH
Q 010449 335 SAAGAYP 341 (510)
Q Consensus 335 ta~G~yP 341 (510)
-..|.++
T Consensus 225 ~~~~~~~ 231 (241)
T PRK13585 225 LYKGKFT 231 (241)
T ss_pred HhcCCcC
Confidence 5555544
No 298
>PRK08198 threonine dehydratase; Provisional
Probab=53.29 E-value=2.6e+02 Score=29.84 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|.......+...-..|++.+... + . .-++++...+.+++ +.+ .|
T Consensus 84 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~-~~ 144 (404)
T PRK08198 84 GVAYAASLLGIKATIV-----------MPETAPLSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGA-TF 144 (404)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCC-Ee
Confidence 4456799999999774 233333334555666899887653 2 2 35677666666544 222 22
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
-..|. .+ ...+.-...+.++.+++ +.++||+..-+|.+..-++ .+.|...|+++
T Consensus 145 ~~~~~-------~~-~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigV 203 (404)
T PRK08198 145 VHPFD-------DP-DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGV 203 (404)
T ss_pred cCCCC-------Cc-cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 11223334566666666 4688999999998755444 46899999999
No 299
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=52.95 E-value=2e+02 Score=27.02 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=71.1
Q ss_pred hccCcCCCCEEEE-----cCCCCH----HHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccC
Q 010449 200 RWGVPNNIDMIAL-----SFVRKG----SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGM 269 (510)
Q Consensus 200 ~~a~~~g~d~I~~-----sfV~sa----~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~ 269 (510)
+.+.+.|+++|-+ +|+... +.++++++.. +....+.-++.++. +.++.+.+. +||+.+--+
T Consensus 19 ~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh~~---- 89 (211)
T cd00429 19 KRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENPE--RYIEAFAKAGADIITFHAE---- 89 (211)
T ss_pred HHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCHH--HHHHHHHHcCCCEEEECcc----
Confidence 7788999999998 776443 5556665543 12222445665553 336666655 699877311
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEecc--CCCCC-CCHHHHHH
Q 010449 270 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSG--ESAAG-AYPEIAVK 346 (510)
Q Consensus 270 e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~--Eta~G-~yP~~~V~ 346 (510)
.. ....+.++.++++|..+++.+. |+.. . +....+..++|.+++.+ .+..| .+|....+
T Consensus 90 ---~~---~~~~~~~~~~~~~~~~~g~~~~----------~~~~-~-~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 151 (211)
T cd00429 90 ---AT---DHLHRTIQLIKELGMKAGVALN----------PGTP-V-EVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLE 151 (211)
T ss_pred ---ch---hhHHHHHHHHHHCCCeEEEEec----------CCCC-H-HHHHHHHhhCCEEEEEEECCCCCCcccCHHHHH
Confidence 11 1123458888899988887532 2111 1 11233345588876643 13233 56666666
Q ss_pred HHHHHHH
Q 010449 347 IMRRICI 353 (510)
Q Consensus 347 ~m~~i~~ 353 (510)
.++++.+
T Consensus 152 ~i~~~~~ 158 (211)
T cd00429 152 KIRKLRE 158 (211)
T ss_pred HHHHHHH
Confidence 6666543
No 300
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.77 E-value=1.4e+02 Score=29.11 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=67.4
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccC
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGM 269 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~ 269 (510)
+..+...+.+.+++.|+..+=+.+ +++...+.++.+..+.+.. ++.=.=|.--.++++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 445555555677778888888874 6666666666655444322 22222233333455555554 5666653
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 270 EIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 270 e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
..-..++++|+..|.|++.-+. | .+++..|...|+|.+.+
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G~~-----------t---~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPGVA-----------T---PTEAFAALRAGAQALKL 130 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcccC-----------C---HHHHHHHHHcCCCEEEE
Confidence 2334678889999999886422 2 24567888899999987
No 301
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=52.72 E-value=38 Score=28.48 Aligned_cols=43 Identities=33% Similarity=0.536 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 010449 380 ESLASSAVRTANKARAKLIVVLTRG---------GTTAKLVAKYRPAVPILSV 423 (510)
Q Consensus 380 ~~ia~~av~~A~~~~a~aIvv~T~s---------G~tA~~iSr~RP~~PIiav 423 (510)
...+...++.+.+.++++||+-++. |.++..+.+.-| |||+.+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 4567778889999999999998877 678888888655 899987
No 302
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.65 E-value=74 Score=32.70 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=62.0
Q ss_pred CceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe-EEehhhh---Hhhhc--
Q 010449 234 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV-VTATQML---ESMIK-- 306 (510)
Q Consensus 234 ~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv-ivaTqmL---eSM~~-- 306 (510)
++.+...+....-++.+.+-++. .+.+|+. |-++|+++=...-+++++.|+.+|.+| .=-.++- +....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 45666666655433333333332 5799995 245788777777899999999999998 1111110 01000
Q ss_pred CCCCChHhHHHHHHHH-HcCCceEEeccCCCCCCCH
Q 010449 307 SPRPTRAEATDVANAV-LDGTDCVMLSGESAAGAYP 341 (510)
Q Consensus 307 ~~~PtraEv~Dv~~av-~~G~D~imLs~Eta~G~yP 341 (510)
...-+. .+...++ .-|+|++-.+--|+.|.|+
T Consensus 150 ~~~T~p---e~a~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 150 DCKTEP---EKVKDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred cccCCH---HHHHHHHHHhCcCeeehhccccccCCC
Confidence 011122 3334555 3699999999999999994
No 303
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=52.59 E-value=1.5e+02 Score=31.06 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
+..++.+..+.+..+.+...+....-++.+.+-++. .+-||+. |-++|+++=...-+++++.|+++|..| +-
T Consensus 72 ~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG 147 (321)
T PRK07084 72 AQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMID----GSHLPYEENVALTKKVVEYAHQFDVTVEGELG 147 (321)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEee----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Q ss_pred ehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEeccCCCCCCC--------HHHHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGESAAGAY--------PEIAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imLs~Eta~G~y--------P~~~V~~m~~i~~~a 355 (510)
.-.=.|--.....-......+...++.. |+|++-.+--|+.|.| |.--.+.+++|-..+
T Consensus 148 ~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 148 VLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred eecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
No 304
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=52.48 E-value=1.1e+02 Score=32.81 Aligned_cols=302 Identities=18% Similarity=0.204 Sum_probs=150.9
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHH-HH--HHHHHHH-HHHHHhcCCcEEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHE-YQ--QETLNNL-RAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEIT 110 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~-~~--~~~i~~i-r~~~~~~~~~v~i~~Dl~Gp~iR~g~~~~~~~i~l~~G~~v~ 110 (510)
...|+.|++.|..+.- +||-... .. ..-++.+ +...+.++.+|...-|.-|++.+- .+ -.+++|+.+.
T Consensus 39 lpTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~-~i-----~~l~~G~ilL 110 (389)
T PRK00073 39 LPTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEARE-AI-----AALKDGEVLL 110 (389)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHH-HH-----hcCCCCcEEE
Confidence 5689999999998655 6885422 10 0122222 223345678888877888877663 11 2456677666
Q ss_pred EEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEeeCeEecCCCCcccCCccccCCCC
Q 010449 111 VSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTL 190 (510)
Q Consensus 111 l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v~~~G~l~s~K~vnlp~~~~~lp~l 190 (510)
|-.---..+++ -|.+.|.+.+...--||++|.-= +- ++.. -.+-+...-+|
T Consensus 111 LEN~Rf~~~E~----~~d~~~a~~LA~l~DiyVNDAFg---~a--HR~h------------------aS~vgi~~~lp-- 161 (389)
T PRK00073 111 LENVRFNKGEE----KNDPELAKKLASLGDVFVNDAFG---TA--HRAH------------------ASTVGIAKFLK-- 161 (389)
T ss_pred EeccCcCcccc----cCHHHHHHHHHHhCCEEEECchh---hh--hhcc------------------cchhchhhhCc--
Confidence 54220001111 13345666666655577777221 10 1000 00001110011
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCC-CceEE--EEecCHHHHhchHHHHhhcCeeEEeC---
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAK-NIQLM--SKVENQEGVVNFDDILRETDSFMVAR--- 264 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~-~~~Ii--akIEt~~av~nldeI~~~~DgI~Igr--- 264 (510)
.. .. .+.+ .++++.+.+.+..-.+ -+.|+ ||+.+.-.+ ++.+++.+|.+++|-
T Consensus 162 -~~---~a-G~lm--------------ekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~ma 220 (389)
T PRK00073 162 -PA---AA-GFLM--------------EKELEALGKALENPERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGMA 220 (389)
T ss_pred -hh---hh-hHHH--------------HHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHHH
Confidence 00 00 1111 4577777776653221 12232 577665555 777788899999972
Q ss_pred --------CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 265 --------GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 265 --------gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
.+.|.++--++....-++|+..|++.|+.+++-+... +.+=. .++--.+.-..+-.
T Consensus 221 ~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~v-------------v~~~~---~~~~~~~~~~~~ip 284 (389)
T PRK00073 221 NTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVV-------------VAKEF---SDAEATVVSVDEIP 284 (389)
T ss_pred HHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeE-------------Eeecc---CCCceEEeEcccCC
Confidence 3455554444566677899999999999876422222 11000 01100111111111
Q ss_pred CCCCH----HHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh---cCCcEEEEEcCCchHHH
Q 010449 337 AGAYP----EIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANK---ARAKLIVVLTRGGTTAK 409 (510)
Q Consensus 337 ~G~yP----~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~---~~a~aIvv~T~sG~tA~ 409 (510)
.|.+. -++++...+++..+...+|.-.. ..-..+..+.+...+++. ..|-.|| --|.|+.
T Consensus 285 ~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~----------GvfE~~~F~~GT~~l~~aia~~~a~siv---GGGdt~a 351 (389)
T PRK00073 285 DDWMILDIGPKTIELFAEIIKDAKTIVWNGPM----------GVFEFENFAKGTKAVAKAIAESTAFSII---GGGDTAA 351 (389)
T ss_pred CCCeeeecCHHHHHHHHHHHhhCCEEEEECCC----------CccccccchHHHHHHHHHHHhcCCeEEE---cCCHHHH
Confidence 12221 36888999999999988774211 000111223333332222 2233333 3788999
Q ss_pred HHHhhCCCCcEEEE
Q 010449 410 LVAKYRPAVPILSV 423 (510)
Q Consensus 410 ~iSr~RP~~PIiav 423 (510)
.+.++--.-.+-=+
T Consensus 352 a~~~~g~~~~~shi 365 (389)
T PRK00073 352 AVEKLGLADKFSHI 365 (389)
T ss_pred HHHHcCCCCCccEE
Confidence 99887655554433
No 305
>PRK11761 cysM cysteine synthase B; Provisional
Probab=52.33 E-value=1.7e+02 Score=29.83 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+.+. .|..+.-..+...-..|++.+....+ |.| .++.+...++.++- ..+ |
T Consensus 77 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~-~ 139 (296)
T PRK11761 77 ALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGK-V 139 (296)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCE-e
Confidence 3455789999999774 24333334445555689999888642 333 34444444433321 111 1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHH----HHHHhhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTA----KLVAKYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA----~~iSr~RP~~PIiav 423 (510)
-..|. .+..+..-....+.++.++++ .+.||+.+-+|.+. +.+..++|...|+++
T Consensus 140 ~~~~~-------n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 140 LDQFA-------NPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred cCCCC-------ChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 111111111223456666663 79999999999775 455557899999999
No 306
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=52.26 E-value=50 Score=31.82 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-++.+++.+.+.+.++.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 344555566666666655544333332 4778888888988776322 246778889999999999875
No 307
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.00 E-value=91 Score=32.19 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=56.6
Q ss_pred hccCcCCCCEEEEcC------CCCHHHHHH-HHHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeCCccc
Q 010449 200 RWGVPNNIDMIALSF------VRKGSDLVN-VRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDLG 268 (510)
Q Consensus 200 ~~a~~~g~d~I~~sf------V~sa~dv~~-vr~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~IgrgDLg 268 (510)
++.++.|+++|++.- .=|.++=++ ++...+..+.++.+|+-+= |.++++....-.+. +|++|+-+-..-
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 788899999998632 123333333 3444444556788999883 55666666555554 799998754321
Q ss_pred CCCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 010449 269 MEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 297 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~~-gkpviva 297 (510)
....+.+...-+.| |.+. +.|+++.
T Consensus 116 -~~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 116 -PLDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred -CCCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 12234555555555 4456 5898874
No 308
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=51.87 E-value=1.3e+02 Score=29.76 Aligned_cols=129 Identities=11% Similarity=0.113 Sum_probs=71.2
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH-------HhchHHHHh----hcCeeEE
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG-------VVNFDDILR----ETDSFMV 262 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a-------v~nldeI~~----~~DgI~I 262 (510)
+.+++ +..++.|++-|++.-. ...+ ..+++.+...+.+ .++.-|....+ ..++.+.++ .++.+++
T Consensus 89 ~~edv-~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 164 (233)
T cd04723 89 SLENA-QEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIV 164 (233)
T ss_pred CHHHH-HHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEE
Confidence 35566 5567889998887643 2334 4555555544432 45666655443 122333333 3566776
Q ss_pred eCCcccCCCCc--hhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCC
Q 010449 263 ARGDLGMEIPV--EKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAY 340 (510)
Q Consensus 263 grgDLg~e~~~--~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~y 340 (510)
. |+..+-.. .++. .-+++ ++..+.|++++..+ =+ ..|+..+...|+|++++..=--.|++
T Consensus 165 ~--di~~~G~~~g~~~~-~~~~i---~~~~~ipvi~~GGi---------~s---~edi~~l~~~G~~~vivGsal~~g~~ 226 (233)
T cd04723 165 L--DIDRVGSGQGPDLE-LLERL---AARADIPVIAAGGV---------RS---VEDLELLKKLGASGALVASALHDGGL 226 (233)
T ss_pred E--EcCccccCCCcCHH-HHHHH---HHhcCCCEEEeCCC---------CC---HHHHHHHHHcCCCEEEEehHHHcCCC
Confidence 4 44332211 1221 12233 34568999987653 33 34555666679999999765556666
Q ss_pred HHHH
Q 010449 341 PEIA 344 (510)
Q Consensus 341 P~~~ 344 (510)
+.+.
T Consensus 227 ~~~~ 230 (233)
T cd04723 227 TLED 230 (233)
T ss_pred CHHH
Confidence 6553
No 309
>PRK15005 universal stress protein F; Provisional
Probab=51.62 E-value=35 Score=30.00 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 010449 382 LASSAVRTANKARAKLIVVLTRG--------GTTAKLVAKYRPAVPILSV 423 (510)
Q Consensus 382 ia~~av~~A~~~~a~aIvv~T~s--------G~tA~~iSr~RP~~PIiav 423 (510)
.+...++.|.+.+++.||+-|+. |+++..+.+. -+|||+.+
T Consensus 95 p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~-a~cpVlvV 143 (144)
T PRK15005 95 PKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRH-AECSVLVV 143 (144)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHh-CCCCEEEe
Confidence 34556677899999999998764 5567777666 44999987
No 310
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=51.49 E-value=91 Score=32.45 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=41.8
Q ss_pred CCeEEEEecCCCCCCH----HHHHHHHHhCCCeEEEeecCCC-----HHHHHHHHHHHHHHHHhcCCcEEEEecCC
Q 010449 20 PKTKIVCTLGPASRSV----PMLEKLLRAGMNVARFNFSHGT-----HEYQQETLNNLRAAMHNTQILCAVMLDTK 86 (510)
Q Consensus 20 ~~tkIi~TiGp~~~~~----~~l~~li~~G~~~~RiN~sh~~-----~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 86 (510)
.+...-+|+|..+.++ +..+++.++|.+.+.+...|+. .+.-.++++.+|++ .|.-+.+++|..
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDaN 197 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDAN 197 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEECC
Confidence 3455667776654233 4556678899999999999886 56656666666654 343345666653
No 311
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.45 E-value=2.1e+02 Score=30.39 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=71.9
Q ss_pred ccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh----hcCeeEEeCCcccC------C
Q 010449 201 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR----ETDSFMVARGDLGM------E 270 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~----~~DgI~IgrgDLg~------e 270 (510)
.|+..|+|+|-++.-. -.+..+|.+++ .+..|=+-.-| ++++.+ -+|.|.+|+---+. .
T Consensus 212 lAl~~~aDGVHLgq~d--l~~~~aR~llg---~~~iIG~S~Hs------~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~ 280 (347)
T PRK02615 212 IALAVDADGVHLGQED--LPLAVARQLLG---PEKIIGRSTTN------PEEMAKAIAEGADYIGVGPVFPTPTKPGKAP 280 (347)
T ss_pred HHHHcCCCEEEeChhh--cCHHHHHHhcC---CCCEEEEecCC------HHHHHHHHHcCCCEEEECCCcCCCCCCCCCC
Confidence 3567899999998532 12456666654 23333333334 444333 37999998643321 2
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHH
Q 010449 271 IPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRR 350 (510)
Q Consensus 271 ~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~ 350 (510)
.|++.+ -..+.....|++.-..+ +. .++......|+|+|.+.+.-.....|.++++.+.+
T Consensus 281 ~Gle~l-------~~~~~~~~iPv~AiGGI----------~~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~ 340 (347)
T PRK02615 281 AGLEYL-------KYAAKEAPIPWFAIGGI----------DK---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLK 340 (347)
T ss_pred CCHHHH-------HHHHHhCCCCEEEECCC----------CH---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHH
Confidence 232222 22234557887653221 12 23455666799999998877766789998888777
Q ss_pred HHH
Q 010449 351 ICI 353 (510)
Q Consensus 351 i~~ 353 (510)
...
T Consensus 341 ~l~ 343 (347)
T PRK02615 341 QLS 343 (347)
T ss_pred HHh
Confidence 554
No 312
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=51.43 E-value=81 Score=32.82 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCCEEEEcCC----------CCHHHHHHHHHH----hccCCCCceEEEEecCHHHHhchHHHHhh-----cCeeEEe-CC
Q 010449 206 NIDMIALSFV----------RKGSDLVNVRKV----LGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMVA-RG 265 (510)
Q Consensus 206 g~d~I~~sfV----------~sa~dv~~vr~~----l~~~~~~~~IiakIEt~~av~nldeI~~~-----~DgI~Ig-rg 265 (510)
.+|+|-+.+- +..+.+.++-+. ..+.+.++.+++|+---...+++.++++. +|+|.+- |-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4888877651 223444444333 32223468899999421122244444443 5888753 20
Q ss_pred ----c-----ccCC---C-CchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEE
Q 010449 266 ----D-----LGME---I-PVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 330 (510)
Q Consensus 266 ----D-----Lg~e---~-~~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~im 330 (510)
+ +... + |....+...+.+-...+.. ..|++.+.-+. ...|+..++..|||++|
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------------t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------------SGEDAYEKIRAGASLVQ 307 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHcCCCHHh
Confidence 0 1100 1 1123334445554444555 57888655433 24567788889999999
Q ss_pred ecc
Q 010449 331 LSG 333 (510)
Q Consensus 331 Ls~ 333 (510)
+..
T Consensus 308 vg~ 310 (327)
T cd04738 308 LYT 310 (327)
T ss_pred ccH
Confidence 973
No 313
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=51.42 E-value=25 Score=37.85 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=41.7
Q ss_pred EecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 26 CTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 26 ~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
+.||-..++.+-++-|.++|+|+.=|+-|.|+-.++.++|..+|+
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~ 288 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKE 288 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHh
Confidence 567888888999999999999999999999999999999999997
No 314
>PLN02550 threonine dehydratase
Probab=51.35 E-value=2.4e+02 Score=32.08 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.++.+. .|..+-...+...-..|++.++.. ...-++.+...+++++ +... |
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~g------~~~dea~~~A~~la~e-~g~~-f 231 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLVG------DSYDEAQAYAKQRALE-EGRT-F 231 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHHh-cCCE-E
Confidence 4556799999998764 244443444555667899777652 3355677777776654 2221 1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
-..|. .| .....-..-+.++.++++ .++||+..-+|.++.-++. ++|...|+++
T Consensus 232 i~pfd-------dp-~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGV 291 (591)
T PLN02550 232 IPPFD-------HP-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGV 291 (591)
T ss_pred ECCCC-------Ch-HHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 122333445778888875 6999999999998655544 6799999999
No 315
>PRK05638 threonine synthase; Validated
Probab=51.29 E-value=1e+02 Score=33.41 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+...|+++|.|+.+. .|..+....+...-..|++.+... |. ..++++...+++++ ...++
T Consensus 126 alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~--~~~~~ 186 (442)
T PRK05638 126 SVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL--NGLYN 186 (442)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh--CCeEe
Confidence 4456789999999774 455555666777778899988874 23 45777776666432 21111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHh
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAK 413 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~tA~~iSr 413 (510)
...+ ..|. ..+.....+.+++++++.+.||+.+-+|.+..-+++
T Consensus 187 ~~~~-------~np~-~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~ 230 (442)
T PRK05638 187 VTPE-------YNII-GLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYK 230 (442)
T ss_pred cCCC-------CChh-HhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHH
Confidence 1100 0111 123334556677888889999999999999766655
No 316
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.78 E-value=47 Score=34.03 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=45.4
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEE--ecCHHHHhchHHHHhh-cCeeEEeC
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-~DgI~Igr 264 (510)
.+.+.+ ..+++.|+|+|.+... +.++++++.+.+. .++++.|- | -.+|+.++++. +|+|-+|.
T Consensus 197 ~tleea-~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 197 ESLDEL-RQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred CCHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 345566 5678999999999764 8889998887763 24444432 3 24688888887 79999983
No 317
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=50.48 E-value=93 Score=30.69 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc
Q 010449 245 EGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 324 (510)
Q Consensus 245 ~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~ 324 (510)
++++|+.+|-+..|.=+|| |-+-.--+-||.+ .||..||.+++++
T Consensus 53 ~gv~dIkai~~~v~vPIIG--------------------IiKrd~~~s~v~I------------TptlkeVd~L~~~--- 97 (229)
T COG3010 53 EGVEDIKAIRAVVDVPIIG--------------------IIKRDYPDSPVRI------------TPTLKEVDALAEA--- 97 (229)
T ss_pred cchhhHHHHHhhCCCCeEE--------------------EEecCCCCCCcee------------cccHHHHHHHHHC---
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRG 404 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~s 404 (510)
|+|-|-+ +-..=.-|.. .+.+++.+ +++ +...-..|.=...=...|.+++++ ||--|.|
T Consensus 98 Ga~IIA~--DaT~R~RP~~---~~~~~i~~-~k~--------------~~~l~MAD~St~ee~l~a~~~G~D-~IGTTLs 156 (229)
T COG3010 98 GADIIAF--DATDRPRPDG---DLEELIAR-IKY--------------PGQLAMADCSTFEEGLNAHKLGFD-IIGTTLS 156 (229)
T ss_pred CCcEEEe--ecccCCCCcc---hHHHHHHH-hhc--------------CCcEEEeccCCHHHHHHHHHcCCc-EEecccc
Q ss_pred chHH-------------HHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCC
Q 010449 405 GTTA-------------KLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEG 459 (510)
Q Consensus 405 G~tA-------------~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~ 459 (510)
|+|- +.+++ +.|+++|= . +.+++..|++.. ..|++.+.+..
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~--~~~~vIAE-------G----r~~tP~~Ak~a~-~~Ga~aVvVGs 210 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSD--AGCRVIAE-------G----RYNTPEQAKKAI-EIGADAVVVGS 210 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHh--CCCeEEee-------C----CCCCHHHHHHHH-HhCCeEEEECc
No 318
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=50.31 E-value=39 Score=32.81 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=67.6
Q ss_pred ccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCc------h
Q 010449 201 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPV------E 274 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~------~ 274 (510)
...+.|+|+|.+. +++.+++.++-+++++.|...-|.-.-+| .++.++.++...|.|++= +++-|. +
T Consensus 75 ~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~VlvM----sV~PG~~Gq~f~~ 147 (201)
T PF00834_consen 75 EFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLVM----SVEPGFGGQKFIP 147 (201)
T ss_dssp HHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEEE----SS-TTTSSB--HG
T ss_pred HHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEEE----EecCCCCcccccH
Confidence 3467899988765 56778888888999988877777777787 678899999999998873 333333 2
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcC-CCCChHhHHHHHHHHHcCCceEEec
Q 010449 275 KIFLAQKMMIYKCNLVGKPVVTATQMLESMIKS-PRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 275 ~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~-~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.+..--+++-+...++|..+.+. +.. -.+.. +......|+|.+++.
T Consensus 148 ~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~~-----~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 148 EVLEKIRELRKLIPENGLDFEIE-------VDGGINEEN-----IKQLVEAGADIFVAG 194 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCGSEEE-------EESSESTTT-----HHHHHHHT--EEEES
T ss_pred HHHHHHHHHHHHHHhcCCceEEE-------EECCCCHHH-----HHHHHHcCCCEEEEC
Confidence 33333334444445555444331 111 11222 245566799988875
No 319
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=50.27 E-value=1.9e+02 Score=31.03 Aligned_cols=118 Identities=15% Similarity=0.267 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+-...+.+.-..|++.+... ....++.+.+.++.++ +.++..
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~------~~~~~a~~~a~~~a~~-~g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD------LNYDDAVRLAWKMAQE-NGWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC------CCHHHHHHHHHHHHHh-cCcEee
Confidence 4566899999999774 244443456677788999977664 2355777777777654 222111
Q ss_pred HH----HHHHHHhcCCCCCCchHHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHHh-----hCCCCc-EEEE
Q 010449 362 RA----VFKEMIRSTPLPMSPLESLASSAVRTANKAR------AKLIVVLTRGGTTAKLVAK-----YRPAVP-ILSV 423 (510)
Q Consensus 362 ~~----~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~------a~aIvv~T~sG~tA~~iSr-----~RP~~P-Iiav 423 (510)
.. .|.. .+....+--...+.++.++++ .+.||+.+-+|.++-.++. ++|..| |+++
T Consensus 189 ~~~~~~~~~~------~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 189 QDTAWEGYEK------IPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred cccccccccc------CchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 10 0110 011111223344556666654 5889998888876554443 367765 7777
No 320
>PRK08417 dihydroorotase; Provisional
Probab=50.23 E-value=3.4e+02 Score=28.77 Aligned_cols=188 Identities=12% Similarity=0.171 Sum_probs=99.7
Q ss_pred cccCCc-----cccCCCCChhcHHHHHhccCcCCCCEEEE-----cCCCCHHHHHHHHHHhccC-CCCceEEEEecCHHH
Q 010449 178 VNLPGV-----VVDLPTLTEKDKEDILRWGVPNNIDMIAL-----SFVRKGSDLVNVRKVLGPH-AKNIQLMSKVENQEG 246 (510)
Q Consensus 178 vnlp~~-----~~~lp~lt~~D~~di~~~a~~~g~d~I~~-----sfV~sa~dv~~vr~~l~~~-~~~~~IiakIEt~~a 246 (510)
+-+||. ++.-|.++..|.+...+.|+..|+..|+. |.+.+++.++...+..++. +.-.....-....+.
