Query 010450
Match_columns 510
No_of_seqs 149 out of 239
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 25.2 16 0.0012 25.9 1.9 18 370-387 29-46 (51)
2 d1zkea1 a.30.6.1 (A:1-79) Hypo 11.1 37 0.0027 26.0 1.0 16 48-63 62-77 (79)
3 d1xrda1 f.3.1.1 (A:1-52) Light 10.6 58 0.0042 23.2 1.9 16 159-174 14-30 (52)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.2 28 0.002 23.0 -0.3 12 284-295 3-14 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 9.0 29 0.0021 23.1 -0.3 12 284-295 4-15 (36)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 8.8 2.2E+02 0.016 23.3 5.5 25 16-40 156-180 (319)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 8.8 2.1E+02 0.015 21.3 5.0 38 22-59 7-44 (158)
8 d1iwga8 f.35.1.1 (A:513-566,A: 7.9 2.1E+02 0.015 24.4 5.1 58 17-74 110-179 (222)
9 d1ep3a_ c.1.4.1 (A:) Dihydroor 7.5 1.5E+02 0.011 25.9 4.0 31 30-60 278-308 (311)
10 d1q1ha_ a.4.5.41 (A:) Transcri 6.5 36 0.0026 26.7 -0.9 7 311-317 74-80 (88)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.22 E-value=16 Score=25.87 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhHHH
Q 010450 370 QIVLFLIHFILFQNSFEI 387 (510)
Q Consensus 370 ~llL~LIhfiLFQNAFel 387 (510)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 578999999999999976
No 2
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=11.11 E-value=37 Score=26.01 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHH
Q 010450 48 QKSLFEALQKVKEELM 63 (510)
Q Consensus 48 kkaL~eALeKiK~ELM 63 (510)
=|+..+||+|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678999999999974
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=10.56 E-value=58 Score=23.24 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHH-HH
Q 010450 159 LHHLHIFIFVLAIV-HV 174 (510)
Q Consensus 159 LHQLHIFIFvLAv~-HV 174 (510)
+--+|.|+|+||++ |.
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33478999999964 54
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.16 E-value=28 Score=23.01 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.3
Q ss_pred hhhcccccchhh
Q 010450 284 EDDFKRVVGISW 295 (510)
Q Consensus 284 E~DFk~VVGIS~ 295 (510)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.00 E-value=29 Score=23.09 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=9.6
Q ss_pred hhhcccccchhh
Q 010450 284 EDDFKRVVGISW 295 (510)
Q Consensus 284 E~DFk~VVGIS~ 295 (510)
|+||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 678888888874
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.78 E-value=2.2e+02 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 010450 16 WVVAAVCTVIVAISLGAERLLHYLG 40 (510)
Q Consensus 16 WaVA~Vc~v~v~iSl~~Er~lH~lg 40 (510)
|.++.++.+.+.+.+++-....+-.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHH
Confidence 6667777777777666655444433
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.76 E-value=2.1e+02 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHH
Q 010450 22 CTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVK 59 (510)
Q Consensus 22 c~v~v~iSl~~Er~lH~lgk~lkkk~kkaL~eALeKiK 59 (510)
..|+++|+|+.==++=.+..+.++.+.+.....+.-++
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i~ 44 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQK 44 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777766555444444433
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.95 E-value=2.1e+02 Score=24.43 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchHHHHHHHHHHHHH----------HHHHHHHHHHHh
Q 010450 17 VVAAVCTVIVAISLGAERLLHYLGRYLKN--KKQKSLFEALQKVKEEL----------MLLGFISLLLTV 74 (510)
Q Consensus 17 aVA~Vc~v~v~iSl~~Er~lH~lgk~lkk--k~kkaL~eALeKiK~EL----------MLLGFISLLLtv 74 (510)
.+.+.....+++++.++..+|.+..+.++ ++.+...||..+--+|- +.+||++|++.-
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~ 179 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 179 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcc
Confidence 34556667788999999999999988653 33345555554444443 478999998753
No 9
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=7.50 E-value=1.5e+02 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Q 010450 30 LGAERLLHYLGRYLKNKKQKSLFEALQKVKE 60 (510)
Q Consensus 30 l~~Er~lH~lgk~lkkk~kkaL~eALeKiK~ 60 (510)
.++++++..|.+|+++++=+.+-|...++|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4689999999999999988999999999986
No 10
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.47 E-value=36 Score=26.74 Aligned_cols=7 Identities=43% Similarity=1.891 Sum_probs=4.5
Q ss_pred cchhhHh
Q 010450 311 EWHTYFW 317 (510)
Q Consensus 311 Gw~~yfW 317 (510)
||++|+|
T Consensus 74 gw~~Y~W 80 (88)
T d1q1ha_ 74 GWFIYYW 80 (88)
T ss_dssp CCCEEEE
T ss_pred CcEEEEE
Confidence 6666666
Done!