Query 010452
Match_columns 510
No_of_seqs 146 out of 281
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 00:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1476 Beta-1,3-glucuronyltra 100.0 5.1E-92 1.1E-96 704.4 19.4 274 111-455 43-324 (330)
2 cd00218 GlcAT-I Beta1,3-glucur 100.0 4.8E-85 1E-89 632.0 19.5 217 160-423 1-223 (223)
3 PLN02458 transferase, transfer 100.0 1.2E-79 2.6E-84 619.1 24.2 230 153-424 105-341 (346)
4 PF03360 Glyco_transf_43: Glyc 100.0 1.3E-72 2.8E-77 540.9 9.5 198 181-423 1-207 (207)
5 PF00535 Glycos_transf_2: Glyc 97.7 5.7E-05 1.2E-09 64.1 5.8 93 164-273 2-98 (169)
6 cd04184 GT2_RfbC_Mx_like Myxoc 96.4 0.039 8.4E-07 49.8 10.8 100 160-275 1-105 (202)
7 cd06421 CESA_CelA_like CESA_Ce 96.0 0.052 1.1E-06 50.0 9.6 101 160-275 1-106 (234)
8 cd04185 GT_2_like_b Subfamily 95.8 0.067 1.5E-06 48.7 9.3 99 164-276 1-102 (202)
9 PRK10018 putative glycosyl tra 95.6 0.14 3E-06 51.7 11.8 101 158-273 3-105 (279)
10 cd02522 GT_2_like_a GT_2_like_ 95.6 0.065 1.4E-06 49.1 8.6 92 162-274 1-93 (221)
11 PLN02726 dolichyl-phosphate be 95.6 0.13 2.8E-06 49.2 10.7 104 158-275 7-115 (243)
12 cd04195 GT2_AmsE_like GT2_AmsE 95.3 0.12 2.5E-06 46.8 9.2 97 164-274 2-101 (201)
13 PRK10063 putative glycosyl tra 95.1 0.16 3.4E-06 49.9 9.9 100 160-274 1-103 (248)
14 cd02511 Beta4Glucosyltransfera 95.0 0.085 1.8E-06 50.2 7.5 94 162-277 2-95 (229)
15 cd06433 GT_2_WfgS_like WfgS an 94.9 0.14 3.1E-06 45.2 8.3 92 164-273 2-95 (202)
16 cd04196 GT_2_like_d Subfamily 94.9 0.14 3.1E-06 46.2 8.4 98 164-277 2-103 (214)
17 cd06423 CESA_like CESA_like is 94.9 0.16 3.5E-06 42.7 8.2 94 164-274 1-99 (180)
18 cd06435 CESA_NdvC_like NdvC_li 94.5 0.27 5.8E-06 45.9 9.3 99 164-274 2-105 (236)
19 COG0463 WcaA Glycosyltransfera 94.3 0.29 6.3E-06 40.1 8.1 98 159-273 2-102 (291)
20 cd06436 GlcNAc-1-P_transferase 94.2 0.29 6.2E-06 45.2 8.8 101 164-276 1-112 (191)
21 cd04192 GT_2_like_e Subfamily 94.1 0.33 7.1E-06 44.3 9.0 98 164-276 1-105 (229)
22 cd04186 GT_2_like_c Subfamily 94.1 0.32 6.9E-06 41.8 8.4 96 164-276 1-97 (166)
23 cd06442 DPM1_like DPM1_like re 93.7 0.17 3.7E-06 46.5 6.3 95 164-276 1-101 (224)
24 cd04187 DPM1_like_bac Bacteria 93.7 0.5 1.1E-05 42.4 9.2 100 164-276 1-103 (181)
25 PRK10073 putative glycosyl tra 93.5 0.74 1.6E-05 47.2 11.2 102 158-276 4-108 (328)
26 cd00761 Glyco_tranf_GTA_type G 93.3 0.82 1.8E-05 37.5 9.1 95 164-274 1-98 (156)
27 cd06427 CESA_like_2 CESA_like_ 93.2 0.92 2E-05 43.1 10.6 101 160-274 1-105 (241)
28 cd02525 Succinoglycan_BP_ExoA 93.1 0.6 1.3E-05 43.2 9.0 97 162-275 2-103 (249)
29 TIGR03469 HonB hopene-associat 93.1 0.56 1.2E-05 48.8 9.7 109 158-274 38-154 (384)
30 cd06439 CESA_like_1 CESA_like_ 92.9 1.2 2.6E-05 42.0 10.7 105 154-274 23-130 (251)
31 cd06434 GT2_HAS Hyaluronan syn 92.8 1 2.2E-05 41.8 10.0 95 162-275 2-99 (235)
32 cd02526 GT2_RfbF_like RfbF is 92.5 0.5 1.1E-05 43.8 7.6 94 164-274 1-96 (237)
33 cd06438 EpsO_like EpsO protein 92.5 1.4 3E-05 40.0 10.3 100 164-275 1-103 (183)
34 cd06913 beta3GnTL1_like Beta 1 92.0 0.36 7.9E-06 44.8 6.1 96 164-273 1-104 (219)
35 cd06420 GT2_Chondriotin_Pol_N 91.3 1.9 4E-05 38.3 9.5 98 164-276 1-102 (182)
36 cd06437 CESA_CaSu_A2 Cellulose 91.0 2 4.3E-05 40.3 9.9 102 160-276 1-110 (232)
37 PRK13915 putative glucosyl-3-p 90.7 1.9 4.2E-05 44.1 10.3 107 158-274 29-137 (306)
38 TIGR03111 glyc2_xrt_Gpos1 puta 90.6 1.2 2.7E-05 47.2 9.0 101 156-275 45-153 (439)
39 PF13641 Glyco_tranf_2_3: Glyc 90.1 0.4 8.6E-06 44.4 4.3 101 160-275 1-108 (228)
40 TIGR01556 rhamnosyltran L-rham 90.0 1.9 4E-05 42.1 9.0 91 168-274 2-94 (281)
41 PRK10714 undecaprenyl phosphat 89.9 4.2 9.1E-05 41.8 11.9 104 158-274 4-111 (325)
42 cd04188 DPG_synthase DPG_synth 89.2 2.8 6.2E-05 38.7 9.2 101 164-277 1-106 (211)
43 cd04179 DPM_DPG-synthase_like 87.6 3.1 6.7E-05 36.9 8.0 96 164-276 1-102 (185)
44 PRK11204 N-glycosyltransferase 86.2 7.9 0.00017 40.2 11.3 100 158-275 52-156 (420)
45 cd02510 pp-GalNAc-T pp-GalNAc- 84.8 6.9 0.00015 38.7 9.7 96 164-274 2-104 (299)
46 PF10111 Glyco_tranf_2_2: Glyc 84.6 6.4 0.00014 39.2 9.4 99 164-276 2-111 (281)
47 PTZ00260 dolichyl-phosphate be 84.5 13 0.00029 38.4 11.9 105 157-274 67-183 (333)
48 TIGR03030 CelA cellulose synth 75.8 17 0.00036 41.7 10.1 101 157-273 128-248 (713)
49 cd02520 Glucosylceramide_synth 75.4 7 0.00015 36.0 5.8 102 160-276 1-109 (196)
50 PRK14583 hmsR N-glycosyltransf 72.8 19 0.00042 38.3 9.1 97 158-274 73-176 (444)
51 COG1216 Predicted glycosyltran 62.3 30 0.00066 34.8 7.6 102 159-276 2-107 (305)
52 PRK05799 coproporphyrinogen II 58.8 1.6E+02 0.0034 30.8 12.4 110 142-254 35-150 (374)
53 PRK11498 bcsA cellulose syntha 45.9 1.5E+02 0.0033 35.4 10.8 99 158-273 258-359 (852)
54 PRK00523 hypothetical protein; 44.9 24 0.00053 30.1 3.1 27 36-62 3-29 (72)
55 COG5494 Predicted thioredoxin/ 43.8 27 0.00058 35.7 3.7 40 117-156 210-257 (265)
56 PF05194 UreE_C: UreE urease a 40.0 80 0.0017 26.8 5.6 54 160-223 2-61 (87)
57 cd00571 UreE UreE urease acces 39.4 1.1E+02 0.0023 28.3 6.7 54 159-222 75-134 (136)
58 PRK01844 hypothetical protein; 38.5 33 0.00071 29.4 2.9 26 37-62 3-28 (72)
59 PF14263 DUF4354: Domain of un 36.8 17 0.00036 33.8 1.1 18 253-270 100-118 (124)
60 PRK05628 coproporphyrinogen II 36.3 1.7E+02 0.0038 30.6 8.6 110 142-254 38-159 (375)
61 TIGR03472 HpnI hopanoid biosyn 34.8 2.5E+02 0.0053 29.3 9.3 107 156-275 37-148 (373)
62 PRK10187 trehalose-6-phosphate 34.6 44 0.00095 33.5 3.7 34 243-278 177-213 (266)
63 COG3763 Uncharacterized protei 34.4 42 0.0009 28.7 2.9 26 38-63 4-29 (71)
64 PF14773 VIGSSK: Helicase-asso 32.8 28 0.0006 28.9 1.6 21 202-222 24-44 (61)
65 PF15050 SCIMP: SCIMP protein 32.0 37 0.0008 31.8 2.5 19 38-56 7-25 (133)
66 PF06858 NOG1: Nucleolar GTP-b 31.9 29 0.00063 28.4 1.6 34 240-277 5-44 (58)
67 TIGR02326 transamin_PhnW 2-ami 30.4 4.7E+02 0.01 26.6 10.3 89 124-223 22-110 (363)
68 cd02514 GT13_GLCNAC-TI GT13_GL 29.7 3.8E+02 0.0082 28.6 9.8 109 164-277 4-121 (334)
69 TIGR03471 HpnJ hopanoid biosyn 27.7 6E+02 0.013 27.5 11.1 90 159-254 246-338 (472)
70 PRK08599 coproporphyrinogen II 27.0 6.5E+02 0.014 26.4 10.9 97 157-255 50-152 (377)
71 PRK08446 coproporphyrinogen II 25.4 4.1E+02 0.009 27.8 9.1 93 158-254 51-149 (350)
72 TIGR02026 BchE magnesium-proto 25.4 3.9E+02 0.0084 29.4 9.2 89 160-254 241-338 (497)
73 KOG2978 Dolichol-phosphate man 22.9 6.4E+02 0.014 25.9 9.3 99 164-276 7-111 (238)
74 PRK07094 biotin synthase; Prov 22.8 7.3E+02 0.016 25.3 10.1 87 160-253 88-179 (323)
75 PF13365 Trypsin_2: Trypsin-li 21.6 50 0.0011 27.3 1.3 12 317-328 108-119 (120)
76 KOG0348 ATP-dependent RNA heli 21.4 72 0.0016 36.7 2.7 68 141-215 194-265 (708)
77 PF05679 CHGN: Chondroitin N-a 21.3 5.8E+02 0.013 28.4 9.6 119 157-288 244-379 (499)
78 PF00583 Acetyltransf_1: Acety 21.2 1.5E+02 0.0033 22.8 3.8 40 235-274 41-80 (83)
79 PRK07379 coproporphyrinogen II 20.3 1.1E+03 0.023 25.3 12.0 112 142-255 49-167 (400)
No 1
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-92 Score=704.40 Aligned_cols=274 Identities=40% Similarity=0.598 Sum_probs=245.3
Q ss_pred CCCCceeecccccccCCCCCCChHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEcccCCcchhhHHHHhhhhhccCCCC
Q 010452 111 NSNSRVVVGRHGIRIRPWPHPNPTEVMKAHKIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY 190 (510)
Q Consensus 111 ~~~s~v~vgrh~i~irpwphp~p~e~~~ah~i~ervQ~eqr~~~g~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~ 190 (510)
..++++.+|||||++|+|+|+++.++++++.+..+.|.|+..+ .|+||||||||.|++|++|||||||||+|||
T Consensus 43 ~~~~~~~~~~~gir~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~iivVTPTY~R~~q~~~LtRlanTL~~V~- 116 (330)
T KOG1476|consen 43 TYSSPRVVGRHGIRIRPWATAPAIAVEKVAETRSRTQKEPEMQ-----LPTIIVVTPTYVRPVQAAELTRLANTLRLVP- 116 (330)
T ss_pred cccceeeeccccccccccCCCchhhhhhhccccccCCcccccC-----CccEEEEcccccchhHHHHHHHHHHHHhhcC-
Confidence 6688999999999999999999999999999999999999765 8999999999999999999999999999999
Q ss_pred CeEEEEEeCC-CCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHHHHHHHHHH-----hccCCeEEEEecCCC
Q 010452 191 DLVWIVVEAG-GVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVR-----EEKLDGIVMFADDSN 264 (510)
Q Consensus 191 ~LhWIVVEd~-~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR-----~~~~~GVVYFADDDN 264 (510)
|||||||||+ +.+++|+.+|+++||+|+||+++++++ +..+++. .|||+||+||| +|+++||||||||||
T Consensus 117 nLhWIVVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~--~~~~rg~--~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN 192 (330)
T KOG1476|consen 117 NLHWIVVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMG--YKARRGW--EQRNMALRWIRSRILRHHKLEGVVYFADDDN 192 (330)
T ss_pred CeeEEEEecCCCCCHHHHHHHHHcCCceEEEeccCCCC--Cccccch--hHHHHHHHHHHHhcccccccceEEEEccCCc
Confidence 9999999999 579999999999999999999997765 3444333 59999999999 679999999999999
Q ss_pred ccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhhcCCCCCccceecceecCCCcEEEEEecCCCccccccccc
Q 010452 265 MHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATY 344 (510)
Q Consensus 265 tYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~e~~~~~~~~vEGPvcn~sGkVvGWht~~~lp~~~~sa~~ 344 (510)
+||+|||+|||+|++||+||||++ ||+ .||||+|+ +|||+|||+.|.