T Consensus 27 ~vlPG~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (386)
T PRK08417 27 TLLPALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGK 106 (386)
T ss_pred EEccCeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCcc
Confidence 445663 23335555566656557788889998775 3455666776666655432 111112222233344
Q ss_pred HhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcC
Q 010449 247 VVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDG 325 (510)
Q Consensus 247 v~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G 325 (510)
+..+++..+. ++++.+. + .+. .....++++.+++.|+|+.+- |.-.++.+- .....|
T Consensus 107 ~~~i~~l~~~Gv~~~k~~-~----~~~----~~~l~~~~~~a~~~g~~V~~H------------aEd~~~~~~-~~~~~g 164 (386)
T PRK08417 107 LSNIATLLKKGAKALELS-S----DLD----ANLLKVIAQYAKMLDVPIFCR------------CEDSSFDDS-GVMNDG 164 (386)
T ss_pred HHHHHHHHHCCCEEEECC-C----CCC----HHHHHHHHHHHHHcCCEEEEe------------CCCHHHhhH-HHHhcC
Confidence 5555555432 3454431 1 111 234566777888999998873 223333220 011111
Q ss_pred CceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHH-HHHHHHHHHHhcCCcEEEEEcCC
Q 010449 326 TDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLES-LASSAVRTANKARAKLIVVLTRG 404 (510)
Q Consensus 326 ~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~-ia~~av~~A~~~~a~aIvv~T~s 404 (510)
...++.. ....|. ..|. ....++++|+..+++.-|+...|
T Consensus 165 --------------------------------~~~~~~~------~~~rp~-~aE~~~v~~~~~la~~~~~~lhi~hvS~ 205 (386)
T PRK08417 165 --------------------------------ELSFELG------LPGIPS-IAETKEVAKMKELAKFYKNKVLFDTLAL 205 (386)
T ss_pred --------------------------------hhhHHhC------CCCCCH-HHHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 0001000 000111 1222 23456788999999999999999
Q ss_pred chHHHHHHhhCC-CCcEEEEEec
Q 010449 405 GTTAKLVAKYRP-AVPILSVVVP 426 (510)
Q Consensus 405 G~tA~~iSr~RP-~~PIiav~~~ 426 (510)
+.+...+.+.|. ..+|-+=|+|
T Consensus 206 ~~~~~~i~~ak~~g~~vt~ev~p 228 (386)
T PRK08417 206 PRSLELLDKFKSEGEKLLKEVSI 228 (386)
T ss_pred HHHHHHHHHHHHCCCCEEEEech
Confidence 999988876654 4688777666
No 321
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=50.11 E-value=47 Score=33.84 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 196 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
+.+ ..+.+.|+|+|.+..+ ++++++++.+.++....+++++|- -|+ +|+.++++. +|+|.++
T Consensus 194 eea-~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----GGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 194 EEA-LAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----GGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----CCCCHHHHHHHHHcCCcEEEEC
Confidence 455 4467899999999766 456777777766543334444432 334 788888887 7999776
No 322
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.74 E-value=1.2e+02 Score=32.17 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=87.1
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecC--HHHHhchHHHHhhcCeeEEeCCcccCCC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN--QEGVVNFDDILRETDSFMVARGDLGMEI 271 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt--~~av~nldeI~~~~DgI~IgrgDLg~e~ 271 (510)
..+.| ....+.|+|.|-+. |.+.++++.++.+-+.. +++++|-|-- ..| +.++-.-+|++=|.||.+|
T Consensus 44 tv~Qi-~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lA---l~a~~~G~~~iRINPGNig--- 113 (360)
T PRK00366 44 TVAQI-KRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLA---LAAAEAGADALRINPGNIG--- 113 (360)
T ss_pred HHHHH-HHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHH---HHHHHhCCCEEEECCCCCC---
Confidence 33445 44567899988776 56777777776665443 6899998833 333 3344445899999999984
Q ss_pred CchhHHHHHHHHHHHHHHcCCCe--EEehhhhHhhhcC--CCCChHhH-----HHHHHHHHcCCceEEeccCCCCCCCHH
Q 010449 272 PVEKIFLAQKMMIYKCNLVGKPV--VTATQMLESMIKS--PRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPE 342 (510)
Q Consensus 272 ~~~~v~~~qk~ii~~~~~~gkpv--ivaTqmLeSM~~~--~~PtraEv-----~Dv~~av~~G~D~imLs~Eta~G~yP~ 342 (510)
...+--+.++++|+++|+|+ ++=.-=|+.-... ..||..-+ ..+.-+-..|++=+.+|--++ .|.
T Consensus 114 ---~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS---~v~ 187 (360)
T PRK00366 114 ---KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKAS---DVQ 187 (360)
T ss_pred ---chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHH
Confidence 34566789999999999997 3322223222221 12443211 223335567888888886554 355
Q ss_pred HHHHHHHHH
Q 010449 343 IAVKIMRRI 351 (510)
Q Consensus 343 ~~V~~m~~i 351 (510)
.+++.-+.+
T Consensus 188 ~~i~ayrll 196 (360)
T PRK00366 188 DLIAAYRLL 196 (360)
T ss_pred HHHHHHHHH
Confidence 555544443
No 323
>PRK08526 threonine dehydratase; Provisional
Probab=49.57 E-value=2.5e+02 Score=30.22 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+..+|+..|.|+.+- .|..+....+...-..|++.++. |...-++++...+++++- . ..|
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~-g-~~~ 142 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKEN-N-LTF 142 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhc-C-CEe
Confidence 4566899999998763 35555555566677789988764 234567777666654432 2 112
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
-..|. .+ .....-..-+.++.+++ +.++||+..-+|.++.-++ ..+|.+.|+++
T Consensus 143 v~p~~-------~~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigV 201 (403)
T PRK08526 143 IHPFE-------DE-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201 (403)
T ss_pred eCCCC-------CH-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 01 11122233466666666 5799999999998755544 46799999999
No 324
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.56 E-value=34 Score=34.13 Aligned_cols=172 Identities=15% Similarity=0.232 Sum_probs=93.9
Q ss_pred EEEecCHHHHhchHHHHhh-----cCeeEEeCCcccCCCCchhHHHHHHHHHHHHH-HcCCCeEEehhhhHhhhcCCCCC
Q 010449 238 MSKVENQEGVVNFDDILRE-----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCN-LVGKPVVTATQMLESMIKSPRPT 311 (510)
Q Consensus 238 iakIEt~~av~nldeI~~~-----~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~-~~gkpvivaTqmLeSM~~~~~Pt 311 (510)
+-||.=..- ++.++|++. .|+|||| |-+|++. ....+.+++++ ..+.|++. .|.
T Consensus 19 ~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------------fP~ 78 (240)
T COG1646 19 LTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------------FPG 78 (240)
T ss_pred EEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------------ecC
Confidence 445543332 566666664 5999999 5444432 23445667777 89999997 344
Q ss_pred hHhHHHHHHHHHcCCceEEe-----ccCCC--CCCCHHHHHHHHHHHHHHH--hcccc--hHHHHHHHHhcCCCCCCchH
Q 010449 312 RAEATDVANAVLDGTDCVML-----SGESA--AGAYPEIAVKIMRRICIEA--ESSLD--YRAVFKEMIRSTPLPMSPLE 380 (510)
Q Consensus 312 raEv~Dv~~av~~G~D~imL-----s~Eta--~G~yP~~~V~~m~~i~~~a--E~~~~--~~~~~~~~~~~~~~~~~~~~ 380 (510)
-- +.+..++|+++. |.++. +| -..+......++..+. |.++- .-.---+...-.+.|.+. +
T Consensus 79 ~~------~~is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~-~ 150 (240)
T COG1646 79 SP------SGISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDK-E 150 (240)
T ss_pred Ch------hccCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCc-H
Confidence 32 334558998875 22221 22 2445555555544221 11110 000000000111123333 3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCchH----HHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhcc
Q 010449 381 SLASSAVRTANKARAKLIVVLTRGGTT----AKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLI 448 (510)
Q Consensus 381 ~ia~~av~~A~~~~a~aIvv~T~sG~t----A~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L 448 (510)
-++..+.-+++-++=..+-+--.||.- ...+|+.....|++.- . +.++..+||++..
T Consensus 151 ~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivG-------G----GIrs~E~A~~~a~ 211 (240)
T COG1646 151 DIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVG-------G----GIRSPEQAREMAE 211 (240)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEc-------C----CcCCHHHHHHHHH
Confidence 455566666777888866665555542 5678888888777776 2 2468888888875
No 325
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=49.31 E-value=36 Score=33.95 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCH---HHHHHHHHHhccCCCCceEEEE--ecCHHHHhchHHHHhh-cCeeEEeCCcc
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKG---SDLVNVRKVLGPHAKNIQLMSK--VENQEGVVNFDDILRE-TDSFMVARGDL 267 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa---~dv~~vr~~l~~~~~~~~Iiak--IEt~~av~nldeI~~~-~DgI~IgrgDL 267 (510)
|..++.+.+.+.|+|+|.+.--.+. .+.+.++++-... ..+.||+- |.|. +...+.++. +|++|+|||=|
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhc
Confidence 3334436677899999988533322 2455555543321 13667763 3333 233333444 89999999877
Q ss_pred cCCCC
Q 010449 268 GMEIP 272 (510)
Q Consensus 268 g~e~~ 272 (510)
.-.+.
T Consensus 225 ~~~~~ 229 (231)
T TIGR00736 225 KGNVE 229 (231)
T ss_pred cCCcC
Confidence 65443
No 326
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=49.28 E-value=1.6e+02 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEecc
Q 010449 277 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 333 (510)
Q Consensus 277 ~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~ 333 (510)
+..-.+++++.++. ++|+.+= -+|.-.++.+++. +...|+|++.++.
T Consensus 153 ~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 153 PELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 44556677777654 7899873 2455556667776 5677999999874
No 327
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.07 E-value=31 Score=35.56 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=46.5
Q ss_pred HHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 197 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
+. .-+++.|+|.|.+=... +++++++.+.++..+.++ +||---|+ +|+.++++. .|.|.+|
T Consensus 211 ea-~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 211 QL-DEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred HH-HHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 44 45688999999999885 889988888776555453 46655555 688888887 7999987
No 328
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=48.94 E-value=3.7e+02 Score=28.90 Aligned_cols=149 Identities=12% Similarity=0.199 Sum_probs=86.0
Q ss_pred CChhcHHHHHhccCcCCCCEEEEcCC---------------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHH
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALSFV---------------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDIL 254 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~sfV---------------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~ 254 (510)
.++.|..++.+...+.|+|+|-+.+- ++++-+.++-+.+++. .++.+++||= + -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHH
Confidence 36677777756667788999887652 4556666665555433 3588999995 2 233466666
Q ss_pred hh-----cCeeEEe---CCcccC--C-------------CC-c---hhHHHHHHHHHHHHHHc------CCCeEEehhhh
Q 010449 255 RE-----TDSFMVA---RGDLGM--E-------------IP-V---EKIFLAQKMMIYKCNLV------GKPVVTATQML 301 (510)
Q Consensus 255 ~~-----~DgI~Ig---rgDLg~--e-------------~~-~---~~v~~~qk~ii~~~~~~------gkpvivaTqmL 301 (510)
++ +|||.+- ..=+++ + .| + .--|.+...+-+.+++. +.|++-.+-+.
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~ 280 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE 280 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC
Confidence 53 5877653 110111 1 10 1 12233333333333332 47777655543
Q ss_pred HhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCC-HHHHHHHHHHHHHHHhccc
Q 010449 302 ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAY-PEIAVKIMRRICIEAESSL 359 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~y-P~~~V~~m~~i~~~aE~~~ 359 (510)
-..|++.+++.|||++.+. |+.-.+ | ..+.+|+++.++++
T Consensus 281 ------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~m 321 (385)
T PLN02495 281 ------------TGGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDFM 321 (385)
T ss_pred ------------CHHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHHH
Confidence 3578999999999999997 344344 4 34555666666543
No 329
>PRK07591 threonine synthase; Validated
Probab=48.88 E-value=2.5e+02 Score=30.30 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+...|+++|.|+.+. .|..+.-..+...-..|++.+... |.| .++++.+.+++++-+.++ +
T Consensus 151 alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~-~ 212 (421)
T PRK07591 151 SVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWG-F 212 (421)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEE-E
Confidence 4556789999999774 354455556677788999988765 344 467777777665432221 1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHh----h-------CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR---AKLIVVLTRGGTTAKLVAK----Y-------RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~---a~aIvv~T~sG~tA~~iSr----~-------RP~~PIiav 423 (510)
... ...|. ..+.-..-+.++.++++ .+.||+.+-+|.+..-+++ + +|...|+++
T Consensus 213 ~n~-------~~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 213 VNI-------NLRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred ecC-------CCCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 000 00111 01222334667778875 5899999999998766655 3 688889998
No 330
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=48.85 E-value=1.3e+02 Score=30.19 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHhh-cCeeEEeCCccc--CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHH-HHHHHHcCC
Q 010449 251 DDILRE-TDSFMVARGDLG--MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATD-VANAVLDGT 326 (510)
Q Consensus 251 deI~~~-~DgI~IgrgDLg--~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~D-v~~av~~G~ 326 (510)
+-+++. .||+++. |--| ..+..++-..+.+.+.+.++ -..|+++.+. .++-.|..+ ...|...|+
T Consensus 28 ~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 28 EFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG---------SNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC---------CccHHHHHHHHHHHHHcCC
Confidence 333433 6999987 3322 33444554455555554442 2457664321 223334444 344788899
Q ss_pred ceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 327 DCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 327 D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
|++|+..-.....-+-+.+++.+.|+..+.-
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 9999997766555678899999999987654
No 331
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=48.59 E-value=1.5e+02 Score=31.33 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----cCeeEEeCCcccCCCCc-hhHHHHHHHHHHHHHHc
Q 010449 216 RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIPV-EKIFLAQKMMIYKCNLV 290 (510)
Q Consensus 216 ~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~DgI~IgrgDLg~e~~~-~~v~~~qk~ii~~~~~~ 290 (510)
-+.++++.+++.. +..++.| ++.+.++...+ +|+|.+. +--|..+.. ..-..+...+....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 5677788877655 3577777 33344444433 5888887 222444321 11122333444433333
Q ss_pred --CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 291 --GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 291 --gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..|+|.+.-+- --.|+..++..|||++.+.
T Consensus 269 ~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 37888765543 3579999999999999985
No 332
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.56 E-value=1.9e+02 Score=29.88 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=57.1
Q ss_pred HHHHhh-cCeeEEe--CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCC
Q 010449 251 DDILRE-TDSFMVA--RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGT 326 (510)
Q Consensus 251 deI~~~-~DgI~Ig--rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~ 326 (510)
+..++. +|||++. -|+. ..+..++-..+.+..++.+ .-..|+++-+ ...+-.|..+.+. |-..|+
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~-~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGEC-ATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHcCCCEEEECcccccc-hhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHHHHHhCC
Confidence 333443 7999985 2322 3344555555555555554 3347776532 1233345555544 667799
Q ss_pred ceEEeccCCCCCCCHHHHHHHHHHHHHHHh
Q 010449 327 DCVMLSGESAAGAYPEIAVKIMRRICIEAE 356 (510)
Q Consensus 327 D~imLs~Eta~G~yP~~~V~~m~~i~~~aE 356 (510)
|++|+..=--...-+.+.++.-+.||..++
T Consensus 105 d~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 105 DGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 999998654333335788888999998874
No 333
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.33 E-value=1e+02 Score=31.04 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred HHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010449 224 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 301 (510)
Q Consensus 224 vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL 301 (510)
+++.+.....-.-.+..+-++... ||+.. .|.++|. .|=+.-.+..+ ..++.+|+.+|.++++
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV----- 74 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITT----EVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV----- 74 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHH----HHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 555565432233355555555443 55554 4999995 23333344444 4688899999999987
Q ss_pred HhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 302 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-|.+ +-..+..++..|+++||+.
T Consensus 75 ----Rvp~~---~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----RVPTN---EPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----ECCCC---CHHHHHHHhCCCCCeeeec
Confidence 33344 4456777888899999996
No 334
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.24 E-value=1e+02 Score=30.35 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 277 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 277 ~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
..+..+.++.++++|+++++-|- + + ..++..++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv------n----~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV------N----D---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC------C----C---HHHHHHHHHcCCCEEEc
Confidence 34567899999999999998772 1 1 24556788899999874
No 335
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=48.07 E-value=1.2e+02 Score=27.79 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=53.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhHHHHHHHHH
Q 010449 207 IDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMI 284 (510)
Q Consensus 207 ~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v~~~qk~ii 284 (510)
-..++.|| +.+.+..+++... +..+..-+++.........+... .|++.+. ...+..+++
T Consensus 92 ~~v~i~s~--~~~~l~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~~~~~i 153 (189)
T cd08556 92 ERVVVSSF--DHEALRALKELDP----EVPTGLLVDKPPLDPLLAELARALGADAVNPH------------YKLLTPELV 153 (189)
T ss_pred CCEEEEeC--CHHHHHHHHHhCC----CCcEEEEeecCcccchhhhHHHhcCCeEEccC------------hhhCCHHHH
Confidence 44566665 5677777766542 33444344433222211112222 2333221 122568999
Q ss_pred HHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 285 YKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 285 ~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
+.|+++|+++++-|- . +..+...++..|+|+|+-
T Consensus 154 ~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 154 RAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 999999999998762 1 244567778899999874
No 336
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=47.71 E-value=2.1e+02 Score=29.60 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ . ..++.+...+++++ +.++ |
T Consensus 81 alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~-~g~~-~ 141 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----S-QDDAQEEVERLVAD-RGLT-M 141 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCCE-e
Confidence 4556899999999773 2333333445555668999877653 2 24556666665543 2221 1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
...| ..| ...+.-...+.++.+++ +.+.||+..-+|.+..-+++ ++|...|+++
T Consensus 142 ~~~~-------~n~-~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigv 200 (317)
T TIGR02991 142 LPPF-------DHP-DIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGV 200 (317)
T ss_pred eCCC-------CCh-HHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1001 011 12233344666777776 45789999999998766666 5698889999
No 337
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=47.53 E-value=1.6e+02 Score=28.97 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=75.3
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHH---------
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQ--------- 280 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~q--------- 280 (510)
|.+=-..+.|+...+.+.|-+.|-. .|=.-.-|+.+.+-+.++.+....++||-|-. +..+.+..+.
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEEC
Confidence 5555668888888887777665532 34456789999999999999888888887643 4445555444
Q ss_pred ----HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 281 ----KMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 281 ----k~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
.++++.|+.+|.|.+ |--+-.+++..|.+.|++++=+
T Consensus 92 P~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 92 PGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 589999999999975 3333345567899999988654
No 338
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=47.51 E-value=95 Score=33.35 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHhccCCCCceEEEE-ecCHHHHhchHHHHhh-cCeeEEeCCcccCCC--C---chhHHHHHHHHHHHHHH
Q 010449 217 KGSDLVNVRKVLGPHAKNIQLMSK-VENQEGVVNFDDILRE-TDSFMVARGDLGMEI--P---VEKIFLAQKMMIYKCNL 289 (510)
Q Consensus 217 sa~dv~~vr~~l~~~~~~~~Iiak-IEt~~av~nldeI~~~-~DgI~IgrgDLg~e~--~---~~~v~~~qk~ii~~~~~ 289 (510)
+-+++..+++.. +.+++.| |-+.+. ....++. +|+|+|+-. =|-.+ + +.-++++++. +.
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV~~~~d---A~~a~~~G~d~I~vsnh-GGr~~d~~~~t~~~L~ei~~~----~~- 306 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGILHPDD---ARRAVEAGVDGVVVSNH-GGRQVDGSIAALDALPEIVEA----VG- 306 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecCCCHHH---HHHHHHCCCCEEEEcCC-CCcCCCCCcCHHHHHHHHHHH----hc-
Confidence 557888887754 3577877 433322 2222222 699998711 01111 1 2233433332 21
Q ss_pred cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 290 VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 290 ~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
-..|++.+.-+- .-.||+.|+..|||++++.
T Consensus 307 ~~~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 307 DRLTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred CCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 248988876644 3579999999999999985
No 339
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=47.07 E-value=2.7e+02 Score=28.30 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=58.7
Q ss_pred hHHHHh--hcCeeEEeC--CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHH-HHHHc
Q 010449 250 FDDILR--ETDSFMVAR--GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVA-NAVLD 324 (510)
Q Consensus 250 ldeI~~--~~DgI~Igr--gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~-~av~~ 324 (510)
++..++ -.|||+++- |+ +..|..++-..+.+.+++.++ -.+|++.-+ ..++-.|..+.+ .|...
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE-~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGE-AFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEECCCccc-cccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHHHHHHHc
Confidence 344444 379998862 22 133455555555555555553 235776532 234555665554 47789
Q ss_pred CCceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 325 GTDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 325 G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
|+|++|+..---...-+.+.++....++..+.-
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999986443333356778888888887653
No 340
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=47.01 E-value=2.1e+02 Score=29.16 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcc---
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESS--- 358 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~--- 358 (510)
-+..+|+..|.++.+... ..+.+. .-. .-.-..|++.++...+. | .++.+...+++.+.++.
T Consensus 72 alA~~a~~~G~~~~ivvp------~~~~~~--~~~--~~~~~~Ga~v~~v~~~~----~-~~~~~~~~~~~~~~~~~~~~ 136 (311)
T TIGR01275 72 ATALAAKKLGLDAVLVLR------EKEELN--GNL--LLDKLMGAETRVYSAEE----Y-FEIMKYAEELAEELEKEGRK 136 (311)
T ss_pred HHHHHHHHhCCceEEEec------CCccCC--CCH--HHHHHcCCEEEEECchh----h-hhhHHHHHHHHHHHHhcCCC
Confidence 455689999999876421 111111 111 11246899988776422 1 11223444444443321
Q ss_pred -cchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc----CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 359 -LDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKA----RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 359 -~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~----~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
+.+.. ....+ .-.+.....+.++.+++ ..++||+..-+|.|+--+++ ++|.++|+++
T Consensus 137 ~~~~p~-------~~~~~-~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV 202 (311)
T TIGR01275 137 PYVIPV-------GGSNS-LGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGV 202 (311)
T ss_pred eEEECC-------CCCcH-HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEE
Confidence 11100 00011 11122223456677766 47899999999999766655 4899999988
No 341
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=46.97 E-value=2.1e+02 Score=29.52 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
...++.+.......+++...+..-..++.+..-++. .+-+|+. |-.+|+++=...-+++++.|++.|.+| +-
T Consensus 64 ~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 139 (286)
T PRK08610 64 VKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHSPFEENVATTKKVVEYAHEKGVSVEAELG 139 (286)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred ehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEeccCCCCCCC---HHHHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGESAAGAY---PEIAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imLs~Eta~G~y---P~~~V~~m~~i~~~a 355 (510)
...=-|--.....-......+...++.. |+|++-.|-=|+.|.| |---.+.+.+|....
T Consensus 140 ~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 140 TVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred ccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
No 342
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=46.81 E-value=1.1e+02 Score=32.38 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=84.1
Q ss_pred ccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHH
Q 010449 201 WGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQ 280 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~q 280 (510)
..-+.|+|.|-++ |.+.++...++++-+.. +++++|-|-----+ .++.+-...|.+=|.||..|-.- --
T Consensus 44 ~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rl-a~~~~~~g~~k~RINPGNig~~~-------~v 112 (361)
T COG0821 44 ALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYRL-ALEAAECGVDKVRINPGNIGFKD-------RV 112 (361)
T ss_pred HHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHHH-HHHhhhcCcceEEECCcccCcHH-------HH
Confidence 3356789986655 45555555555443332 78899988543111 12222223799999999887643 45
Q ss_pred HHHHHHHHHcCCCe--EEehhhhHhhhc--CCCCChHhH-----HHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHH
Q 010449 281 KMMIYKCNLVGKPV--VTATQMLESMIK--SPRPTRAEA-----TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRI 351 (510)
Q Consensus 281 k~ii~~~~~~gkpv--ivaTqmLeSM~~--~~~PtraEv-----~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i 351 (510)
+.++++|+++|||+ ++=.-=||-... --.||+.-+ ..+.-+-..|++=+.+|--.+ -|.++|+.-+.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~S---dv~~~v~aYr~l 189 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKAS---DVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHHHHHHHHHH
Confidence 78999999999997 443333333222 115676544 222336678999999986544 466666555544
Q ss_pred HHH
Q 010449 352 CIE 354 (510)
Q Consensus 352 ~~~ 354 (510)
..+
T Consensus 190 A~~ 192 (361)
T COG0821 190 AKR 192 (361)
T ss_pred HHh
Confidence 443
No 343
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=46.56 E-value=2e+02 Score=28.25 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEe-------CCccc
Q 010449 197 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVA-------RGDLG 268 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~Ig-------rgDLg 268 (510)
++ +.|++.++|+|.++ ++-..+..+++.+ ....+.=.-+. .++.+.+..+. +|.|.+| .-|.
