Query 010452
Match_columns 510
No_of_seqs 146 out of 281
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v84_A Galactosylgalactosylxyl 100.0 5.1E-87 1.7E-91 654.8 13.6 238 159-441 2-253 (253)
2 2d0j_A Galactosylgalactosylxyl 100.0 7.8E-84 2.7E-88 630.1 16.5 238 158-441 1-246 (246)
3 3cu0_A Galactosylgalactosylxyl 100.0 1E-83 3.6E-88 637.9 13.0 240 155-441 16-281 (281)
4 1qg8_A Protein (spore coat pol 96.4 0.013 4.5E-07 53.4 9.0 104 160-274 1-109 (255)
5 3bcv_A Putative glycosyltransf 95.6 0.063 2.1E-06 48.2 10.0 98 158-274 3-105 (240)
6 3f1y_A Mannosyl-3-phosphoglyce 95.0 0.043 1.5E-06 56.1 7.4 107 159-274 93-201 (387)
7 4fix_A UDP-galactofuranosyl tr 94.6 0.11 3.6E-06 56.8 9.7 104 158-274 178-289 (657)
8 2z86_A Chondroitin synthase; G 93.2 0.23 7.8E-06 52.1 8.7 100 157-274 90-195 (625)
9 1xhb_A Polypeptide N-acetylgal 93.0 0.081 2.8E-06 53.6 4.9 113 157-284 26-149 (472)
10 2ffu_A Ppgalnact-2, polypeptid 92.6 0.31 1.1E-05 50.0 8.6 102 157-274 63-167 (501)
11 3ckj_A Putative uncharacterize 92.4 0.38 1.3E-05 46.9 8.5 105 158-274 46-153 (329)
12 3l7i_A Teichoic acid biosynthe 90.4 0.051 1.7E-06 58.9 0.0 97 160-275 2-105 (729)
13 2z86_A Chondroitin synthase; G 90.3 1.3 4.4E-05 46.5 10.5 97 158-274 373-475 (625)
14 2d7i_A Polypeptide N-acetylgal 89.1 0.37 1.3E-05 51.0 5.3 99 158-273 110-216 (570)
15 4hg6_A Cellulose synthase subu 88.3 0.99 3.4E-05 50.0 8.3 101 158-274 138-259 (802)
16 2bo4_A Mannosylglycerate synth 78.6 7.6 0.00026 40.0 9.4 102 163-274 3-114 (397)
17 1fo8_A Alpha-1,3-mannosyl-glyc 76.9 19 0.00064 36.5 11.5 108 164-276 6-122 (343)
18 2fy7_A Beta-1,4-galactosyltran 59.3 19 0.00065 35.1 7.0 82 158-269 63-145 (287)
19 2wvl_A Mannosyl-3-phosphoglyce 55.8 7.7 0.00026 40.6 3.7 38 160-202 53-90 (391)
20 1ear_A Urease accessory protei 32.3 89 0.003 28.0 6.4 59 158-228 74-138 (147)
21 3nrf_A APAG protein; structura 30.3 16 0.00054 32.0 1.1 18 253-270 80-98 (106)
22 3tj8_A Urease accessory protei 27.0 1.1E+02 0.0036 28.3 6.0 55 159-223 77-139 (170)
23 2j48_A Two-component sensor ki 23.0 1.2E+02 0.0041 22.6 4.8 76 195-288 5-81 (119)
24 2nxv_A ATP synthase subunits r 22.9 2.2E+02 0.0075 26.1 7.5 32 240-275 65-96 (249)
25 3cg4_A Response regulator rece 22.8 1.9E+02 0.0065 22.9 6.2 79 193-289 9-88 (142)
26 1olt_A Oxygen-independent copr 20.6 2.6E+02 0.009 28.5 8.2 94 159-254 105-204 (457)
27 2pln_A HP1043, response regula 20.5 1E+02 0.0036 24.4 4.2 61 195-277 22-83 (137)
No 1
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=5.1e-87 Score=654.78 Aligned_cols=238 Identities=32% Similarity=0.459 Sum_probs=208.3
Q ss_pred CcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhcCCceeeeecCCCCCCCc-------
Q 010452 159 PRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASW------- 230 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~-~T~~va~lL~rSGL~ytHL~~~~~~p~~~------- 230 (510)
.|+||||||||.|++|+||||||||||+||| +||||||||++ +|++|++||++|||+|+||++++ |.++
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~--p~~~~~~~~~~ 78 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVET--PRNYKLRGDAR 78 (253)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCC--CHHHHCC----
T ss_pred CCEEEEEeCCCCccchhHHHHHHhhhhccCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCC--Ccccccccccc
Confidence 6999999999999999999999999999998 89999999986 69999999999999999999974 3222
Q ss_pred CCcchhhHHHHHHHHHHHHhc-----cCCeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREE-----KLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKE 305 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~-----~~~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~ 305 (510)
..++..+..|||+||+|||+| +++||||||||||+||+|||||||+||+||+||||++ ||.