T Consensus 193 ~YdleLF~eiR~v~~~gvWpVg~v---gg~-------------------~vE~P~v~-~~kvvg~~~~w~---------- 239 (330)
T KOG1476|consen 193 TYDLELFEEIRNVKKFGVWPVGLV---GGA-------------------RVEGPVVN-NGKVVGWHTRWE---------- 239 (330)
T ss_pred chhHHHHHHHhccceeeeEeeeec---CCe-------------------eeecceec-cCeeEEEEeccc----------
Confidence 999999999999999999999998 764 79999999 889999999884
Q ss_pred ccccccCCCccccccccchhhhcccccccCCCcccccccccCCcccccc--cccccCCCCcccccCCCCCEEEEEecccc
Q 010452 345 IDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIES--PLSLLKDQSMVEPLGNCGRQVIVWWLRVE 422 (510)
Q Consensus 345 ~~drap~rpfpIDMAGFA~NsrLLw~~~~~rp~~i~dld~~~~~~~iES--~LslL~D~s~lEPla~cc~kVLVWHtRtE 422 (510)
+.|||+|||||||||+++||+++. .|+++....++ ++.|+ +.+++.|.++|||+|+||++|||||||||
T Consensus 240 -----~~r~f~vdmaGFAvNl~lll~~~~---a~f~~~~~~~~-G~~E~~~l~~l~~d~~~iEp~~~~c~kILvWhtrte 310 (330)
T KOG1476|consen 240 -----PERPFAVDMAGFAVNLKLLLDPSN---AVFKPLCPRGE-GYQETCLLEQLGLDLSDIEPLAYECTKILVWHTRTE 310 (330)
T ss_pred -----cCCCCccchhhheehhhhhccCcc---ccccccCcCCC-CCcchhHHHHhcCCHHHccccccccceEEEEEeccc
Confidence 889999999999999999999864 34454444443 34443 45777999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCceeeecCCCCCCCCCCC
Q 010452 423 ARSDSKFPPGWIIDPPLEITVPSKRTPWPDAPP 455 (510)
Q Consensus 423 ~p~d~kyP~~W~id~~Lev~vp~k~t~~p~~~~ 455 (510)
+|.+ +|++|+|...
T Consensus 311 ~~~~-------------------~~~~~~~~~~ 324 (330)
T KOG1476|consen 311 KPAD-------------------KRLPNEDKFG 324 (330)
T ss_pred Cccc-------------------ccCcCccccC
Confidence 9965 8999998865
No 2
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=4.8e-85 Score=631.98 Aligned_cols=217 Identities=39% Similarity=0.630 Sum_probs=191.5
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhH
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~-~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~ 238 (510)
|+||||||||+|++|+|||||||||||||| |||||||||++ +|++|++||++|||+|+||+++++....|..+++ .
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg--~ 77 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRG--V 77 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCccc--H
Confidence 689999999999999999999999999999 99999999998 8999999999999999999998663234444444 3
Q ss_pred HHHHHHHHHHHhc---cCCeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhhcCCCCCccce
Q 010452 239 KMRLRALRIVREE---KLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPV 315 (510)
Q Consensus 239 ~qRN~AL~~IR~~---~~~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~e~~~~~~~~v 315 (510)
.|||+||+|||+| +++||||||||||+||++||||||+||+||+||||++ ||+ .|
T Consensus 78 ~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglv---g~~-------------------~v 135 (223)
T cd00218 78 EQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLV---GGL-------------------RV 135 (223)
T ss_pred HHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeee---cCc-------------------ee
Confidence 6999999999999 9999999999999999999999999999999999999 553 79
Q ss_pred ecceecCCCcEEEEEecCCCcccccccccccccccCCCccccccccchhhhcccccccCCCcccccccccCCcccccc--
Q 010452 316 QGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIES-- 393 (510)
Q Consensus 316 EGPvcn~sGkVvGWht~~~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~~rp~~i~dld~~~~~~~iES-- 393 (510)
|||+|+ +|||+|||+.|+ +.|||||||||||||+++||+++++.+. .+ .++ ++.|+
T Consensus 136 egP~c~-~gkV~gw~~~w~---------------~~R~f~idmAGFA~n~~ll~~~~~~~~~----~~-~~~-g~~es~f 193 (223)
T cd00218 136 EGPVCE-NGKVVGWHTAWK---------------PERPFPIDMAGFAFNSKLLWDPPRAVFP----YS-AKR-GYQESSF 193 (223)
T ss_pred eccEee-CCeEeEEecCCC---------------CCCCCcceeeeEEEehhhhccCccccCC----CC-CCC-cchhHHh
Confidence 999999 789999999984 6799999999999999999998765433 22 222 23343
Q ss_pred cccccCCCCcccccCCCCCEEEEEeccccC
Q 010452 394 PLSLLKDQSMVEPLGNCGRQVIVWWLRVEA 423 (510)
Q Consensus 394 ~LslL~D~s~lEPla~cc~kVLVWHtRtE~ 423 (510)
+.+|+.|+++|||+|+||++|||||||||+
T Consensus 194 l~~L~~~~~~~Epl~~~c~~VlvWhtrte~ 223 (223)
T cd00218 194 LEQLVLDRKELEPLANNCSKVLVWHTRTEK 223 (223)
T ss_pred HHHHcccHHhcccccCCCCEEEEEeeecCC
Confidence 557888999999999999999999999985
No 3
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-79 Score=619.09 Aligned_cols=230 Identities=27% Similarity=0.492 Sum_probs=198.7
Q ss_pred cCCCCCCcEEEEEcccCC-cchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcC
Q 010452 153 HFGFKNPRTLIVVTPTYV-RTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWG 231 (510)
Q Consensus 153 ~~g~~~~~~IivVTPTY~-R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~ 231 (510)
..++.++++||||||||. |++|+||||||||||+|||+|||||||||++.|++|++||++|||+|+||+++++++.
T Consensus 105 ~~~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrsGl~y~HL~~k~~~~~--- 181 (346)
T PLN02458 105 EPKLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKTGIMYRHLVFKENFTD--- 181 (346)
T ss_pred ccCCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHcCCceEEeccCCCCCC---
Confidence 567889999999999998 7999999999999999999899999999999999999999999999999999987752
Q ss_pred CcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhhcCCCCC
Q 010452 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENT 311 (510)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~e~~~~~ 311 (510)
.......|||+||+|||+|+++||||||||||+||++||||||+||+||+||||++++++ .
T Consensus 182 -~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~------------------~ 242 (346)
T PLN02458 182 -PEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANR------------------N 242 (346)
T ss_pred -ccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeeccc------------------c
Confidence 223344799999999999999999999999999999999999999999999999995432 2
Q ss_pred ccceecceecCCCcEEEEEecCCCcccccccccccccccCCCccccccccchhhhccccccc-CCCcccccccccCCccc
Q 010452 312 AMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAK-DKPEWVNDLDLLDGLED 390 (510)
Q Consensus 312 ~~~vEGPvcn~sGkVvGWht~~~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~-~rp~~i~dld~~~~~~~ 390 (510)
++.||||+|++ |||+|||+.|.. ..+.|+|||||||||||++||||+.+ .+|.++++ ++
T Consensus 243 ~~~vEGPvc~~-gkVvGWht~w~~------------~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~~~~-------~~ 302 (346)
T PLN02458 243 KVIIEGPVCDS-SQVIGWHLKKMN------------NETETRPPIHISSFAFNSSILWDPERWGRPSSVQG-------TS 302 (346)
T ss_pred cceeECceecC-CeEeEEeccccc------------cCCCCCCCcceeeeeeehhhhcChhhhCCCCCCCc-------cc
Confidence 37899999995 799999998731 12678999999999999999999964 56666543 23
Q ss_pred ccc--cc-cc-cCCCCcccccC-CCCCEEEEEeccccCC
Q 010452 391 IES--PL-SL-LKDQSMVEPLG-NCGRQVIVWWLRVEAR 424 (510)
Q Consensus 391 iES--~L-sl-L~D~s~lEPla-~cc~kVLVWHtRtE~p 424 (510)
+|| ++ ++ ++|+.++|+++ +||++|||||++++.+
T Consensus 303 qeS~~Fv~ql~~~de~q~egipa~~CskVmvWhl~~~~~ 341 (346)
T PLN02458 303 QNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRLNFPTR 341 (346)
T ss_pred hHHHHHHHHHhhccccccccCCcCCCCEEEEEEeccCCc
Confidence 333 22 44 68999999995 7899999999999875
No 4
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=1.3e-72 Score=540.88 Aligned_cols=198 Identities=38% Similarity=0.635 Sum_probs=141.1
Q ss_pred hhhhccCCCCCeEEEEEeCCCC-CHHHHHHHhhcCCceeeeecCCCCCCCcCCcch---hhHHHHHHHHHHHH---hccC
Q 010452 181 VMHSLMLVPYDLVWIVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQ---LEAKMRLRALRIVR---EEKL 253 (510)
Q Consensus 181 LahTL~lVp~~LhWIVVEd~~~-T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~---~~~~qRN~AL~~IR---~~~~ 253 (510)
||||||||| +||||||||++. +++|++||++|||+|+||+++ +|..++++.. .+..|||.||+||| ++++
T Consensus 1 La~TL~~V~-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~--~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~ 77 (207)
T PF03360_consen 1 LAHTLRHVP-PLHWIVVEDSEETTPLVARLLRRSGLPYTHLNVK--TPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRL 77 (207)
T ss_dssp HHHHHTTSS-SEEEEEEESSSS--HHHHHHHHHHTSEEEEEE------HHHH-------TSHHHHHHHHHHHHSTTTSSS
T ss_pred CchhhhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceeEEecC--CccccccccccccccHHHHHHHHHHHHhcccCCC
Confidence 799999999 899999999986 567999999999999999997 4433321111 23479999999999 8899
Q ss_pred CeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhhcCCCCCccceecceecCCCcEEEEEecC
Q 010452 254 DGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFN 333 (510)
Q Consensus 254 ~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~e~~~~~~~~vEGPvcn~sGkVvGWht~~ 333 (510)
+||||||||||+||+|||||||+||+||+||||++ || +.||||+|+. |+|+|||+.|
T Consensus 78 ~GVVyFaDDdNtYdl~LF~emR~~k~vgvWPVG~v---g~-------------------~~~EgP~~~~-~~Vvgw~~~~ 134 (207)
T PF03360_consen 78 DGVVYFADDDNTYDLRLFDEMRKTKRVGVWPVGLV---GG-------------------LRVEGPVCNN-GKVVGWHTSW 134 (207)
T ss_dssp -EEEEE--TTSEE-HHHHHHHCT-SSEEE--EEEE---TT-------------------EEEEEEEEET-TEEEEEE-SS
T ss_pred CcEEEECCCCCeeeHHHHHHHHhhhcccceeecee---cc-------------------ceeeccEEeC-CEEEEEEccc
Confidence 99999999999999999999999999999999999 65 3799999995 5999999987
Q ss_pred CCcccccccccccccccCCCccccccccchhhhcccccccCCCcccccccccCCcccccc-ccc-ccCCCCcccccCCCC
Q 010452 334 SLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIES-PLS-LLKDQSMVEPLGNCG 411 (510)
Q Consensus 334 ~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~~rp~~i~dld~~~~~~~iES-~Ls-lL~D~s~lEPla~cc 411 (510)
. |.|||||||||||||++|||+++++.+.+ +...+.++.|+ +|+ ++.|+++|||+|+||
T Consensus 135 ~---------------~~R~fpiDmAGFAvn~~ll~~~~~~~~~~----~~~~~~G~~Es~fL~~l~~~~~~lEp~a~~c 195 (207)
T PF03360_consen 135 K---------------PDRPFPIDMAGFAVNSRLLWDRPEAIFDY----SAPRGEGYQESSFLSQLVLDREDLEPLADNC 195 (207)
T ss_dssp S---------------TTSTT---GGGEEEEHHHHHHSTT----T----TSSTT-TGHHHHHHHTT---GGGEEE-HHHH
T ss_pred C---------------CCCCccccceeeeeehHHHhcCccccccc----cCCCCCCcchhHHHHHhccChhhcccccCCC
Confidence 4 78999999999999999999977665433 33332246665 555 445999999999999
Q ss_pred CEEEEEeccccC
Q 010452 412 RQVIVWWLRVEA 423 (510)
Q Consensus 412 ~kVLVWHtRtE~ 423 (510)
++||||||||||
T Consensus 196 ~~VlVWHtrtek 207 (207)
T PF03360_consen 196 SKVLVWHTRTEK 207 (207)
T ss_dssp TS--EE---B--
T ss_pred CEEEEeeeeccC
Confidence 999999999996
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.74 E-value=5.7e-05 Score=64.06 Aligned_cols=93 Identities=26% Similarity=0.402 Sum_probs=60.1
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCHHHHHHHhhc---CCceeeeecCCCCCCCcCCcchhhHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTNETASLIAKS---KLRTIHVGVDQKMPASWGGRHQLEAK 239 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~T~~va~lL~rS---GL~ytHL~~~~~~p~~~~~r~~~~~~ 239 (510)
||+|||.+.. .|.++.++|+.- ..+..+|||+|++ ++.+.++|++. +..++.+..+.++ +. ..
T Consensus 2 vvip~~n~~~---~l~~~l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~--------g~-~~ 68 (169)
T PF00535_consen 2 VVIPTYNEAE---YLERTLESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL--------GF-SA 68 (169)
T ss_dssp EEEEESS-TT---THHHHHHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS--------HH-HH
T ss_pred EEEEeeCCHH---HHHHHHHHHhhccCCCEEEEEecccc-ccccccccccccccccccccccccccc--------cc-cc
Confidence 7999999933 455555555544 2379999999998 44455555554 5666666554332 22 24
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 240 qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
.+|.|++..... +|.|.|||..+....+++
T Consensus 69 ~~n~~~~~a~~~----~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 69 ARNRGIKHAKGE----YILFLDDDDIISPDWLEE 98 (169)
T ss_dssp HHHHHHHH--SS----EEEEEETTEEE-TTHHHH
T ss_pred ccccccccccee----EEEEeCCCceEcHHHHHH
Confidence 799999887655 999999999998875555
No 6
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.40 E-value=0.039 Score=49.83 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=59.7
Q ss_pred cEEEEEcccCCcc-hhhH-HHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhh---cCCceeeeecCCCCCCCcCCcc
Q 010452 160 RTLIVVTPTYVRT-FQTL-HLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAK---SKLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 160 ~~IivVTPTY~R~-~Q~a-~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~r---SGL~ytHL~~~~~~p~~~~~r~ 234 (510)
|.|.||.|||.+. .... -|..|.+ +..+++..|||+|++..+.+..+++. ..-..+.+..+. +.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~---q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~- 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA---QTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-------NG- 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEccc-------CC-
Confidence 5688999999998 4332 2233332 22236899999999754444444442 111122221111 11
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
+. ...||.|++..+ .=.|.|.|+|..++...++++.