T Consensus 73 ~~-dlA~~~~AdGVHlG--q~D~~~~~ar~~~-----~~~~iIG~S~h-~~eea~~A~~~g~DYv~~GpifpT~tK~~~- 142 (211)
T COG0352 73 RV-DLALAVGADGVHLG--QDDMPLAEARELL-----GPGLIIGLSTH-DLEEALEAEELGADYVGLGPIFPTSTKPDA- 142 (211)
T ss_pred cH-HHHHhCCCCEEEcC--CcccchHHHHHhc-----CCCCEEEeecC-CHHHHHHHHhcCCCEEEECCcCCCCCCCCC-
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 269 MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
--.|++.+.++.+..- +|++.-.-|= ...+......|+|+|-+........-|..+++-+
T Consensus 143 ~~~G~~~l~~~~~~~~-------iP~vAIGGi~-------------~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~ 202 (211)
T COG0352 143 PPLGLEGLREIRELVN-------IPVVAIGGIN-------------LENVPEVLEAGADGVAVVSAITSAADPAAAAKAL 202 (211)
T ss_pred CccCHHHHHHHHHhCC-------CCEEEEcCCC-------------HHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHH
Q ss_pred HHHHHH
Q 010449 349 RRICIE 354 (510)
Q Consensus 349 ~~i~~~ 354 (510)
.+...+
T Consensus 203 ~~~~~~ 208 (211)
T COG0352 203 RNALED 208 (211)
T ss_pred HHHHHh
No 344
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=46.45 E-value=1.5e+02 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEec
Q 010449 287 CNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLS 332 (510)
Q Consensus 287 ~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs 332 (510)
++..+.|++.+..+ -+.. |+.. .-..|+|+++++
T Consensus 193 ~~~~~ipvia~GGi---------~s~~---di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 193 SDAVSIPVIALGGA---------GSLD---DLVEVALEAGASAVAAA 227 (232)
T ss_pred HhhCCCCEEEECCC---------CCHH---HHHHHHHHcCCCEEEEe
Confidence 44568999987653 2344 4444 344699999986
No 345
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.34 E-value=4.9e+02 Score=29.57 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=108.8
Q ss_pred CCChhcHHHHHhccCcCCCCEEEE----------cCCCCHHHHHHHHHHhccCCCCceEEEEe--cCHHHHhc-------
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIAL----------SFVRKGSDLVNVRKVLGPHAKNIQLMSKV--ENQEGVVN------- 249 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~----------sfV~sa~dv~~vr~~l~~~~~~~~IiakI--Et~~av~n------- 249 (510)
.++..|+..|.....+.|++.|=+ +|+. .+.-+.++.+- +...++.+.+.. -+.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~-~~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELK-KALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHH-HhCCCCEEEEEEccccccccccCchhhHH
Confidence 567777777756666678887744 6664 33455555443 222455555543 33333322
Q ss_pred --hHHHHhh-cCeeEE--eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHH
Q 010449 250 --FDDILRE-TDSFMV--ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVL 323 (510)
Q Consensus 250 --ldeI~~~-~DgI~I--grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~ 323 (510)
++.-++. .|.+-+ +-.| + .-.+..++.++++|+-+-.+ + ++..+|.=|.....+++. +..
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd---------~-~n~~~~i~~ak~~G~~v~~~---i-~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALND---------P-RNLQAAIQAAKKHGAHAQGT---I-SYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCc---------H-HHHHHHHHHHHHcCCEEEEE---E-EeccCCCCCHHHHHHHHHHHHH
Confidence 1111111 354333 3333 2 24566778999999977654 1 444466557777778776 566
Q ss_pred cCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcC
Q 010449 324 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTR 403 (510)
Q Consensus 324 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~ 403 (510)
.|+|.|.|. +|+=...|.++-+.++.+..+..--+. -|++ ...-+|.+...+|-+.||+ +|=-|-
T Consensus 161 ~Gad~I~i~-Dt~G~~~P~~v~~lv~~lk~~~~~pi~--~H~H-----------nt~Gla~An~laAveaGa~-~vd~ai 225 (582)
T TIGR01108 161 MGVDSICIK-DMAGILTPKAAYELVSALKKRFGLPVH--LHSH-----------ATTGMAEMALLKAIEAGAD-GIDTAI 225 (582)
T ss_pred cCCCEEEEC-CCCCCcCHHHHHHHHHHHHHhCCCceE--EEec-----------CCCCcHHHHHHHHHHhCCC-EEEecc
Confidence 799999997 899999999998888887644321110 0111 0123556666677788888 454454
Q ss_pred Cc
Q 010449 404 GG 405 (510)
Q Consensus 404 sG 405 (510)
+|
T Consensus 226 ~G 227 (582)
T TIGR01108 226 SS 227 (582)
T ss_pred cc
Confidence 44
No 346
>PRK07695 transcriptional regulator TenI; Provisional
Probab=46.17 E-value=46 Score=31.84 Aligned_cols=36 Identities=6% Similarity=0.041 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
...+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 17 ~~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 17 LVAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334445899999999999999999998888888874
No 347
>PLN02826 dihydroorotate dehydrogenase
Probab=46.10 E-value=3e+02 Score=29.79 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=59.0
Q ss_pred CceEEEEecCHHHHhchHHHHhh-----cCeeEEe-----C-Cccc-----CCC-Cc---hhHHHHHHHHHHHHHHc--C
Q 010449 234 NIQLMSKVENQEGVVNFDDILRE-----TDSFMVA-----R-GDLG-----MEI-PV---EKIFLAQKMMIYKCNLV--G 291 (510)
Q Consensus 234 ~~~IiakIEt~~av~nldeI~~~-----~DgI~Ig-----r-gDLg-----~e~-~~---~~v~~~qk~ii~~~~~~--g 291 (510)
.+.|+.||=--..-+++++|++. +|||++. | +|+- .+. |+ +-.+...+.+-...++. .
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ 341 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK 341 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence 58899999322222344555543 5999876 3 3331 111 11 22233444444444444 4
Q ss_pred CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCC-CCCHHHHHHHHHHHHHHHhc
Q 010449 292 KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAA-GAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 292 kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~-G~yP~~~V~~m~~i~~~aE~ 357 (510)
.|+|-.+-+. ...|++..+..||+++.+..--.. | | ..+++|+++.+.
T Consensus 342 ipIIgvGGI~------------sg~Da~e~i~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~ 390 (409)
T PLN02826 342 IPLVGCGGVS------------SGEDAYKKIRAGASLVQLYTAFAYEG--P----ALIPRIKAELAA 390 (409)
T ss_pred CcEEEECCCC------------CHHHHHHHHHhCCCeeeecHHHHhcC--H----HHHHHHHHHHHH
Confidence 6887766654 357899999999999999531111 2 3 355566665554
No 348
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=46.03 E-value=68 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAV 81 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i 81 (510)
.+.++++++.|++.+.+..-+.+..+..+.+..++..+++++.++-|
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i 62 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIV 62 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56788999999999999988888888899999999998887765433
No 349
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=46.00 E-value=52 Score=33.94 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=46.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
.+..-+=. + +.+.+++.+++|.+..=+..||.+.++..+.-+.+++.+..+|.++
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 45555533 3 6899999999999999999999999999999999999888887665
No 350
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=45.63 E-value=1.1e+02 Score=24.99 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCCCHHHHHHH-HHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCC-CC
Q 010449 31 ASRSVPMLEKL-LRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTK-GP 88 (510)
Q Consensus 31 ~~~~~~~l~~l-i~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~-Gp 88 (510)
.+.+-|.+.++ -..|+.++|-.-++|......++++.+++ |..++|-.|-+ ||
T Consensus 18 ~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G~~~~itpDGPrGP 72 (74)
T PF04028_consen 18 RSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----GYSIAITPDGPRGP 72 (74)
T ss_pred cCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----CCeEEEeCCCCCCC
Confidence 46778888884 45799999999889998888888777773 77889988866 55
No 351
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.50 E-value=60 Score=35.77 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=41.2
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 20 PKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 20 ~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
.+.++-+-+|+.-.+.+..+.|+++|++++-++-+||..+...+.++.+|+
T Consensus 215 g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 215 GRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 356677777765567899999999999999999999998776666666665
No 352
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.49 E-value=45 Score=34.14 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=44.8
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH--HhchHHHHhh-cCeeEEeC
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~DgI~Igr 264 (510)
+-.+.+.+ +.+.+.|+|||.+.. -+.++++++.+.+. ..+. +|-.-| .+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea-~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~----i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQV-REAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIV----TEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCce----EEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 33455666 567889999999975 57788888887663 2222 222223 3688888887 89999983
No 353
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=45.49 E-value=1.6e+02 Score=31.50 Aligned_cols=121 Identities=13% Similarity=0.204 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+.-..+.+.-..|++.+...+ ..-++++.+.+..++- .+++.
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEe
Confidence 4556889999999874 3555555566777889999666542 3556666666655432 21111
Q ss_pred HH-HHHHHHhcCCCCCCchHHHHHHHHHHHHhcC-----CcEEEEEcCCchHHHHHHhh-----CC-CCcEEEE
Q 010449 362 RA-VFKEMIRSTPLPMSPLESLASSAVRTANKAR-----AKLIVVLTRGGTTAKLVAKY-----RP-AVPILSV 423 (510)
Q Consensus 362 ~~-~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-----a~aIvv~T~sG~tA~~iSr~-----RP-~~PIiav 423 (510)
.. .+. .....+....+-....+.++.++++ .+.||+.+-+|.++.-++++ ++ ...|+++
T Consensus 192 ~~~~~~---~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 192 QDTAWE---GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred cCcccc---CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 00 000 0000011112223344556666653 68999999999887666543 24 4557777
No 354
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.25 E-value=1.7e+02 Score=25.52 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHH-H---------HHHHHHHHHHHHHhcCCc
Q 010449 21 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHE-Y---------QQETLNNLRAAMHNTQIL 78 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~-~---------~~~~i~~ir~~~~~~~~~ 78 (510)
..++..+..+...+.+.++.|.++|++.+++++...+.+ . +.++++.++.+.+ .|.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~ 142 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE-AGIP 142 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH-TTSE
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH-cCCC
Confidence 344444443444449999999999999999999999987 3 2334555555443 4544
No 355
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=45.22 E-value=3.2e+02 Score=29.42 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCce--EEeccCCCCCCCHHHHHHHHHHHHHHHhccc
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC--VMLSGESAAGAYPEIAVKIMRRICIEAESSL 359 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~--imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~ 359 (510)
-+...|+..|.|+.+. .|..+....+...-..|++. +.+.++ ..-++++...+++++- ..
T Consensus 78 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g~-----~~~~a~~~a~~~~~~~-g~- 139 (409)
T TIGR02079 78 GFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVGD-----TFDQCAAAAREHVEDH-GG- 139 (409)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHHHhc-CC-
Confidence 4556799999999774 34444444556667789984 444432 2446666655554432 21
Q ss_pred chHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 360 DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
+|-..|. .| ...+.-..-+.++.++++ .+.||+..-+|.+..-+++ ++|...|+++
T Consensus 140 ~~~~~~~-------~~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigV 201 (409)
T TIGR02079 140 TFIPPFD-------DP-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGV 201 (409)
T ss_pred EEeCCCC-------CH-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1211111 11 112233445777777774 6999999999987655544 6799999999
No 356
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=45.19 E-value=3.8e+02 Score=27.95 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.7
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHh
Q 010449 18 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHN 74 (510)
Q Consensus 18 ~~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~ 74 (510)
.-.++|+|+.+- +....+.--+-++.|.+..-|+ ..++++.++..+.++++..+
T Consensus 142 ~~e~~kliA~V~-saeEA~vA~eTLE~GaDgVll~--~~d~~eIk~~~~~~~e~~~E 195 (376)
T COG1465 142 QHEKVKLIAGVK-SAEEARVALETLEKGADGVLLD--SDDPEEIKKTAEVVEEAESE 195 (376)
T ss_pred hccceEEEEEec-cHHHHHHHHHHHhccCceEEeC--CCCHHHHHHHHHHHHHhccc
Confidence 347899999885 3344566667789999998865 45899999999999888753
No 357
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=45.18 E-value=76 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEeh
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTAT 298 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~-gkpvivaT 298 (510)
++.+++.+.+.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +..+..+...|.++ ++|.+.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 56666777777777776655444433 6788888888888776322 24556677777776 99999863
No 358
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.10 E-value=1.5e+02 Score=28.76 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=58.0
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHH------------
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIF------------ 277 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~------------ 277 (510)
|.+=...+.+++..+.+.|-+.|-.. +=.-.-|+.+++-+..+.+..+.+.||-|-- +..+.+.
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~-iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV---~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRA-IEITLRTPNALEAIEALRKEFPDLLVGAGTV---LTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--E-EEEETTSTTHHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEecCCccHHHHHHHHHHHCCCCeeEEEec---cCHHHHHHHHHcCCCEEEC
Confidence 34444555666666655555444221 2222345666666666665555566664421 1222222
Q ss_pred -HHHHHHHHHHHHcCCCeE--EehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 278 -LAQKMMIYKCNLVGKPVV--TATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 278 -~~qk~ii~~~~~~gkpvi--vaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..-.++++.|+++|.|++ ++| -+++..|...|+|.+=+=
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~T----------------ptEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 87 PGFDPEVIEYAREYGIPYIPGVMT----------------PTEIMQALEAGADIVKLF 128 (196)
T ss_dssp SS--HHHHHHHHHHTSEEEEEESS----------------HHHHHHHHHTT-SEEEET
T ss_pred CCCCHHHHHHHHHcCCcccCCcCC----------------HHHHHHHHHCCCCEEEEe
Confidence 234689999999999985 433 356788999999998774
No 359
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.03 E-value=1.5e+02 Score=30.21 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=57.1
Q ss_pred HHHHHhccCcCCCCEEEEc------CCCCHHHHHHHH-HHhccCCCCceEEEEecCHHHHhchHHHHhh-----cCeeEE
Q 010449 195 KEDILRWGVPNNIDMIALS------FVRKGSDLVNVR-KVLGPHAKNIQLMSKVENQEGVVNFDDILRE-----TDSFMV 262 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~s------fV~sa~dv~~vr-~~l~~~~~~~~IiakIEt~~av~nldeI~~~-----~DgI~I 262 (510)
.+.+.++.++.|+|+|++. +-=|.++=+++- ...+..+.++.|++-+-+ +.+..-+.++. +|++|+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEE
Confidence 3344478899999999874 333444444443 344444567888988842 34444344443 599988
Q ss_pred eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 263 ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 263 grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-+--+.- ...+.+...-+.|.+ +.+.|+++-
T Consensus 106 ~pP~y~~-~s~~~i~~~f~~v~~---a~~~pvilY 136 (296)
T TIGR03249 106 LPPYLIN-GEQEGLYAHVEAVCE---STDLGVIVY 136 (296)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHh---ccCCCEEEE
Confidence 7644321 233455555555544 457898874
No 360
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=44.91 E-value=1.3e+02 Score=30.93 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=64.5
Q ss_pred HHHHhccCcCCCCEEEEc------CCCCHHHHHHHHH-HhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeC
Q 010449 196 EDILRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~s------fV~sa~dv~~vr~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igr 264 (510)
+.+.+|.++.|+|+|++. +--|.++=.++-+ ..+..+..+.+|+-+= |.++++....--+. +||+|+-+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 333478899999999873 3334455444433 3444456788998873 45666555544444 69999875
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhH
Q 010449 265 GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 265 gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv 315 (510)
-.+- ..+.+.+..--+.|.+++ +.|+|+- +.|..|...+
T Consensus 108 PyY~-k~~~~gl~~hf~~ia~a~---~lPvilY--------N~P~~tg~~l 146 (299)
T COG0329 108 PYYN-KPSQEGLYAHFKAIAEAV---DLPVILY--------NIPSRTGVDL 146 (299)
T ss_pred CCCc-CCChHHHHHHHHHHHHhc---CCCEEEE--------eCccccCCCC
Confidence 3332 222345555555665544 8999874 4455555443
No 361
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.67 E-value=33 Score=35.31 Aligned_cols=63 Identities=8% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
.++. +-+++.|+|.|.+=.. ++++++++.+.++..+.++ ++|-.-|+ +|+.++++. .|.|.+|
T Consensus 199 leqa-~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 199 PKEA-IAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 3445 4568899999999755 8999999999886544442 46665665 678888877 7999887
No 362
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.65 E-value=1.8e+02 Score=29.48 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=55.3
Q ss_pred cCeeEEeCCccc--CCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEecc
Q 010449 257 TDSFMVARGDLG--MEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSG 333 (510)
Q Consensus 257 ~DgI~IgrgDLg--~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~ 333 (510)
.||+++. |--| ..+..++-..+-+.+++.+ +-..|+++.+. ..+..|..+.+. |-..|+|++|+..
T Consensus 36 v~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv~---------~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 36 TDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGTG---------SNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred CCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeecC---------CchHHHHHHHHHHHHHcCCCEEEECC
Confidence 6899875 2222 3344445444444444443 22367765322 234456655555 5566999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 334 ESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 334 Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
=.-....+.+.+++.+.|+..++-
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCC
Confidence 655555678889999999887754
No 363
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=44.58 E-value=57 Score=30.00 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=33.0
Q ss_pred eeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 259 SFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 259 gI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
.+++|--|.+...+.+++..-.+++++.+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4566677887777888899999999999999999888754
No 364
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.58 E-value=81 Score=27.18 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe
Q 010449 215 VRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV 294 (510)
Q Consensus 215 V~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv 294 (510)
..|.=-++.+++++++.|-+..+.+. ++..+++.+.-.|.|+++| .+....+++-+.|...|+||
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ipv 75 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG-----AYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGIKL 75 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCCCE
Confidence 34555678889999888876665543 3445666666789999985 67788889999999999999
Q ss_pred EE
Q 010449 295 VT 296 (510)
Q Consensus 295 iv 296 (510)
.+
T Consensus 76 ~~ 77 (99)
T cd05565 76 VT 77 (99)
T ss_pred EE
Confidence 76
No 365
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=44.39 E-value=2.5e+02 Score=28.89 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=60.7
Q ss_pred hhcHHHHHhccCcCCCCEEEEcCCC----------------CHHHHHHHHHHhccCCCCceEEEEe-----cCH-HHHhc
Q 010449 192 EKDKEDILRWGVPNNIDMIALSFVR----------------KGSDLVNVRKVLGPHAKNIQLMSKV-----ENQ-EGVVN 249 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~sfV~----------------sa~dv~~vr~~l~~~~~~~~IiakI-----Et~-~av~n 249 (510)
+.+.....+.+.+.|+|+|=+.+-. +++-+.++-+.+.+. -+..+.+|| ++. +.++-
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~g~~~~~~~~~~~ 152 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRIGWDDAHINAVEA 152 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEcccCCCcchHHHH
Confidence 3344444355667788988665432 222233333333221 247799998 222 12222
Q ss_pred hHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHH-HcCCc
Q 010449 250 FDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAV-LDGTD 327 (510)
Q Consensus 250 ldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av-~~G~D 327 (510)
+..+.+. +|+|.+....-. -+.+. +.....+-......+.|++.... .-|.+ |+..++ ..|+|
T Consensus 153 a~~l~~~G~d~i~vh~r~~~--~~~~~-~~~~~~i~~i~~~~~ipvi~nGg---------I~~~~---da~~~l~~~gad 217 (319)
T TIGR00737 153 ARIAEDAGAQAVTLHGRTRA--QGYSG-EANWDIIARVKQAVRIPVIGNGD---------IFSPE---DAKAMLETTGCD 217 (319)
T ss_pred HHHHHHhCCCEEEEEccccc--ccCCC-chhHHHHHHHHHcCCCcEEEeCC---------CCCHH---HHHHHHHhhCCC
Confidence 2222222 588877421111 11110 11123333334446799987443 44444 455555 46899
Q ss_pred eEEec
Q 010449 328 CVMLS 332 (510)
Q Consensus 328 ~imLs 332 (510)
++|+.
T Consensus 218 ~Vmig 222 (319)
T TIGR00737 218 GVMIG 222 (319)
T ss_pred EEEEC
Confidence 99995
No 366
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=44.32 E-value=36 Score=36.50 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=57.8
Q ss_pred cHHHHHhccCcCC-CCEEEEcCCC--C---------------HHHHHHHHHHhccCC--CCceEEEEecCHHHHhchHHH
Q 010449 194 DKEDILRWGVPNN-IDMIALSFVR--K---------------GSDLVNVRKVLGPHA--KNIQLMSKVENQEGVVNFDDI 253 (510)
Q Consensus 194 D~~di~~~a~~~g-~d~I~~sfV~--s---------------a~dv~~vr~~l~~~~--~~~~IiakIEt~~av~nldeI 253 (510)
+.+++ ..+++.+ +|+|.++--. + ..-+.++++.+...+ .++.||+ .-|+.+-.++
T Consensus 226 ~~~~~-a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv 300 (392)
T cd02808 226 GEGDI-AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADV 300 (392)
T ss_pred CHHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHH
Confidence 33455 3445545 9999998874 1 223344555554332 3567776 3456666666
Q ss_pred Hhh----cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010449 254 LRE----TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQ 299 (510)
Q Consensus 254 ~~~----~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTq 299 (510)
+++ +|++.+||.=|-. +-......|+.-.+|+++|||
T Consensus 301 ~kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 301 AKALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC
Confidence 654 7999999865532 112345889999999999999
No 367
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=44.31 E-value=72 Score=31.31 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCeEEEEec-----CCCCCC-HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 010449 19 LPKTKIVCTL-----GPASRS-VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL-CAVML 83 (510)
Q Consensus 19 ~~~tkIi~Ti-----Gp~~~~-~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~-v~i~~ 83 (510)
...+|||++- .|+..+ .+.+++|.+.|.|+++|-..=-+.+...++++..+++.+....| +++.+
T Consensus 116 ~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~M 187 (228)
T TIGR01093 116 KGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSM 187 (228)
T ss_pred HCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3579999997 233222 35788899999999999988778888888888777765444455 44444
No 368
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.22 E-value=1.9e+02 Score=29.28 Aligned_cols=91 Identities=10% Similarity=-0.074 Sum_probs=51.5
Q ss_pred HhccCcCCCCEEEEc------CCCCHHHHHHHHH-HhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeCCcc
Q 010449 199 LRWGVPNNIDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVARGDL 267 (510)
Q Consensus 199 ~~~a~~~g~d~I~~s------fV~sa~dv~~vr~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~IgrgDL 267 (510)
.++.++.|+|+|++. +-=|.++-.++-+ ..+..+ . +++.+- +.++++-...-.+. +|++|+.+-.+
T Consensus 26 i~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 26 CENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 368889999999873 2234444444433 333332 2 777774 34444444443333 69999876544
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 268 GMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 268 g~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-...+.+.+...-+.+.+ ..|+++.
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 222233455555555555 6888864
No 369
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.20 E-value=26 Score=36.48 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.3
Q ss_pred CeEEEEecCCCCCCH--HHHHHHHHhCCCeEEEeecC
Q 010449 21 KTKIVCTLGPASRSV--PMLEKLLRAGMNVARFNFSH 55 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~--~~l~~li~~G~~~~RiN~sh 55 (510)
...+++.|+..+... +..+.+-++|++.+=||+|+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~sc 137 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYY 137 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 368899996654322 56667778899999999985
No 370
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=44.05 E-value=1e+02 Score=32.92 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEc---CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhch
Q 010449 174 ERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALS---FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNF 250 (510)
Q Consensus 174 s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~s---fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nl 250 (510)
+..|=.+|+.++ ++ +...+ +.+..|.|.+.=| -+.|.+|+.++.+.|++.+....|-.|+=.-..++.+
T Consensus 148 pG~GG~Lp~~KV-----~~-~ia~~--R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~ 219 (368)
T PF01645_consen 148 PGEGGHLPGEKV-----TE-EIARI--RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI 219 (368)
T ss_dssp TTT--EE-GGG-------H-HHHHH--HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH
T ss_pred ccCcceechhhc-----hH-HHHHH--hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH
Confidence 445566777664 33 33444 4677888877644 4778888888888888888788999999666555555
Q ss_pred HHHHhh--cCeeEEeCCcccC---------CCCchhHHHHHHHHHHHHHHcC---CCeEEehhhhHhhhcCCCCChHhHH
Q 010449 251 DDILRE--TDSFMVARGDLGM---------EIPVEKIFLAQKMMIYKCNLVG---KPVVTATQMLESMIKSPRPTRAEAT 316 (510)
Q Consensus 251 deI~~~--~DgI~IgrgDLg~---------e~~~~~v~~~qk~ii~~~~~~g---kpvivaTqmLeSM~~~~~PtraEv~ 316 (510)
...+.. +|.|.|.-++=|. +.|++ +.....++.+...+.| +..++++-=| .--.
T Consensus 220 ~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~ 287 (368)
T PF01645_consen 220 AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASGGL-----------RTGD 287 (368)
T ss_dssp HHHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEESS-------------SHH
T ss_pred HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHH
Confidence 543322 6999998655443 22222 1223333444444444 3444444333 2357
Q ss_pred HHHHHHHcCCceEEec
Q 010449 317 DVANAVLDGTDCVMLS 332 (510)
Q Consensus 317 Dv~~av~~G~D~imLs 332 (510)
|++.|+..|||++.+.
T Consensus 288 dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 288 DVAKALALGADAVYIG 303 (368)
T ss_dssp HHHHHHHCT-SEEE-S
T ss_pred HHHHHHhcCCCeeEec
Confidence 9999999999999875
No 371
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=43.95 E-value=2.4e+02 Score=28.06 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=49.1
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEE
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMV 262 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~I 262 (510)
-.+.|+|+|.+ +++..+++.++-+++++.|...-+.-.=+|+ ++.++.++...|.|++
T Consensus 80 fa~agad~It~-H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 80 FAKAGADIITF-HAEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHhCCCEEEE-EeccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 36789999886 5668889999999999998888888888886 5569999999998887
No 372
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=43.79 E-value=1.7e+02 Score=29.91 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=58.1
Q ss_pred HHHhccCcCC-CCEEEEc------CCCCHHHHHHHHH-HhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEeC
Q 010449 197 DILRWGVPNN-IDMIALS------FVRKGSDLVNVRK-VLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 197 di~~~a~~~g-~d~I~~s------fV~sa~dv~~vr~-~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Igr 264 (510)
.+.++.++.| +|+|++. +.=|.++-.++-+ ..+..+.++.|++.+- |.++++....-.+. +||+|+.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 3337888999 9999876 4445555555543 4444455788999984 45555555554443 69999975
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 010449 265 GDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 297 (510)
Q Consensus 265 gDLg~e~~~~~v~~~qk~ii~~~~~~-gkpviva 297 (510)
-.+- ....+++...-+.+.+ +. +.|+++.