T Consensus 79 ~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglv---g~~----------- 144 (253)
T 1v84_A 79 DPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFV---GGL----------- 144 (253)
T ss_dssp ---CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESC---TTS-----------
T ss_pred CccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEee---cCc-----------
Confidence 222234567999999999984 6899999999999999999999999999999999999 654
Q ss_pred cCCCCCccceecceecCCCcEEEEEecCCCcccccccccccccccCCCccccccccchhhhcccccccCCCccccccccc
Q 010452 306 EGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLL 385 (510)
Q Consensus 306 e~~~~~~~~vEGPvcn~sGkVvGWht~~~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~~rp~~i~dld~~ 385 (510)
.+|||+|+++|||+|||+.|. +.|||||||||||||+++||+.+++. .+.+++
T Consensus 145 --------~~EgPv~~~~gkVvGw~~~w~---------------~~R~fpiDmAGFA~N~~lll~~p~a~----~~~~~~ 197 (253)
T 1v84_A 145 --------RYEAPRVNGAGKVVRWKTVFD---------------PHRPFAIDMAGFAVNLRLILQRSQAY----FKLRGV 197 (253)
T ss_dssp --------SEEEEEECTTSCEEEEECSSC---------------TTSTTCCCGGGEEEEHHHHHHSTTCC----CCSSSS
T ss_pred --------ceecCeECCCCCEeeeecccC---------------CCCCccceeeeeEEEehhhhhCCCce----eccccC
Confidence 599999998899999999874 67899999999999999888755443 334555
Q ss_pred CCcccccc-cccccCCCCcccccCCCCCEEEEEeccccCCCCCCCCCCCccCCCcee
Q 010452 386 DGLEDIES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSDSKFPPGWIIDPPLEI 441 (510)
Q Consensus 386 ~~~~~iES-~LslL~D~s~lEPla~cc~kVLVWHtRtE~p~d~kyP~~W~id~~Lev 441 (510)
++ +++|| +|+.|.+.++|||+|+||++|||||||||+|...++|+.|.+|+++||
T Consensus 198 ~~-g~~Es~fL~~l~~~~~lEp~~~~C~~VlvWHtrte~p~~~~e~~~~~~~~~~e~ 253 (253)
T 1v84_A 198 KG-GYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI 253 (253)
T ss_dssp CT-TCHHHHHHHHHCCGGGEEECHHHHTSCCEECCCBCCCCCGGGTTTCSSCTTSCC
T ss_pred CC-cchhhHHHHhhhhHhhcEecCCCCCEEEEEecccCCcccccccccccCCCCccC
Confidence 44 46776 676666889999999999999999999999999999999999999997
No 2
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-84 Score=630.14 Aligned_cols=238 Identities=25% Similarity=0.391 Sum_probs=202.4
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhcCCceeeeecCCCCCCCcCCcc-h
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRH-Q 235 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~-~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~-~ 235 (510)
+.|+||||||||.|++|+|||||||||||||| +||||||||++ .+++|++||++|||+|+||++++ |.+++..+ .