T Consensus 70 g~-~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 70 GI-SAATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CH-HHHHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 21 236999998753 2478899999999998887744
No 7
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.99 E-value=0.052 Score=50.02 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCCC-CC--eEEEEEeCCCCCHHHHHHHhhcCCce--eeeecCCCCCCCcCCcc
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVP-YD--LVWIVVEAGGVTNETASLIAKSKLRT--IHVGVDQKMPASWGGRH 234 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lVp-~~--LhWIVVEd~~~T~~va~lL~rSGL~y--tHL~~~~~~p~~~~~r~ 234 (510)
|.|-||.|||.+.. ..|.+.-+.|..-. ++ +..|||.|++ ++.+.+++++.+..+ ..+....+ .+
T Consensus 1 p~vsviip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~-------~~ 70 (234)
T cd06421 1 PTVDVFIPTYNEPL--EIVRKTLRAALAIDYPHDKLRVYVLDDGR-RPELRALAAELGVEYGYRYLTRPDN-------RH 70 (234)
T ss_pred CceEEEEecCCCcH--HHHHHHHHHHHhcCCCcccEEEEEEcCCC-chhHHHHHHHhhcccCceEEEeCCC-------CC
Confidence 56889999999742 12333333333322 24 7899998875 567788888766543 22222111 11
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
....++|.|++.. ..=+|+|.|+|...+.+.+++|-
T Consensus 71 -~~~~~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~ 106 (234)
T cd06421 71 -AKAGNLNNALAHT----TGDFVAILDADHVPTPDFLRRTL 106 (234)
T ss_pred -CcHHHHHHHHHhC----CCCEEEEEccccCcCccHHHHHH
Confidence 1123578999764 23489999999999988877753
No 8
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.78 E-value=0.067 Score=48.69 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=60.3
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCHHHHHHHhhcCCce--eeeecCCCCCCCcCCcchhhHHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTNETASLIAKSKLRT--IHVGVDQKMPASWGGRHQLEAKM 240 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~T~~va~lL~rSGL~y--tHL~~~~~~p~~~~~r~~~~~~q 240 (510)
||+|||.+..... ++-++|..- .++...|||+|+++ +.+.+++++.+-.+ +++..+.+. +. ...
T Consensus 1 viI~~~n~~~~l~---~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~-------g~--~~~ 67 (202)
T cd04185 1 AVVVTYNRLDLLK---ECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENL-------GG--AGG 67 (202)
T ss_pred CEEEeeCCHHHHH---HHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECcccc-------ch--hhH
Confidence 6889999875443 333333222 12567899998854 34555555554433 444333221 11 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 241 RN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+|.|+++.. +...-.|.|.|+|..++.+.++++-+
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 888888876 32233788889999999999988654
No 9
>PRK10018 putative glycosyl transferase; Provisional
Probab=95.64 E-value=0.14 Score=51.73 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCH-HHHHHHhhcCC-ceeeeecCCCCCCCcCCcch
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTN-ETASLIAKSKL-RTIHVGVDQKMPASWGGRHQ 235 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~-~va~lL~rSGL-~ytHL~~~~~~p~~~~~r~~ 235 (510)
..|.|-||+|||.+..-... -|...+.+--+++-+|||+|++.+. .+.+++++.+- ..+++..+.+ . +
T Consensus 3 ~~p~VSVIip~yN~~~~l~~--~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n-------~-G 72 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIR--AIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDIN-------S-G 72 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHH--HHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCC-------C-C
Confidence 46899999999998653221 1111222222379999999998764 45666654332 2222222211 1 2
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
. ...||.|++.. ..-+|.|.|+|..+..+.+++
T Consensus 73 ~-~~a~N~gi~~a----~g~~I~~lDaDD~~~p~~l~~ 105 (279)
T PRK10018 73 A-CAVRNQAIMLA----QGEYITGIDDDDEWTPNRLSV 105 (279)
T ss_pred H-HHHHHHHHHHc----CCCEEEEECCCCCCCccHHHH
Confidence 2 13599999753 345889999999998886655
No 10
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.63 E-value=0.065 Score=49.06 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=59.4
Q ss_pred EEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHH
Q 010452 162 LIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKM 240 (510)
Q Consensus 162 IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~q 240 (510)
|-||.|||.+.....+ |..|.+ +...++-.|||+|++ ++.+.+++++.+ ..++..+ . +. ...
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s-~d~~~~~~~~~~--~~~~~~~---------~-g~-~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGS-TDGTVAIARSAG--VVVISSP---------K-GR-ARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCC-CccHHHHHhcCC--eEEEeCC---------c-CH-HHH
Confidence 3478899999754433 334432 221368889998776 455566777633 3333221 1 11 136
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 241 RN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+|.|+...+ .-+|.|.|+|..++.+.+++|
T Consensus 64 ~n~g~~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 64 MNAGAAAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred HHHHHHhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 899997754 468999999999999999885
No 11
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=95.56 E-value=0.13 Score=49.16 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=63.9
Q ss_pred CCcEEEEEcccCCcchhhHHHH-hhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHh-hcCCceeeeec-CCCCCCCcCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLT-GVMHSLMLVPYDLVWIVVEAGGV--TNETASLIA-KSKLRTIHVGV-DQKMPASWGG 232 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LT-RLahTL~lVp~~LhWIVVEd~~~--T~~va~lL~-rSGL~ytHL~~-~~~~p~~~~~ 232 (510)
..|.|-||.|+|........+. .+.+.+...+ ++.+|||+|++. |.++++-+. ..+....++.. +.+
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n------- 78 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGK------- 78 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCC-------
Confidence 4578999999999877665443 3445555554 799999999863 333332222 22222222221 111
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
. +.. .-+|.|++..+ .-+|.|.|+|..++.+.+++|-
T Consensus 79 ~-G~~-~a~n~g~~~a~----g~~i~~lD~D~~~~~~~l~~l~ 115 (243)
T PLN02726 79 L-GLG-TAYIHGLKHAS----GDFVVIMDADLSHHPKYLPSFI 115 (243)
T ss_pred C-CHH-HHHHHHHHHcC----CCEEEEEcCCCCCCHHHHHHHH
Confidence 1 111 24788887542 3488999999999998887743
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.34 E-value=0.12 Score=46.83 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=58.6
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhc--CCceeeeecCCCCCCCcCCcchhhHHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKS--KLRTIHVGVDQKMPASWGGRHQLEAKM 240 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp-~~LhWIVVEd~~~T~~va~lL~rS--GL~ytHL~~~~~~p~~~~~r~~~~~~q 240 (510)
||.|||.+.- ...|-+..++|..-. .+.-+|||.|++.++.+.++++.. ..+.+++..+.+ . +. ...
T Consensus 2 viip~~n~~~-~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-------~-G~-~~a 71 (201)
T cd04195 2 VLMSVYIKEK-PEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-------R-GL-GKA 71 (201)
T ss_pred EEEEccccch-HHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-------c-cH-HHH
Confidence 6788988651 223444444443321 147789999998777666666542 122444433322 1 21 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 241 RN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
||.|++.- ..-.|.|.|+|..+....++.|
T Consensus 72 ~N~g~~~a----~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 72 LNEGLKHC----TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred HHHHHHhc----CCCEEEEeCCccccCcHHHHHH
Confidence 99999753 2348999999999998777663
No 13
>PRK10063 putative glycosyl transferase; Provisional
Probab=95.09 E-value=0.16 Score=49.91 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=56.3
Q ss_pred cEEEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCC--ceeeeecCCCCCCCcCCcchh
Q 010452 160 RTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKL--RTIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL--~ytHL~~~~~~p~~~~~r~~~ 236 (510)
|.|-||+|||.......+ |..|.+....-..++-+|||+|++ ++.+.+++++.+- ...++..+ +. +.
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~~~--------~~-G~ 70 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVSEP--------DN-GI 70 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEECC--------CC-CH
Confidence 468899999987543332 223332222222268999999886 4446666766432 22223211 12 22
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
. ..+|.|++.-+ .=+|.|.|+|..+....++.+
T Consensus 71 ~-~A~N~Gi~~a~----g~~v~~ld~DD~~~~~~~~~~ 103 (248)
T PRK10063 71 Y-DAMNKGIAMAQ----GRFALFLNSGDIFHQDAANFV 103 (248)
T ss_pred H-HHHHHHHHHcC----CCEEEEEeCCcccCcCHHHHH
Confidence 2 36999998642 237888886666655544333
No 14
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=94.98 E-value=0.085 Score=50.19 Aligned_cols=94 Identities=22% Similarity=0.181 Sum_probs=64.3
Q ss_pred EEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHH
Q 010452 162 LIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (510)
Q Consensus 162 IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qR 241 (510)
|-||.|||.... .|.+.-++|.... -.-|||.++++ +.|.+++++.|+...|. . + . +. ..+|
T Consensus 2 isvii~~~Ne~~---~l~~~l~sl~~~~--~eiivvD~gSt-D~t~~i~~~~~~~v~~~--~-~-------~-g~-~~~~ 63 (229)
T cd02511 2 LSVVIITKNEER---NIERCLESVKWAV--DEIIVVDSGST-DRTVEIAKEYGAKVYQR--W-W-------D-GF-GAQR 63 (229)
T ss_pred EEEEEEeCCcHH---HHHHHHHHHhccc--CEEEEEeCCCC-ccHHHHHHHcCCEEEEC--C-C-------C-Ch-HHHH
Confidence 778999999753 3444444444332 25678877653 45778888888877665 1 1 1 11 2479
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhhhhce
Q 010452 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (510)
Q Consensus 242 N~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~t 277 (510)
|.|+...+. + .|.|.|.|..++.+++++|.+.
T Consensus 64 n~~~~~a~~---d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 64 NFALELATN---D-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHHHHhCCC---C-EEEEEeCCcCcCHHHHHHHHHH
Confidence 999976432 2 8999999999999999887653
No 15
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.91 E-value=0.14 Score=45.18 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=52.8
Q ss_pred EEcccCCcchhhH-HHHhhh-hhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHH
Q 010452 164 VVTPTYVRTFQTL-HLTGVM-HSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (510)
Q Consensus 164 vVTPTY~R~~Q~a-~LTRLa-hTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qR 241 (510)
||.|||.+..... -|..|. |+. + ++..|||+|++. +.+.++|++-+-...++...++ . +. ...|
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~---~-~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~-------~-g~-~~a~ 67 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTY---P-NIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPD-------K-GI-YDAM 67 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCC---C-CceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCC-------c-CH-HHHH
Confidence 6889999873322 233443 332 3 588899998864 2344444443322222222211 1 11 2469
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 242 N~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
|.||+..+ .-+|.|.|+|..+..+-+.+
T Consensus 68 n~~~~~a~----~~~v~~ld~D~~~~~~~~~~ 95 (202)
T cd06433 68 NKGIALAT----GDIIGFLNSDDTLLPGALLA 95 (202)
T ss_pred HHHHHHcC----CCEEEEeCCCcccCchHHHH
Confidence 99998653 24788999888887665544
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.89 E-value=0.14 Score=46.18 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=54.2
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCC--CHHHH-HHHhhcCCceeeeecCCCCCCCcCCcchhhHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGV--TNETA-SLIAKSKLRTIHVGVDQKMPASWGGRHQLEAK 239 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~--T~~va-~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~ 239 (510)
||.|||.+.... .+.-+.|..- .+++-+|||+|+++ |..+. ++.++.+...+++.... .. +. ..
T Consensus 2 IvIp~yn~~~~l---~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~-------~~-G~-~~ 69 (214)
T cd04196 2 VLMATYNGEKYL---REQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGK-------NL-GV-AR 69 (214)
T ss_pred EEEEecCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCC-------Cc-cH-HH
Confidence 789999998433 3333333221 12699999999864 33332 22222222222222111 11 21 23
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhce
Q 010452 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (510)
Q Consensus 240 qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~t 277 (510)
.+|.|+.. ...=+|.|.|+|..++..-+++|-+.
T Consensus 70 ~~n~g~~~----~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 70 NFESLLQA----ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHh----CCCCEEEEECCCcccChhHHHHHHHH
Confidence 57777543 22347889999999998877775543
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.89 E-value=0.16 Score=42.67 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=55.3
Q ss_pred EEcccCCcchhhHHHHhhhhhc-cCCCCCeEEEEEeCCCCCHHHHHHHhhcCC----ceeeeecCCCCCCCcCCcchhhH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSL-MLVPYDLVWIVVEAGGVTNETASLIAKSKL----RTIHVGVDQKMPASWGGRHQLEA 238 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL-~lVp~~LhWIVVEd~~~T~~va~lL~rSGL----~ytHL~~~~~~p~~~~~r~~~~~ 238 (510)
||-|||.++.+. .++-.+| ++...+.--|||.|++.. .+.+++.+... ...++.... ..+. .
T Consensus 1 Viip~~n~~~~l---~~~l~sl~~q~~~~~~iivvdd~s~d-~t~~~~~~~~~~~~~~~~~~~~~~-------~~g~--~ 67 (180)
T cd06423 1 IIVPAYNEEAVI---ERTIESLLALDYPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVVRDKE-------NGGK--A 67 (180)
T ss_pred CeecccChHHHH---HHHHHHHHhCCCCceEEEEEeCCCcc-chHHHHHHHhccccceEEEEEecc-------cCCc--h
Confidence 577899998433 3322222 222136788899888642 23334443332 122222211 1111 2
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
.+||.|++.. ..-+|.|.|+|..+....+++|
T Consensus 68 ~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 68 GALNAGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 4799999886 3457899999999999999888
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.48 E-value=0.27 Score=45.91 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=62.0
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCH----HHHHHHhhcCCceeeeecCCCCCCCcCCcchhhH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTN----ETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp-~~LhWIVVEd~~~T~----~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~ 238 (510)
||.|||.... ..|.++-.+|.... +++-.|||+|++..+ .+.+++++.+..++.+....+. +. ..