T Consensus 105 P~y~-~~~~~~i~~yf~~v~~---~~~~lpv~lY 134 (290)
T TIGR00683 105 PFYY-KFSFPEIKHYYDTIIA---ETGGLNMIVY 134 (290)
T ss_pred CcCC-CCCHHHHHHHHHHHHh---hCCCCCEEEE
Confidence 4332 1223444444455543 44 6888764
No 373
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=43.71 E-value=50 Score=28.21 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhhCCCCcEEEE
Q 010449 381 SLASSAVRTANKARAKLIVVLTRG---------GTTAKLVAKYRPAVPILSV 423 (510)
Q Consensus 381 ~ia~~av~~A~~~~a~aIvv~T~s---------G~tA~~iSr~RP~~PIiav 423 (510)
..+...++.+.+.+++.||+-++. |+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 456677788899999999988862 6788899999899999976
No 374
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=43.58 E-value=22 Score=33.63 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=43.6
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
+-+++.|+|.|.+=.. ++++++++.+.+...+.+ .+||-.-|+ +|+.++++. .|+|.+|
T Consensus 94 ~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 94 EEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 4467899999999887 779999999988766666 455555555 688888887 4999887
No 375
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=43.51 E-value=80 Score=29.16 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL 78 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~ 78 (510)
.+.+++++++|++.+.|..-.++..++.+.++.+++..+.++.+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 57899999999999999998888888888898888877655544
No 376
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.33 E-value=33 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=24.2
Q ss_pred cCCCCccccCCCCCEEEEeCCeEEEEEEEEe
Q 010449 126 MSYKKLPVDVKPGNTILCADGTITLTVLSCD 156 (510)
Q Consensus 126 v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~ 156 (510)
++++. ..++++||+|.+..+++..+|+++.
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 44444 3678999999999999999998873
No 377
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.21 E-value=67 Score=32.58 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=44.3
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
..+++ ..+++.|+|+|.+-.+ ++++++++.++++.. .+++ ||=--|+ +|+.++++. +|+|.+|
T Consensus 190 t~eea-~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 190 TLEEA-EEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 34455 4567889999999776 668888888877543 2333 3333444 788888887 7999886
No 378
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=43.21 E-value=78 Score=30.04 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
.+.+++++++|++.+.+...+.+..+..+.++.+++.++.++.++
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPL 68 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 467889999999999999888887777788888887776666543
No 379
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=43.11 E-value=73 Score=31.69 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
-++.+++.+.+.+.++.|-+--+..+. +|++++++..|.|+-+-.+ +..+..+-+.|+++++|++.+.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 345556666666777776665444333 5778888888887776322 3457778899999999998753
No 380
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=42.81 E-value=2.7e+02 Score=28.57 Aligned_cols=129 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
...++.+.... .+.+...+......+.+..-++. .+-||+. |-.+|+++=...-+++++.|++.|.+| +-
T Consensus 58 ~~~~~~~a~~~--~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD----~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG 131 (276)
T cd00947 58 VAMVKAAAERA--SVPVALHLDHGSSFELIKRAIRAGFSSVMID----GSHLPFEENVAKTKEVVELAHAYGVSVEAELG 131 (276)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHhCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Q ss_pred ehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEeccCCCCCCC----HHHHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVMLSGESAAGAY----PEIAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imLs~Eta~G~y----P~~~V~~m~~i~~~a 355 (510)
...=-|.-...-.-......++..++.. |+|++..|--|+.|.| |.--.+.+.+|...+
T Consensus 132 ~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 132 RIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred eecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
No 381
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.76 E-value=63 Score=32.82 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=43.9
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH--HhchHHHHhh-cCeeEEeC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~DgI~Igr 264 (510)
+.+.+ ..+.+.|+|+|.+..+ +.++++++.+.+.. ++++. -.-| .+|+.++++. +|+|-++.
T Consensus 191 s~eea-~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~~---~ipi~----AiGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 191 TLEQL-KEALEAGADIIMLDNM-SPEELREAVALLKG---RVLLE----ASGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CHHHH-HHHHHcCCCEEEECCc-CHHHHHHHHHHcCC---CCcEE----EECCCCHHHHHHHHHcCCCEEEEEe
Confidence 44556 5668899999999988 47888888776642 33333 2233 3788888887 79999874
No 382
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=42.65 E-value=1.2e+02 Score=29.39 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=47.2
Q ss_pred CCCeEEEEecC--CCCCC----HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE-EEEe
Q 010449 19 LPKTKIVCTLG--PASRS----VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC-AVML 83 (510)
Q Consensus 19 ~~~tkIi~TiG--p~~~~----~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v-~i~~ 83 (510)
..++|||++-= ..+.+ .+.+++|.+.|.++++|-..-.+.+...++++..++..+..+.|+ ++.+
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 36799999873 12222 367788999999999999999999999998888888877666664 4555
No 383
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.61 E-value=35 Score=34.63 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=43.2
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHH--HhchHHHHhh-cCeeEEe
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEG--VVNFDDILRE-TDSFMVA 263 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~a--v~nldeI~~~-~DgI~Ig 263 (510)
..+.+ ..|.+.|+|+|.+..+ ++++++++.+.+.. .+++.| .-| .+|+.++++. +|+|-+|
T Consensus 187 t~eea-~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~~---~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 187 SLEEA-EEAAEAGADIIMLDNM-KPEEIKEAVQLLKG---RVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---CCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 44556 5678899999999887 55888888776642 233333 333 4688888887 8999985
No 384
>PRK08185 hypothetical protein; Provisional
Probab=42.59 E-value=1.9e+02 Score=29.66 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHh----hhcC
Q 010449 233 KNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLES----MIKS 307 (510)
Q Consensus 233 ~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeS----M~~~ 307 (510)
.++.+...+..-..++.+..-++. .+.||+.--+ +|+++-...-+++++.|+++|.++=.-=-.+-. ....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 367888888887766555555544 4789997544 588888888999999999999998221111110 0000
Q ss_pred CCC-ChHhHHHHHHHHHc-CCceEEeccCCCCCCCHH
Q 010449 308 PRP-TRAEATDVANAVLD-GTDCVMLSGESAAGAYPE 342 (510)
Q Consensus 308 ~~P-traEv~Dv~~av~~-G~D~imLs~Eta~G~yP~ 342 (510)
... ......+...++.. |+|++-.|--|+.|.||-
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 000 01122334667777 999999999999999965
No 385
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=42.45 E-value=1.5e+02 Score=29.82 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010449 224 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 301 (510)
Q Consensus 224 vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL 301 (510)
+|+.+.+...-.-.+..+-++... ||+.. .|.++|. .|=+.-.+..+ ..++.+|+..|.++++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V----- 67 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITT----EVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV----- 67 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHH----HHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 455554432223355555555443 45554 4999995 23333344444 4677889999999887
Q ss_pred HhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 302 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-|.+ +-..+..++..|+++||+.
T Consensus 68 ----Rvp~~---~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 ----RPPWN---EPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ----ECCCC---CHHHHHHHhcCCCCEEEec
Confidence 33344 4456677888999999996
No 386
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=42.42 E-value=3.9e+02 Score=27.32 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.+..+++..|.|+.+- .|..|-...+++....|+.-++--.- -..-=++-+++.++.|.++-+
T Consensus 87 AlalaAk~~giPa~IV-----------vP~~AP~~Kv~a~~~Yga~ii~~e~~------~~sRE~va~~ltee~g~~~i~ 149 (323)
T KOG1251|consen 87 ALALAAKILGIPATIV-----------VPKDAPICKVAATRGYGANIIFCEPT------VESRESVAKDLTEETGYYLIH 149 (323)
T ss_pred HHHHHHHhcCCCeEEE-----------ecCCChHHHHHHHHhcCceEEEecCc------cchHHHHHHHHHHhcCcEEeC
Confidence 4667788899998542 69999999999999999988876311 111123345555555554322
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCch----HHHHHHhhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGT----TAKLVAKYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~----tA~~iSr~RP~~PIiav 423 (510)
+. + .+.-..--.++ |.++-++. ..++|||.--.|- +|..+-.++|.|.|+++
T Consensus 150 Py--~-----~p~vIaGqgTi---A~ElleqVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~v 206 (323)
T KOG1251|consen 150 PY--N-----HPSVIAGQGTI---ALELLEQVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAV 206 (323)
T ss_pred CC--C-----CcceeeccchH---HHHHHHhhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEe
Confidence 11 0 11111111233 44555554 5688998887775 36666779999999999
No 387
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=42.22 E-value=86 Score=30.68 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-++.+++.+.+.+.++.+-+.-+.. .-+|++++++-.|.|+.+-.+. ..+..+-+.|+++++|.+.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4455666777777766655544433 2367888888889888864332 35667889999999999875
No 388
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=42.18 E-value=59 Score=35.01 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=59.8
Q ss_pred hcHHHHHhccCcCCCCEEEEc-------CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 193 KDKEDILRWGVPNNIDMIALS-------FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~s-------fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.|...+ ++..+.|+.+|... -|-+.+++.+.++.+.++|-. ++-||+. .+.+-|..|.+
T Consensus 11 ~d~v~l-~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~---~~vvEs~----------pv~e~Ik~g~~ 76 (394)
T TIGR00695 11 NDPVSL-EDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLH---WSVVESV----------PVHEAIKTGTG 76 (394)
T ss_pred CCcchH-HHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCe---EEEEeCC----------CccHHHHcCCC
Confidence 444455 55667899998843 367889999999999888744 3335662 22345555543
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
+.++-.+..|+.|+..-++|.|+++-
T Consensus 77 ------~rd~~Ienyk~~irNla~~GI~vicY 102 (394)
T TIGR00695 77 ------NYGRWIENYKQTLRNLAQCGIKTVCY 102 (394)
T ss_pred ------cHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34566677789999999999999874
No 389
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=41.79 E-value=2.8e+02 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=29.7
Q ss_pred HHHHHHHhc-----CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 385 SAVRTANKA-----RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 385 ~av~~A~~~-----~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
-+.++.+++ ..+.||+..-+|.|+.-+++ ++|.+||+++
T Consensus 169 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigV 216 (331)
T PRK03910 169 CALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGV 216 (331)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345555554 37899999999999755544 5799999999
No 390
>PRK08185 hypothetical protein; Provisional
Probab=41.77 E-value=78 Score=32.56 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
.+..-+ .-+.+.+.+++.+++|.+.+=+.-||-+.++..+.-..+.+.++.+|.++
T Consensus 70 PV~lHL-DHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 70 PFVIHL-DHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 344444 33457999999999999999999999999998888888888888887665
No 391
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=41.65 E-value=54 Score=32.53 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=92.5
Q ss_pred HHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHH
Q 010449 245 EGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVL 323 (510)
Q Consensus 245 ~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~ 323 (510)
...+.++.+++. .|+|||| |=+|+. .++ ..+++++.+++.+|++. .|.. .+.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt--~~~----~~~~v~~ik~~~lPvil------------fp~~------~~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT--YEK----TDTLIEALRRYGLPIIL------------FPSN------PTNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc--HHH----HHHHHHHHhccCCCEEE------------eCCC------ccccC
Confidence 344566677765 6999999 433332 123 34456666788899996 3533 24555
Q ss_pred cCCceEEecc-----C-CCCCCCHHHHHHHHHHHHHHH--hccc--chHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc
Q 010449 324 DGTDCVMLSG-----E-SAAGAYPEIAVKIMRRICIEA--ESSL--DYRAVFKEMIRSTPLPMSPLESLASSAVRTANKA 393 (510)
Q Consensus 324 ~G~D~imLs~-----E-ta~G~yP~~~V~~m~~i~~~a--E~~~--~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~ 393 (510)
.|+|+++.-. . ..+-....+++..+.+...++ |.++ +...--.+.....+.|.+..+ ++..+.-+++-+
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~-~aa~~~lA~~~~ 148 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKED-LAAYAAMAEEML 148 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHH-HHHHHHHHHHHc
Confidence 7899988732 1 121122344555444433110 1111 111000011111223344444 555555666668
Q ss_pred CCcEEEEEcCCch-------HHHHHHhhCCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEEEEeCC
Q 010449 394 RAKLIVVLTRGGT-------TAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEG 459 (510)
Q Consensus 394 ~a~aIvv~T~sG~-------tA~~iSr~RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P~l~~~ 459 (510)
+-+.+..--.||. ..+.+.+.-...||+.- - +.++...++.+. ..|.--+.+..
T Consensus 149 g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vG-------G----GIrs~e~a~~l~-~aGAD~VVVGs 209 (223)
T TIGR01768 149 GMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVG-------G----GIRSVEKAREMA-EAGADTIVTGN 209 (223)
T ss_pred CCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEe-------c----CCCCHHHHHHHH-HcCCCEEEECc
Confidence 9896666644443 24445555457899665 1 246777777765 44655555533
No 392
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.55 E-value=1e+02 Score=26.83 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 217 KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 217 sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
|.==+...+++..+.|.+..|.|.=|+ .+++-+...|.+++|| .+...-+++-+.+...|+||-+
T Consensus 14 TSlLV~Km~~aA~~kg~~~~I~A~s~~-----e~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 14 TSLLVTKMKKAAESKGKDVTIEAYSET-----ELSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEechh-----HHHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEE
Confidence 334466777888888889888887766 3444455789999996 6778888999999999999865
No 393
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=41.51 E-value=1.3e+02 Score=31.44 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=90.9
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh--cCeeEEeCCcccC-CCCc----hhHHHHHHHHHHHHHHcC
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE--TDSFMVARGDLGM-EIPV----EKIFLAQKMMIYKCNLVG 291 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~--~DgI~IgrgDLg~-e~~~----~~v~~~qk~ii~~~~~~g 291 (510)
|+-+|++++-. ..+.+.+-|=-.-|+ +++-+++.. .-|+=+=.-|=.. +-++ ++++..++.+-++..+-|
T Consensus 2 I~G~R~~lgv~-~RPL~~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG 80 (309)
T PF00016_consen 2 IEGIRELLGVY-DRPLLGTIIKPKLGLSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETG 80 (309)
T ss_dssp HHHHHHHHTSS-SS-EEEEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeeehhhhhc-cceEEccccCcceeecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccc
Confidence 45677777633 345555555443455 344444443 2344333334332 2222 588888888888888999
Q ss_pred CCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhccc-chHHHHHHHH
Q 010449 292 KPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSL-DYRAVFKEMI 369 (510)
Q Consensus 292 kpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~-~~~~~~~~~~ 369 (510)
++++.+-++- .|+-.|+.+=+. ++..|++++|++ ..-+-.-+++.|.+.++...-.+ .++...--+.
T Consensus 81 ~~~ly~~NiT-------~~~~~em~~ra~~a~~~G~~~vmv~----~~~~G~~~~~~l~~~~~~~~~~ih~H~A~~ga~~ 149 (309)
T PF00016_consen 81 EKKLYAANIT-------ADTPDEMIERAEYAKEAGANAVMVN----VLTAGFSALQSLAEDARDNGLPIHAHRAGHGAFT 149 (309)
T ss_dssp S--EEEEEE--------SSSHHHHHHHHHHHHHHTGSEEEEE----HHHHCHHHHHHHHHHHHHHTSEEEEETTTHHHHH
T ss_pred eecceecccc-------cccHHHHHHhhhhhhhhccchhhcc----cccccccccchhhhhhcccceeeeeccccchhhc
Confidence 9987764432 455556655444 788999999997 22223456777777766554222 2333222222
Q ss_pred hcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCch
Q 010449 370 RSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGT 406 (510)
Q Consensus 370 ~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T~sG~ 406 (510)
+ .|..-..+.+. -.+.+-.+|+.|.+-|.-|+
T Consensus 150 r---~~~~Gis~~vl--~kl~RLaGaD~vh~~t~~Gk 181 (309)
T PF00016_consen 150 R---SPDHGISFRVL--GKLMRLAGADHVHFGTPYGK 181 (309)
T ss_dssp S---SSSSEEHHHHH--HHHHHHHT-SEEEEE-SSSS
T ss_pred c---cccCccceeee--ccceecceeeeeccCccccc
Confidence 2 12222233332 34566679999999998875
No 394
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.47 E-value=4e+02 Score=27.18 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=71.3
Q ss_pred CCCEEEEcCC-----------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-------cCeeEEe----
Q 010449 206 NIDMIALSFV-----------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-------TDSFMVA---- 263 (510)
Q Consensus 206 g~d~I~~sfV-----------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-------~DgI~Ig---- 263 (510)
++|+|-+.+- ++.+.+.++-+.+++. .++.+++||=--...+++.++++. +|||.+.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~ 197 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLG 197 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCC
Confidence 5787766443 2455555555555433 357899999321122234444442 2456531
Q ss_pred --------CCc--cc--CCC-Cc---hhHHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcC
Q 010449 264 --------RGD--LG--MEI-PV---EKIFLAQKMMIYKCNLVG--KPVVTATQMLESMIKSPRPTRAEATDVANAVLDG 325 (510)
Q Consensus 264 --------rgD--Lg--~e~-~~---~~v~~~qk~ii~~~~~~g--kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G 325 (510)
|.- |. ... |+ .--+...+.+-...++.+ .|+|-..-+. -..|+..+++.|
T Consensus 198 ~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------------s~~da~e~l~aG 265 (294)
T cd04741 198 NGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------------DGRGAFRMRLAG 265 (294)
T ss_pred ccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------------CHHHHHHHHHcC
Confidence 221 11 111 11 224455555555555553 7988765544 246788888899
Q ss_pred CceEEeccCCCCCCCHHHHHHHHHHHHHHHhc
Q 010449 326 TDCVMLSGESAAGAYPEIAVKIMRRICIEAES 357 (510)
Q Consensus 326 ~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~ 357 (510)
||++|+..-. +.+-| ...++|+++.+.
T Consensus 266 A~~Vqv~ta~-~~~gp----~~~~~i~~~L~~ 292 (294)
T cd04741 266 ASAVQVGTAL-GKEGP----KVFARIEKELED 292 (294)
T ss_pred CCceeEchhh-hhcCc----hHHHHHHHHHHh
Confidence 9999997433 22334 334455555443
No 395
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.37 E-value=3.6e+02 Score=26.62 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=86.7
Q ss_pred CCCCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCC-ceEEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 187 LPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKN-IQLMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 187 lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~-~~IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
-|.|.--+.+.| .-+.+.|+.+++++-+ -+|+...+|+.++..|-+ +.+.|-=-| =++++-|.+++|+++-=-.
T Consensus 105 NPIl~yG~e~~i-q~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTt---deRmell~~~adsFiYvVS 179 (268)
T KOG4175|consen 105 NPILRYGVENYI-QVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTT---DERMELLVEAADSFIYVVS 179 (268)
T ss_pred cHHHhhhHHHHH-HHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHHHHHHHhhcceEEEEE
Confidence 466777777777 6778899999888866 578889999999876532 223332222 2466777888886553211
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHH
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLV--GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEI 343 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~--gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~ 343 (510)
-.|+.=..+.+...-..+++..|++ .+|+-+- -..-|+.....|+.. +|+++...
T Consensus 180 rmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVG---------FGvst~EHf~qVgsv----aDGVvvGS---------- 236 (268)
T KOG4175|consen 180 RMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVG---------FGVSTPEHFKQVGSV----ADGVVVGS---------- 236 (268)
T ss_pred eccccccHHHHHHHHHHHHHHHHHhcCCCceeEe---------eccCCHHHHHhhhhh----ccceEecH----------
Confidence 1222212234555555555666665 3665431 235667777777665 77777652
Q ss_pred HHHHHHHHHHHHhcc
Q 010449 344 AVKIMRRICIEAESS 358 (510)
Q Consensus 344 ~V~~m~~i~~~aE~~ 358 (510)
.|-++|-++|.-
T Consensus 237 ---kiv~l~g~ae~g 248 (268)
T KOG4175|consen 237 ---KIVKLLGEAESG 248 (268)
T ss_pred ---HHHHHhccCCCc
Confidence 377788888863
No 396
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=41.22 E-value=3.7e+02 Score=26.71 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=26.6
Q ss_pred hccCcCCCCEEEEcCCC----------CHHHHHHHHHHhccCCCCc
Q 010449 200 RWGVPNNIDMIALSFVR----------KGSDLVNVRKVLGPHAKNI 235 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~----------sa~dv~~vr~~l~~~~~~~ 235 (510)
+.+.+.|.|+|=++.-. +.+++.++++.+++.|-.+
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 68 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRI 68 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCc
Confidence 66789999999775322 4778888998888776443
No 397
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=41.02 E-value=88 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 34 SVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 34 ~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
-.+.+++++++|++.+-|..-..+.++..+.++.+++.+++++.++
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~l 59 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPL 59 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCE
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEE
Confidence 4578889999999999999999999999999999999998876543
No 398
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=40.95 E-value=45 Score=34.18 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 195 KEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
.++. +-+++.|+|.|.+=. -++++++++.+.+++.+.++ ++|=.-|+ +|+.++++. .|.|.+|
T Consensus 198 leea-~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 198 IEQA-LTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHH-HHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3345 456789999999987 58899999988886544443 45555555 577777776 6988887
No 399
>PRK06801 hypothetical protein; Provisional
Probab=40.89 E-value=1.7e+02 Score=30.02 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcC-----
Q 010449 234 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKS----- 307 (510)
Q Consensus 234 ~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~----- 307 (510)
.+.+........-++.+++-++. .+.||+.--.| ++++-...-+++.+.|+.+|.+|=..=..+-.....
T Consensus 74 ~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l----~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~ 149 (286)
T PRK06801 74 DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTL----EYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGE 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCC
Q ss_pred -CCCChHhHHHHHHHH-HcCCceEEeccCCCCCCC---HHHHHHHHHHHHHHH
Q 010449 308 -PRPTRAEATDVANAV-LDGTDCVMLSGESAAGAY---PEIAVKIMRRICIEA 355 (510)
Q Consensus 308 -~~PtraEv~Dv~~av-~~G~D~imLs~Eta~G~y---P~~~V~~m~~i~~~a 355 (510)
..-......+...++ .-|+|++-.+-=|+.|+| |-.-.+.+.+|....
T Consensus 150 ~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~ 202 (286)
T PRK06801 150 ADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT 202 (286)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc
No 400
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=40.52 E-value=2e+02 Score=27.77 Aligned_cols=102 Identities=10% Similarity=0.179 Sum_probs=55.7
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEe---c----CHHHHhchHHHHhhcCeeEEeCCc
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKV---E----NQEGVVNFDDILRETDSFMVARGD 266 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakI---E----t~~av~nldeI~~~~DgI~IgrgD 266 (510)
|.+.+.+...+.|++.++++-. +.++...+.+..+..+ ++....=| + ..+-++.+++.+.......| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~-~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGT-DLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 3444435556789998885533 3577777777665544 33322222 1 12233344444332223344 66
Q ss_pred ccCCCCch-h----HHHHHHHHHHHHHHcCCCeEEehh
Q 010449 267 LGMEIPVE-K----IFLAQKMMIYKCNLVGKPVVTATQ 299 (510)
Q Consensus 267 Lg~e~~~~-~----v~~~qk~ii~~~~~~gkpvivaTq 299 (510)
.|.+.... . -..+-+..++.|++.|+||.+-|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 77665321 1 113445667788999999998664
No 401
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=40.48 E-value=3e+02 Score=27.21 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=70.2
Q ss_pred hcHHHHHhccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceE-------EEEecCH-HHHhchHHHHh----h-c
Q 010449 193 KDKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQL-------MSKVENQ-EGVVNFDDILR----E-T 257 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~I-------iakIEt~-~av~nldeI~~----~-~ 257 (510)
++.+|+ +..++.|++.+.+.- .++++-+.++.+.+. .++.+ ..|+..- +.-.++.++++ . +
T Consensus 85 rs~edv-~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~---~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 85 RDDESL-EAALATGCARVNIGTAALENPEWCARVIAEHG---DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred CCHHHH-HHHHHCCCCEEEECchHhCCHHHHHHHHHHhh---hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 345677 666888999776653 466666666655443 22211 1111000 00112333333 2 4
Q ss_pred CeeEEe-CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCC
Q 010449 258 DSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESA 336 (510)
Q Consensus 258 DgI~Ig-rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta 336 (510)
+.+++- |.==|..-|+ ++..+ +++ ++..+.|+|.+.. .-+..++..+.+....|+|++|+..---
T Consensus 161 ~~iiv~~~~~~g~~~G~-d~~~i-~~i---~~~~~ipviasGG---------i~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTGP-NLELL-REV---CARTDAPVVASGG---------VSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccCC-CHHHH-HHH---HhhCCCCEEEeCC---------CCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 666554 2222222232 32222 223 3456899998655 4445555444433346999999987777
Q ss_pred CCCCHHHHH
Q 010449 337 AGAYPEIAV 345 (510)
Q Consensus 337 ~G~yP~~~V 345 (510)
.|.++.+-.