T Consensus 1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~--~~~~~~~~~p 77 (246)
T 2d0j_A 1 QLPTIYAITPTYSRPVQKAELTRLANTFRQVA-QLHWILVEDAAARSELVSRFLARAGLPSTHLHVPT--PRRYKRPGLP 77 (246)
T ss_dssp CCCCEEEEEEECCSTTHHHHHHHHHHHHTTST-TEEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCC--CCC----CCC
T ss_pred CCCEEEEEeCCCCccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCC--ccccCCCCCc
Confidence 36899999999999999999999999999999 69999999997 56789999999999999999974 44454322 2
Q ss_pred hhHHHHHHHHHHHHhccC-----CeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCCCccchhhhhhhhcCCCC
Q 010452 236 LEAKMRLRALRIVREEKL-----DGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGEN 310 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~-----~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg~~~~~~~~~~~~e~~~~ 310 (510)
.+..|||.||+|||+|++ +||||||||||+||++||||||+||+||+||||++ ||.
T Consensus 78 rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglv---g~~---------------- 138 (246)
T 2d0j_A 78 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLV---GGR---------------- 138 (246)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEE---TTE----------------
T ss_pred chHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEee---cCc----------------
Confidence 334799999999999975 79999999999999999999999999999999999 653
Q ss_pred CccceecceecCCCcEEEEEecCCCcccccccccccccccCCCccccccccchhhhcccccccCCCcccccccccCCccc
Q 010452 311 TAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLED 390 (510)
Q Consensus 311 ~~~~vEGPvcn~sGkVvGWht~~~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~~rp~~i~dld~~~~~~~ 390 (510)
.+|||+|+ +|||+|||+.|. ++|||||||||||||+++||+++++.+ +. ...++ ++
T Consensus 139 ---~~EgPv~~-~gkVvGw~t~w~---------------~~R~fpiDmAGFA~N~~lll~~p~a~~---~~-~~~~~-g~ 194 (246)
T 2d0j_A 139 ---RYERPLVE-NGKVVGWYTGWR---------------ADRPFAIDMAGFAVSLQVILSNPKAVF---KR-RGSQP-GM 194 (246)
T ss_dssp ---EEEEEEEE-TTEEEEEECSSC---------------TTSTTCCCGGGEEEEHHHHHHCTTCCC---CT-TSSSG-GG
T ss_pred ---ceecceee-CCEecceecccC---------------CCCcCcccceeeEeehhhhhcCccccc---cc-CCCCC-Cc
Confidence 59999999 789999999873 678999999999999998876655422 21 12222 46
Q ss_pred ccc-cccccCCCCcccccCCCCCEEEEEeccccCCCCCCCCCCCccCCCcee
Q 010452 391 IES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSDSKFPPGWIIDPPLEI 441 (510)
Q Consensus 391 iES-~LslL~D~s~lEPla~cc~kVLVWHtRtE~p~d~kyP~~W~id~~Lev 441 (510)
+|+ +|+.|.|.++|||+|+||++|||||||||+|...+.++....++.+||
T Consensus 195 ~Es~fL~~l~~~~~lEp~~~~c~~VlvWhtrte~~~l~~e~~~~~~~~~~~~ 246 (246)
T 2d0j_A 195 QESDFLKQITTVEELEPKANNCTKVLVWHTRTEKVNLANEPKYHLDTVKIEV 246 (246)
T ss_dssp HHHHHHHTTCCGGGCEECHHHHTCCCEECCCBCCCCCTTCCSSSCCSSCCCC
T ss_pred hhhHHHHHhccHhhceeccCCCCEEEEEeccccCcccccccccCCCCCceeC
Confidence 777 677777889999999999999999999999988888888877778775
No 3
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=1e-83 Score=637.95 Aligned_cols=240 Identities=31% Similarity=0.438 Sum_probs=198.8
Q ss_pred CCCCCcEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhcCCceeeeecCCCC-------
Q 010452 155 GFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKM------- 226 (510)
Q Consensus 155 g~~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~-~T~~va~lL~rSGL~ytHL~~~~~~------- 226 (510)
+.++.|+||||||||.|++|+||||||||||+||| +||||||||++ .|++|++||++|||+|+||+++++.