T Consensus 2 iiip~~ne~~--~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~-------G~-~~ 71 (236)
T cd06435 2 IHVPCYEEPP--EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLP-------GA-KA 71 (236)
T ss_pred eeEeeCCCcH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCC-------CC-ch
Confidence 6889999862 12444444444432 257789999886432 4567777776655554433211 11 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
..+|.|++..... .-+|.|.|+|..++.+.+++|
T Consensus 72 ~a~n~g~~~a~~~--~d~i~~lD~D~~~~~~~l~~l 105 (236)
T cd06435 72 GALNYALERTAPD--AEIIAVIDADYQVEPDWLKRL 105 (236)
T ss_pred HHHHHHHHhcCCC--CCEEEEEcCCCCcCHHHHHHH
Confidence 3589999875321 238999999999999888775
No 19
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.29 E-value=0.29 Score=40.11 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=55.2
Q ss_pred CcEEEEEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCC--CHHHHHHHhhcCCceeeeecCCCCCCCcCCcch
Q 010452 159 PRTLIVVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQ 235 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~--T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~ 235 (510)
.+.|=||.|||.+. ..|.+.-..+..- ..+.-.|||+|+++ |.++++-+........+...+.+ . +
T Consensus 2 ~~~~siiip~~n~~---~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~-------~-g 70 (291)
T COG0463 2 MPKVSVVIPTYNEE---EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERN-------G-G 70 (291)
T ss_pred CccEEEEEeccchh---hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccC-------C-C
Confidence 47788999999998 2233322222221 11356889998864 44444444433322333322221 1 1
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
. ...||.++.+... -.|.|.|+|+. ....+..
T Consensus 71 ~-~~~~~~~~~~~~~----~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 71 L-GAARNAGLEYARG----DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred h-HHHHHhhHHhccC----CEEEEEccCCC-CCHHHHH
Confidence 1 2468999988755 56788888888 6555544
No 20
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=94.20 E-value=0.29 Score=45.21 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=58.9
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHh-h---cCCceeeeecCCCCCCCcCCcchhhHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIA-K---SKLRTIHVGVDQKMPASWGGRHQLEAK 239 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~-r---SGL~ytHL~~~~~~p~~~~~r~~~~~~ 239 (510)
||.|||.... .|.++-++|....+++--|||.|++. +.+.++++ . .++.+.+.... ....++ ..
T Consensus 1 ViIp~~Ne~~---~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~------~~~~Gk--~~ 68 (191)
T cd06436 1 VLVPCLNEEA---VIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLP------NARTGK--GD 68 (191)
T ss_pred CEEeccccHH---HHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCC------cCCCCH--HH
Confidence 5789999764 34444444443323688889988863 33344443 1 22222221110 011222 24
Q ss_pred HHHHHHHHHHhcc-CC-----e-EEEEecCCCccchhhhhhhhc
Q 010452 240 MRLRALRIVREEK-LD-----G-IVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 240 qRN~AL~~IR~~~-~~-----G-VVYFADDDNtYdl~LFdEmR~ 276 (510)
.+|.|++.++... .. + +|.|.|.|..++...++.+..
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 6999999987531 12 2 889999999999999887543
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.14 E-value=0.33 Score=44.34 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=58.1
Q ss_pred EEcccCCcchhhH-HHHhhh-hhccCCCCC--eEEEEEeCCCC--CHHHHH-HHhhcCCceeeeecCCCCCCCcCCcchh
Q 010452 164 VVTPTYVRTFQTL-HLTGVM-HSLMLVPYD--LVWIVVEAGGV--TNETAS-LIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 164 vVTPTY~R~~Q~a-~LTRLa-hTL~lVp~~--LhWIVVEd~~~--T~~va~-lL~rSGL~ytHL~~~~~~p~~~~~r~~~ 236 (510)
||.|||.+..... -|..|. |+ .+ + +..|||.|++. |..+.+ .+...+..++++..+. + ...+.
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~---~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~--~----~~~g~ 70 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALD---YP-KEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR--V----SISGK 70 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCC---CC-CCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC--c----ccchh
Confidence 5889999864433 223332 22 12 4 78899998853 334433 3344556666665431 1 01111
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
...+|.|+.. ...-+|.|.|+|..++.+.+++|-.
T Consensus 71 -~~a~n~g~~~----~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 71 -KNALTTAIKA----AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred -HHHHHHHHHH----hcCCEEEEECCCcccCHHHHHHHHH
Confidence 1236666654 3356999999999999999988654
No 22
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.10 E-value=0.32 Score=41.76 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=58.6
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRL 242 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp-~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qRN 242 (510)
||.|||.|. ..|.++.++|.... .+..-|||.|++..+ +.+++.+..-..+.+..+. +.+.. ..||
T Consensus 1 vii~~~~~~---~~l~~~l~sl~~~~~~~~~iiivdd~s~~~-~~~~~~~~~~~~~~~~~~~-------~~g~~--~a~n 67 (166)
T cd04186 1 IIIVNYNSL---EYLKACLDSLLAQTYPDFEVIVVDNASTDG-SVELLRELFPEVRLIRNGE-------NLGFG--AGNN 67 (166)
T ss_pred CEEEecCCH---HHHHHHHHHHHhccCCCeEEEEEECCCCch-HHHHHHHhCCCeEEEecCC-------CcChH--HHhh
Confidence 578999983 23455555554432 257778888886543 4444444332222222111 11121 3689
Q ss_pred HHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 243 RALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 243 ~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
.|++.. ...+|.|.|||..++.+.+++|-+
T Consensus 68 ~~~~~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 68 QGIREA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred HHHhhC----CCCEEEEECCCcEECccHHHHHHH
Confidence 999887 456899999999999998887654
No 23
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.71 E-value=0.17 Score=46.45 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=55.0
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC--CCCeEEEEEeCCCC--CHHHHH-HHhhcC-CceeeeecCCCCCCCcCCcchhh
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGV--TNETAS-LIAKSK-LRTIHVGVDQKMPASWGGRHQLE 237 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV--p~~LhWIVVEd~~~--T~~va~-lL~rSG-L~ytHL~~~~~~p~~~~~r~~~~ 237 (510)
||.|||.+.... .++.++|..- ..++.-|||+|++. |..+++ +.++-. +.+.+. .. +.+..
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~--~~-------n~G~~- 67 (224)
T cd06442 1 IIIPTYNERENI---PELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVR--PG-------KRGLG- 67 (224)
T ss_pred CeEeccchhhhH---HHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEec--CC-------CCChH-
Confidence 578999987443 3333333221 23688999998863 333333 222221 212221 11 11111
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 238 AKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
.-+|.|++..+. -+|.|.|+|..++.+.++.|-+
T Consensus 68 -~a~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 68 -SAYIEGFKAARG----DVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred -HHHHHHHHHcCC----CEEEEEECCCCCCHHHHHHHHH
Confidence 358999987543 4789999999999998877544
No 24
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=93.70 E-value=0.5 Score=42.36 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=59.4
Q ss_pred EEcccCCcchhhHHH-HhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHH
Q 010452 164 VVTPTYVRTFQTLHL-TGVMHSLMLVPYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKM 240 (510)
Q Consensus 164 vVTPTY~R~~Q~a~L-TRLahTL~lVp~~LhWIVVEd~~~--T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~q 240 (510)
||.|||.+..+...+ ..|...+.+...++.=|||.|++. |..+++-+....-..+.+....+ .+. ...
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n-------~G~--~~a 71 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRN-------FGQ--QAA 71 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCC-------CCc--HHH
Confidence 588999998776643 344444443223567678887753 33444333332223333433322 111 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 241 RN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+|.|+++.. .-+|.|.|+|..++.+..++|-+
T Consensus 72 ~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 72 LLAGLDHAR----GDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred HHHHHHhcC----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 788887653 35888999999999988877644
No 25
>PRK10073 putative glycosyl transferase; Provisional
Probab=93.54 E-value=0.74 Score=47.24 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=62.1
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccC-CCCCeEEEEEeCCCC--CHHHHHHHhhcCCceeeeecCCCCCCCcCCcc
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~l-Vp~~LhWIVVEd~~~--T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~ 234 (510)
+.|.|-||.|+|.+. .+|.+.-++|.. --.++-.|||+||++ |.++.+-+....-....+. ..| .
T Consensus 4 ~~p~vSVIIP~yN~~---~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~-~~n-------~- 71 (328)
T PRK10073 4 STPKLSIIIPLYNAG---KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLH-QAN-------A- 71 (328)
T ss_pred CCCeEEEEEeccCCH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE-CCC-------C-
Confidence 357899999999985 245554444332 113789999999974 3344433332211122221 211 1
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+. ...||.||+.. ..-.|.|.|+|..++.+.+++|-.
T Consensus 72 G~-~~arN~gl~~a----~g~yi~flD~DD~~~p~~l~~l~~ 108 (328)
T PRK10073 72 GV-SVARNTGLAVA----TGKYVAFPDADDVVYPTMYETLMT 108 (328)
T ss_pred Ch-HHHHHHHHHhC----CCCEEEEECCCCccChhHHHHHHH
Confidence 22 23699999764 334899999999999988877543
No 26
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=93.26 E-value=0.82 Score=37.48 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=53.2
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhcC--CceeeeecCCCCCCCcCCcchhhHHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSK--LRTIHVGVDQKMPASWGGRHQLEAKM 240 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp-~~LhWIVVEd~~~T~~va~lL~rSG--L~ytHL~~~~~~p~~~~~r~~~~~~q 240 (510)
||.|+|.+. ..|.....++.... .+...+|+.+++.......+.+... .....+....+ .+. ...
T Consensus 1 iii~~~~~~---~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~--~~~ 68 (156)
T cd00761 1 VIIPAYNEE---PYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEEN-------QGL--AAA 68 (156)
T ss_pred CEEeecCcH---HHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCC-------CCh--HHH
Confidence 477888883 33333333333332 2578888888854322222222221 12222211111 111 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 241 RN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+|.|+.+. ...+|.|.|+|+.++.+.++.+
T Consensus 69 ~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 69 RNAGLKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHh----cCCEEEEECCCCccCccHHHHH
Confidence 88888887 4678999999999999988775
No 27
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=93.19 E-value=0.92 Score=43.10 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=60.1
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhcCCc-eeeeecCCCCCCCcCCcch
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLR-TIHVGVDQKMPASWGGRHQ 235 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~---~LhWIVVEd~~~T~~va~lL~rSGL~-ytHL~~~~~~p~~~~~r~~ 235 (510)
|.|-||.|+|..... |.++-+.|....+ ++.=|||.|++ ++.+.+++++.+.+ +.++-...+ . ...+.
T Consensus 1 p~vsIiIp~~Ne~~~---l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~--~--~~~G~ 72 (241)
T cd06427 1 PVYTILVPLYKEAEV---LPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPP--S--QPRTK 72 (241)
T ss_pred CeEEEEEecCCcHHH---HHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecC--C--CCCch
Confidence 578899999998643 3444444443322 25556777765 56677777775542 222221111 0 01111
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
. ..+|.|++.. ..-+|.|.|+|..++.+.++++
T Consensus 73 ~--~a~n~g~~~a----~gd~i~~~DaD~~~~~~~l~~~ 105 (241)
T cd06427 73 P--KACNYALAFA----RGEYVVIYDAEDAPDPDQLKKA 105 (241)
T ss_pred H--HHHHHHHHhc----CCCEEEEEcCCCCCChHHHHHH
Confidence 1 3589999763 2347889999999999988763
No 28
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.12 E-value=0.6 Score=43.22 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=55.2
Q ss_pred EEEEcccCCcchhhHHHHhhhhhccCCC---CCeEEEEEeCCCCCHHHHHHHhhcCC--ceeeeecCCCCCCCcCCcchh
Q 010452 162 LIVVTPTYVRTFQTLHLTGVMHSLMLVP---YDLVWIVVEAGGVTNETASLIAKSKL--RTIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 162 IivVTPTY~R~~Q~a~LTRLahTL~lVp---~~LhWIVVEd~~~T~~va~lL~rSGL--~ytHL~~~~~~p~~~~~r~~~ 236 (510)
+-||.|||.+... |.++-++|+.-. .++-=|||++++. +.+.++++..+- +..++.... ..+..
T Consensus 2 ~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~-------~~~~~ 70 (249)
T cd02525 2 VSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNP-------KRIQS 70 (249)
T ss_pred EEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCC-------CCCch
Confidence 6789999998643 333333332221 2444567777753 334444444332 222332211 11111
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
..+|.|++.. ..-+|.|.|+|..++...+++|-
T Consensus 71 --~a~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 71 --AGLNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred --HHHHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 3599999875 23478999999999988887755
No 29
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.11 E-value=0.56 Score=48.84 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccC--CCCCeEEEEEeCCCCCHHHHHHHhhcCCc-----eeeeecCCCCCCCc
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLML--VPYDLVWIVVEAGGVTNETASLIAKSKLR-----TIHVGVDQKMPASW 230 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~l--Vp~~LhWIVVEd~~~T~~va~lL~rSGL~-----ytHL~~~~~~p~~~ 230 (510)
..|.|-||.|+|...... .+.-++|.. .|.++--|||+|++. +.+.+++++..-. -.++....+.|.+|
T Consensus 38 ~~p~VSVIIpa~Ne~~~L---~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVI---GECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCEEEEEecCCcHhHH---HHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 467899999999987544 344444433 232467788888753 2333333332111 12222122345555
Q ss_pred CCcchhhHHHHHHHHHHHHhccCC-eEEEEecCCCccchhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLD-GIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~-GVVYFADDDNtYdl~LFdEm 274 (510)
..+. ...|.|++..++...+ -+|.|.|+|...+.+-++++
T Consensus 114 ~Gk~----~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 114 SGKL----WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred cchH----HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 4332 3578899887755432 48999999999988877663
No 30
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=92.87 E-value=1.2 Score=41.98 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEEcccCCcchhhHHHHhhhhhccC-CCCC--eEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCc
Q 010452 154 FGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYD--LVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASW 230 (510)
Q Consensus 154 ~g~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~l-Vp~~--LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~ 230 (510)
......|.|-||-|||.+..- |.+.-+.+.. ..++ +.=|||.|++. +.+.+++++.+-...++.... .