T Consensus 227 ~g~~~~~~~ 235 (241)
T PRK14024 227 AGAFTLPEA 235 (241)
T ss_pred cCCCCHHHH
Confidence 788887654
No 402
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=40.42 E-value=3.2e+02 Score=28.15 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+.+. .|..+.-..+...-..|++.+.... .+.-.+.+...++.++ +...+|
T Consensus 65 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~-~~~~~~ 127 (316)
T cd06448 65 AAAYAARKLGVPCTIV-----------VPESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAEN-DPGPVY 127 (316)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhc-cCCcEE
Confidence 4567899999999764 2333333345556678999777542 2223344444443322 101122
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHHh----hC-CCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR----AKLIVVLTRGGTTAKLVAK----YR-PAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~----a~aIvv~T~sG~tA~~iSr----~R-P~~PIiav 423 (510)
-..| ..|. ..+.-...+.++.++++ .+.+|+..-+|.+..-+++ ++ |..+|+++
T Consensus 128 ~~~~-------~n~~-~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~V 190 (316)
T cd06448 128 VHPF-------DDPL-IWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAV 190 (316)
T ss_pred eCCC-------CCch-hhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 1111 1111 11122234566777664 5899999999988665544 54 99999999
No 403
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.07 E-value=1e+02 Score=26.17 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
-+..+++++.+.|-+..+.+ -++.++++.+...|.|+++| .+...++++-+.+...|+|+.+
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~p----------qi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLAP----------QVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEECc----------hHHHHHHHHHHHhhhcCCCEEE
Confidence 55778888887775543332 24445656666679999875 7888899999999999999875
No 404
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=40.03 E-value=93 Score=30.29 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEeh
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTAT 298 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~-gkpvivaT 298 (510)
++.+++.+.+.+..+.+-+.-|.... ++++++++-.|.|+-+-. . +.....+...|.++ ++|.+.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D---------~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFD---------N-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECCC---------C-HHHHHHHHHHHHHhCCCCEEEee
Confidence 33555666666667776665555444 577788887888776621 2 23456788899998 99999874
No 405
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=39.90 E-value=1.4e+02 Score=29.93 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=54.3
Q ss_pred HHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010449 224 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 301 (510)
Q Consensus 224 vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL 301 (510)
+|+.|.+...-...+.++=++..++ ++.. .|.++|.- |=+.-+...++. ++.+|+..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e----~~~~~g~D~v~iDl-----EH~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAE----ICAGAGFDWLLIDG-----EHAPNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHH----HHHhcCCCEEEEec-----cCCCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 4555554322233555665555443 3333 69999952 333334455555 77888888888776
Q ss_pred HhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 302 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-|.+++. ++..++..|+|+||+-
T Consensus 68 ----Rv~~~~~~---~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ----RPAIGDPV---LIKQLLDIGAQTLLVP 91 (249)
T ss_pred ----ECCCCCHH---HHHHHhCCCCCEEEec
Confidence 43444443 7888999999999995
No 406
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=39.72 E-value=3.9e+02 Score=26.76 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChHhHHHHHHH-HHcCCceEEeccCC
Q 010449 277 FLAQKMMIYKCNLV-GKPVVTATQMLESMIKSPRPTRAEATDVANA-VLDGTDCVMLSGES 335 (510)
Q Consensus 277 ~~~qk~ii~~~~~~-gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a-v~~G~D~imLs~Et 335 (510)
+..-.+++++.++. ++|+++= -++..+..|..+++.+ ...|+|++.+++=+
T Consensus 147 ~~~~~eiv~~vr~~~~~pv~vK--------l~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 147 PEAVANLLKAVKAAVDIPLLVK--------LSPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred HHHHHHHHHHHHHccCCCEEEE--------eCCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 44556666666665 8898862 2344555677777774 45699999997543
No 407
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=39.28 E-value=74 Score=34.95 Aligned_cols=108 Identities=10% Similarity=0.089 Sum_probs=56.9
Q ss_pred cHHHHHhccCcCCCCEEEEcC------CCCHHHHHHHHHHhccCCCCceEEE--EecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 194 DKEDILRWGVPNNIDMIALSF------VRKGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sf------V~sa~dv~~vr~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
+.+++ +.+++.|++.|.+.. --+.+.-.++..++. ++..+|+ =|.|++-+..+. ..+||++||-.
T Consensus 168 ~~~El-~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip---~~~~~vseSGI~t~~d~~~~~---~~~davLiG~~ 240 (454)
T PRK09427 168 NEEEL-ERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP---ADVIVISESGIYTHAQVRELS---PFANGFLIGSS 240 (454)
T ss_pred CHHHH-HHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC---CCcEEEEeCCCCCHHHHHHHH---hcCCEEEECHH
Confidence 44566 667777888777753 223333444444443 2444444 344444444332 23799999965
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 266 DLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 266 DLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
-+..+=+.+.+. +++. ..=|-|++. ...|+..+...|+|++=+
T Consensus 241 lm~~~d~~~~~~----~L~~---~~vKICGit----------------~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 241 LMAEDDLELAVR----KLIL---GENKVCGLT----------------RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred HcCCCCHHHHHH----HHhc---cccccCCCC----------------CHHHHHHHHhCCCCEEee
Confidence 555443333322 2211 122445542 245667778888887655
No 408
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=39.24 E-value=1.2e+02 Score=30.49 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEeecCC--------CHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCee
Q 010449 36 PMLEKLLRAGMNVARFNFSHG--------THEYQQETLNNLRAAMHNTQILCAVMLDTKGPEI 90 (510)
Q Consensus 36 ~~l~~li~~G~~~~RiN~sh~--------~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~i 90 (510)
+..++|+++|+++.=+|+.-. ..+|+.++...++.+.++.+.| |.+|+.-|++
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p--iSIDT~~~~v 88 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP--ISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe--EEEeCCcHHH
Confidence 445679999999999998665 5677777888888876655544 5678775443
No 409
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.15 E-value=4.8e+02 Score=28.99 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+..+|+..|.|+.+- .|..+.-..+...-..|++.++- + ...-++.+...+++.+ +. ..|
T Consensus 79 ~vA~aa~~~Gi~~~Iv-----------mP~~tp~~Kv~~~r~~GA~Vvl~-g-----~~~d~a~~~a~~la~~-~g-~~~ 139 (499)
T TIGR01124 79 GVAFSAARLGLKALIV-----------MPETTPDIKVDAVRGFGGEVVLH-G-----ANFDDAKAKAIELSQE-KG-LTF 139 (499)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEe-C-----cCHHHHHHHHHHHHHh-cC-CEe
Confidence 4667899999998763 12222223344555679977654 2 3346676666665543 11 122
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hhCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR--AKLIVVLTRGGTTAKLVA----KYRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~--a~aIvv~T~sG~tA~~iS----r~RP~~PIiav 423 (510)
-..|. .| .....-..-+.++.++++ .++||+..-+|.++.-++ ..+|...|+++
T Consensus 140 i~p~~-------~~-~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgV 199 (499)
T TIGR01124 140 IHPFD-------DP-LVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGV 199 (499)
T ss_pred eCCCC-------Ch-HHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111 11 112223345667777764 799999999998866554 46799999999
No 410
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=39.07 E-value=90 Score=31.97 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=45.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCC
Q 010449 22 TKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQI 77 (510)
Q Consensus 22 tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~ 77 (510)
..++.-+ -.+.+.+.+++.+++|.+..-+..||-+.++..+..+.+++.++.+|.
T Consensus 75 vpv~lhl-DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 75 VPVALHL-DHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred CeEEEEC-CCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3455444 344579999999999999999999999999988888888888887764
No 411
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=38.96 E-value=76 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=10.0
Q ss_pred ccccCCCCCEEEEe
Q 010449 131 LPVDVKPGNTILCA 144 (510)
Q Consensus 131 ~~~~v~~gd~i~id 144 (510)
+...+++||+|++=
T Consensus 73 ~~~~Lk~GD~V~ll 86 (100)
T PF10844_consen 73 FTDGLKVGDKVLLL 86 (100)
T ss_pred EecCCcCCCEEEEE
Confidence 44578899988753
No 412
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=38.96 E-value=42 Score=34.90 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCeEE--------ehhhhHhhhc-CCCCChHhHHHHHH-HHHcCCceEEeccCCCCCC--CHHHHHHHHHH
Q 010449 283 MIYKCNLVGKPVVT--------ATQMLESMIK-SPRPTRAEATDVAN-AVLDGTDCVMLSGESAAGA--YPEIAVKIMRR 350 (510)
Q Consensus 283 ii~~~~~~gkpviv--------aTqmLeSM~~-~~~PtraEv~Dv~~-av~~G~D~imLs~Eta~G~--yP~~~V~~m~~ 350 (510)
.+.+|+++|.||+- ..+.++.|.. +..-...=+..+++ |...|+||.++.-||..+. .....+..++.
T Consensus 47 widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~ 126 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKY 126 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHH
T ss_pred hHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHH
Confidence 57899999999852 2355666666 22222222222222 5668999999999999985 66777777777
Q ss_pred HHHHHhc
Q 010449 351 ICIEAES 357 (510)
Q Consensus 351 i~~~aE~ 357 (510)
+-+++.+
T Consensus 127 l~~~~~~ 133 (311)
T PF03644_consen 127 LRKEAHE 133 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 7777776
No 413
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=38.93 E-value=95 Score=30.95 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-++.+++.+.+.+.++.|.+.-+... -+|++++++..|.|+.+-.+ +..+..+-+.|+++++|++.+
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEEe
Confidence 44555566666677776665444332 24678888888988876321 245678889999999999875
No 414
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=38.89 E-value=72 Score=34.06 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHhccCcCCCCEEEEcCCC------CHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----cCeeEEeC
Q 010449 195 KEDILRWGVPNNIDMIALSFVR------KGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVAR 264 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV~------sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~DgI~Igr 264 (510)
.+|. +.+.+.|+|+|.+|--- ....+..+.+.....+.++.||+= -||.+-.+|+++ +|++||||
T Consensus 239 ~eda-~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 239 PEDA-DRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGR 313 (367)
T ss_pred HHHH-HHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcH
Confidence 3455 56789999999888522 122334444433323345667764 355555555554 79999999
Q ss_pred CcccC--CCCc---hh-HHHHHHHHHHHHHHcCCCeE
Q 010449 265 GDLGM--EIPV---EK-IFLAQKMMIYKCNLVGKPVV 295 (510)
Q Consensus 265 gDLg~--e~~~---~~-v~~~qk~ii~~~~~~gkpvi 295 (510)
.=|-. .-|. .. +..++.++-......|..-+
T Consensus 314 ~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i 350 (367)
T TIGR02708 314 PVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTI 350 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 74432 1232 23 33555566666666666544
No 415
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=38.65 E-value=3.3e+02 Score=28.08 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
...++.+..+.+..+.+...+......+.+.+=++. .+-||+. |-++|+++=...-+++++.|+..|.+| +-
T Consensus 64 ~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG 139 (288)
T TIGR00167 64 SAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMID----GSHEPFEENIELTKKVVERAHKMGVSVEAELG 139 (288)
T ss_pred HHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred ehhhhHhhhcCCCCC--hHhHHHHHHHHHc-CCceEEeccCCCCCCC---HH-HHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSPRPT--RAEATDVANAVLD-GTDCVMLSGESAAGAY---PE-IAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~~Pt--raEv~Dv~~av~~-G~D~imLs~Eta~G~y---P~-~~V~~m~~i~~~a 355 (510)
...=-|.-...-.-. .....+...++.. |+|++-.|-=|+.|.| |. --.+.+.+|.+.+
T Consensus 140 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 140 TLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
No 416
>PRK02991 D-serine dehydratase; Provisional
Probab=38.50 E-value=5e+02 Score=28.37 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|..+--..+...-..|++.+... ..-.++++...+++++-...++.
T Consensus 171 alA~aA~~~G~~~tIv-----------vP~~a~~~K~~~ir~~GAeVi~~~------~~~~~a~~~A~~la~~~~~~~~~ 233 (441)
T PRK02991 171 SIGIMSAALGFKVTVH-----------MSADARQWKKDKLRSHGVTVVEYE------GDYGVAVEEGRKAAESDPNCYFI 233 (441)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHhcCCeEeC
Confidence 4566899999999774 466666666677778999887643 33456777777765432111111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC-----C-----cEEEEEcCCchHHHHHHh----h-CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR-----A-----KLIVVLTRGGTTAKLVAK----Y-RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~-----a-----~aIvv~T~sG~tA~~iSr----~-RP~~PIiav 423 (510)
+ ...+....+.-...+.++.++++ . +.||+..-.|.++.-+++ + +|...|+++
T Consensus 234 ----~-----~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigV 301 (441)
T PRK02991 234 ----D-----DENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFA 301 (441)
T ss_pred ----C-----CCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 01111122233334555655553 2 368888888887655544 3 688999999
No 417
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.44 E-value=3.1e+02 Score=28.16 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
+..++.+..+. .+++...+.....++.+..-++. .+-||+. |-.+|+++=...-+++++.|+..|..| +-
T Consensus 63 ~~~~~~~A~~~--~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG 136 (284)
T PRK09195 63 LAIVSAAAKQY--HHPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred ehhhhHhhhcCCCCC--hHhHHHHHHHHHc-CCceEEeccCCCCCCC---HHHHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSPRPT--RAEATDVANAVLD-GTDCVMLSGESAAGAY---PEIAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~~Pt--raEv~Dv~~av~~-G~D~imLs~Eta~G~y---P~~~V~~m~~i~~~a 355 (510)
.-.=-|.-...-.-. .....+...++.. |+|++-.|-=|+.|.| |.--.+.+.+|....
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 418
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=38.40 E-value=4.7e+02 Score=27.10 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=76.5
Q ss_pred CCChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHH---HHHHhccCCCCceEEEEec--CHHHHhchHHHHhh--cCeeE
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVN---VRKVLGPHAKNIQLMSKVE--NQEGVVNFDDILRE--TDSFM 261 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~---vr~~l~~~~~~~~IiakIE--t~~av~nldeI~~~--~DgI~ 261 (510)
.+|+.-.+ .++.+.|+++..-+|+.....+.. -+..+........+++||- +++.+...-.++.. +|+|
T Consensus 19 g~td~~fR---~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I- 94 (321)
T PRK10415 19 GITDRPFR---TLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQII- 94 (321)
T ss_pred CCCcHHHH---HHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE-
Confidence 44544433 346788999988899887543321 1112222223345678885 33443333333322 3444
Q ss_pred EeCCcccCCCCchhH------------HHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCc
Q 010449 262 VARGDLGMEIPVEKI------------FLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTD 327 (510)
Q Consensus 262 IgrgDLg~e~~~~~v------------~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D 327 (510)
||.+.+|..++ |..-++|+++.++ .++|+.+=.. ..-.++..+..+++. +...|+|
T Consensus 95 ----dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d 164 (321)
T PRK10415 95 ----DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQ 164 (321)
T ss_pred ----EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCC
Confidence 45555664322 4555677776655 4789876432 112233344556665 4567999
Q ss_pred eEEeccCCCCCCC
Q 010449 328 CVMLSGESAAGAY 340 (510)
Q Consensus 328 ~imLs~Eta~G~y 340 (510)
++.+.+-|..+.|
T Consensus 165 ~i~vh~rt~~~~~ 177 (321)
T PRK10415 165 ALTIHGRTRACLF 177 (321)
T ss_pred EEEEecCcccccc
Confidence 9999988865554
No 419
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=38.35 E-value=97 Score=30.14 Aligned_cols=60 Identities=12% Similarity=0.229 Sum_probs=38.5
Q ss_pred EEecCCCEEEEEec----CCCCCCccEEecCCCCcc--ccCCCCCEEEEe--CCeEEEEEEEEeCCCCeE
Q 010449 101 IQLKEGQEITVSTD----YDFKGNEEMITMSYKKLP--VDVKPGNTILCA--DGTITLTVLSCDPKSGTV 162 (510)
Q Consensus 101 i~l~~G~~v~l~~~----~~~~~~~~~i~v~~~~~~--~~v~~gd~i~id--DG~i~l~V~~~~~~~~~i 162 (510)
.-.+.|+++.++.. |..-.......++-..|. ..+++|+.++.+ +|.+.++|++++ ++.|
T Consensus 50 ~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~--~d~V 117 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVE--DDHV 117 (196)
T ss_pred cCCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEc--CCEE
Confidence 34678999888865 221122223445544442 358999999874 788899999995 4444
No 420
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=38.31 E-value=2.2e+02 Score=30.20 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=67.2
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchH
Q 010449 283 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362 (510)
Q Consensus 283 ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 362 (510)
+...|+.+|.++.+. .|..+....+...-..|++.+.... ..|.. .+++...+++++ +...++-
T Consensus 126 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~lr~~GA~Vi~~~~--~~~~~--~~~~~a~~l~~~-~~~~~~~ 189 (368)
T PLN02556 126 LAFMAAMKGYKMILT-----------MPSYTSLERRVTMRAFGAELVLTDP--TKGMG--GTVKKAYELLES-TPDAFML 189 (368)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC--CCCcc--HHHHHHHHHHHh-cCCCCcc
Confidence 445789999999874 3555555556667778999887642 22322 234443343332 1111111
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKA--RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~--~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
..| ..+....--....+.++.+++ ..++||+..-+|.|+.-+++ +.|.+.|+++
T Consensus 190 ~q~-------~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigV 249 (368)
T PLN02556 190 QQF-------SNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGV 249 (368)
T ss_pred CCC-------CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEE
Confidence 001 011111001223455666665 47999999999998755554 5699999999
No 421
>PRK10812 putative DNAse; Provisional
Probab=38.31 E-value=1.5e+02 Score=29.98 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=60.9
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------CCCceEEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.|...+.+.+.+.|+..++.+-+ +.++...+.++.+.. |-|+.-+ .....++.+.++++.. =++|=|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~---~~~~~~~~l~~~~~~~--~vvaIG 93 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERDNVVFSCGVHPLNQ---DEPYDVEELRRLAAEE--GVVAMG 93 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCCCeEEEEEeCCCCC---CChhHHHHHHHHhcCC--CEEEEE
Confidence 35555557888999998776654 677777777766532 2233211 1234455666665433 344557
Q ss_pred cccCCCCch-hHHHHH----HHHHHHHHHcCCCeEEeh
Q 010449 266 DLGMEIPVE-KIFLAQ----KMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 266 DLg~e~~~~-~v~~~q----k~ii~~~~~~gkpvivaT 298 (510)
..|.+.... .-...| ++.++.|++.|+|+++-+
T Consensus 94 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 94 ETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred eeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 888876431 123445 456777899999999854
No 422
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.15 E-value=2.8e+02 Score=27.42 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHH--hcc---cchH
Q 010449 288 NLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEA--ESS---LDYR 362 (510)
Q Consensus 288 ~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a--E~~---~~~~ 362 (510)
++.+.|+++.. ..-+.. |+..++..|+|+++++.+.- +.|- .+.++.+.. |+. ++.+
T Consensus 71 ~~~~ipv~~~G---------Gi~s~~---~~~~~l~~Ga~~Viigt~~l--~~p~----~~~ei~~~~g~~~iv~slD~~ 132 (253)
T PRK02083 71 EQVFIPLTVGG---------GIRSVE---DARRLLRAGADKVSINSAAV--ANPE----LISEAADRFGSQCIVVAIDAK 132 (253)
T ss_pred HhCCCCEEeeC---------CCCCHH---HHHHHHHcCCCEEEEChhHh--hCcH----HHHHHHHHcCCCCEEEEEEec
Confidence 34478988743 344554 44555557999999985432 3453 444444443 221 1211
Q ss_pred H-HH-HHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEc--CCch-------HHHHHHhhCCCCcEEEE
Q 010449 363 A-VF-KEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLT--RGGT-------TAKLVAKYRPAVPILSV 423 (510)
Q Consensus 363 ~-~~-~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T--~sG~-------tA~~iSr~RP~~PIiav 423 (510)
. .. .........+....+.-....++.+.+.+++.|++.+ +.|. ....+.+ ..+.||++-
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipvia~ 203 (253)
T PRK02083 133 RDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPVIAS 203 (253)
T ss_pred cCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCEEEE
Confidence 0 00 0000000001111111112334556678999888844 5452 2333433 357999998
No 423
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=37.93 E-value=5.2e+02 Score=30.08 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=42.1
Q ss_pred hcHHHHHhccCcCCCCEEEEc------CCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----cCeeEE
Q 010449 193 KDKEDILRWGVPNNIDMIALS------FVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMV 262 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~s------fV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~DgI~I 262 (510)
+|.+++ +.+++.|++.|.+. |--+.+.-.++..++. ++..+|+ | .|+.+.+++... +||++|
T Consensus 168 h~~~el-~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip---~~~~~Vs--E--SGI~~~~d~~~l~~~G~davLI 239 (695)
T PRK13802 168 HTREEI-ERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP---DDVIKVA--E--SGVFGAVEVEDYARAGADAVLV 239 (695)
T ss_pred CCHHHH-HHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC---CCcEEEE--c--CCCCCHHHHHHHHHCCCCEEEE
Confidence 355677 77888899988775 3334444555555553 2333332 2 477666666543 699999
Q ss_pred eCCcccCC
Q 010449 263 ARGDLGME 270 (510)
Q Consensus 263 grgDLg~e 270 (510)
|-.-+..+
T Consensus 240 Geslm~~~ 247 (695)
T PRK13802 240 GEGVATAD 247 (695)
T ss_pred CHHhhCCC
Confidence 96555443
No 424
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=37.84 E-value=4.5e+02 Score=26.64 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=88.2
Q ss_pred HHhchHHHHhh-cCeeEEeC-Cccc--CCCCchhHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHH
Q 010449 246 GVVNFDDILRE-TDSFMVAR-GDLG--MEIPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVAN 320 (510)
Q Consensus 246 av~nldeI~~~-~DgI~Igr-gDLg--~e~~~~~v~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~ 320 (510)
|+++++.+.+. .|||||-= +|.- ...++ +...++..++...++ .+.|+++ |+|- +.+ -+. ++=
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~-etvaaM~~i~~~v~~~~~~p~GV--nvL~---nd~----~aa--lai 98 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGP-ETVAAMARIAREVRREVSVPVGV--NVLR---NDP----KAA--LAI 98 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCH-HHHHHHHHHHHHHHHhCCCCEEe--eeec---CCC----HHH--HHH
Confidence 44555555554 69999973 5542 22333 444555666655544 5899987 4441 111 122 233
Q ss_pred HHHcCCceEEe--------ccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh
Q 010449 321 AVLDGTDCVML--------SGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANK 392 (510)
Q Consensus 321 av~~G~D~imL--------s~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~ 392 (510)
|...|+|.+=. +.|=.+---..+.+++-++| .++-.+...-.++ ...+... ..+...+..++..
T Consensus 99 A~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l--~a~v~ilaDV~~k-----h~~~l~~-~~~~~~~~~a~~~ 170 (254)
T PF03437_consen 99 AAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRL--GADVKILADVHVK-----HSSPLAT-RDLEEAAKDAVER 170 (254)
T ss_pred HHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHc--CCCeEEEeeechh-----hcccCCC-CCHHHHHHHHHHh
Confidence 44467776542 22211111233444443333 1221111111111 1111111 1233444455677
Q ss_pred cCCcEEEEEc-CCch--HHHHHHhh---CCCCcEEEEEecccccCCCCCCCCChhhhhhhccccCcEE
Q 010449 393 ARAKLIVVLT-RGGT--TAKLVAKY---RPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIP 454 (510)
Q Consensus 393 ~~a~aIvv~T-~sG~--tA~~iSr~---RP~~PIiav~~~~~~tt~~~~~~~~~~~aR~L~L~~GV~P 454 (510)
..|+++++-- .+|. +...+.+. -| .|||+- + ++.-+.+..+|...-|++-
T Consensus 171 ~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlvG-------S----Gvt~~Ni~~~l~~ADG~IV 226 (254)
T PF03437_consen 171 GGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLVG-------S----GVTPENIAEYLSYADGAIV 226 (254)
T ss_pred cCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEEe-------c----CCCHHHHHHHHHhCCEEEE
Confidence 8999877722 2333 33444444 45 789988 2 2467888888998899763
No 425
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=37.83 E-value=2.5e+02 Score=27.83 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHhccCCCCceEEEEecC---HHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcC
Q 010449 216 RKGSDLVNVRKVLGPHAKNIQLMSKVEN---QEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVG 291 (510)
Q Consensus 216 ~sa~dv~~vr~~l~~~~~~~~IiakIEt---~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~g 291 (510)
++++.+.++-+.+++. ++.+..||=. .+.++-...+.+. +|+|-+.-+.-+... ++ ..++..+ .+
T Consensus 123 ~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~a---d~-----~~I~~i~-~~ 191 (233)
T cd02911 123 KDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHA---DL-----KKIRDIS-TE 191 (233)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCC---cH-----HHHHHhc-CC
Confidence 4566666665555543 6788888832 1122212222222 577655322222111 21 2233333 57
Q ss_pred CCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 292 KPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 292 kpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.|+|.. +..-|. .|+..++..|+|++|+.
T Consensus 192 ipVIgn---------GgI~s~---eda~~~l~~GaD~VmiG 220 (233)
T cd02911 192 LFIIGN---------NSVTTI---ESAKEMFSYGADMVSVA 220 (233)
T ss_pred CEEEEE---------CCcCCH---HHHHHHHHcCCCEEEEc
Confidence 898763 334444 45566777899999997
No 426
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.75 E-value=3.1e+02 Score=30.08 Aligned_cols=138 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeC-------Cc
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVAR-------GD 266 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~Igr-------gD 266 (510)
|..++ |++.|+|+|-++ +.--....+|+.+ ....+.-+-+..--+-....-.-+|.|.+|+ -+
T Consensus 268 D~~dl---Al~~gAdGVHLG--QeDL~~~~aR~il-----g~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~ 337 (437)
T PRK12290 268 DYWQL---AIKHQAYGVHLG--QEDLEEANLAQLT-----DAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQM 337 (437)
T ss_pred CHHHH---HHHcCCCEEEcC--hHHcchhhhhhhc-----CCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCC
Q ss_pred ccCCCCchhHHHHHHHH--HHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHH
Q 010449 267 LGMEIPVEKIFLAQKMM--IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIA 344 (510)
Q Consensus 267 Lg~e~~~~~v~~~qk~i--i~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~ 344 (510)
-...+|++.+..+++.+ +..++..++|++.-.-+= ..++......|+|++-..+.-..-..|.++
T Consensus 338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-------------~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa 404 (437)
T PRK12290 338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-------------QSNAEQVWQCGVSSLAVVRAITLAEDPQLV 404 (437)
T ss_pred CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-------------HHHHHHHHHcCCCEEEEehHhhcCCCHHHH
Q ss_pred HHHHHHHHHH
Q 010449 345 VKIMRRICIE 354 (510)
Q Consensus 345 V~~m~~i~~~ 354 (510)
++.+.++...