T Consensus 16 ~~~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~rsGl~y~HL~~~~p~~~~~~~~ 94 (281)
T 3cu0_A 16 PRGSHMTIYVVTPTYARLVQKAELVRLSQTLSLVP-RLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREG 94 (281)
T ss_dssp -----CEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCSEEEEEECCCC--------
T ss_pred cCCCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEeccCCCcccccccc
Confidence 34577999999999999999999999999999999 89999999985 6999999999999999999997431
Q ss_pred CCCcCCcchhhHHHHHHHHHHHH--------hcc-----CCeEEEEecCCCccchhhhhhhhceeeEeEEEeeEEeecCC
Q 010452 227 PASWGGRHQLEAKMRLRALRIVR--------EEK-----LDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGN 293 (510)
Q Consensus 227 p~~~~~r~~~~~~qRN~AL~~IR--------~~~-----~~GVVYFADDDNtYdl~LFdEmR~tr~vgvWPVGlv~~~Gg 293 (510)
.+.|..+++ ..|||+||+||| +|. ++||||||||||+||++||||||+||+||+||||++ ||
T Consensus 95 dp~w~~~rg--~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlv---gg 169 (281)
T 3cu0_A 95 EPGWVHPRG--VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLV---GG 169 (281)
T ss_dssp ---CCCCCS--HHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEE---TT
T ss_pred ccccccchh--HHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeecc---cc
Confidence 123444444 479999999999 663 689999999999999999999999999999999999 65
Q ss_pred CccchhhhhhhhcCCCCCccceecceecCCCcEEEEEecCCCcccccccccccccccCCCccccccccchhhhccccccc
Q 010452 294 QDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAK 373 (510)
Q Consensus 294 ~~~~~~~~~~~~e~~~~~~~~vEGPvcn~sGkVvGWht~~~lp~~~~sa~~~~drap~rpfpIDMAGFA~NsrLLw~~~~ 373 (510)
+ .||||+|+ +|||+|||+.|. +.|||||||||||||+++||++++
T Consensus 170 ~-------------------~vEgPvc~-~gkVvGw~t~w~---------------~~R~fpiDMAGFA~N~~lL~~~p~ 214 (281)
T 3cu0_A 170 L-------------------RFEGPQVQ-DGRVVGFHTAWE---------------PSRPFPVDMAGFAVALPLLLDKPN 214 (281)
T ss_dssp E-------------------EEEEEEEE-TTEEEEEECCSS---------------TTCSSCCCGGGEEEEHHHHHHCTT
T ss_pred c-------------------eeEEEEEe-CCEEeeeeccCC---------------CCCCCccccceeEeehhhhhcCCc
Confidence 3 69999999 789999999884 678999999999999999998766
Q ss_pred CCCcccccccccCCcccccc-cccccCCCCcccccCCCCCEEEEEeccccCCCCCC----CCCCCccCCCcee
Q 010452 374 DKPEWVNDLDLLDGLEDIES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSDSK----FPPGWIIDPPLEI 441 (510)
Q Consensus 374 ~rp~~i~dld~~~~~~~iES-~LslL~D~s~lEPla~cc~kVLVWHtRtE~p~d~k----yP~~W~id~~Lev 441 (510)
+.+. .+.. + +++|| +|+.|.+.++|||+|+||++|||||||||+|.... --+|-..|+.+||
T Consensus 215 a~f~----~~~~-~-G~qEs~fL~~lv~~~~lEp~~~~c~~VlVWHtrte~p~l~~e~~~~~~g~~~~~~~e~ 281 (281)
T 3cu0_A 215 AQFD----STAP-R-GHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV 281 (281)
T ss_dssp CCCC----TTSC-T-TCHHHHHHTTTCCGGGCEECHHHHTCCCEECCCBCCCCCHHHHHHHTTTCCCCTTSCC
T ss_pred cccc----CCCC-C-cchhhHHHHHhccHhhcEecCCCCCEEEEEecccCCCccCcHHHHHHhCCCCCCCCcC
Confidence 5442 2222 2 46777 66766789999999999999999999999984221 1245667777774
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.36 E-value=0.013 Score=53.36 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=61.5
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCCCHHHHHHHhhc----CCceeeeecCCCCCCCcCCcc
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGVTNETASLIAKS----KLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~-lVp~~LhWIVVEd~~~T~~va~lL~rS----GL~ytHL~~~~~~p~~~~~r~ 234 (510)
|.|-||+|||.+.. .|.+.-.+|. +--+++-.|||+|++. +.+.+++++. ++.+.+..... ......+.