T Consensus 23 ~~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~---~-- 93 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFP---E-- 93 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcC---C--
Confidence 345567889999999998633 3333333222 1112 55678888753 233444443321112222111 0
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
..+. ...||.|++... .-+|.|.|+|..++.+.+++|
T Consensus 94 -~~g~--~~a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l 130 (251)
T cd06439 94 -RRGK--AAALNRALALAT----GEIVVFTDANALLDPDALRLL 130 (251)
T ss_pred -CCCh--HHHHHHHHHHcC----CCEEEEEccccCcCHHHHHHH
Confidence 1122 246899998753 268999999999998877764
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.79 E-value=1 Score=41.75 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred EEEEcccCCcc-hhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHH-hhcC-CceeeeecCCCCCCCcCCcchhhH
Q 010452 162 LIVVTPTYVRT-FQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLI-AKSK-LRTIHVGVDQKMPASWGGRHQLEA 238 (510)
Q Consensus 162 IivVTPTY~R~-~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL-~rSG-L~ytHL~~~~~~p~~~~~r~~~~~ 238 (510)
|-||.|||.+. .... +.-+.|..-. +...|||.|++.. .+..+| .... ....++. .. ..+..
T Consensus 2 isVvIp~~ne~~~~l~---~~l~sl~~q~-~~eiivvdd~s~d-~~~~~l~~~~~~~~~~v~~-~~-------~~g~~-- 66 (235)
T cd06434 2 VTVIIPVYDEDPDVFR---ECLRSILRQK-PLEIIVVTDGDDE-PYLSILSQTVKYGGIFVIT-VP-------HPGKR-- 66 (235)
T ss_pred eEEEEeecCCChHHHH---HHHHHHHhCC-CCEEEEEeCCCCh-HHHHHHHhhccCCcEEEEe-cC-------CCChH--
Confidence 56899999986 3332 2222222222 4788999888643 344443 1111 1112221 11 11122
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
..+|.||+.. ..-+|.|.|+|..++.+.+++|-
T Consensus 67 ~a~n~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 67 RALAEGIRHV----TTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred HHHHHHHHHh----CCCEEEEECCCceeChhHHHHHH
Confidence 3578888765 34599999999999999877754
No 32
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.51 E-value=0.5 Score=43.85 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=57.1
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHh--hcCCceeeeecCCCCCCCcCCcchhhHHHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIA--KSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~--rSGL~ytHL~~~~~~p~~~~~r~~~~~~qR 241 (510)
+|.|||.+.. ..|.+.-++|..- ....|||++++.. .+...++ ..++.+.+. +.+ .+. ...|
T Consensus 1 ~vI~~yn~~~--~~l~~~l~sl~~q--~~~iivvDn~s~~-~~~~~~~~~~~~i~~i~~--~~n-------~G~--~~a~ 64 (237)
T cd02526 1 AVVVTYNPDL--SKLKELLAALAEQ--VDKVVVVDNSSGN-DIELRLRLNSEKIELIHL--GEN-------LGI--AKAL 64 (237)
T ss_pred CEEEEecCCH--HHHHHHHHHHhcc--CCEEEEEeCCCCc-cHHHHhhccCCcEEEEEC--CCc-------eeh--HHhh
Confidence 4778998763 2334444444332 3677889887532 2222232 344443332 221 111 2369
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 242 N~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
|.|++..+.. ..=+|.|.|+|...+.+.+++|
T Consensus 65 N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 65 NIGIKAALEN-GADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred hHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHH
Confidence 9999987664 2348999999999999999998
No 33
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=92.50 E-value=1.4 Score=40.04 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=58.7
Q ss_pred EEcccCCcchhhH-HHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHH
Q 010452 164 VVTPTYVRTFQTL-HLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (510)
Q Consensus 164 vVTPTY~R~~Q~a-~LTRLahTL~lVp-~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qR 241 (510)
||-|+|....-.. -|..+.+.. -| .++-=|||.|++ ++.|.+++++.+..+.....+ ..+++. ..+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~--~p~~~~eiivvdd~s-~D~t~~~~~~~~~~~~~~~~~-------~~~gk~--~al 68 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQD--YPRELYRIFVVADNC-TDDTAQVARAAGATVLERHDP-------ERRGKG--YAL 68 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcC--CCCcccEEEEEeCCC-CchHHHHHHHcCCeEEEeCCC-------CCCCHH--HHH
Confidence 4678888753222 233333211 11 134457888886 466778888777653211111 112221 358
Q ss_pred HHHHHHHHhccC-CeEEEEecCCCccchhhhhhhh
Q 010452 242 LRALRIVREEKL-DGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 242 N~AL~~IR~~~~-~GVVYFADDDNtYdl~LFdEmR 275 (510)
|.|+++.++... .-+|.|.|.|..++.+.+.+|.
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 889988864333 3488999999999999887764
No 34
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=92.04 E-value=0.36 Score=44.84 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC--CCCeEEEEEeCCCC--CHH-HHHHHhh---cCCceeeeecCCCCCCCcCCcch
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGV--TNE-TASLIAK---SKLRTIHVGVDQKMPASWGGRHQ 235 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV--p~~LhWIVVEd~~~--T~~-va~lL~r---SGL~ytHL~~~~~~p~~~~~r~~ 235 (510)
||.|||.+..+ |.++-++|..- +.++-.|||+|++. |.. +.++..+ .++.+.++... .+ ...+
T Consensus 1 ViIp~yn~~~~---l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~--~~----~~~G 71 (219)
T cd06913 1 IILPVHNGEQW---LDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHN--SP----SPKG 71 (219)
T ss_pred CEEeecCcHHH---HHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEeccc--CC----CCcc
Confidence 58899998643 33333333221 22578899999863 322 2232222 23333333211 11 1112
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
.. ..||.|++.. ..=+|.|.|+|..++.+-+++
T Consensus 72 ~~-~a~N~g~~~a----~gd~i~~lD~D~~~~~~~l~~ 104 (219)
T cd06913 72 VG-YAKNQAIAQS----SGRYLCFLDSDDVMMPQRIRL 104 (219)
T ss_pred HH-HHHHHHHHhc----CCCEEEEECCCccCChhHHHH
Confidence 22 3689888643 223899999999998776654
No 35
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=91.26 E-value=1.9 Score=38.30 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=57.3
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCH---HHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHH
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTN---ETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAK 239 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~T~---~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~ 239 (510)
||.|+|.+..+.. +.-++|..- -.++--|||+|++... .+.++.++.+....|+--. +.++ ....
T Consensus 1 ivip~~n~~~~l~---~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~ 69 (182)
T cd06420 1 LIITTYNRPEALE---LVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE---DEGF-----RKAK 69 (182)
T ss_pred CEEeecCChHHHH---HHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC---Ccch-----hHHH
Confidence 5889999865433 323333211 1256778999886422 2333444445555555322 1111 1123
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 240 qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
.||.|++..+ .-+|.|.|+|...+...++.|.+
T Consensus 70 ~~n~g~~~a~----g~~i~~lD~D~~~~~~~l~~~~~ 102 (182)
T cd06420 70 IRNKAIAAAK----GDYLIFIDGDCIPHPDFIADHIE 102 (182)
T ss_pred HHHHHHHHhc----CCEEEEEcCCcccCHHHHHHHHH
Confidence 6888887643 45899999999999888777554
No 36
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=91.01 E-value=2 Score=40.33 Aligned_cols=102 Identities=11% Similarity=0.196 Sum_probs=60.4
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCCCC---CeEEEEEeCCC-CCH-HHHHHHh---hcCCceeeeecCCCCCCCcC
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGG-VTN-ETASLIA---KSKLRTIHVGVDQKMPASWG 231 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~---~LhWIVVEd~~-~T~-~va~lL~---rSGL~ytHL~~~~~~p~~~~ 231 (510)
|.|-||-|+|.... .|.+.-.+|....+ .+--|||+|+. .|. .+.+++. ..++..+|+..+.+ .++
T Consensus 1 p~vSViIp~yNe~~---~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~--~G~- 74 (232)
T cd06437 1 PMVTVQLPVFNEKY---VVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADR--TGY- 74 (232)
T ss_pred CceEEEEecCCcHH---HHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCC--CCC-
Confidence 45789999999853 34444444433222 25667787642 232 2333332 23667777764321 111
Q ss_pred CcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
....+|.|++.. ..-+|.|.|.|...+.+.+++|-.
T Consensus 75 -----k~~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 -----KAGALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred -----chHHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhh
Confidence 113588998654 234899999999999988887543
No 37
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=90.74 E-value=1.9 Score=44.05 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=63.0
Q ss_pred CCcEEEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchh
Q 010452 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~ 236 (510)
..+.|-||-|+|.......+ |..+.+.+.. +.+.-.|||+|++ ++.+.+++++.|..+.+... .++..-.+++.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~~--~~~~~~~n~Gk- 103 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGS-TDATAERAAAAGARVVSREE--ILPELPPRPGK- 103 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCC-ccHHHHHHHHhcchhhcchh--hhhccccCCCH-
Confidence 45789999999998655443 3334433332 2246778999886 45667777877765444211 11110112222
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNt-Ydl~LFdEm 274 (510)
+ ...|.|++. ...-+|.|.|.|.. |+.+.+.+|
T Consensus 104 g-~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 104 G-EALWRSLAA----TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred H-HHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHH
Confidence 2 245667653 22358889999996 888876653
No 38
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=90.56 E-value=1.2 Score=47.25 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=60.4
Q ss_pred CCCCcEEEEEcccCCcchhhHHHHhhhhhccCC--CC-CeEEEEEeCCCCCHHHHHHHhh-----cCCceeeeecCCCCC
Q 010452 156 FKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PY-DLVWIVVEAGGVTNETASLIAK-----SKLRTIHVGVDQKMP 227 (510)
Q Consensus 156 ~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lV--p~-~LhWIVVEd~~~T~~va~lL~r-----SGL~ytHL~~~~~~p 227 (510)
....|.|=||-|+|.... .|.+.-+.|..- |. .+.-|||.|++ ++.+.+++++ .++..+++. .
T Consensus 45 ~~~~P~vsVIIP~yNe~~---~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~~--~--- 115 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSED---TLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYMN--S--- 115 (439)
T ss_pred cCCCCCEEEEEEeCCChH---HHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEeC--C---
Confidence 345788999999999763 344444444322 32 25567887775 3444444432 233333332 1
Q ss_pred CCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 228 ASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 228 ~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
+.++ ...+|.|++..+ .=+|.|.|+|+..+.+.+++|-
T Consensus 116 ----~~Gk--a~AlN~gl~~s~----g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 116 ----DQGK--AKALNAAIYNSI----GKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred ----CCCH--HHHHHHHHHHcc----CCEEEEECCCCCcChHHHHHHH
Confidence 1222 235899997643 2388999999999999888753
No 39
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.07 E-value=0.4 Score=44.40 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=51.1
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCC--CCCeEEEEEeCCCC--C-HHHHHHHhhcCC-ceeeeecCCCCCCCcCCc
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGV--T-NETASLIAKSKL-RTIHVGVDQKMPASWGGR 233 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lV--p~~LhWIVVEd~~~--T-~~va~lL~rSGL-~ytHL~~~~~~p~~~~~r 233 (510)
|.|.||-|+|.+.... -+.-+.|... + ++.-|||.|++. + +.+.++.++.+- ....+....+ .
T Consensus 1 P~v~Vvip~~~~~~~l---~~~l~sl~~~~~~-~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~-------~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVL---RRCLESLLAQDYP-RLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN-------P 69 (228)
T ss_dssp --EEEE--BSS-HHHH---HHHHHHHTTSHHH-TEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-----------H
T ss_pred CEEEEEEEecCCHHHH---HHHHHHHHcCCCC-CeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC-------C
Confidence 4589999999986633 2333333322 4 688888886643 2 234445444432 2333322111 1
Q ss_pred c-hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 234 H-QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 234 ~-~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
+ ......+|.|++.++ .-+|.|.|||...+.+.++++-
T Consensus 70 g~~~k~~a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 70 GPGGKARALNEALAAAR----GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HHHHHHHHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHH
T ss_pred CcchHHHHHHHHHHhcC----CCEEEEECCCcEECHHHHHHHH
Confidence 1 012246788888765 3499999999999988887743
No 40
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=89.98 E-value=1.9 Score=42.13 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=55.0
Q ss_pred cCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCC-HHHHHHHhh-cCCceeeeecCCCCCCCcCCcchhhHHHHHHHH
Q 010452 168 TYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVT-NETASLIAK-SKLRTIHVGVDQKMPASWGGRHQLEAKMRLRAL 245 (510)
Q Consensus 168 TY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T-~~va~lL~r-SGL~ytHL~~~~~~p~~~~~r~~~~~~qRN~AL 245 (510)
||.+- ...|.++.+.|..- ....|||++++.+ ..+.++++. ..+.+.|.. .|. +.. .-+|.|+
T Consensus 2 tyn~~--~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~--~N~-------G~a--~a~N~Gi 66 (281)
T TIGR01556 2 TFNPD--LEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLG--DNQ-------GIA--GAQNQGL 66 (281)
T ss_pred ccCcc--HHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECC--CCc-------chH--HHHHHHH
Confidence 66662 12333444444432 3678999999754 356666664 344454432 222 222 2599999
Q ss_pred HHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 246 RIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 246 ~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
++..++.. -.|.|.|||...+.+.+++|
T Consensus 67 ~~a~~~~~-d~i~~lD~D~~~~~~~l~~l 94 (281)
T TIGR01556 67 DASFRRGV-QGVLLLDQDSRPGNAFLAAQ 94 (281)
T ss_pred HHHHHCCC-CEEEEECCCCCCCHHHHHHH
Confidence 99876533 46679999999987777664
No 41
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=89.92 E-value=4.2 Score=41.80 Aligned_cols=104 Identities=11% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCcEEEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHh-hcCCceeeeecCCCCCCCcCCc
Q 010452 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGV--TNETASLIA-KSKLRTIHVGVDQKMPASWGGR 233 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~--T~~va~lL~-rSGL~ytHL~~~~~~p~~~~~r 233 (510)
..+.|-||-|+|....-..+ +.++...+...+.++-=|||+|+++ |.++.+-+. +.+....++....+.