T Consensus 405 ~~~l~~~~~~ 414 (437)
T PRK12290 405 IEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHhh
No 427
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=37.74 E-value=48 Score=36.55 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=41.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 21 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 21 ~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
+..+=+-+|.+.+..+.++.|+++|+++.=++.+||-.+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44455556777778899999999999999999999999887788888876
No 428
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.67 E-value=3.7e+02 Score=26.09 Aligned_cols=108 Identities=8% Similarity=0.061 Sum_probs=57.8
Q ss_pred HHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhH
Q 010449 197 DILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKI 276 (510)
Q Consensus 197 di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v 276 (510)
++ +.+++.|+||+..|.. +. ++.+.+.. .+..++.-+.|++-+....+ .-+|.+-+=+.+ .+|++.+
T Consensus 75 ~~-~~a~~aGA~fivsp~~-~~-~v~~~~~~-----~~~~~~~G~~t~~E~~~A~~--~Gad~vk~Fpa~---~~G~~~l 141 (206)
T PRK09140 75 QV-DRLADAGGRLIVTPNT-DP-EVIRRAVA-----LGMVVMPGVATPTEAFAALR--AGAQALKLFPAS---QLGPAGI 141 (206)
T ss_pred HH-HHHHHcCCCEEECCCC-CH-HHHHHHHH-----CCCcEEcccCCHHHHHHHHH--cCCCEEEECCCC---CCCHHHH
Confidence 45 5578899999998853 33 33333332 23455555555543322221 126888764432 2454443
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCC
Q 010449 277 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGES 335 (510)
Q Consensus 277 ~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Et 335 (510)
..+.+.+ . ...|++-..- + ...++......|+|++.+++.-
T Consensus 142 ~~l~~~~----~-~~ipvvaiGG-I------------~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 142 KALRAVL----P-PDVPVFAVGG-V------------TPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred HHHHhhc----C-CCCeEEEECC-C------------CHHHHHHHHHCCCeEEEEehHh
Confidence 3332211 0 2477654222 1 1356678888999999986543
No 429
>PRK08246 threonine dehydratase; Provisional
Probab=37.67 E-value=4.7e+02 Score=26.84 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+. .|....-..+...-..|++.+...+ . ..++++...++.++- .. +|
T Consensus 82 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~~-g~-~~ 142 (310)
T PRK08246 82 AVAYAAAALGVPATVF-----------VPETAPPAKVARLRALGAEVVVVGA-----E-YADALEAAQAFAAET-GA-LL 142 (310)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHCCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CC-Ee
Confidence 4556899999999764 2333333334556678999776643 2 234555555544331 11 11
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh-hCCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK-YRPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr-~RP~~PIiav 423 (510)
...|. .|. ..+.-...+.++.+++ ..+.||+.+-+|.++.-+++ +++...|+++
T Consensus 143 ~~~~~-------n~~-~i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~~~vi~v 198 (310)
T PRK08246 143 CHAYD-------QPE-VLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGRARVVAV 198 (310)
T ss_pred CCCCC-------Chh-hhcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCCCEEEEE
Confidence 11111 111 1112233455666665 57999999999998777766 4567788888
No 430
>PRK15456 universal stress protein UspG; Provisional
Probab=37.66 E-value=69 Score=28.27 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhhCCCCcEEEE
Q 010449 382 LASSAVRTANKARAKLIVVLTRG--------GTTAKLVAKYRPAVPILSV 423 (510)
Q Consensus 382 ia~~av~~A~~~~a~aIvv~T~s--------G~tA~~iSr~RP~~PIiav 423 (510)
.+...++.|.+.+++.||+-|+. |+++..+.+. -+|||+.+
T Consensus 93 ~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~-a~~pVLvV 141 (142)
T PRK15456 93 VRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRH-ANLPVLVV 141 (142)
T ss_pred hHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHc-CCCCEEEe
Confidence 33445677899999999998863 5566677665 56999887
No 431
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=37.31 E-value=2.7e+02 Score=26.93 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcCCch--HHHHHHh-----h---CCCCcEEEEEecccccCCCCCCC-------CChh
Q 010449 380 ESLASSAVRTANK-ARAKLIVVLTRGGT--TAKLVAK-----Y---RPAVPILSVVVPVLTTDSFDWTC-------SDET 441 (510)
Q Consensus 380 ~~ia~~av~~A~~-~~a~aIvv~T~sG~--tA~~iSr-----~---RP~~PIiav~~~~~~tt~~~~~~-------~~~~ 441 (510)
+.+..++-.++.. .++.-|+++-..|. .|+-++. | ||..|.++++ +...|.+ ++..
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~------~d~~~~ta~and~~~~~~ 98 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN------TDNVVLTAIANDRLHDEV 98 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEec------CcHHHHHHHhccccHHHH
Confidence 4555555556555 36777888876555 4666663 2 9999999981 1000000 1223
Q ss_pred hhhhhc--cccCcEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 010449 442 PARHSL--IYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI 498 (510)
Q Consensus 442 ~aR~L~--L~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~VVvv~g~ 498 (510)
.+||+. +..|=.-+.+..+. +.+ .+..+++.++++| -++|.++|.
T Consensus 99 f~~ql~~~~~~gDvli~iS~SG------~s~-~v~~a~~~Ak~~G-----~~vI~IT~~ 145 (196)
T PRK10886 99 YAKQVRALGHAGDVLLAISTRG------NSR-DIVKAVEAAVTRD-----MTIVALTGY 145 (196)
T ss_pred HHHHHHHcCCCCCEEEEEeCCC------CCH-HHHHHHHHHHHCC-----CEEEEEeCC
Confidence 345553 33343334443331 222 2556777788654 567777765
No 432
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=37.21 E-value=1.1e+02 Score=27.56 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=45.9
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecC--CCHHHHHHHHHHHHHHHHhcCCcEEE
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSH--GTHEYQQETLNNLRAAMHNTQILCAV 81 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh--~~~~~~~~~i~~ir~~~~~~~~~v~i 81 (510)
...+-++|.++ +-.+.+.+.+++-+| |+.=...+- .+.+.+.++++.+|+.+++.|.-++-
T Consensus 39 ~~~~Ikvaei~-~~~Dl~~~~~eiy~G-NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 39 AKVYIKVAEIS-SYEDLEEAKREIYAG-NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred CeEEEEEEEeC-CHHHHHHHHHHHhcC-CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 34566678875 334677778889999 888877764 26888999999999999988754443
No 433
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=36.98 E-value=1.1e+02 Score=33.83 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=93.1
Q ss_pred eEEEEEeeCeEecCCCCcccCCccccCCCCChhcHHHHHhccCcCCCCEEEE---cCCCCHHHHHHHHHHhccCCCCceE
Q 010449 161 TVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIAL---SFVRKGSDLVNVRKVLGPHAKNIQL 237 (510)
Q Consensus 161 ~i~~~v~~~G~l~s~K~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~---sfV~sa~dv~~vr~~l~~~~~~~~I 237 (510)
.++-++-.|- ++..|=.+|+.++ ++. ...+ +...-|+|.|.= ..+-|.||+.++..-|++.++.-.|
T Consensus 237 ~ieIKiaQGA--KPGeGG~Lpg~KV-----~~~-IA~~--R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 237 AIEIKIAQGA--KPGEGGQLPGEKV-----TPE-IAKT--RGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKI 306 (485)
T ss_pred eEEEEeccCC--CCCCCCCCCCccC-----CHH-HHHh--cCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeE
Confidence 3444444333 3445556777765 322 2223 446667776652 2467889999998889888766669
Q ss_pred EEEecCHHHHhchHH-HHhh-cCeeEEeCCcccCCCC-----------ch-hHHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 010449 238 MSKVENQEGVVNFDD-ILRE-TDSFMVARGDLGMEIP-----------VE-KIFLAQKMMIYKCNLVGKPVVTATQMLES 303 (510)
Q Consensus 238 iakIEt~~av~nlde-I~~~-~DgI~IgrgDLg~e~~-----------~~-~v~~~qk~ii~~~~~~gkpvivaTqmLeS 303 (510)
..|+=...+++-+.. .+++ +|.|.|.-.|=|.-.. ++ -++++++.+...-.+ .++.+.+.--|
T Consensus 307 ~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl-- 383 (485)
T COG0069 307 SVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGL-- 383 (485)
T ss_pred EEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCc--
Confidence 999977777776666 4444 7999998655443322 11 455566555544433 56655544333
Q ss_pred hhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 304 MIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 304 M~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
-| -.||+-|+..|||.+-.
T Consensus 384 ------~T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 384 ------RT---GADVAKAAALGADAVGF 402 (485)
T ss_pred ------cC---HHHHHHHHHhCcchhhh
Confidence 12 46999999999998654
No 434
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=36.95 E-value=2.1e+02 Score=23.36 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=37.9
Q ss_pred cEEecCCCEEEEEecCCCCCCccEEecCCCCccccCCCCCEEEEeCCeEEE-EEEE---EeCCCCeEEEEEeeC--eEec
Q 010449 100 PIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITL-TVLS---CDPKSGTVRCRCENT--AMLG 173 (510)
Q Consensus 100 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~gd~i~idDG~i~l-~V~~---~~~~~~~i~~~v~~~--G~l~ 173 (510)
...+.+|+.++|.-...........+.-....+..-.......+.+|.+.+ .+.. ...+.+...|.+.|+ |.+.
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 456778898888865221112233333211112211112244456665443 2321 112456799999998 7775
Q ss_pred CC
Q 010449 174 ER 175 (510)
Q Consensus 174 s~ 175 (510)
++
T Consensus 88 s~ 89 (95)
T cd05722 88 SR 89 (95)
T ss_pred Ee
Confidence 54
No 435
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=36.88 E-value=4.7e+02 Score=27.84 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+.+|.|+.+. .|..+--..+.+.-..|++.+... |. ..++++.+.+++++-..++.+
T Consensus 108 a~A~~Aa~~G~~~~I~-----------vP~~~~~~k~~~i~~~GAeVi~v~-----~~-~~~a~~~a~~~~~~~g~~~~~ 170 (376)
T TIGR01747 108 GVAWAAQQLGQKAVVY-----------MPKGSAQERVENILNLGAECTITD-----MN-YDDTVRLAMQMAQQHGWVVVQ 170 (376)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-----CC-HHHHHHHHHHHHHhcCcEEec
Confidence 4567899999999774 344444456677778899877664 23 446777777765442111110
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHHh-h----CCCCc-EEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKAR------AKLIVVLTRGGTTAKLVAK-Y----RPAVP-ILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~------a~aIvv~T~sG~tA~~iSr-~----RP~~P-Iiav 423 (510)
...++.. . ..+....+--...+.++.++++ .+.||+.+-+|.++..+++ + +|..| |+++
T Consensus 171 ~~~~~~~-~--~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~V 241 (376)
T TIGR01747 171 DTAWEGY-E--KIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVV 241 (376)
T ss_pred ccccccc-c--cCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0000000 0 0011112223345566666653 5889999999988776655 2 45554 6666
No 436
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.87 E-value=3.6e+02 Score=29.58 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=103.5
Q ss_pred CCChhcHHHHHhccCcCCCCEEEE----------cCCCCHHHHHHHHHHhccCCCCceE--EEEecCHHHHhc-------
Q 010449 189 TLTEKDKEDILRWGVPNNIDMIAL----------SFVRKGSDLVNVRKVLGPHAKNIQL--MSKVENQEGVVN------- 249 (510)
Q Consensus 189 ~lt~~D~~di~~~a~~~g~d~I~~----------sfV~sa~dv~~vr~~l~~~~~~~~I--iakIEt~~av~n------- 249 (510)
.++..|+..|.....+.|++.|=+ +|+.- ++-+.++.+-+ ...++.+ ++.--+.-|..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e-~p~e~l~~l~~-~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNE-DPWERLRKIRK-AVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCC-CHHHHHHHHHH-hCCCCEEEEEeccccccccccCchhhHH
Confidence 467778777756666678887755 55532 23333433322 2133333 354445555543
Q ss_pred --hHHHHhh-cCe--eEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHH
Q 010449 250 --FDDILRE-TDS--FMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVL 323 (510)
Q Consensus 250 --ldeI~~~-~Dg--I~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~ 323 (510)
++.-++. .|. |+.+-.|+ .. .+..++.++++|+.+-++- +....|+-+.+-+.+++. ++.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~---------~n-~~~~v~~ak~~G~~v~~~i----~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDV---------RN-LETAVKATKKAGGHAQVAI----SYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcH---------HH-HHHHHHHHHHcCCeEEEEE----EeecCCCCCHHHHHHHHHHHHH
Confidence 1222222 353 33333333 22 4557899999998753321 223346656666777665 677
Q ss_pred cCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCcEEEEEc
Q 010449 324 DGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLT 402 (510)
Q Consensus 324 ~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~~a~aIvv~T 402 (510)
.|+|.|.+. +|+=-..|.++-+.++.+..+..--+.. |.+ ....+|.+...+|-+.||+ +|=.|
T Consensus 166 ~Gad~I~i~-Dt~G~l~P~~v~~lv~alk~~~~~pi~~--H~H-----------nt~GlA~AN~laAieaGad-~vD~s 229 (448)
T PRK12331 166 MGADSICIK-DMAGILTPYVAYELVKRIKEAVTVPLEV--HTH-----------ATSGIAEMTYLKAIEAGAD-IIDTA 229 (448)
T ss_pred cCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcCCeEEE--Eec-----------CCCCcHHHHHHHHHHcCCC-EEEee
Confidence 899999997 8887788999988888876544211110 111 0123555566677778888 34434
No 437
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.81 E-value=56 Score=33.55 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=46.7
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEeC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Igr 264 (510)
+.+++ .-+++.|+|.|.+=.. ++++++++..+++.. .+||---|+ +|+.++++. .|.|.+|.
T Consensus 202 slee~-~ea~~~gaDiImLDn~-s~e~l~~av~~~~~~-------~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 202 RLDQI-EPVLAAGVDTIMLDNF-SLDDLREGVELVDGR-------AIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CHHHH-HHHHhcCCCEEEECCC-CHHHHHHHHHHhCCC-------eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 33455 4567899999999887 788999888877532 257766665 688888877 79999874
No 438
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.73 E-value=54 Score=36.43 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=42.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHH
Q 010449 19 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRA 70 (510)
Q Consensus 19 ~~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~ 70 (510)
..|-.+.+.+|+. ...+..+.|+++|+|++=+.-+||..+...+.|+.+|+
T Consensus 229 ~grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 229 SKRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred ccCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 3566778888885 46799999999999999999999988887777777776
No 439
>PRK06110 hypothetical protein; Provisional
Probab=36.53 E-value=4.9e+02 Score=26.76 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccchH
Q 010449 283 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362 (510)
Q Consensus 283 ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~~ 362 (510)
+...|+..|.|+.+. | |..+.. ......-..|++.+.. |....++++...+..++ +..++..
T Consensus 85 lA~~a~~~G~~~~iv------v---p~~~~~--~k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~~~~~ 146 (322)
T PRK06110 85 VAFAARRHGLAATIV------V---PHGNSV--EKNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGLHMVP 146 (322)
T ss_pred HHHHHHHcCCCEEEE------E---cCCCCH--HHHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCCEEcC
Confidence 445799999999774 1 122222 2234556689997754 23345666655554433 2221111
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----hCCCCcEEEE
Q 010449 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAK----YRPAVPILSV 423 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr----~RP~~PIiav 423 (510)
.| .+ ...+.-...+.++..++ +.+.||+..-+|.+..-+++ ++|...|+++
T Consensus 147 -~~--------~~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~V 202 (322)
T PRK06110 147 -SF--------HP-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGV 202 (322)
T ss_pred -CC--------CC-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 01 11 11122233456666666 45899999999998776654 6799999999
No 440
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.19 E-value=76 Score=32.11 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeEe
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRT 92 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp~iR~ 92 (510)
.+..++|+++|+++.=+|+.-...+++.++...++...+..+.| |.+|+.-|++.-
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~p--lsIDT~~~~v~e 83 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVP--LCIDSPNPAAIE 83 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCC--EEEeCCCHHHHH
Confidence 34566789999999999998766777888888888877666655 677988666554
No 441
>PRK10425 DNase TatD; Provisional
Probab=35.91 E-value=2e+02 Score=28.87 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=61.1
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------CCCceEEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.|...+.+.+.+.|+..++.+-+ +.++..++.++.... |-|+.-+.. -+.+.++.++++++... ++|=|
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~~~~~~~~--~vaIG 90 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHDSSQ-WQAATEEAIIELAAQPE--VVAIG 90 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCcccc-CCHHHHHHHHHhccCCC--EEEEe
Confidence 35555557788889887777655 477777777765432 223332221 12444555666654333 34557
Q ss_pred cccCCCCch-hHHHHH----HHHHHHHHHcCCCeEEeh
Q 010449 266 DLGMEIPVE-KIFLAQ----KMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 266 DLg~e~~~~-~v~~~q----k~ii~~~~~~gkpvivaT 298 (510)
..|.+.... .-...| ++.++.|.++++|+++-+
T Consensus 91 EiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 91 ECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 788776531 123344 567888999999999854
No 442
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=35.88 E-value=97 Score=24.60 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=42.8
Q ss_pred CcEEecCCCEEEEEecCCCCCCccEEe-cCCCCccccCCCCCEEEEeCCeEEEEEEEEeC-CCCeEEEEEeeCe
Q 010449 99 KPIQLKEGQEITVSTDYDFKGNEEMIT-MSYKKLPVDVKPGNTILCADGTITLTVLSCDP-KSGTVRCRCENTA 170 (510)
Q Consensus 99 ~~i~l~~G~~v~l~~~~~~~~~~~~i~-v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~-~~~~i~~~v~~~G 170 (510)
..+.++.|+.+.|..........+.-+ .+...+.. ...-.+..+++.-.|.+..+.. +.+...|.+.+.+
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 458999999999987632112223323 34222222 3334556667888888877654 3456889998773
No 443
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=35.79 E-value=82 Score=31.23 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=38.1
Q ss_pred HHHHhccCcCCCCEEEEcCCCC--HHHHHHHHHHhccCCCCceEEE--EecCHHHHhchHHHHhh-cCeeEEeCC
Q 010449 196 EDILRWGVPNNIDMIALSFVRK--GSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVARG 265 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~s--a~dv~~vr~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~DgI~Igrg 265 (510)
..+.+.+.+.|+|+|.++--.. ..+...+++.- .++.||+ -|.|.+-. .+.+.. +|++|||||
T Consensus 155 ~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda---~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESA---KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHH---HHHHHcCCCEEEEcCC
Confidence 3343566789999987754332 33555555542 2466665 35555443 333333 899999999
No 444
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=35.79 E-value=70 Score=31.56 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHH
Q 010449 315 ATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICI 353 (510)
Q Consensus 315 v~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~ 353 (510)
+.....|+..|+|.++..---.-...|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 345778999999999998887788889999988877554
No 445
>PLN02417 dihydrodipicolinate synthase
Probab=35.65 E-value=3.8e+02 Score=27.09 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=52.6
Q ss_pred cCeeEEe-CCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCCceEEeccC
Q 010449 257 TDSFMVA-RGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGTDCVMLSGE 334 (510)
Q Consensus 257 ~DgI~Ig-rgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~D~imLs~E 334 (510)
.|||+++ -.-=+..+..++-..+-+..++.+ ....|+++-+ ..++-.|+.+.+. |-..|+|++|+..=
T Consensus 36 v~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~gv---------~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 36 AEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGNT---------GSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred CCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEEC---------CCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 7999985 211223344444333333333332 2235776532 2344455555544 78899999999765
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 335 SAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 335 ta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
.....-+.+.++....++... ..+-|
T Consensus 106 ~y~~~~~~~i~~~f~~va~~~-pi~lY 131 (280)
T PLN02417 106 YYGKTSQEGLIKHFETVLDMG-PTIIY 131 (280)
T ss_pred ccCCCCHHHHHHHHHHHHhhC-CEEEE
Confidence 433223577888888888765 44333
No 446
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.63 E-value=1.8e+02 Score=28.49 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCCCChHhHHHHHHHHHcCCceEEeccCCC--CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCCCCchHHHHH
Q 010449 307 SPRPTRAEATDVANAVLDGTDCVMLSGESA--AGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLAS 384 (510)
Q Consensus 307 ~~~PtraEv~Dv~~av~~G~D~imLs~Eta--~G~yP~~~V~~m~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 384 (510)
...||...+.++..|+.+|+|.+-+----. .+..-....+.|..|+..+... .-+-.++ .. ..+. +.+.
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~-~lKvIlE-----~~-~L~~-~ei~- 135 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGV-LLKVIIE-----TG-LLTD-EEIR- 135 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCC-eEEEEEe-----cC-CCCH-HHHH-
Confidence 346888888999999999999987643322 1123355666677776655421 0000000 11 1122 4454
Q ss_pred HHHHHHHhcCCcEEEEEcCCchH--------HHHHHhh-CCCCcEEEE
Q 010449 385 SAVRTANKARAKLIVVLTRGGTT--------AKLVAKY-RPAVPILSV 423 (510)
Q Consensus 385 ~av~~A~~~~a~aIvv~T~sG~t--------A~~iSr~-RP~~PIiav 423 (510)
.|++++...+|+ ++=|.||.. .+.+.+. +.++||.+-
T Consensus 136 ~a~~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 136 KACEICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 889999999999 566666653 3445444 346777776
No 447
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.59 E-value=3.1e+02 Score=27.16 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=65.5
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeE-Ee-CCcccCCCCchhH
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFM-VA-RGDLGMEIPVEKI 276 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~-Ig-rgDLg~e~~~~~v 276 (510)
+.+.+.|+|++.+|-. ..|+...+.+.+++.|-+.-++..=.| -.+.++.|++. .|.+. ++ .|=.|.+.+..
T Consensus 98 ~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~-- 172 (242)
T cd04724 98 RDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTELP-- 172 (242)
T ss_pred HHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC--
Confidence 5567889999999644 347888888888887755444444444 35567888884 45433 34 33344443321
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 277 FLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 277 ~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
+...+.+-...+...+|+.+-.. .=+.+ ++...... +|++...
T Consensus 173 ~~~~~~i~~lr~~~~~pI~vggG---------I~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 173 DDLKELIKRIRKYTDLPIAVGFG---------ISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred hhHHHHHHHHHhcCCCcEEEEcc---------CCCHH---HHHHHHcc-CCEEEEC
Confidence 22223332223334788877433 22333 33444445 8888875
No 448
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=35.52 E-value=2.9e+02 Score=28.72 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCChhcHHHHH-------hccCcCCCCEEEEcC-------------CCCH----------------HHHHHHHHHhccCC
Q 010449 189 TLTEKDKEDIL-------RWGVPNNIDMIALSF-------------VRKG----------------SDLVNVRKVLGPHA 232 (510)
Q Consensus 189 ~lt~~D~~di~-------~~a~~~g~d~I~~sf-------------V~sa----------------~dv~~vr~~l~~~~ 232 (510)
.+|+.|++.+. +.+.+.|+|+|=+.. .+.. +-++.+|+.+ |
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C
Confidence 46777766553 467789999996642 2232 3444445444 5
Q ss_pred CCceEEEEecC----------HHHHhchHHHHhh-cCeeEEeCCcccCCC--CchhHHHHHHHHHHHHHHcCCCeEEehh
Q 010449 233 KNIQLMSKVEN----------QEGVVNFDDILRE-TDSFMVARGDLGMEI--PVEKIFLAQKMMIYKCNLVGKPVVTATQ 299 (510)
Q Consensus 233 ~~~~IiakIEt----------~~av~nldeI~~~-~DgI~IgrgDLg~e~--~~~~v~~~qk~ii~~~~~~gkpvivaTq 299 (510)
.+..|..||=- .++++-+..+.+. .|.|=+..|...... +..... .....-...+....|++..-.
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~G~ 298 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAVGL 298 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEeCC
Confidence 56778888641 1222222222222 467776655433221 111100 011111223345889886433
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHHcC-CceEEec
Q 010449 300 MLESMIKSPRPTRAEATDVANAVLDG-TDCVMLS 332 (510)
Q Consensus 300 mLeSM~~~~~PtraEv~Dv~~av~~G-~D~imLs 332 (510)
.-|.+ +...++..| +|+|++.
T Consensus 299 ---------i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 299 ---------ITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred ---------CCCHH---HHHHHHHcCCCCeehhh
Confidence 22333 345567777 9999885
No 449
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=35.51 E-value=4e+02 Score=25.74 Aligned_cols=46 Identities=7% Similarity=0.180 Sum_probs=33.5
Q ss_pred cCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH
Q 010449 202 GVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV 247 (510)
Q Consensus 202 a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av 247 (510)
..+.|+|++.+.-.-..+-++.+.+...+.|..+.+++..=++.+.
T Consensus 72 ~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~ 117 (213)
T TIGR01740 72 KIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSL 117 (213)
T ss_pred HHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChh
Confidence 4578999999998777777888888877666555666666555443
No 450
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.50 E-value=1.3e+02 Score=30.74 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=37.6
Q ss_pred EecCCCCCCHHHHHHHHHhCCCeEEEee-----------cCCCHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 010449 26 CTLGPASRSVPMLEKLLRAGMNVARFNF-----------SHGTHEYQQETLNNLRAAMHNTQILCAVML 83 (510)
Q Consensus 26 ~TiGp~~~~~~~l~~li~~G~~~~RiN~-----------sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~ 83 (510)
.|+ |=.-++|.-++|.++|+|+.=.++ ..-+.++..+.++.+.+++++.+.-+-++.