T Consensus 1 p~vSViIp~yn~~~---~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~-~~~~~~n~- 74 (255)
T 1qg8_A 1 PKVSVIMTSYNKSD---YVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISG-VKERTEKT- 74 (255)
T ss_dssp CCEEEEEEESSCTT---THHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCS-HHHHHSSC-
T ss_pred CeEEEEEEcCCCHH---HHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEeccccc-cccccccc-
Confidence 56889999999863 2333333332 2222789999999863 5566666654 44443332100 00000112
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+. ...||.|++.. ..-+|.|.|+|..++.+.++++
T Consensus 75 G~-~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 75 RY-AALINQAIEMA----EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HH-HHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHH
T ss_pred CH-HHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHH
Confidence 22 24699999764 3348999999999988877664
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.65 E-value=0.063 Score=48.23 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCC--CHH-HHHHHhh-cCCceeeeecCCCCCCCcCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGV--TNE-TASLIAK-SKLRTIHVGVDQKMPASWGG 232 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~-lVp~~LhWIVVEd~~~--T~~-va~lL~r-SGL~ytHL~~~~~~p~~~~~ 232 (510)
..|.|-||.|||.+... |.+.-.+|. +--+++-.|||+|++. |.. +.++.++ .++.+.| ..+
T Consensus 3 ~~p~vsViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~---~~n------- 69 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKY---LDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH---KKN------- 69 (240)
T ss_dssp CCCSEEEEEEESSCTTT---HHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE---CCC-------
T ss_pred CCCcEEEEEecCCCHHH---HHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE---CCC-------
Confidence 35789999999998633 333333322 2223789999999863 322 2233322 2344333 222
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
.+. ...||.||+.. ..-+|.|.|+|..++...+++|
T Consensus 70 ~G~--~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l 105 (240)
T 3bcv_A 70 AGL--GMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTM 105 (240)
T ss_dssp CCH--HHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHH
T ss_pred CCh--HHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHH
Confidence 222 24699999864 2358999999999998888775
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=94.95 E-value=0.043 Score=56.06 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=67.7
Q ss_pred CcEEEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhh
Q 010452 159 PRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLE 237 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~ 237 (510)
.|.|-||.|||........ |..|...|...+.+...|||+|+++ +.|.+++++.+..+.+-... +...-.+.+..
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~--~i~~~~n~G~g- 168 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENEL--MSGYGDAHGKG- 168 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGT--TGGGCSCCSHH-
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhccccee--EecCCccCCHH-
Confidence 4789999999998654443 4455544445555789999999864 44667777777665442210 10000122222
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 010452 238 AKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (510)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVYFADDDNt-Ydl~LFdEm 274 (510)
..+|.|+++. ..-+|.|.|.|.. ++.+.+++|
T Consensus 169 -~A~n~G~~~A----~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 169 -DAMWRALSVT----RGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp -HHHHHHTTTC----CSSEEEECCTTCSSCCTHHHHTT
T ss_pred -HHHHHHHHhc----CCCEEEEEcCCCCcCCHHHHHHH
Confidence 3688898664 2348999999999 888776653
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=94.61 E-value=0.11 Score=56.80 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=68.4
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCCC----CCeEEEEEeCCCC----CHHHHHHHhhcCCceeeeecCCCCCCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVP----YDLVWIVVEAGGV----TNETASLIAKSKLRTIHVGVDQKMPAS 229 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lVp----~~LhWIVVEd~~~----T~~va~lL~rSGL~ytHL~~~~~~p~~ 229 (510)
..|.|-||.|||.|.. +|.+.-.+|..-. .+..-|||+++++ +..+.++++..+-..+.+..+ |.
