Query 010450
Match_columns 510
No_of_seqs 149 out of 239
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 43.8 42 0.0014 25.9 5.2 37 11-48 8-44 (54)
2 2l8s_A Integrin alpha-1; trans 32.8 19 0.00066 27.9 1.8 44 11-56 5-48 (54)
3 2k1a_A Integrin alpha-IIB; sin 32.6 41 0.0014 24.7 3.4 35 11-46 6-40 (42)
4 1rh4_A Right-handed coiled coi 13.9 96 0.0033 21.5 2.0 16 47-62 18-33 (35)
5 1zke_A Hypothetical protein HP 13.7 28 0.00097 28.9 -0.8 19 48-66 64-82 (83)
6 2uwj_E Type III export protein 13.5 70 0.0024 26.0 1.4 33 32-64 8-40 (70)
7 4h63_Q Mediator of RNA polymer 11.7 1.5E+02 0.0051 31.6 3.7 27 47-73 28-55 (469)
8 2jwa_A Receptor tyrosine-prote 11.6 1.8E+02 0.0062 21.5 3.0 11 39-49 31-41 (44)
9 4h62_K Mediator of RNA polymer 10.5 1.4E+02 0.0047 21.3 1.9 22 46-67 7-28 (40)
10 3sok_A Fimbrial protein; pilus 10.4 3.7E+02 0.013 23.4 5.4 41 22-62 7-47 (151)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.79 E-value=42 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=22.3
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010450 11 EYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQ 48 (510)
Q Consensus 11 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkkk~k 48 (510)
+..|.|.+.+-...-+++=.++=.++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 468999755444333333355566778887 6666554
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.82 E-value=19 Score=27.89 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=22.8
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 010450 11 EYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQ 56 (510)
Q Consensus 11 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkkk~kkaL~eALe 56 (510)
+..|.|.+.+-...-+++=.++=.++-++| +|||++ ++..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~-~~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPL-KKKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCC-SCCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC-cchhhHHh
Confidence 468999644333322333344556777777 665554 44444444
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=32.56 E-value=41 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=19.5
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010450 11 EYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNK 46 (510)
Q Consensus 11 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkkk 46 (510)
+..|.|.+.+-...-+++=.++=.++.++| +|||+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~ 40 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRN 40 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCC
Confidence 468999654433333333345556677777 45443
No 4
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=13.92 E-value=96 Score=21.52 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.8
Q ss_pred CchHHHHHHHHHHHHH
Q 010450 47 KQKSLFEALQKVKEEL 62 (510)
Q Consensus 47 ~kkaL~eALeKiK~EL 62 (510)
-|-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567888999999886
No 5
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=13.73 E-value=28 Score=28.86 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 010450 48 QKSLFEALQKVKEELMLLG 66 (510)
Q Consensus 48 kkaL~eALeKiK~ELMLLG 66 (510)
=|...+||+|+|.|+...|
T Consensus 64 LKe~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 64 LKELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 4678899999999986544
No 6
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=13.47 E-value=70 Score=25.98 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 010450 32 AERLLHYLGRYLKNKKQKSLFEALQKVKEELML 64 (510)
Q Consensus 32 ~Er~lH~lgk~lkkk~kkaL~eALeKiK~ELML 64 (510)
+|..|+-.+.-..++=+--|+.||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555544444455566899999999999985
No 7
>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=11.75 E-value=1.5e+02 Score=31.56 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 010450 47 KQKSLFEALQKVKEELML-LGFISLLLT 73 (510)
Q Consensus 47 ~kkaL~eALeKiK~ELML-LGFISLLLt 73 (510)
.|+.|.+-++-...|+|+ |=||||||.
T Consensus 28 ~R~Eml~~i~~A~nE~slaLDfvSLLLS 55 (469)
T 4h63_Q 28 YKKELIEQIMIAQTECSLALDMTSLLLS 55 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366899999999999998 999999997
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.60 E-value=1.8e+02 Score=21.52 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=6.5
Q ss_pred HHHHHhhcCch
Q 010450 39 LGRYLKNKKQK 49 (510)
Q Consensus 39 lgk~lkkk~kk 49 (510)
++=|++||+++
T Consensus 31 ~~~~~RRR~~~ 41 (44)
T 2jwa_A 31 FGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHCSC
T ss_pred HHhheehhhhh
Confidence 34577776654
No 9
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=10.48 E-value=1.4e+02 Score=21.28 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 010450 46 KKQKSLFEALQKVKEELMLLGF 67 (510)
Q Consensus 46 k~kkaL~eALeKiK~ELMLLGF 67 (510)
-+||+|-.--||+.|.|-||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 3688999999999999887643
No 10
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=10.45 E-value=3.7e+02 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 010450 22 CTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEEL 62 (510)
Q Consensus 22 c~v~v~iSl~~Er~lH~lgk~lkkk~kkaL~eALeKiK~EL 62 (510)
..|+++|+|+.--.+-.+..+.++.+++.....+..++..+
T Consensus 7 lvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777888888887777666666666555543
Done!