T Consensus 152 ~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~ 219 (268)
T PF09370_consen 152 FTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLC 219 (268)
T ss_dssp EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEE
T ss_pred eee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 344 334589999999999999999888 234678888899999999887765554443
No 451
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=35.48 E-value=1.2e+02 Score=30.45 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=46.4
Q ss_pred CCeEEEEec-----CCCCCC-HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHh-cCCc-EEEEe
Q 010449 20 PKTKIVCTL-----GPASRS-VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHN-TQIL-CAVML 83 (510)
Q Consensus 20 ~~tkIi~Ti-----Gp~~~~-~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~-~~~~-v~i~~ 83 (510)
..+|+|++- .|+.++ .+.+++|.+.|.|+.+|-..=-+.+...++++..+++.++ .+.| +++.+
T Consensus 134 ~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~M 205 (253)
T PRK02412 134 HGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSM 205 (253)
T ss_pred cCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 579999987 333222 3577889999999999999888888888888877776543 4555 44544
No 452
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.48 E-value=1.2e+02 Score=31.99 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHH
Q 010449 20 PKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLR 69 (510)
Q Consensus 20 ~~tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir 69 (510)
+++|+.+-+=|...+.+.++...++|++++|+-+.-...+...+.++.+|
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak 125 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLAR 125 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHH
Confidence 46888775657667789999999999999999663333343333444333
No 453
>PRK07048 serine/threonine dehydratase; Validated
Probab=35.38 E-value=5.1e+02 Score=26.58 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHHHHHHHHHhcccch
Q 010449 282 MMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDY 361 (510)
Q Consensus 282 ~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m~~i~~~aE~~~~~ 361 (510)
-+...|+..|.|+.+- .|..+.-..+...-..|++.+...+ +..++.+...++.++ ....|
T Consensus 86 alA~~a~~~G~~~~vv-----------vp~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~--~g~~~ 146 (321)
T PRK07048 86 AIALSARLLGIPATIV-----------MPQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEE--RGLTL 146 (321)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHh--cCCEE
Confidence 4456899999999763 2222222234555567999877653 234555544444332 11111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhh----CCCCcEEEE
Q 010449 362 RAVFKEMIRSTPLPMSPLESLASSAVRTANKA-RAKLIVVLTRGGTTAKLVAKY----RPAVPILSV 423 (510)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ia~~av~~A~~~-~a~aIvv~T~sG~tA~~iSr~----RP~~PIiav 423 (510)
-..|. .+ ...+.-...+.++.+++ ..+.||+..-+|.|..-++++ +|...|+++
T Consensus 147 ~~~~~-------~~-~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigv 205 (321)
T PRK07048 147 IPPYD-------HP-HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGV 205 (321)
T ss_pred ECCCC-------Cc-chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 11110 01 11111223345566665 469999999999997666664 799999999
No 454
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.31 E-value=4.4e+02 Score=25.77 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred hcHHHHHhccCcCCCCEEEEcC--CCCHHHHHHHHHHhccCCCCceEEEEec----------------CHHHHhchHHHH
Q 010449 193 KDKEDILRWGVPNNIDMIALSF--VRKGSDLVNVRKVLGPHAKNIQLMSKVE----------------NQEGVVNFDDIL 254 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sf--V~sa~dv~~vr~~l~~~~~~~~IiakIE----------------t~~av~nldeI~ 254 (510)
.+.+++ +..++.|+|.+++.. .++++.+.++.+.+....--+.+=+|+- ..+.++-+..+.
T Consensus 81 ~s~~d~-~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 159 (243)
T cd04731 81 RSLEDA-RRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVE 159 (243)
T ss_pred CCHHHH-HHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHH
Q ss_pred hh-cCeeEE-eCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEe
Q 010449 255 RE-TDSFMV-ARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVML 331 (510)
Q Consensus 255 ~~-~DgI~I-grgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imL 331 (510)
+. +|.+.+ ++..=|..-++ -.+.+-+.++..+.|++.+..+- ...|+..+... |+|++|+
T Consensus 160 ~~G~d~i~v~~i~~~g~~~g~-----~~~~i~~i~~~~~~pvia~GGi~------------~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 160 ELGAGEILLTSMDRDGTKKGY-----DLELIRAVSSAVNIPVIASGGAG------------KPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HCCCCEEEEeccCCCCCCCCC-----CHHHHHHHHhhCCCCEEEeCCCC------------CHHHHHHHHHhCCCCEEEE
Q ss_pred ccCCCCCCCHHHHHHHH
Q 010449 332 SGESAAGAYPEIAVKIM 348 (510)
Q Consensus 332 s~Eta~G~yP~~~V~~m 348 (510)
+.--..|.+..+.+...
T Consensus 223 g~al~~~~~~~~~~~~~ 239 (243)
T cd04731 223 ASIFHFGEYTIAELKEY 239 (243)
T ss_pred eHHHHcCCCCHHHHHHH
No 455
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.16 E-value=72 Score=33.22 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCH------------------HHHHHHHHHhccCCCCceEEEEecCHHHHhchHH
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKG------------------SDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDD 252 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa------------------~dv~~vr~~l~~~~~~~~IiakIEt~~av~nlde 252 (510)
+..+..++.+.+.+.|++.|.+. .|++ +.+.++++.+ .++.||+- =.....+++.+
T Consensus 139 ~~~~~~~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~----~~ipVi~N-GdI~s~~da~~ 212 (318)
T TIGR00742 139 SYEFLCDFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF----PHLTIEIN-GGIKNSEQIKQ 212 (318)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC----CCCcEEEE-CCcCCHHHHHH
Q ss_pred HHhhcCeeEEeCCccc
Q 010449 253 ILRETDSFMVARGDLG 268 (510)
Q Consensus 253 I~~~~DgI~IgrgDLg 268 (510)
.++-+||+|||||=|+
T Consensus 213 ~l~g~dgVMigRgal~ 228 (318)
T TIGR00742 213 HLSHVDGVMVGREAYE 228 (318)
T ss_pred HHhCCCEEEECHHHHh
No 456
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=35.15 E-value=47 Score=32.62 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=31.8
Q ss_pred ccCcCCCCEEEEcCCCCHHH--------HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh
Q 010449 201 WGVPNNIDMIALSFVRKGSD--------LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR 255 (510)
Q Consensus 201 ~a~~~g~d~I~~sfV~sa~d--------v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~ 255 (510)
.|.+.|++||+ |||...+| +++++++++..+.+++|++ .+++|.+++.+
T Consensus 117 ~Aa~aGa~yis-pyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~ 173 (213)
T TIGR00875 117 LAAKAGATYVS-PFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLE 173 (213)
T ss_pred HHHHcCCCEEE-eecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHH
Confidence 45677999776 99988876 4555555655555666654 35555655554
No 457
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=34.92 E-value=1.5e+02 Score=29.18 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=39.6
Q ss_pred HHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc
Q 010449 35 VPMLEKLLRAG-MNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL 78 (510)
Q Consensus 35 ~~~l~~li~~G-~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~ 78 (510)
.+.+++.++.| ++.+-+-.-+.+..++.+..+.+++.++++|.+
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~ 73 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAA 73 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 57899999999 799999999999999999999999999988754
No 458
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=34.89 E-value=4e+02 Score=27.19 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=56.4
Q ss_pred HHHHhh-cCeeEEeC--CcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHH-HHHcCC
Q 010449 251 DDILRE-TDSFMVAR--GDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVAN-AVLDGT 326 (510)
Q Consensus 251 deI~~~-~DgI~Igr--gDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~-av~~G~ 326 (510)
+..++. .||++++- |+. ..+..++-..+.+.+++.++ ...|++.-+- ..+-.|....+. |-..|+
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~-~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEP-GSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------ALNHDETLELTKFAEEAGA 96 (294)
T ss_pred HHHHHcCCCEEEECccCccc-ccCCHHHHHHHHHHHHHHhC-CCCcEEEECC---------cchHHHHHHHHHHHHHcCC
Confidence 333433 68999861 221 23444554455555555432 3467765332 334445544444 566799
Q ss_pred ceEEeccCCCCCCCHHHHHHHHHHHHHHH-hc
Q 010449 327 DCVMLSGESAAGAYPEIAVKIMRRICIEA-ES 357 (510)
Q Consensus 327 D~imLs~Eta~G~yP~~~V~~m~~i~~~a-E~ 357 (510)
|++|+..=--...-+-+.++.-..||..+ +-
T Consensus 97 d~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~l 128 (294)
T TIGR02313 97 DAAMVIVPYYNKPNQEALYDHFAEVADAVPDF 128 (294)
T ss_pred CEEEEcCccCCCCCHHHHHHHHHHHHHhccCC
Confidence 99999865544444578889999999887 53
No 459
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=34.80 E-value=96 Score=27.30 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCch------HHHHHHhhCCCCcEEEE
Q 010449 382 LASSAVRTANKARAKLIVVLTRGGT------TAKLVAKYRPAVPILSV 423 (510)
Q Consensus 382 ia~~av~~A~~~~a~aIvv~T~sG~------tA~~iSr~RP~~PIiav 423 (510)
.+...++.|++.+++.||+-|+.+. +|..+. .+.+|||+.+
T Consensus 91 p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~-~~a~~pVLvv 137 (144)
T PRK15118 91 LGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLI-NTVHVDMLIV 137 (144)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHH-hhCCCCEEEe
Confidence 3445567889999999999998432 233333 3467999999
No 460
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.75 E-value=3.5e+02 Score=26.89 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=60.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHH--HHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHH
Q 010449 208 DMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQE--GVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIY 285 (510)
Q Consensus 208 d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~--av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~ 285 (510)
..++.||-. .+.+..+++...+. -++.+....+... ...+..+.+.......+. +. ...+....++
T Consensus 150 ~v~i~SF~~-~~~l~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-------~~---~~~~~~~~v~ 217 (265)
T cd08564 150 QVHFSSFLH-YDRLDLLKALRPNK-LNVPIALLFNEVKSPSPLDFLEQAKYYNATWVN-------FS---YDFWTEEFVK 217 (265)
T ss_pred CEEEEecCc-hhHHHHHHHhCcCC-CCceEEEEecCCCCcccccHHHHHHhcCCceee-------ec---hhhhhHHHHH
Confidence 567777765 35556666654321 1244433333221 112222223322222222 11 2235678999
Q ss_pred HHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHHH
Q 010449 286 KCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIM 348 (510)
Q Consensus 286 ~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~m 348 (510)
.++++|+++++-|+ ++. .-...+...++..|+|++.- .||..+.+++
T Consensus 218 ~~~~~Gl~v~~wT~--~~~-------~n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 218 KAHENGLKVMTYFD--EPV-------NDNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred HHHHcCCEEEEecC--CCC-------CCCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 99999999999872 111 11133445577789999754 5887776654
No 461
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.73 E-value=71 Score=34.08 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=56.3
Q ss_pred chHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCce
Q 010449 249 NFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDC 328 (510)
Q Consensus 249 nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~ 328 (510)
=..+.++-.|.+++.=-|.|+-. ..-......++++|.++|||++| | ..|-|--- ..+||
T Consensus 71 Pt~~mL~~vDvlvfDiQDvG~R~--YTYi~Tl~~~MeAaa~~g~~vvV----L----DRPNPl~G----------~~veG 130 (365)
T PF07075_consen 71 PTPEMLKGVDVLVFDIQDVGVRF--YTYISTLYYVMEAAAENGKPVVV----L----DRPNPLGG----------RYVEG 130 (365)
T ss_pred CCHHHHhCCCEEEEeCccCCchH--HHHHHHHHHHHHHHHHhCCeEEE----E----eCCCCCCC----------Ccccc
Confidence 34677778999999988888743 24456678899999999999997 3 55566322 23667
Q ss_pred EEecc--CCCCCCCHHHHH
Q 010449 329 VMLSG--ESAAGAYPEIAV 345 (510)
Q Consensus 329 imLs~--Eta~G~yP~~~V 345 (510)
-+|.. ++-+|.||+=..
T Consensus 131 p~l~~~~~SFvG~~~iP~r 149 (365)
T PF07075_consen 131 PILDPEFRSFVGMYPIPIR 149 (365)
T ss_pred CCcCcccccccCCCccccc
Confidence 77755 789999998544
No 462
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.72 E-value=2e+02 Score=27.95 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred ChhcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCc----
Q 010449 191 TEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGD---- 266 (510)
Q Consensus 191 t~~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgD---- 266 (510)
...+.+.+.+.+-+.+.|+|-+-.-++.+.++.+++.. +..+.-...+.....+.++.+....+|.+++.-+.
T Consensus 62 ~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~---~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~G 138 (210)
T PRK01222 62 VNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY---GLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPG 138 (210)
T ss_pred eCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCC
Confidence 34455555455567889999988888888888887653 11222223444444455555555567999997532
Q ss_pred -ccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHc-CCceEEe--ccCCCCCC
Q 010449 267 -LGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD-GTDCVML--SGESAAGA 339 (510)
Q Consensus 267 -Lg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~-G~D~imL--s~Eta~G~ 339 (510)
=|....+..+ . +...+|+++|.-+ .| ..|.+++.. +..++=+ +-|++-|+
T Consensus 139 GtG~~~dw~~l---~-------~~~~~p~~LAGGi--------~p-----eNv~~ai~~~~p~gvDvsSgvE~~~G~ 192 (210)
T PRK01222 139 GTGKTFDWSLL---P-------AGLAKPWILAGGL--------NP-----DNVAEAIRQVRPYGVDVSSGVESAPGI 192 (210)
T ss_pred CCCCccchHHh---h-------hccCCCEEEECCC--------CH-----HHHHHHHHhcCCCEEEecCceECCCCC
Confidence 1222333222 1 1237899998652 12 234555543 4555444 44666673
No 463
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.62 E-value=65 Score=33.26 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=46.5
Q ss_pred cHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEeC
Q 010449 194 DKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVAR 264 (510)
Q Consensus 194 D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Igr 264 (510)
+.+.+ .-+++.|+|.|.+=.. ++++++++.+.++. + .++|---|+ +|+.++++. .|.|.+|.
T Consensus 206 tleea-~~a~~agaDiImLDnm-spe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 206 SLAAA-EEAAAAGADIIMLDNM-SLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 34455 5578999999999887 78899888887753 2 356665555 688888877 79999874
No 464
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=34.57 E-value=2.3e+02 Score=24.10 Aligned_cols=70 Identities=9% Similarity=0.218 Sum_probs=44.5
Q ss_pred CcEEecCCCEEEEEecC-CCCCCccEEecCCCCccccCCCCCEEEEe-CCeEEEEEEEEeCCCCeEEEEEeeCe
Q 010449 99 KPIQLKEGQEITVSTDY-DFKGNEEMITMSYKKLPVDVKPGNTILCA-DGTITLTVLSCDPKSGTVRCRCENTA 170 (510)
Q Consensus 99 ~~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~gd~i~id-DG~i~l~V~~~~~~~~~i~~~v~~~G 170 (510)
..+.+.+|+.+.|.-.. .........+++.. ...+....++.++ +|.+.+.=.+....+....|.+.+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 35899999999998762 21223345556432 2334457788886 69988875444323335899998775
No 465
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=34.36 E-value=1.2e+02 Score=30.39 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=37.5
Q ss_pred HHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceE
Q 010449 251 DDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCV 329 (510)
Q Consensus 251 deI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~i 329 (510)
+.+++. .|+|||| |=+|+. .....+++++.++..+|++. .|... +.+..++|++
T Consensus 26 ~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil------------fp~~~------~~i~~~aDa~ 80 (232)
T PRK04169 26 EAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL------------FPGNI------EGISPGADAY 80 (232)
T ss_pred HHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE------------eCCCc------cccCcCCCEE
Confidence 555554 6999999 444443 13344566666778899996 35543 4566789998
Q ss_pred Eec
Q 010449 330 MLS 332 (510)
Q Consensus 330 mLs 332 (510)
+.-
T Consensus 81 l~~ 83 (232)
T PRK04169 81 LFP 83 (232)
T ss_pred EEE
Confidence 763
No 466
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=34.33 E-value=1.8e+02 Score=29.44 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=62.0
Q ss_pred hcHHHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccC-------CCCceEEEEecCHHHHhchHHHHhhcCeeEEeCC
Q 010449 193 KDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPH-------AKNIQLMSKVENQEGVVNFDDILRETDSFMVARG 265 (510)
Q Consensus 193 ~D~~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~-------~~~~~IiakIEt~~av~nldeI~~~~DgI~Igrg 265 (510)
.|...+...+.+.|+..+.++-+ +.++...+.++.... |-|+.- ..-++.+.++.+.+.+.. +-=+++=|
T Consensus 17 ~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~-~~~vvaIG 93 (256)
T COG0084 17 EDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEH-HPKVVAIG 93 (256)
T ss_pred CCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhc-CCCeEEEE
Confidence 34445547788899998777654 555666555555432 334444 333455555555555543 33444446
Q ss_pred cccCCCCchhH--HHHHH----HHHHHHHHcCCCeEEeh
Q 010449 266 DLGMEIPVEKI--FLAQK----MMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 266 DLg~e~~~~~v--~~~qk----~ii~~~~~~gkpvivaT 298 (510)
+-|.++-+..- ...|+ +-++.|++.+||+++-+
T Consensus 94 EiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~ 132 (256)
T COG0084 94 EIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHT 132 (256)
T ss_pred ecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 77777655332 23354 56788999999999854
No 467
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.31 E-value=5.4e+02 Score=26.72 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhcHHHHHhccCcCCCCEEEE-------------cCCCCH----------------HHHHHHHHHhccCCCCceEEEEe-
Q 010449 192 EKDKEDILRWGVPNNIDMIAL-------------SFVRKG----------------SDLVNVRKVLGPHAKNIQLMSKV- 241 (510)
Q Consensus 192 ~~D~~di~~~a~~~g~d~I~~-------------sfV~sa----------------~dv~~vr~~l~~~~~~~~IiakI- 241 (510)
+...+.. +.+.+.|+|+|=+ |..+.. +-++++|+.+ |.+..|..+|
T Consensus 149 ~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---G~d~~v~vris 224 (338)
T cd04733 149 DRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---GPGFPVGIKLN 224 (338)
T ss_pred HHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---CCCCeEEEEEc
Q ss_pred ---------cCHHHHhchHHHHhh-cCeeEEeCCcccCCC-------CchhHHHHHHHHHHHHHHc-CCCeEEehhhhHh
Q 010449 242 ---------ENQEGVVNFDDILRE-TDSFMVARGDLGMEI-------PVEKIFLAQKMMIYKCNLV-GKPVVTATQMLES 303 (510)
Q Consensus 242 ---------Et~~av~nldeI~~~-~DgI~IgrgDLg~e~-------~~~~v~~~qk~ii~~~~~~-gkpvivaTqmLeS 303 (510)
.-.++++-++.+.+. .|.|-|..|-..-.. +...-+..+....+..+++ +.||+....+-
T Consensus 225 ~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~-- 302 (338)
T cd04733 225 SADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFR-- 302 (338)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCC--
Q ss_pred hhcCCCCChHhHHHHHHHHHcC-CceEEec
Q 010449 304 MIKSPRPTRAEATDVANAVLDG-TDCVMLS 332 (510)
Q Consensus 304 M~~~~~PtraEv~Dv~~av~~G-~D~imLs 332 (510)
...+...++.+| +|.|+++
T Consensus 303 ----------t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 303 ----------TRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred ----------CHHHHHHHHHcCCCCeeeeC
No 468
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=34.07 E-value=1.2e+02 Score=31.20 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=40.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCC
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQI 77 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~ 77 (510)
.+..-+ .-+.+.+.+++.+++|.+..=++.||-+.++..+.-+.+-+.+...|.
T Consensus 79 PV~lHL-DHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv 132 (285)
T PRK07709 79 PVAIHL-DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV 132 (285)
T ss_pred cEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 455555 345579999999999999999999999988766555555555555553
No 469
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=34.05 E-value=2.9e+02 Score=28.49 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred CceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EEehhhhHhhhcCCC
Q 010449 234 NIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VTATQMLESMIKSPR 309 (510)
Q Consensus 234 ~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---ivaTqmLeSM~~~~~ 309 (510)
.+.+...+..-..++.+..=++. .+-||+. |-++|+++=...-+++++.|+.+|..| +-.-.=-|.-+....
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 149 (286)
T PRK12738 74 NMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Q ss_pred CC--hHhHHHHHHHHHc-CCceEEeccCCCCCCC---HHHHHHHHHHHHHHH
Q 010449 310 PT--RAEATDVANAVLD-GTDCVMLSGESAAGAY---PEIAVKIMRRICIEA 355 (510)
Q Consensus 310 Pt--raEv~Dv~~av~~-G~D~imLs~Eta~G~y---P~~~V~~m~~i~~~a 355 (510)
.. .....+...++.. |+|++-.+--|+.|.| |.--...+.+|...+
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 150 ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred chhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh
No 470
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=33.85 E-value=69 Score=31.66 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEe--cCHHHHhchHHHHhhc--CeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChH
Q 010449 238 MSKV--ENQEGVVNFDDILRET--DSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRA 313 (510)
Q Consensus 238 iakI--Et~~av~nldeI~~~~--DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~Ptra 313 (510)
+.|| +....-+.+++++..+ |+|||| |=+++. +.+....+.+-+.++ ..|++. .|..
T Consensus 3 ~~~iDP~K~~~~~~~~~~~~~~gtdai~vG-GS~~v~---~~~~~~~~~ik~~~~--~~Pvil------------fp~~- 63 (219)
T cd02812 3 VTKLDPDKELVDEEIAKLAEESGTDAIMVG-GSDGVS---STLDNVVRLIKRIRR--PVPVIL------------FPSN- 63 (219)
T ss_pred ceeeCCCCCCCHHHHHHHHHhcCCCEEEEC-Cccchh---hhHHHHHHHHHHhcC--CCCEEE------------eCCC-
Q ss_pred hHHHHHHHHHcCCceEEe
Q 010449 314 EATDVANAVLDGTDCVML 331 (510)
Q Consensus 314 Ev~Dv~~av~~G~D~imL 331 (510)
.+.+..|+|+++.
T Consensus 64 -----~~~i~~~aDa~l~ 76 (219)
T cd02812 64 -----PEAVSPGADAYLF 76 (219)
T ss_pred -----ccccCcCCCEEEE
No 471
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=33.79 E-value=66 Score=31.88 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=45.7
Q ss_pred hccCcCCCCEEEEcCCCC-----HHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-------cCeeEEeCCcc
Q 010449 200 RWGVPNNIDMIALSFVRK-----GSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-------TDSFMVARGDL 267 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~s-----a~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-------~DgI~IgrgDL 267 (510)
+...+.|++.+.+--+.. .-+...+++.... .++++|+- -++.+++++.+. +||+|+||+=+
T Consensus 153 ~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvias----GGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 153 ERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVAS----GGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred HHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEEe----CCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 455788999888765533 1234444444332 24566662 345555555432 69999999988
Q ss_pred cCCCCchhHHHH
Q 010449 268 GMEIPVEKIFLA 279 (510)
Q Consensus 268 g~e~~~~~v~~~ 279 (510)
.-.+++++....
T Consensus 227 ~g~~~~~~~~~~ 238 (241)
T PRK14024 227 AGAFTLPEALAV 238 (241)
T ss_pred cCCCCHHHHHHH
Confidence 888888765433
No 472
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.73 E-value=1.7e+02 Score=30.06 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcE
Q 010449 31 ASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILC 79 (510)
Q Consensus 31 ~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v 79 (510)
.+.+.|.+++.+++|.+..=++.||-+.++..+.-+.+.+.+..+|.++
T Consensus 83 H~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 83 HGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3457899999999999999999999998887777666666676666544
No 473
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.72 E-value=4.8e+02 Score=25.80 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=67.1
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----cCeeEEeCCcccCCCCchhHH--------
Q 010449 210 IALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFMVARGDLGMEIPVEKIF-------- 277 (510)
Q Consensus 210 I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~DgI~IgrgDLg~e~~~~~v~-------- 277 (510)
|.+=...++++...+.+.+-+.|-. .+=.-.-|+.+++.++++.+. .+.++||-|= -+..+.+.
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT---Vl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGS---IVDAATAALYIQLGAN 93 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEe---CcCHHHHHHHHHcCCC
Confidence 4444567778877777777665532 222334677788777777532 3457777542 12222222
Q ss_pred -----HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 278 -----LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 278 -----~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
..-..+++.|+++|.|++ |--.=.+++..|...|+|.+=|=
T Consensus 94 FiVsP~~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred EEECCCCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 234689999999999986 33334567788999999998774
No 474
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=33.67 E-value=3.4e+02 Score=27.92 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCe---EE
Q 010449 221 LVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPV---VT 296 (510)
Q Consensus 221 v~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpv---iv 296 (510)
+..++.+.... ++.|...+..-..++.+..-++. .+.||+. |-.+|+++=...-+++++.|+++|..| +-
T Consensus 62 ~~~~~~~a~~~--~vPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG 135 (287)
T PF01116_consen 62 AAMVKAAAEEA--SVPVALHLDHGKDFEDIKRAIDAGFTSVMID----GSALPFEENIAITREVVEYAHAYGVSVEAELG 135 (287)
T ss_dssp HHHHHHHHHHS--TSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-----TTS-HHHHHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHHHHc--CCCEEeecccCCCHHHHHHHHHhCccccccc----CCcCCHHHHHHHHHHHHHhhhhhCCEEEEEee
Q ss_pred ehhhhHhhhcCC---CCChHhHHHHHHHH-HcCCceEEeccCCCCCCCHH-----HHHHHHHHHHHHH
Q 010449 297 ATQMLESMIKSP---RPTRAEATDVANAV-LDGTDCVMLSGESAAGAYPE-----IAVKIMRRICIEA 355 (510)
Q Consensus 297 aTqmLeSM~~~~---~PtraEv~Dv~~av-~~G~D~imLs~Eta~G~yP~-----~~V~~m~~i~~~a 355 (510)
...--|.-..+. .-...+-.++..++ .-|+|++-.|-=|+.|.|+- -=.+.+.+|.+.+
T Consensus 136 ~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 136 HIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp BSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred eeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
No 475
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=33.67 E-value=2e+02 Score=23.39 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=39.2
Q ss_pred CeeEeeecCCCCcEEecCCCEEEEEecCCCCCCccEEe-cCCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEE
Q 010449 88 PEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMIT-MSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRC 166 (510)
Q Consensus 88 p~iR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~-v~~~~~~~~v~~gd~i~idDG~i~l~V~~~~~~~~~i~~~v 166 (510)
|+|++ .+. .....+|+.++|.-...-.-....-+ -+... +..+..+.++++.+.+.-...+ +.+..+|.+
T Consensus 2 p~i~~-~~~---~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~----~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~A 72 (88)
T cd05851 2 ADINV-KFK---DTYALKGQNVTLECFALGNPVPVIRWRKILEP----MPATAEISMSGAVLKIFNIQPE-DEGTYECEA 72 (88)
T ss_pred CceEE-ccc---cEEEeCCCcEEEEEEecccCCCEEEEEECCcC----CCCCCEEecCCCEEEECcCChh-hCEEEEEEE
Confidence 55666 222 36788999999987632111122222 23222 2334566666665444333222 456789998
Q ss_pred eeC
Q 010449 167 ENT 169 (510)
Q Consensus 167 ~~~ 169 (510)
.|.