T Consensus 178 ~~pkVSVVIptYN~~~---~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N~--- 250 (657)
T 4fix_A 178 GTANIAVGIPTFNRPA---DCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-NL--- 250 (657)
T ss_dssp SCCCEEEECCBSSCHH---HHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-CC---
T ss_pred CCCeEEEEEEecCCHH---HHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-CC---
Confidence 3578999999999965 3444444443321 1347899999864 345777776544444444322 21
Q ss_pred cCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+. ...||.||++.+.+...-+|.|.|||.....+.+++|
T Consensus 251 ----G~--a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 251 ----GG--SGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp ----HH--HHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHH
T ss_pred ----CH--HHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHH
Confidence 22 2369999999877643458999999999988877664
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=93.20 E-value=0.23 Score=52.14 Aligned_cols=100 Identities=20% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCCcEEEEEcccCCcchhhHHHHhhhhhccCC--CCCeEEEEEeCCCCCHHHHHHHhhc----CCceeeeecCCCCCCCc
Q 010452 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGVTNETASLIAKS----KLRTIHVGVDQKMPASW 230 (510)
Q Consensus 157 ~~~~~IivVTPTY~R~~Q~a~LTRLahTL~lV--p~~LhWIVVEd~~~T~~va~lL~rS----GL~ytHL~~~~~~p~~~ 230 (510)
...|.|-||.|||.+. ..|.+.-.+|..- +.++.-|||+|++. +.+.+++++. ++.+.+. +.
T Consensus 90 ~~~p~vsviIp~~n~~---~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~--~~------ 157 (625)
T 2z86_A 90 LIIDGLSIVIPTYNRA---KILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQ--KD------ 157 (625)
T ss_dssp CCCCCEEEEEEESSCH---HHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEE--CC------
T ss_pred ccCCcEEEEEecCCcH---HHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEe--CC------
Confidence 3568899999999995 3455555555433 23688899998863 2345555553 4444332 11
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
...+. ...||.|++.. ..-+|.|.|+|..++.+.+++|
T Consensus 158 -~~~g~-~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~ 195 (625)
T 2z86_A 158 -YGYQL-CAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSY 195 (625)
T ss_dssp -CSCCH-HHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHH
T ss_pred -CCcch-hHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHH
Confidence 01111 24699999764 2348999999999988877664
No 9
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.00 E-value=0.081 Score=53.64 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCCcEEEEEcccCCcchhhHHHHhhhhhccC-CCCC--eEEEEEeCCCCCHH----HHHHHhhcCCceeeeecCCCCCCC
Q 010452 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYD--LVWIVVEAGGVTNE----TASLIAKSKLRTIHVGVDQKMPAS 229 (510)
Q Consensus 157 ~~~~~IivVTPTY~R~~Q~a~LTRLahTL~l-Vp~~--LhWIVVEd~~~T~~----va~lL~rSGL~ytHL~~~~~~p~~ 229 (510)
.+.|.|-||.|||.+.. ..|.+.-++|.. .+++ +--|||+|++..+. +.++.++.+...+.+..+.+.
T Consensus 26 ~~~p~vSVIIp~yN~~~--~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~--- 100 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAW--STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS--- 100 (472)
T ss_dssp SCCCCEEEEEEESSCCH--HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC---
T ss_pred cCCCCeEEEEEeCCCCH--HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC---
Confidence 35688999999999872 233344443332 2324 47899999865433 334444443233344333221
Q ss_pred cCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh----hhceeeEeEEE
Q 010452 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE----IQNVKWFGAVS 284 (510)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE----mR~tr~vgvWP 284 (510)
+. ...||.|++.. ..-+|.|.|+|..++.+.+++ +.+-..+++-|
T Consensus 101 ----G~--~~a~N~g~~~A----~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~ 149 (472)
T 1xhb_A 101 ----GL--IRARLKGAAVS----RGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149 (472)
T ss_dssp ----CH--HHHHHHHHHHC----CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEE
T ss_pred ----Ch--HHHHHHHHHhc----cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEe
Confidence 12 23699999764 245999999999888776655 33334445444
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=92.58 E-value=0.31 Score=50.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCcEEEEEcccCCcchhhHHHHhhhhhc-cCCCCC--eEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCc
Q 010452 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSL-MLVPYD--LVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGR 233 (510)
Q Consensus 157 ~~~~~IivVTPTY~R~~Q~a~LTRLahTL-~lVp~~--LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r 233 (510)
...|.|-||.|||.+... .|.+.-++| .+.+++ +--|||+|++..+....++++.. ..+.+..+.+ .