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~------- 76 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNY------- 76 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCC-------
Confidence 34679999999997655543 3445555555555677899999863 444443333 335554444333221
Q ss_pred chhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 234 HQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 234 ~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+. + ...|.|+++- ..-+|.|.|+|..|+.+.+.+|
T Consensus 77 G~-~-~A~~~G~~~A----~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 77 GQ-H-SAIMAGFSHV----TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CH-H-HHHHHHHHhC----CCCEEEEECCCCCCCHHHHHHH
Confidence 11 1 2367787653 2347889999999999887764
No 42
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=89.16 E-value=2.8 Score=38.69 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=59.0
Q ss_pred EEcccCCcchhhH-HHHhhhhhccC-CCCCeEEEEEeCCCC--CHHHH-HHHhhcCCceeeeecCCCCCCCcCCcchhhH
Q 010452 164 VVTPTYVRTFQTL-HLTGVMHSLML-VPYDLVWIVVEAGGV--TNETA-SLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (510)
Q Consensus 164 vVTPTY~R~~Q~a-~LTRLahTL~l-Vp~~LhWIVVEd~~~--T~~va-~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~ 238 (510)
||.|+|....-.. -|..+...+.. -+.++-.|||.|++. |..+. ++.++.+-..+++..+.+. +..
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~-------G~~-- 71 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNR-------GKG-- 71 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCC-------CcH--
Confidence 5789998653222 34454433321 223688999998863 33333 3333333333444333221 111
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhce
Q 010452 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (510)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~t 277 (510)
..+|.|++... .=+|.|.|+|..|+.+.+++|-+.
T Consensus 72 ~a~~~g~~~a~----gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 72 GAVRAGMLAAR----GDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred HHHHHHHHHhc----CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 35888887653 358999999999999988886543
No 43
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=87.59 E-value=3.1 Score=36.90 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=55.8
Q ss_pred EEcccCCcchhhHHHHhhhhhccCC---CCCeEEEEEeCCCCCHHHHHHHhhcCCce---eeeecCCCCCCCcCCcchhh
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLV---PYDLVWIVVEAGGVTNETASLIAKSKLRT---IHVGVDQKMPASWGGRHQLE 237 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lV---p~~LhWIVVEd~~~T~~va~lL~rSGL~y---tHL~~~~~~p~~~~~r~~~~ 237 (510)
||.|||.+... |-++-+.|..- ..+...|||+|++.. .+.+++++.+-.+ +++..+.+. +..
T Consensus 1 iii~~~n~~~~---l~~~l~sl~~~~~~~~~~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~-------G~~- 68 (185)
T cd04179 1 VVIPAYNEEEN---IPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNF-------GKG- 68 (185)
T ss_pred CeecccChHhh---HHHHHHHHHHHhccCCCEEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCC-------Ccc-
Confidence 57899997633 33333333322 126888999988642 3344444433322 223333221 111
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 238 AKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
..+|.|++..+. =+|.|.|+|..++.+.+++|-.
T Consensus 69 -~a~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 69 -AAVRAGFKAARG----DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred -HHHHHHHHHhcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 358888877543 4788999999999998877543
No 44
>PRK11204 N-glycosyltransferase; Provisional
Probab=86.19 E-value=7.9 Score=40.22 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCC-CCCeEEEEEeCCCC--CHHHHHHHhhc--CCceeeeecCCCCCCCcCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGV--TNETASLIAKS--KLRTIHVGVDQKMPASWGG 232 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVVEd~~~--T~~va~lL~rS--GL~ytHL~~~~~~p~~~~~ 232 (510)
..|.|-||.|+|.+.... .+....+..- -+++-.|||.|+++ |.++.+-+... ++.+.|. +. +
T Consensus 52 ~~p~vsViIp~yne~~~i---~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~--~~-------n 119 (420)
T PRK11204 52 EYPGVSILVPCYNEGENV---EETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHL--AE-------N 119 (420)
T ss_pred CCCCEEEEEecCCCHHHH---HHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEc--CC-------C
Confidence 347799999999986433 3333333222 12688899999864 33322222221 2333332 21 1
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
.++. ..+|.|++.. ..=+|.|.|+|+..+.+.+++|-
T Consensus 120 ~Gka--~aln~g~~~a----~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 120 QGKA--NALNTGAAAA----RSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred CCHH--HHHHHHHHHc----CCCEEEEECCCCCCChhHHHHHH
Confidence 2222 3588998763 22378889999999988877653
No 45
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.79 E-value=6.9 Score=38.72 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=56.2
Q ss_pred EEcccCCcchhhHHHHhhhhhcc-CCCCC--eEEEEEeCCCCCHHHHHHHh---hcCCc-eeeeecCCCCCCCcCCcchh
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLM-LVPYD--LVWIVVEAGGVTNETASLIA---KSKLR-TIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~-lVp~~--LhWIVVEd~~~T~~va~lL~---rSGL~-ytHL~~~~~~p~~~~~r~~~ 236 (510)
||-|||.+.. ..|.+.-++|. +.++. .--|||+|++....+..+++ ....+ .+.+..+.+. +.
T Consensus 2 IIIp~~N~~~--~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~--------G~ 71 (299)
T cd02510 2 VIIIFHNEAL--STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKRE--------GL 71 (299)
T ss_pred EEEEEecCcH--HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCC--------CH
Confidence 6778998762 34445444443 33322 36899999976544444432 22222 2223222221 22
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
...||.|++.- ..-+|.|.|+|-.++...+++|
T Consensus 72 -~~a~N~g~~~A----~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 72 -IRARIAGARAA----TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred -HHHHHHHHHHc----cCCEEEEEeCCcccCccHHHHH
Confidence 13699999874 2458999999999887777664
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=84.56 E-value=6.4 Score=39.23 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=66.5
Q ss_pred EEcccCCcchh--h--H---HHHhhhhhccCCCCCeEEEEEeCCCCC---HHHHHHHhhcCCc-eeeeecCCCCCCCcCC
Q 010452 164 VVTPTYVRTFQ--T--L---HLTGVMHSLMLVPYDLVWIVVEAGGVT---NETASLIAKSKLR-TIHVGVDQKMPASWGG 232 (510)
Q Consensus 164 vVTPTY~R~~Q--~--a---~LTRLahTL~lVp~~LhWIVVEd~~~T---~~va~lL~rSGL~-ytHL~~~~~~p~~~~~ 232 (510)
||.|.+.+-.. . . -|.++.++.. +.++.=||||+++.. ..+.++++..+.. |.+...... .| .
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~--~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~---~f-~ 75 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQS--DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGE---PF-S 75 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCC--CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCC---Cc-C
Confidence 67788887632 1 1 1444555433 447888999988643 4678888888876 554432211 12 1
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+ ...||.|.+.- ..-+|.|.|.|-..+.+.++++.+
T Consensus 76 ~----a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 76 R----AKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred H----HHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 23699999775 455899999999999999998766
No 47
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=84.47 E-value=13 Score=38.39 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=60.9
Q ss_pred CCCcEEEEEcccCCcchhhHH-HHhhhhhcc----CCC-CCeEEEEEeCCCC--CHHHHHHHhhcC----CceeeeecCC
Q 010452 157 KNPRTLIVVTPTYVRTFQTLH-LTGVMHSLM----LVP-YDLVWIVVEAGGV--TNETASLIAKSK----LRTIHVGVDQ 224 (510)
Q Consensus 157 ~~~~~IivVTPTY~R~~Q~a~-LTRLahTL~----lVp-~~LhWIVVEd~~~--T~~va~lL~rSG----L~ytHL~~~~ 224 (510)
.+.+.|-||-|+|........ |.++.+.+. .-+ .++--|||+||++ |.++++-+.... ...+.+..+.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 467889999999997554432 233333322 122 2578899999963 445444443321 1223332222
Q ss_pred CCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 225 KMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 225 ~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
|. +.. ..+|.|++.- ..-+|.|.|.|+.++.+.++.+
T Consensus 147 N~-------G~~--~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l 183 (333)
T PTZ00260 147 NK-------GKG--GAVRIGMLAS----RGKYILMVDADGATDIDDFDKL 183 (333)
T ss_pred CC-------ChH--HHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHH
Confidence 21 221 2477788642 2347899999999998876554
No 48
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=75.83 E-value=17 Score=41.72 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCCcEEEEEcccCCcchhhHHHHhhhhhccCCCC---CeEEEEEeCCCC--C---------------HHHHHHHhhcCCc
Q 010452 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGV--T---------------NETASLIAKSKLR 216 (510)
Q Consensus 157 ~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~---~LhWIVVEd~~~--T---------------~~va~lL~rSGL~ 216 (510)
...|.|-||-|||.......+- .-..+....| ++.-|||+|+++ | +.+.++-++.|+.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~--tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVAT--TVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN 205 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHH--HHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE
Confidence 3457888888999987654331 1122333333 478899999842 2 3566677777777
Q ss_pred eeeeecCCCCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 217 TIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 217 ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
|.+- +++. ..+. ...|.||++. ..-+|.|-|.|...+.+..++
T Consensus 206 yi~r--~~n~------~~KA--gnLN~al~~a----~gd~Il~lDAD~v~~pd~L~~ 248 (713)
T TIGR03030 206 YITR--PRNV------HAKA--GNINNALKHT----DGELILIFDADHVPTRDFLQR 248 (713)
T ss_pred EEEC--CCCC------CCCh--HHHHHHHHhc----CCCEEEEECCCCCcChhHHHH
Confidence 6542 2211 1112 2578999753 224889999999988887766
No 49
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=75.37 E-value=7 Score=35.96 Aligned_cols=102 Identities=7% Similarity=0.050 Sum_probs=55.4
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccC--CCCCeEEEEEeCCCCCHHHHHHHh----hc-CCceeeeecCCCCCCCcCC
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLML--VPYDLVWIVVEAGGVTNETASLIA----KS-KLRTIHVGVDQKMPASWGG 232 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~l--Vp~~LhWIVVEd~~~T~~va~lL~----rS-GL~ytHL~~~~~~p~~~~~ 232 (510)
|.|-||.|+|...... .++-+.|.. .+ ++--|||.|++. ..+.++++ +. .+.+.++....+. +..
T Consensus 1 p~vsviip~~n~~~~l---~~~L~sl~~q~~~-~~eiivVdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~--g~~- 72 (196)
T cd02520 1 PGVSILKPLCGVDPNL---YENLESFFQQDYP-KYEILFCVQDED-DPAIPVVRKLIAKYPNVDARLLIGGEKV--GIN- 72 (196)
T ss_pred CCeEEEEecCCCCccH---HHHHHHHHhccCC-CeEEEEEeCCCc-chHHHHHHHHHHHCCCCcEEEEecCCcC--CCC-
Confidence 4578999999986443 333333322 23 577778888764 22333333 32 2333333221111 000
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
....+.|.|++.. ..-+|.|.|+|..++.+.+++|-.
T Consensus 73 ---~~~~~~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 73 ---PKVNNLIKGYEEA----RYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred ---HhHHHHHHHHHhC----CCCEEEEECCCceEChhHHHHHHH
Confidence 1112456777643 234778999999999998888643
No 50
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=72.84 E-value=19 Score=38.32 Aligned_cols=97 Identities=12% Similarity=0.239 Sum_probs=58.3
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCC--CCCeEEEEEeCCCCCHHHHHHHhhc-----CCceeeeecCCCCCCCc
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGVTNETASLIAKS-----KLRTIHVGVDQKMPASW 230 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lV--p~~LhWIVVEd~~~T~~va~lL~rS-----GL~ytHL~~~~~~p~~~ 230 (510)
..|.|-||-|+|...... .+..+++... | ++-=|||.|++. +.+.+++++. ++.+.|.. .
T Consensus 73 ~~p~vsViIP~yNE~~~i---~~~l~sll~q~yp-~~eIivVdDgs~-D~t~~~~~~~~~~~~~v~vv~~~--~------ 139 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNA---RETIHAALAQTYT-NIEVIAINDGSS-DDTAQVLDALLAEDPRLRVIHLA--H------ 139 (444)
T ss_pred CCCcEEEEEEeCCCHHHH---HHHHHHHHcCCCC-CeEEEEEECCCC-ccHHHHHHHHHHhCCCEEEEEeC--C------
Confidence 457899999999986443 2333333322 4 688889988863 2233333332 34444332 1
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
++++ ...+|.|++. ...-+|.+.|+|+..+.+..++|
T Consensus 140 -n~Gk--a~AlN~gl~~----a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 140 -NQGK--AIALRMGAAA----ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred -CCCH--HHHHHHHHHh----CCCCEEEEECCCCCcCHHHHHHH
Confidence 1222 2358888865 23458999999999998866553
No 51
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=62.30 E-value=30 Score=34.77 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=61.1
Q ss_pred CcEEEEEcccCCcc-hhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhc---CCceeeeecCCCCCCCcCCcc
Q 010452 159 PRTLIVVTPTYVRT-FQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKS---KLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 159 ~~~IivVTPTY~R~-~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rS---GL~ytHL~~~~~~p~~~~~r~ 234 (510)
.+.|.+|.+||.|. .+...|..|++.--..-. ||+-|...++.+.++++.. .+.+.+.. .|+ +|..
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~----iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~--~Nl--G~ag-- 71 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDV----IVVVDNGSTDGSLEALKARFFPNVRLIENG--ENL--GFAG-- 71 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcE----EEEccCCCCCCCHHHHHhhcCCcEEEEEcC--CCc--cchh--
Confidence 47799999999994 677788878755554432 4344555566666666665 44444443 333 1211
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+ =|.+.++.-....+ .|+|.++|=..+...+++|.+
T Consensus 72 g-----~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~ 107 (305)
T COG1216 72 G-----FNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLK 107 (305)
T ss_pred h-----hhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHH
Confidence 1 14455554333222 788888886666777766543
No 52
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=58.80 E-value=1.6e+02 Score=30.78 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEE--cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCC--CCCHHHHHHHhhcCCce
Q 010452 142 IIERVQREQRAHFGFKNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAG--GVTNETASLIAKSKLRT 217 (510)
Q Consensus 142 i~ervQ~eqr~~~g~~~~~~IivV--TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~--~~T~~va~lL~rSGL~y 217 (510)
-++.+.+|-+...+...-+.||+- |||+-++.+...|.+....+. +...+ -|-+|.. ..+.+..+.|++.|+..