T Consensus 73 ~N~ 75 (88)
T cd05851 73 ENI 75 (88)
T ss_pred EcC
Confidence 876
No 476
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=33.52 E-value=72 Score=32.44 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=38.3
Q ss_pred HHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEE
Q 010449 245 EGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVT 296 (510)
Q Consensus 245 ~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviv 296 (510)
++.+..+|+++.+|+++|-=|-|.. +-....+..++.+++.|+|+++
T Consensus 44 ~~~eE~~e~~kia~AL~INIGTL~~-----~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 44 DAPEEVEEFAKIADALLINIGTLSA-----ERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred cCHHHHHHHHHhccceEEeeccCCh-----HHHHHHHHHHHHHHhcCCCEEe
Confidence 4556788889999999998777754 5566778889999999999986
No 477
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.39 E-value=1.3e+02 Score=29.22 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCc
Q 010449 35 VPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQIL 78 (510)
Q Consensus 35 ~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~ 78 (510)
.+.+++++++|+..+.|.--+.+.++..+....+++.+++++.+
T Consensus 22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~ 65 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQAR 65 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46899999999999999999999999999999999888877654
No 478
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.28 E-value=3.2e+02 Score=24.84 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=37.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHH---------HHHHHHHHHHHhcC
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQ---------ETLNNLRAAMHNTQ 76 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~---------~~i~~ir~~~~~~~ 76 (510)
.+..+..+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.+ .|
T Consensus 88 ~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g 149 (216)
T smart00729 88 EITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE-AG 149 (216)
T ss_pred EEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH-hC
Confidence 3333334556789999999999999888888888776654 45666666543 44
No 479
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=33.26 E-value=3.5e+02 Score=27.59 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=57.4
Q ss_pred HHHHHhccCcCCCCEEEEcCC-------CCHHHHHHHHHHhccCCCCceEEEEec---CHHHHhchHHHHhh-cCeeEEe
Q 010449 195 KEDILRWGVPNNIDMIALSFV-------RKGSDLVNVRKVLGPHAKNIQLMSKVE---NQEGVVNFDDILRE-TDSFMVA 263 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV-------~sa~dv~~vr~~l~~~~~~~~IiakIE---t~~av~nldeI~~~-~DgI~Ig 263 (510)
.+.+.+|.++.|+++|++.-- ...|..+-++..+.....++.|++-+- |.++++....-.+. +|++|+.
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 333347889999999886532 223333333444444556788888885 34566655554443 6999998
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 010449 264 RGDLGMEIPVEKIFLAQKMMIYKCNLV-GKPVVTA 297 (510)
Q Consensus 264 rgDLg~e~~~~~v~~~qk~ii~~~~~~-gkpviva 297 (510)
+-..- ..+.+.+.. ..-..|.+. +.|+++-
T Consensus 103 pP~y~-~~~~~~l~~---~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 103 VPYYN-KPNQEALYD---HFAEVADAVPDFPIIIY 133 (294)
T ss_pred CccCC-CCCHHHHHH---HHHHHHHhccCCCEEEE
Confidence 64331 122234433 444445556 7898864
No 480
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=33.08 E-value=81 Score=34.37 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHhccC-----------------C----CCceEEEEecCHHHHhchHHHHhhc----C-
Q 010449 205 NNIDMIALSFVRKGSDLVNVRKVLGPH-----------------A----KNIQLMSKVENQEGVVNFDDILRET----D- 258 (510)
Q Consensus 205 ~g~d~I~~sfV~sa~dv~~vr~~l~~~-----------------~----~~~~IiakIEt~~av~nldeI~~~~----D- 258 (510)
.++-.|++||.+|++++..+.+++... | +.+.+|..+|+.+++-+...|.... |
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 466779999999999999997765311 1 1355788889999998888887752 2
Q ss_pred ---eeEEeCCcccCCCCch----hHHHHHHHHHHHHHHcCCCe
Q 010449 259 ---SFMVARGDLGMEIPVE----KIFLAQKMMIYKCNLVGKPV 294 (510)
Q Consensus 259 ---gI~IgrgDLg~e~~~~----~v~~~qk~ii~~~~~~gkpv 294 (510)
-+|+||.|=++.+|+- .+..+-.++-+...+.|.|+
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i 245 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPI 245 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 8999999999999973 33344445666666678875
No 481
>PRK08328 hypothetical protein; Provisional
Probab=32.97 E-value=1.4e+02 Score=29.36 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 224 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 224 vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 445556666777776644432 336788888888888776322 234556667899999998764
No 482
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.91 E-value=2.1e+02 Score=27.87 Aligned_cols=67 Identities=9% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHhccCcCCCCEEEEcCCC-----CHHHHHHHHHHhccCCCCceEEE--EecCHHHHhchHHHHhh-cCeeEEeCCcc
Q 010449 196 EDILRWGVPNNIDMIALSFVR-----KGSDLVNVRKVLGPHAKNIQLMS--KVENQEGVVNFDDILRE-TDSFMVARGDL 267 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~-----sa~dv~~vr~~l~~~~~~~~Iia--kIEt~~av~nldeI~~~-~DgI~IgrgDL 267 (510)
.++.+...+.|++++.+=--. ..+....+++..+..+ +.++. =|-+.+ +++..++. +|++++|...+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~--~~l~v~GGi~~~~---~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVG--VPVQLGGGIRSAE---DAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcC--CcEEEcCCcCCHH---HHHHHHHcCCCEEEEChHHh
Confidence 334366678999988654333 2234556666655432 33333 233333 33444444 79999987665
No 483
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.73 E-value=3.9e+02 Score=27.01 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred CChhcHHHHHhccCcCCCCEEEEcCC-------------CCHHHHHHHHHHhccCCCCceEEEEec-------CHHHHhc
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALSFV-------------RKGSDLVNVRKVLGPHAKNIQLMSKVE-------NQEGVVN 249 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~sfV-------------~sa~dv~~vr~~l~~~~~~~~IiakIE-------t~~av~n 249 (510)
++-+|.--- +.+-+.|+|.|.+..- -+.+++..--+.+.+.-+.+.|++=++ -.++++|
T Consensus 17 ~~ayD~~sA-~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 17 LTAYDYPTA-KLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Q ss_pred hHHHHh-h-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeE--------EehhhhHhhhcCCCCChHhH--HH
Q 010449 250 FDDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV--------TATQMLESMIKSPRPTRAEA--TD 317 (510)
Q Consensus 250 ldeI~~-~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvi--------vaTqmLeSM~~~~~PtraEv--~D 317 (510)
.-.+++ + ++||.|--|+ .+...|+++.++|.||+ ..+++=.-.+..-...+++- .+
T Consensus 96 a~r~~~~aGa~aVkiEd~~------------~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGGA------------EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCcH------------HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceEEe
Q 010449 318 VANAVLDGTDCVML 331 (510)
Q Consensus 318 v~~av~~G~D~imL 331 (510)
.......|+|+++|
T Consensus 164 a~a~~~AGA~~i~l 177 (254)
T cd06557 164 ALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHCCCCEEEE
No 484
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.70 E-value=71 Score=32.80 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHHhccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHH--hchHHHHhh-cCeeEEe
Q 010449 196 EDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGV--VNFDDILRE-TDSFMVA 263 (510)
Q Consensus 196 ~di~~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av--~nldeI~~~-~DgI~Ig 263 (510)
+.. .-+++.|+|.|.+=.. ++++++++.+.++.. . .+|---|+ +|+.++++. .|.|-+|
T Consensus 205 eea-~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~~---~----~leaSGGI~~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 205 DQL-EEALELGVDAVLLDNM-TPDTLREAVAIVAGR---A----ITEASGRITPETAPAIAASGVDLISVG 266 (281)
T ss_pred HHH-HHHHHcCCCEEEeCCC-CHHHHHHHHHHhCCC---c----eEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 345 4567899999999887 778888888877532 1 26665555 688888887 7999987
No 485
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.70 E-value=1.4e+02 Score=31.51 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
-++.+++.|++.+..+.+-+.-+... -+|+.++++-.|.|+-+-.+ +..+..+-++|+++++|++.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 34456677777777777766444433 25777888888988876433 244556788999999998765
No 486
>PRK14847 hypothetical protein; Provisional
Probab=32.56 E-value=6.2e+02 Score=26.72 Aligned_cols=162 Identities=9% Similarity=0.033 Sum_probs=95.5
Q ss_pred CcccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCC-CCHHHHHHHHHHhccCC--CCceEEEEecCHHHHhchHHH
Q 010449 177 NVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFV-RKGSDLVNVRKVLGPHA--KNIQLMSKVENQEGVVNFDDI 253 (510)
Q Consensus 177 ~vnlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV-~sa~dv~~vr~~l~~~~--~~~~IiakIEt~~av~nldeI 253 (510)
|-.-||. .+|..++..|.+...+.|+|.|=+.|- -+.+|.+.++++..... .+..|.+-.=... +.++.-
T Consensus 43 GeQ~pGv-----~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~--~dId~a 115 (333)
T PRK14847 43 GNQALIE-----PMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSRP--DLIART 115 (333)
T ss_pred cCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCcH--HHHHHH
Confidence 3444555 368888888877777899999988875 47777777877765421 1333433221111 222222
Q ss_pred Hhh-c----C--eeEEeCCcccCC----CCchhHHHHHHHHHHHHHHcCC-------CeEEehhhhHhhhcCCCCChHhH
Q 010449 254 LRE-T----D--SFMVARGDLGME----IPVEKIFLAQKMMIYKCNLVGK-------PVVTATQMLESMIKSPRPTRAEA 315 (510)
Q Consensus 254 ~~~-~----D--gI~IgrgDLg~e----~~~~~v~~~qk~ii~~~~~~gk-------pvivaTqmLeSM~~~~~PtraEv 315 (510)
++. . + .++++-.|+-.+ ...+++...-.+.+..|+.+|. -|-+..+ --||++.
T Consensus 116 ~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~E---------DasRad~ 186 (333)
T PRK14847 116 FEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPE---------TFSLAEL 186 (333)
T ss_pred HHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeee---------cCCCCCH
Confidence 222 1 2 234444454222 3346777777888889999954 3333211 3566664
Q ss_pred ---HHHHHHH-Hc------CCceEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 010449 316 ---TDVANAV-LD------GTDCVMLSGESAAGAYPEIAVKIMRRICIEA 355 (510)
Q Consensus 316 ---~Dv~~av-~~------G~D~imLs~Eta~G~yP~~~V~~m~~i~~~a 355 (510)
.+++.++ .. |+|-+-|+ +|-=-.-|.+.-+.++.+++..
T Consensus 187 dfL~~~~~~a~~~~ga~r~~a~~i~l~-DTVG~~~P~~~~~~i~~l~~~~ 235 (333)
T PRK14847 187 DFAREVCDAVSAIWGPTPQRKMIINLP-ATVESSTANVYADQIEWMHRSL 235 (333)
T ss_pred HHHHHHHHHHHHHhCCCccCCcEEEeC-CccccCCHHHHHHHHHHHHHhc
Confidence 3444543 33 46667776 7766677999888888887543
No 487
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.53 E-value=1.4e+02 Score=31.33 Aligned_cols=67 Identities=10% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhhcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTA 297 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpviva 297 (510)
.+..+++.+.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.++ ..+..+-..|.++|+|.+.+
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 34555666777777777766554432 357888888889888874332 34455778999999998764
No 488
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=32.46 E-value=2.6e+02 Score=28.40 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=54.1
Q ss_pred HHHHhccCCCCceEEEEecCHHHHhchHHHHhh--cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEehhhh
Q 010449 224 VRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE--TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQML 301 (510)
Q Consensus 224 vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~--~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaTqmL 301 (510)
+++.|.....-.-.+..+-++... |++.. .|.++|. .|=+.-.+..++ .++.+++..|.++++
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~----E~~a~~GfD~v~iD-----~EHg~~~~~~l~-~~i~a~~~~g~~~lV----- 73 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMA----EIAATSGYDWLLID-----GEHAPNTIQDLY-HQLQAIAPYASQPVI----- 73 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHH----HHHHHcCCCEEEEc-----cccCCCCHHHHH-HHHHHHHhcCCCeEE-----
Confidence 555565432223355556555443 44444 5999995 233333444443 577788899998876
Q ss_pred HhhhcCCCCChHhHHHHHHHHHcCCceEEec
Q 010449 302 ESMIKSPRPTRAEATDVANAVLDGTDCVMLS 332 (510)
Q Consensus 302 eSM~~~~~PtraEv~Dv~~av~~G~D~imLs 332 (510)
.-|.+++ ..+..+...|+++||+-
T Consensus 74 ----Rvp~~~~---~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 74 ----RPVEGSK---PLIKQVLDIGAQTLLIP 97 (267)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCeeEec
Confidence 4344443 56678888999999995
No 489
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=32.23 E-value=44 Score=30.66 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHH
Q 010449 280 QKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANA 321 (510)
Q Consensus 280 qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~a 321 (510)
...+++.-.++|+|+++||. .+|.|.- |..++..
T Consensus 65 ~~evi~~I~~~G~PviVAtD------V~p~P~~--V~Kia~~ 98 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD------VSPPPET--VKKIARS 98 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec------CCCCcHH--HHHHHHH
Confidence 45788888999999999997 3455543 4455553
No 490
>PRK00865 glutamate racemase; Provisional
Probab=32.23 E-value=3.2e+02 Score=27.34 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred ccCCccccCCCCChhcHHHHHhccCcCCCCEEEEcCCCCHH--HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh
Q 010449 179 NLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGS--DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE 256 (510)
Q Consensus 179 nlp~~~~~lp~lt~~D~~di~~~a~~~g~d~I~~sfV~sa~--dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~ 256 (510)
++|-..-+-..+...-.+.+ ++..+.|+|+|+++ ++++. -+.++|+.+ +++|+. || .++..+-..-..
T Consensus 41 ~~PYG~ks~~~i~~~~~~~~-~~L~~~g~d~iVIa-CNTa~~~~l~~lr~~~-----~iPvig-i~--~a~~~a~~~~~~ 110 (261)
T PRK00865 41 RFPYGEKSEEEIRERTLEIV-EFLLEYGVKMLVIA-CNTASAVALPDLRERY-----DIPVVG-IV--PAIKPAAALTRN 110 (261)
T ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHhCCCCEEEEe-CchHHHHHHHHHHHhC-----CCCEEe-eH--HHHHHHHHhcCC
Q ss_pred cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChHhHHHHHH-----HHHcCCceEE
Q 010449 257 TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV-TATQMLESMIKSPRPTRAEATDVAN-----AVLDGTDCVM 330 (510)
Q Consensus 257 ~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvi-vaTqmLeSM~~~~~PtraEv~Dv~~-----av~~G~D~im 330 (510)
.---++| .-+--.-...|+.+-+.. .+.-+. +.+.-+-.++++......+..+... ...+|+|+++
T Consensus 111 ~~igVLa------T~~Ti~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iI 182 (261)
T PRK00865 111 GRIGVLA------TPGTVKSAAYRDLIARFA--PDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLV 182 (261)
T ss_pred CeEEEEE------CHHHhhchHHHHHHHHhC--CCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEE
Q ss_pred eccCCCCCCCHH
Q 010449 331 LSGESAAGAYPE 342 (510)
Q Consensus 331 Ls~Eta~G~yP~ 342 (510)
|. ...||.
T Consensus 183 LG----CTh~p~ 190 (261)
T PRK00865 183 LG----CTHYPL 190 (261)
T ss_pred EC----CcCHHH
No 491
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=32.13 E-value=5.6e+02 Score=26.06 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChhcHHHHHhccCcCCCCEEEEc-------------CCCCHHHHHHHHHHhccCCCCceEEEEec---C----HHHHhc
Q 010449 190 LTEKDKEDILRWGVPNNIDMIALS-------------FVRKGSDLVNVRKVLGPHAKNIQLMSKVE---N----QEGVVN 249 (510)
Q Consensus 190 lt~~D~~di~~~a~~~g~d~I~~s-------------fV~sa~dv~~vr~~l~~~~~~~~IiakIE---t----~~av~n 249 (510)
++-+|..-- +.+-+.|+|.|.+. --=+.+++...-+.+...-..+.|++=++ - .++++|
T Consensus 20 ~tayD~~sA-rl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFA-KLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHH-HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Q ss_pred hHHHHh-h-cCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeE----EehhhhHhhhcCCCCChHh------HHH
Q 010449 250 FDDILR-E-TDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVV----TATQMLESMIKSPRPTRAE------ATD 317 (510)
Q Consensus 250 ldeI~~-~-~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvi----vaTqmLeSM~~~~~PtraE------v~D 317 (510)
.-.+++ . ++||-|--| ..+...|+++.++|.||+ +--|--..+-.--..-|.+ +.+
T Consensus 99 a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Q ss_pred HHHHHHcCCceEEe
Q 010449 318 VANAVLDGTDCVML 331 (510)
Q Consensus 318 v~~av~~G~D~imL 331 (510)
.......|+|+++|
T Consensus 167 a~a~~eAGA~~i~l 180 (264)
T PRK00311 167 AKALEEAGAFALVL 180 (264)
T ss_pred HHHHHHCCCCEEEE
No 492
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.10 E-value=4.8e+02 Score=25.32 Aligned_cols=122 Identities=7% Similarity=0.040 Sum_probs=71.0
Q ss_pred hccCcCCCCEEEEcCCCCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh----hcCeeEEeCCc-------cc
Q 010449 200 RWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR----ETDSFMVARGD-------LG 268 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~----~~DgI~IgrgD-------Lg 268 (510)
+.+.+.|+|+|-++.=. -.+.++|+.+. .+..|=+-.. |++++.+ -+|.+++|+-- -.
T Consensus 73 ~lA~~~~adGVHlg~~d--~~~~~~r~~~~---~~~~iG~S~H------~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~ 141 (211)
T PRK03512 73 RLAIKHQAYGVHLGQED--LETADLNAIRA---AGLRLGVSTH------DDMEIDVALAARPSYIALGHVFPTQTKQMPS 141 (211)
T ss_pred HHHHHcCCCEEEcChHh--CCHHHHHHhcC---CCCEEEEeCC------CHHHHHHHhhcCCCEEEECCccCCCCCCCCC
Confidence 34567799999887421 22355565543 2223333333 4444443 36999999631 11
Q ss_pred CCCCchhHHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEeccCCCCCCCHHHHHHH
Q 010449 269 MEIPVEKIFLAQKMMIYKCNL-VGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKI 347 (510)
Q Consensus 269 ~e~~~~~v~~~qk~ii~~~~~-~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imLs~Eta~G~yP~~~V~~ 347 (510)
-.+|++.+ + +.++. ...||+.-..+= ..++......|++++-+.+.-..-.-|.++++-
T Consensus 142 ~~~G~~~l---~----~~~~~~~~~PV~AiGGI~-------------~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~ 201 (211)
T PRK03512 142 APQGLAQL---A----RHVERLADYPTVAIGGIS-------------LERAPAVLATGVGSIAVVSAITQAADWRAATAQ 201 (211)
T ss_pred CCCCHHHH---H----HHHHhcCCCCEEEECCCC-------------HHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHH
Confidence 11233332 2 12233 368987533221 344566667899999999888877889999987
Q ss_pred HHHHH
Q 010449 348 MRRIC 352 (510)
Q Consensus 348 m~~i~ 352 (510)
+.++.
T Consensus 202 l~~~~ 206 (211)
T PRK03512 202 LLELA 206 (211)
T ss_pred HHHHH
Confidence 76654
No 493
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=32.07 E-value=57 Score=33.25 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHh-hcCeeEEeCCcccCCCCchhHHHHHHHHHHHHHHcCCCeEEeh
Q 010449 220 DLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILR-ETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT 298 (510)
Q Consensus 220 dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~-~~DgI~IgrgDLg~e~~~~~v~~~qk~ii~~~~~~gkpvivaT 298 (510)
-++.+++.+.+.|.+..|.+- +..---+|+++++. -.|.|+.+-+++ .....+.+.|+++++|++.+.
T Consensus 85 Kve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~~----------~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDSV----------RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEEC
Confidence 455566666666666665543 32222356777764 367777653322 345578899999999999764
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHH
Q 010449 299 QMLESMIKSPRPTRAEATDVANAVL 323 (510)
Q Consensus 299 qmLeSM~~~~~PtraEv~Dv~~av~ 323 (510)
-.- ...-||+-++.|+.....
T Consensus 154 Gag----~k~dp~~~~~~di~~t~~ 174 (268)
T PRK15116 154 GAG----GQIDPTQIQVVDLAKTIQ 174 (268)
T ss_pred Ccc----cCCCCCeEEEEeeecccC
Confidence 322 455899999999987533
No 494
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.98 E-value=2e+02 Score=28.64 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=23.7
Q ss_pred hccCcCCCCEEEEcCCC---------CHHHHHHHHHHhccC
Q 010449 200 RWGVPNNIDMIALSFVR---------KGSDLVNVRKVLGPH 231 (510)
Q Consensus 200 ~~a~~~g~d~I~~sfV~---------sa~dv~~vr~~l~~~ 231 (510)
+++.+.|+|+|=+++-. +.+++.++++.+.+.
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 77889999998665321 457888888887765
No 495
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=31.93 E-value=1.3e+02 Score=31.87 Aligned_cols=94 Identities=21% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHhccCcCCCCEEEEcCC---------CCHHHHHHHHHHhccCCCCceEEEEecCHHHHhchHHHHhh----cCeeE
Q 010449 195 KEDILRWGVPNNIDMIALSFV---------RKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRE----TDSFM 261 (510)
Q Consensus 195 ~~di~~~a~~~g~d~I~~sfV---------~sa~dv~~vr~~l~~~~~~~~IiakIEt~~av~nldeI~~~----~DgI~ 261 (510)
.++. +.+.+.|+|+|.+|.- .+.+-+.++++.+.+.+.++.||+- -||.|=.+|+++ +|++.
T Consensus 224 ~~dA-~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 224 VEDA-VLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred HHHH-HHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 3455 5678999999999862 3344456666655444445666653 566666666665 79999
Q ss_pred EeCCcccCCC--Cch----hHHHHHHHHHHHHHHcCCC
Q 010449 262 VARGDLGMEI--PVE----KIFLAQKMMIYKCNLVGKP 293 (510)
Q Consensus 262 IgrgDLg~e~--~~~----~v~~~qk~ii~~~~~~gkp 293 (510)
|||.=|-.-. |.+ .+..+++++-......|..
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987665332 332 3344555666666666654
No 496
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=31.85 E-value=41 Score=38.01 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCCcEEEEecCC-CCeeEeeecCCCCcEEecCCCE
Q 010449 34 SVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTK-GPEIRTGFLKDGKPIQLKEGQE 108 (510)
Q Consensus 34 ~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~~v~i~~Dl~-Gp~iR~g~~~~~~~i~l~~G~~ 108 (510)
+.+++++|.++|.++.|+-.- +. +..+.+.+||+.....|.++.++.|+. -|++-.--.+.-..+.+.+|+.
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~--~~-~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~ 115 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQ--GV-REAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNY 115 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCC--CH-HHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcC
Confidence 588999999999999997443 22 234678888888777899999999987 4444322222222355556554
No 497
>PRK15108 biotin synthase; Provisional
Probab=31.83 E-value=1.2e+02 Score=32.00 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=32.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCC--------CHHHHHHHHHHHHHH
Q 010449 22 TKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHG--------THEYQQETLNNLRAA 71 (510)
Q Consensus 22 tkIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~--------~~~~~~~~i~~ir~~ 71 (510)
..+++|+|+- +.+.+++|.++|++.+-+|+--. +...+.+.++.++.+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a 180 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV 180 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHH
Confidence 4678899965 49999999999999776655320 112344556666665
No 498
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=31.71 E-value=2.5e+02 Score=26.92 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChHhHHHHHHHHHcCCceEEe
Q 010449 278 LAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVML 331 (510)
Q Consensus 278 ~~qk~ii~~~~~~gkpvivaTqmLeSM~~~~~PtraEv~Dv~~av~~G~D~imL 331 (510)
.+....++.++++|+++.+-|- -+.+ ++..++..|+|+|+-
T Consensus 177 ~~~~~~v~~~~~~G~~v~~wtv----------n~~~---~~~~~~~~Gvd~i~T 217 (220)
T cd08579 177 TLNKEFIRQAHQNGKKVYVWTV----------NDPD---DMQRYLAMGVDGIIT 217 (220)
T ss_pred hcCHHHHHHHHHCCCEEEEEcC----------CCHH---HHHHHHHcCCCEEeC
Confidence 3567899999999999998761 1223 346677889999863
No 499
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=31.48 E-value=1.3e+02 Score=30.93 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=40.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHHHHHHHHhcCC
Q 010449 23 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQI 77 (510)
Q Consensus 23 kIi~TiGp~~~~~~~l~~li~~G~~~~RiN~sh~~~~~~~~~i~~ir~~~~~~~~ 77 (510)
.+..-+ .-+.+.|.+++.+++|.+..=++-||-+.++..+.-+.+.+.+...|.
T Consensus 74 PValHL-DHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv 127 (282)
T TIGR01858 74 PLALHL-DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDC 127 (282)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344444 334579999999999999999999999998876666666666665553
No 500
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=31.40 E-value=1.3e+02 Score=33.71 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcc-------CCCCceEEEEecCHHHHhchHHHHhhc-C---eeEEeCCcccCCC---
Q 010449 206 NIDMIALSFVRKGSDLVNVRKVLGP-------HAKNIQLMSKVENQEGVVNFDDILRET-D---SFMVARGDLGMEI--- 271 (510)
Q Consensus 206 g~d~I~~sfV~sa~dv~~vr~~l~~-------~~~~~~IiakIEt~~av~nldeI~~~~-D---gI~IgrgDLg~e~--- 271 (510)
|--|+.+|+.++++++.-.-+.+.. .-.-+++-.+||+..+.-|+++|+... | |+=-||=|..-+.
T Consensus 218 ~g~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~rer~v~lN~GrwDyigs~Ik~ 297 (545)
T COG2225 218 GGPYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNLDEILYALRDRVVGLNTGRWDYIGSEIKT 297 (545)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhHHHHHHHHHhhhccccccchhhhhhHHHH
Confidence 3468999999999999877665432 223678999999999999999999864 3 3333444422211
Q ss_pred ---------------CchhHHHHHHHHHHHHHHcCCCeEEehhh
Q 010449 272 ---------------PVEKIFLAQKMMIYKCNLVGKPVVTATQM 300 (510)
Q Consensus 272 ---------------~~~~v~~~qk~ii~~~~~~gkpvivaTqm 300 (510)
..+-+-..++..+..|.++|-+..--.|.
T Consensus 298 ~~~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa 341 (545)
T COG2225 298 LMEDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMAA 341 (545)
T ss_pred hhhhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccchh
Confidence 11356678899999999999955333333
Done!