T Consensus 63 ~~~p~vSVIIp~yN~~~~--~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n-------~ 132 (501)
T 2ffu_A 63 VDLPATSVVITFHNEARS--ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRR-------E 132 (501)
T ss_dssp SSCCCEEEEEEESSCCHH--HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSC-------C
T ss_pred cCCCCEEEEEEeCcCcHH--HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCC-------c
Confidence 356889999999998753 333333332 223334 37899999976555555555422 2222322221 1
Q ss_pred chhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 234 HQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 234 ~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
+. ...||.|++.. ..-+|.|.|+|..+..+.+++|
T Consensus 133 -G~-~~A~N~G~~~A----~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 133 -GL-MRSRVRGADAA----QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp -HH-HHHHHHHHHHC----CSSEEEECCSSEEECTTCHHHH
T ss_pred -CH-HHHHHHHHHhc----CCCEEEEECCCcccCccHHHHH
Confidence 22 24699999764 2349999999999888777664
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=92.39 E-value=0.38 Score=46.85 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=63.9
Q ss_pred CCcEEEEEcccCCcchhhH-HHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeee-ecCCCCCCCcCCcch
Q 010452 158 NPRTLIVVTPTYVRTFQTL-HLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHV-GVDQKMPASWGGRHQ 235 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a-~LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL-~~~~~~p~~~~~r~~ 235 (510)
..|.|-||.|||.+..... -|..|.+-. .+.++-.|||+|++. +.+.+++++.+..+.+. .+-...+ .+.+.
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~--~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~---~n~G~ 119 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLV--DGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVP---IRPGK 119 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGB--TTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSC---CCCSH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhh--CCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCC---CCCCH
Confidence 5688999999999764332 233332211 132477899998864 45677788777654321 1100011 12222
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 010452 236 LEAKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (510)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVYFADDDNt-Ydl~LFdEm 274 (510)
. ..+|.|++.. ..-+|.|.|+|.. ++.+.+++|
T Consensus 120 ~--~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 120 G--EALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp H--HHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHH
T ss_pred H--HHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHH
Confidence 2 4689999764 2349999999999 888877664
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=90.40 E-value=0.051 Score=58.86 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=0.0
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCCCHHHHHHHhhc------CCceeeeecCCCCCCCcCC
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGVTNETASLIAKS------KLRTIHVGVDQKMPASWGG 232 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~-lVp~~LhWIVVEd~~~T~~va~lL~rS------GL~ytHL~~~~~~p~~~~~ 232 (510)
|.|=||.|||.+.. .|.+.-.+|. +--+++-.|||+|++ ++.+.++|++. ++.+.+.. .+.