T Consensus 35 y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~-~~~~~-eitie~~p~~~t~e~l~~l~~~G~~r 112 (374)
T PRK05799 35 YIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLN-KKEDL-EFTVEGNPGTFTEEKLKILKSMGVNR 112 (374)
T ss_pred HHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCC-CCCCC-EEEEEeCCCcCCHHHHHHHHHcCCCE
Confidence 355666665543222234677765 999988777666655544332 32233 4567754 35789999999999999
Q ss_pred eeeecCCCCCCC--cCCcchhhHHHHHHHHHHHHhccCC
Q 010452 218 IHVGVDQKMPAS--WGGRHQLEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 218 tHL~~~~~~p~~--~~~r~~~~~~qRN~AL~~IR~~~~~ 254 (510)
.++++..--+.. ...|.. ...+-..|++.+++...+
T Consensus 113 vsiGvqS~~d~~L~~l~R~~-~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 113 LSIGLQAWQNSLLKYLGRIH-TFEEFLENYKLARKLGFN 150 (374)
T ss_pred EEEECccCCHHHHHHcCCCC-CHHHHHHHHHHHHHcCCC
Confidence 999986321110 112211 123455788888887544
No 53
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=45.87 E-value=1.5e+02 Score=35.36 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcc
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~---~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~ 234 (510)
..|.|-||-|||....-... +....+....| ++.=|||+|++ ++.+.++.++.|+.|.+-. ++ .+
T Consensus 258 ~~P~VsViIPtYNE~~~vv~--~tI~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R~--~n-------~~ 325 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVK--NTIYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIARP--TH-------EH 325 (852)
T ss_pred CCCcEEEEEecCCCcHHHHH--HHHHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEeC--CC-------Cc
Confidence 45889999999997543322 11222222322 35557787775 5678888888888775432 11 11
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
. ...+.|.||++.+ .=+|.|-|.|...+.+..++
T Consensus 326 g-KAGnLN~aL~~a~----GEyIavlDAD~ip~pdfL~~ 359 (852)
T PRK11498 326 A-KAGNINNALKYAK----GEFVAIFDCDHVPTRSFLQM 359 (852)
T ss_pred c-hHHHHHHHHHhCC----CCEEEEECCCCCCChHHHHH
Confidence 1 1236899998742 23888999999988777665
No 54
>PRK00523 hypothetical protein; Provisional
Probab=44.86 E-value=24 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhee
Q 010452 36 AAIFWLVLHGLCCLISLVLGFRFSRLV 62 (510)
Q Consensus 36 ~~~~wl~lh~~~c~~sl~lgfrfsrl~ 62 (510)
+..+|++|=.+|.|+.+++||=++|--
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998743
No 55
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=43.79 E-value=27 Score=35.70 Aligned_cols=40 Identities=38% Similarity=0.530 Sum_probs=31.1
Q ss_pred eecccccccCCCCCCChHHhhhHHH--------HHHHHHHHHHhcCCC
Q 010452 117 VVGRHGIRIRPWPHPNPTEVMKAHK--------IIERVQREQRAHFGF 156 (510)
Q Consensus 117 ~vgrh~i~irpwphp~p~e~~~ah~--------i~ervQ~eqr~~~g~ 156 (510)
-|||-|.+|-|-|..--.+|..|++ |+.|||+||...-|.
T Consensus 210 ~vGRvGLp~yPr~~~~~~~V~eay~fll~~g~~~~~rV~~EQ~~ilgd 257 (265)
T COG5494 210 AVGRVGLPIYPRSDSTVMRVLEAYNFLLENGDEIFNRVQKEQMEILGD 257 (265)
T ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence 4899999998766666667877764 789999999875553
No 56
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=40.01 E-value=80 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=35.4
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhcCCceeeeecC
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGVD 223 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL--~lVp~~LhWIVVEd~~----~T~~va~lL~rSGL~ytHL~~~ 223 (510)
..+|+|+|.- ..+|.+||+-| +|+| |.|++.. ....+.++|++.|+.++.+-.+
T Consensus 2 e~vl~I~~~~-----~~~~a~l~~~iGNrH~p-----~~i~~~~l~v~~d~~l~~~L~~lg~~~~~~~~~ 61 (87)
T PF05194_consen 2 EEVLVIRPRD-----PKEMARLAYHIGNRHWP-----LFIEEDELYVPYDHVLEELLRKLGLEVEKVERP 61 (87)
T ss_dssp EEEEEEE-SS-----HHHHHHHHHHHHHTT-------EEEETTEEEEE--HHHHHHHHHTT-EEEEEEEE
T ss_pred ceEEEEeCCC-----HHHHHHHHHHHcCCccc-----eEEcCCEEEecCcHHHHHHHHHCCCccEEeeec
Confidence 4578888843 34566888887 6676 5666663 3457999999999999888543
No 57
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=39.42 E-value=1.1e+02 Score=28.31 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=38.2
Q ss_pred CcEEEEEcccCCcchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhcCCceeeeec
Q 010452 159 PRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGV 222 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~LTRLahTL--~lVp~~LhWIVVEd~~----~T~~va~lL~rSGL~ytHL~~ 222 (510)
+..+++|+|.- ..+|.|+|+-| +|+| +-++++. ....+.++|++.|++|.+.-.
T Consensus 75 ~e~vl~i~~~~-----~~~~~~l~y~lGNrH~p-----l~i~~~~l~v~~D~~l~~ml~~lg~~~~~~~~ 134 (136)
T cd00571 75 PEDVLVITPKD-----MLELARLAYHLGNRHVP-----LQIEEDELYIPYDHVLEDMLRKLGVRYERVER 134 (136)
T ss_pred CCcEEEEEcCC-----HHHHHHHHHHhcCCccc-----eEEeCCEEEEcCCHHHHHHHHHcCCeeEEEec
Confidence 45567788754 55789999887 4554 3445542 356899999999999987643
No 58
>PRK01844 hypothetical protein; Provisional
Probab=38.48 E-value=33 Score=29.36 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhee
Q 010452 37 AIFWLVLHGLCCLISLVLGFRFSRLV 62 (510)
Q Consensus 37 ~~~wl~lh~~~c~~sl~lgfrfsrl~ 62 (510)
..+|++|=.+|.|+.+++||=++|-.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999988743
No 59
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=36.84 E-value=17 Score=33.85 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.3
Q ss_pred CCeEEEEe-cCCCccchhh
Q 010452 253 LDGIVMFA-DDSNMHSMEL 270 (510)
Q Consensus 253 ~~GVVYFA-DDDNtYdl~L 270 (510)
..|++||+ |||++|+..+
T Consensus 100 ~kG~avFaS~d~sVy~a~~ 118 (124)
T PF14263_consen 100 VKGIAVFASDDDSVYQASL 118 (124)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeEEEEEeeCChhhhccce
Confidence 47988887 6799998765
No 60
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=36.29 E-value=1.7e+02 Score=30.59 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHHHHHHHh---cCC--CCCCcEEEEE--cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCC--CCCHHHHHHHhh
Q 010452 142 IIERVQREQRA---HFG--FKNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAG--GVTNETASLIAK 212 (510)
Q Consensus 142 i~ervQ~eqr~---~~g--~~~~~~IivV--TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~--~~T~~va~lL~r 212 (510)
.++.+.+|-+. .++ .....+||+- |||.-.+.|..+|.....-...+..+. -|-+|.. ..+.+..+.|++
T Consensus 38 Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~e~~p~~i~~e~l~~l~~ 116 (375)
T PRK05628 38 YLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGA-EVTTEANPESTSPEFFAALRA 116 (375)
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHH
Confidence 44555555443 222 2345788885 999988888777766655433333233 5777854 357889999999
Q ss_pred cCCceeeeecCCCCCC---CcCCcchhhHHHHHHHHHHHHhccCC
Q 010452 213 SKLRTIHVGVDQKMPA---SWGGRHQLEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 213 SGL~ytHL~~~~~~p~---~~~~r~~~~~~qRN~AL~~IR~~~~~ 254 (510)
.|+...+|++..--+. .....+..+ +=..|++.+++...+
T Consensus 117 ~G~~rvslGvQS~~~~~L~~l~R~~s~~--~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 117 AGFTRVSLGMQSAAPHVLAVLDRTHTPG--RAVAAAREARAAGFE 159 (375)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHH--HHHHHHHHHHHcCCC
Confidence 9999999998642111 111112222 223577788886544
No 61
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=34.77 E-value=2.5e+02 Score=29.32 Aligned_cols=107 Identities=8% Similarity=-0.051 Sum_probs=55.2
Q ss_pred CCCCcEEEEEcccCCcchhhHHHHhhhhhccCCC-CCeEEEEEeCCCC--CHHH-HHHHhhc-CCceeeeecCCCCCCCc
Q 010452 156 FKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGV--TNET-ASLIAKS-KLRTIHVGVDQKMPASW 230 (510)
Q Consensus 156 ~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp-~~LhWIVVEd~~~--T~~v-a~lL~rS-GL~ytHL~~~~~~p~~~ 230 (510)
....|.|-||-|+|.......+. -.+|..-. +++--|||.|++. |..+ .++.++. ++..+.+..+ -+.+|
T Consensus 37 ~~~~p~VSViiP~~nee~~l~~~---L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~--~~~G~ 111 (373)
T TIGR03472 37 PRAWPPVSVLKPLHGDEPELYEN---LASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA--RRHGP 111 (373)
T ss_pred CCCCCCeEEEEECCCCChhHHHH---HHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC--CCCCC
Confidence 34568899999999986655432 22222222 2466677766642 2232 2332322 2222323211 12222
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
.. +. ++..+-+ ++...-+|.|.|+|...+.+..++|-
T Consensus 112 ~~--K~-----~~l~~~~-~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 112 NR--KV-----SNLINML-PHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred Ch--HH-----HHHHHHH-HhccCCEEEEECCCCCcChhHHHHHH
Confidence 11 11 1111112 23345689999999999988887763
No 62
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=34.58 E-value=44 Score=33.52 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHhc---cCCeEEEEecCCCccchhhhhhhhcee
Q 010452 243 RALRIVREE---KLDGIVMFADDSNMHSMELFDEIQNVK 278 (510)
Q Consensus 243 ~AL~~IR~~---~~~GVVYFADDDNtYdl~LFdEmR~tr 278 (510)
.||+.|.++ ..+.||||+||.| |.+.|..++...
T Consensus 177 ~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~~ 213 (266)
T PRK10187 177 EAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRLG 213 (266)
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhcC
Confidence 477777665 3467999999888 888898876544
No 63
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=42 Score=28.69 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhheee
Q 010452 38 IFWLVLHGLCCLISLVLGFRFSRLVF 63 (510)
Q Consensus 38 ~~wl~lh~~~c~~sl~lgfrfsrl~~ 63 (510)
++|+++=.+|-++.+++||=+||=.+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999987543
No 64
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=32.78 E-value=28 Score=28.93 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=18.5
Q ss_pred CCHHHHHHHhhcCCceeeeec
Q 010452 202 VTNETASLIAKSKLRTIHVGV 222 (510)
Q Consensus 202 ~T~~va~lL~rSGL~ytHL~~ 222 (510)
+.+.+..||...||.|||.+-
T Consensus 24 k~d~I~aiL~~~gV~YtH~N~ 44 (61)
T PF14773_consen 24 KHDPIQAILASAGVEYTHSNQ 44 (61)
T ss_pred cccHHHHHHhhcceeeeecCc
Confidence 456899999999999999974
No 65
>PF15050 SCIMP: SCIMP protein
Probab=32.04 E-value=37 Score=31.82 Aligned_cols=19 Identities=42% Similarity=0.840 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 010452 38 IFWLVLHGLCCLISLVLGF 56 (510)
Q Consensus 38 ~~wl~lh~~~c~~sl~lgf 56 (510)
-||++|-....++|++||+
T Consensus 7 nFWiiLAVaII~vS~~lgl 25 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGL 25 (133)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3899998888889999985
No 66
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=31.94 E-value=29 Score=28.44 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCc--cch----hhhhhhhce
Q 010452 240 MRLRALRIVREEKLDGIVMFADDSNM--HSM----ELFDEIQNV 277 (510)
Q Consensus 240 qRN~AL~~IR~~~~~GVVYFADDDNt--Ydl----~LFdEmR~t 277 (510)
|=-.||+|| .+.|+||.|-.++ |++ .||+|||..
T Consensus 5 qai~AL~hL----~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 5 QAITALAHL----ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp HHHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 445677665 4689999999887 764 689998854
No 67
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.42 E-value=4.7e+02 Score=26.58 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=55.5
Q ss_pred ccCCCCCCChHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCC
Q 010452 124 RIRPWPHPNPTEVMKAHKIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVT 203 (510)
Q Consensus 124 ~irpwphp~p~e~~~ah~i~ervQ~eqr~~~g~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T 203 (510)
..++|+|.++ ....+++.+.+.-...+|.++....|++|+.-. ..|..++..|.. +.. .-||+.++.-.
T Consensus 22 ~~~~~~~~~~----~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t-----~al~~~~~~l~~-~~~-~vlv~~~~~~~ 90 (363)
T TIGR02326 22 MLFDWCTWDS----DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGT-----FAVEAVIGSAVP-KDG-KLLVVINGAYG 90 (363)
T ss_pred hCCCCCCCCh----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCH-----HHHHHHHHhcCC-CCC-eEEEEeCChhh
Confidence 4568888764 345578888888888899865555666666543 234455555532 323 44555555443
Q ss_pred HHHHHHHhhcCCceeeeecC
Q 010452 204 NETASLIAKSKLRTIHVGVD 223 (510)
Q Consensus 204 ~~va~lL~rSGL~ytHL~~~ 223 (510)
.....+.++.|++.+.+.+.
T Consensus 91 ~~~~~~a~~~g~~~~~v~~~ 110 (363)
T TIGR02326 91 ARIVQIAEYLGIPHHVVDTG 110 (363)
T ss_pred HHHHHHHHHcCCceEEEeCC
Confidence 33457778888887777543
No 68
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=29.71 E-value=3.8e+02 Score=28.61 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=57.6
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCC---CCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCC----CCCC--CcCCcc
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVP---YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQ----KMPA--SWGGRH 234 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp---~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~----~~p~--~~~~r~ 234 (510)
||=.||.|+. +|.|.-.+|.... .+..=||..||+..+ ++++++.-+...+|+.... ++.. .+..-.
T Consensus 4 Vlv~ayNRp~---~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 4 VLVIACNRPD---YLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-VADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred EEEEecCCHH---HHHHHHHHHHhccccCCCceEEEEeCCCchH-HHHHHHhhccccEEEEcccccccccCcccccchhh
Confidence 3445678852 4555555555541 135568888987543 5666655533444543211 1110 000000
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhce
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~t 277 (510)
.+ ...--.||.++=++...+-|.|-|||-.-+.++|+-|.+.
T Consensus 80 ~i-a~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~ 121 (334)
T cd02514 80 RI-ARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQAT 121 (334)
T ss_pred HH-HHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHH
Confidence 01 1112247777755545677788899999888877665544
No 69
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=27.69 E-value=6e+02 Score=27.54 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=54.8
Q ss_pred CcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCC---CcCCcch
Q 010452 159 PRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPA---SWGGRHQ 235 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~---~~~~r~~ 235 (510)
.+.|+++-.|..- -...+..|+..|... .+.|..--....+.++.++|+++|+...++++..--+. ...+...
T Consensus 246 ~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~ 321 (472)
T TIGR03471 246 VREFFFDDDTFTD--DKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT 321 (472)
T ss_pred CcEEEEeCCCCCC--CHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC
Confidence 3678888766542 123455566656544 47786422234678899999999999999998743221 1111111
Q ss_pred hhHHHHHHHHHHHHhccCC
Q 010452 236 LEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~ 254 (510)
. .+-..+++.++++...
T Consensus 322 ~--~~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 322 V--EIARRFTRDCHKLGIK 338 (472)
T ss_pred H--HHHHHHHHHHHHCCCe
Confidence 2 2445688888887553
No 70
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=26.97 E-value=6.5e+02 Score=26.37 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCcEEEE--EcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCC--CCCHHHHHHHhhcCCceeeeecCCCCCCC--c
Q 010452 157 KNPRTLIV--VTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAG--GVTNETASLIAKSKLRTIHVGVDQKMPAS--W 230 (510)
Q Consensus 157 ~~~~~Iiv--VTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~--~~T~~va~lL~rSGL~ytHL~~~~~~p~~--~ 230 (510)
..-+.||+ =|||.-.+.+..+|.+..+-.-.+....- |-+|.. ..+.+..+.|++.|+...++++..--+.. .
T Consensus 50 ~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~ 128 (377)
T PRK08599 50 DKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEE-FTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKK 128 (377)
T ss_pred CceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 44566776 58997666666666555544322332223 455744 35789999999999999999986421110 1
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCe
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLDG 255 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~G 255 (510)
..+.. ...+...|++.+++.....
T Consensus 129 l~r~~-~~~~~~~~i~~l~~~g~~~ 152 (377)
T PRK08599 129 IGRTH-NEEDVYEAIANAKKAGFDN 152 (377)
T ss_pred cCCCC-CHHHHHHHHHHHHHcCCCc
Confidence 11211 1235678899998876543
No 71
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=25.38 E-value=4.1e+02 Score=27.78 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCcEEEEE--cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhcCCceeeeecCCCCCC--CcC
Q 010452 158 NPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPA--SWG 231 (510)
Q Consensus 158 ~~~~IivV--TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~--~T~~va~lL~rSGL~ytHL~~~~~~p~--~~~ 231 (510)
..++||+- |||.-.+.|..+|.....-. +. .-.-|-+|... .+.+..+.|++.|+....|++..--+. ...
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l 127 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY--LS-KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL 127 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh--cC-CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 45788885 99999888888777666544 43 23467889553 478999999999999999998631111 111
Q ss_pred CcchhhHHHHHHHHHHHHhccCC
Q 010452 232 GRHQLEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~ 254 (510)
.|.+. ..+=..|++.+|+...+
T Consensus 128 gR~~~-~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 128 GRIHS-QKQIIKAIENAKKAGFE 149 (350)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCC
Confidence 22211 11234577788887544
No 72
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=25.36 E-value=3.9e+02 Score=29.44 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=52.9
Q ss_pred cEEEEE--cccCCcchhhHHHHhhhhhccCC-CCCeEEEEE---eCCCCCHHHHHHHhhcCCceeeeecCCCCCC---Cc
Q 010452 160 RTLIVV--TPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVV---EAGGVTNETASLIAKSKLRTIHVGVDQKMPA---SW 230 (510)
Q Consensus 160 ~~IivV--TPTY~R~~Q~a~LTRLahTL~lV-p~~LhWIVV---Ed~~~T~~va~lL~rSGL~ytHL~~~~~~p~---~~ 230 (510)
+.|+++ ++|..+ ..+..|++.|.-- |-++.|..- ++-..+.+..++|+++|+....+++..--+. ..
T Consensus 241 ~~~~~~Dd~f~~~~----~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~ 316 (497)
T TIGR02026 241 GFFILADEEPTINR----KKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHF 316 (497)
T ss_pred CEEEEEecccccCH----HHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHh
Confidence 455555 445433 2456666666533 235888642 2222367889999999999999998743221 11
Q ss_pred CCcchhhHHHHHHHHHHHHhccCC
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~ 254 (510)
.+.+. ..+-..|++.++++...
T Consensus 317 ~K~~t--~~~~~~ai~~l~~~Gi~ 338 (497)
T TIGR02026 317 RKGTT--TSTNKEAIRLLRQHNIL 338 (497)
T ss_pred cCCCC--HHHHHHHHHHHHHCCCc
Confidence 11222 23556799999998653
No 73
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=22.90 E-value=6.4e+02 Score=25.88 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=60.9
Q ss_pred EEcccCCcchhhHHHHhhh-hhccCCCCCeEEEEEeCCCC--CHHHHHHHhh-cCCceeeeecCCCCCCCcCCcchhhHH
Q 010452 164 VVTPTYVRTFQTLHLTGVM-HSLMLVPYDLVWIVVEAGGV--TNETASLIAK-SKLRTIHVGVDQKMPASWGGRHQLEAK 239 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLa-hTL~lVp~~LhWIVVEd~~~--T~~va~lL~r-SGL~ytHL~~~~~~p~~~~~r~~~~~~ 239 (510)
||-|||.--.-.+-+|||- .++..---+.-=|+|+|++. |-++++.|++ -|..-.-|-... ...++
T Consensus 7 vilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~-------~klGL--- 76 (238)
T KOG2978|consen 7 VILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRT-------KKLGL--- 76 (238)
T ss_pred EEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEecc-------Ccccc---
Confidence 7889999766666778875 45543322456689999964 7789998886 444433332211 11122
Q ss_pred HHHHHHHHHH--hccCCeEEEEecCCCccchhhhhhhhc
Q 010452 240 MRLRALRIVR--EEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 240 qRN~AL~~IR--~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
+-+||. +|...-.+..+|.|=.+..+..-||=+
T Consensus 77 ----gtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~ 111 (238)
T KOG2978|consen 77 ----GTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIR 111 (238)
T ss_pred ----hHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHH
Confidence 222332 344445778889999988888777433
No 74
>PRK07094 biotin synthase; Provisional
Probab=22.83 E-value=7.3e+02 Score=25.26 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=51.9
Q ss_pred cEEEEE---cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcC--Ccc
Q 010452 160 RTLIVV---TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWG--GRH 234 (510)
Q Consensus 160 ~~IivV---TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~--~r~ 234 (510)
+.|+++ .|.+. ..++..+...++..+ ++ .|-+.-+..+.+..+.|++.|+...++++..--+..+. .+
T Consensus 88 ~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~-~l-~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~- 160 (323)
T PRK07094 88 RTIVLQSGEDPYYT----DEKIADIIKEIKKEL-DV-AITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHP- 160 (323)
T ss_pred CEEEEecCCCCCCC----HHHHHHHHHHHHccC-Cc-eEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-
Confidence 455555 34443 235566666665532 33 23334456788999999999999888887643221111 11
Q ss_pred hhhHHHHHHHHHHHHhccC
Q 010452 235 QLEAKMRLRALRIVREEKL 253 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~ 253 (510)
.....++..+++++++...
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 161 GMSFENRIACLKDLKELGY 179 (323)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 1122468889999988754
No 75
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=21.65 E-value=50 Score=27.25 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=11.1
Q ss_pred cceecCCCcEEE
Q 010452 317 GPACNSSNNLVG 328 (510)
Q Consensus 317 GPvcn~sGkVvG 328 (510)
||++|.+|+|+|
T Consensus 108 gpv~~~~G~vvG 119 (120)
T PF13365_consen 108 GPVFDSDGRVVG 119 (120)
T ss_dssp SEEEETTSEEEE
T ss_pred HhEECCCCEEEe
Confidence 899999999998
No 76
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.35 E-value=72 Score=36.72 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEe---CCC-CCHHHHHHHhhcCC
Q 010452 141 KIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVE---AGG-VTNETASLIAKSKL 215 (510)
Q Consensus 141 ~i~ervQ~eqr~~~g~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVE---d~~-~T~~va~lL~rSGL 215 (510)
-|++++|.-+...- -..-+..+||-||..=..|.+|. +|+| +. ++||||=- -|+ +..+-|+|=+.++|
T Consensus 194 PiVq~Lq~m~~ki~-Rs~G~~ALVivPTREL~~Q~y~~---~qKL--l~-~~hWIVPg~lmGGEkkKSEKARLRKGiNI 265 (708)
T KOG0348|consen 194 PIVQSLQAMEPKIQ-RSDGPYALVIVPTRELALQIYET---VQKL--LK-PFHWIVPGVLMGGEKKKSEKARLRKGINI 265 (708)
T ss_pred HHHHHHHhcCcccc-ccCCceEEEEechHHHHHHHHHH---HHHH--hc-CceEEeeceeecccccccHHHHHhcCceE
Confidence 34555554433322 33457788999999989999984 5555 44 59999743 334 34577776555443
No 77
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=21.33 E-value=5.8e+02 Score=28.43 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=70.1
Q ss_pred CCCcEEEEEcccCCc-chhhH-HHHhhhhhccCCCCCeEEEEEeCCC--CCH-------HHHHHHhhc-CCceeeeecC-
Q 010452 157 KNPRTLIVVTPTYVR-TFQTL-HLTGVMHSLMLVPYDLVWIVVEAGG--VTN-------ETASLIAKS-KLRTIHVGVD- 223 (510)
Q Consensus 157 ~~~~~IivVTPTY~R-~~Q~a-~LTRLahTL~lVp~~LhWIVVEd~~--~T~-------~va~lL~rS-GL~ytHL~~~- 223 (510)
.+..+|.+|-|-..| ..... -|....+.-+.-..+++=+||=.++ .+. .+.++-++. +..+.-+.++
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~ 323 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKT 323 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecC
Confidence 345899999999999 33222 2333333322224456666665432 121 233333343 3344555444
Q ss_pred CCCCCCcCCcchhhHHHHHHHHHHH-HhccCCeEEEEecCCCccchhhhhhhhc--eeeEeE-EEeeEE
Q 010452 224 QKMPASWGGRHQLEAKMRLRALRIV-REEKLDGIVMFADDSNMHSMELFDEIQN--VKWFGA-VSVGIL 288 (510)
Q Consensus 224 ~~~p~~~~~r~~~~~~qRN~AL~~I-R~~~~~GVVYFADDDNtYdl~LFdEmR~--tr~vgv-WPVGlv 288 (510)
.. --|-.||+-. +....+-+|+|+|-|=.+..++++.+|. ++..-| .||.+-
T Consensus 324 ~~-------------fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs 379 (499)
T PF05679_consen 324 GE-------------FSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFS 379 (499)
T ss_pred CC-------------ccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeecc
Confidence 11 1356677755 3446789999999999999999999875 555444 377664
No 78
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=21.18 E-value=1.5e+02 Score=22.81 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+++..+=+.++.+.+++....|......+|..+.++|+.+
T Consensus 41 Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 41 GIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp SHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4555566788888888888999999999999999999865
No 79
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.29 E-value=1.1e+03 Score=25.31 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcC-CCCCCcEEEEE--cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCC--CCCHHHHHHHhhcCCc
Q 010452 142 IIERVQREQRAHF-GFKNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAG--GVTNETASLIAKSKLR 216 (510)
Q Consensus 142 i~ervQ~eqr~~~-g~~~~~~IivV--TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~--~~T~~va~lL~rSGL~ 216 (510)
-++.+.+|-+... ......+||+- |||.-.+.|..+|....+-.-.+. .-.-|=+|.. ..+.+..+.|++.|+.
T Consensus 49 Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~-~~~eit~E~~P~~lt~e~l~~l~~~Gvn 127 (400)
T PRK07379 49 YVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIA-PDAEISLEIDPGTFDLEQLQGYRSLGVN 127 (400)
T ss_pred HHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCCCC
Confidence 4555655554311 11234677774 999886665555444443221222 1235888955 3578889999999999
Q ss_pred eeeeecCCCCCC--CcCCcchhhHHHHHHHHHHHHhccCCe
Q 010452 217 TIHVGVDQKMPA--SWGGRHQLEAKMRLRALRIVREEKLDG 255 (510)
Q Consensus 217 ytHL~~~~~~p~--~~~~r~~~~~~qRN~AL~~IR~~~~~G 255 (510)
...|++..--+. ....|.+ ...+-..|++.+++...+-
T Consensus 128 rislGvQS~~d~~L~~l~R~~-~~~~~~~ai~~l~~~G~~~ 167 (400)
T PRK07379 128 RVSLGVQAFQDELLALCGRSH-RVKDIFAAVDLIHQAGIEN 167 (400)
T ss_pred EEEEEcccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCe
Confidence 999998632111 1112222 1235567888998876553
Done!