T Consensus 2 p~vSVIIp~yN~~~---~L~~~L~Sll~Qt~~~~EIIVVDDgS-tD~t~~il~~~~~~~~~~i~~i~~~--~n~------ 69 (729)
T 3l7i_A 2 NKLTIIVTYYNAEE---YITGCLESIKQQRTQDFNLIIVNDGS-TDQSKKLMDEAIKDYDKNIRFIDLD--ENS------ 69 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHH---HHHHHHHHHHhCCCCCeEEEEEECCC-CCcHHHHHHHHHHhCCCCEEEEECC--CCC------
Confidence 67889999999862 3333222221 111267789999987 33444444432 34444332 111
Q ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
+. ...||.|++..+ .-+|.|.|+|..++...+++|-
T Consensus 70 --G~-~~arN~gi~~A~----gdyI~flD~Dd~~~p~~l~~l~ 105 (729)
T 3l7i_A 70 --GH-AHARNIALEEVE----TPYFMFLDADDELASYAITFYL 105 (729)
T ss_dssp -------------------------------------------
T ss_pred --CH-HHHHHHHHHhcc----CCEEEEECCCCCCChhHHHHHH
Confidence 11 135999997753 2389999999999988887743
No 13
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=90.31 E-value=1.3 Score=46.46 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhc-cCCCCCeEEEEEeCCCCCHHHHHHHhh-----cCCceeeeecCCCCCCCcC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL-MLVPYDLVWIVVEAGGVTNETASLIAK-----SKLRTIHVGVDQKMPASWG 231 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL-~lVp~~LhWIVVEd~~~T~~va~lL~r-----SGL~ytHL~~~~~~p~~~~ 231 (510)
..|.|-||+|||.+..- |.+.-.+| .+.-+++-.|||+|++.. .+.+++++ .++.+.+ ..+
T Consensus 373 ~~~~vsiii~~yn~~~~---l~~~l~s~~~q~~~~~eiivvdd~S~d-~t~~~~~~~~~~~~~i~~~~---~~n------ 439 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKY---IVRCVESALNQTITDLEVCICDDGSTD-DTLRILQEHYANHPRVRFIS---QKN------ 439 (625)
T ss_dssp SSCSEEEEEEESSCTTT---HHHHHHHHHSSSCCSEEEEEEEESCSS-SHHHHHHHHHTTCTTEEEEE---ECC------
T ss_pred cCCeEEEEEeCCCCHHH---HHHHHHHHHhCcCCCeEEEEEECcCCh-hHHHHHHHHHhhCCcEEEEe---CCC------
Confidence 35789999999998532 33322222 222237899999998642 23333333 2333332 222
Q ss_pred CcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
.+.. ..||.||+.. ..-+|.|.|+|..++.+.+++|
T Consensus 440 -~G~~--~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 440 -KGIG--SASNTAVRLC----RGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp -CCHH--HHHHHHHHHC----CSSEEEECCTTCEECTTHHHHH
T ss_pred -CCHH--HHHHHHHHhc----CCCEEEEECCCcccChhHHHHH
Confidence 2222 3699999764 2348999999999998888774
No 14
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=89.13 E-value=0.37 Score=50.97 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhcc-CCCCCe--EEEEEeCCCCCHH----HHHHHhhc-CCceeeeecCCCCCCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDL--VWIVVEAGGVTNE----TASLIAKS-KLRTIHVGVDQKMPAS 229 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~-lVp~~L--hWIVVEd~~~T~~----va~lL~rS-GL~ytHL~~~~~~p~~ 229 (510)
..|.|-||.|||.+. ...|.+.-++|. +.++++ --|||+|++..+. +.++.++. +|.+.+. +.+
T Consensus 110 ~~P~vSVIIp~yNe~--~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~--~~n---- 181 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEG--WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRT--KKR---- 181 (570)
T ss_dssp SCCCEEEEEEESSCC--HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEEC--SSC----
T ss_pred CCCCeEEEEEECCCC--HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEEC--CCC----
Confidence 468899999999986 223334333332 223344 7899999865333 33333332 2333322 221
Q ss_pred cCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
. +. ...||.|++.. ..-+|.|.|+|..++...+++
T Consensus 182 ---~-G~-~~A~N~G~~~A----~gd~i~fLD~D~~~~p~~L~~ 216 (570)
T 2d7i_A 182 ---E-GL-IRTRMLGASVA----TGDVITFLDSHCEANVNWLPP 216 (570)
T ss_dssp ---C-CH-HHHHHHHHHHC----CSSEEEECCSSEEECTTCSHH
T ss_pred ---C-CH-HHHHHHHHHhc----CCCEEEEEcCCccccccHHHH
Confidence 1 22 23699999864 235999999999887765554
No 15
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=88.35 E-value=0.99 Score=49.99 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhccCC--CC-CeEEEEEeCCCCCH------------------HHHHHHhhcCCc
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PY-DLVWIVVEAGGVTN------------------ETASLIAKSKLR 216 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL~lV--p~-~LhWIVVEd~~~T~------------------~va~lL~rSGL~ 216 (510)
..|.|-||.|||...... |.+.-.++... |. .+.-|||+|++..+ .+.++.++.++.
T Consensus 138 ~~P~VSViIPtyNe~~~l--L~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~ 215 (802)
T 4hg6_A 138 ELPTVDILVPSYNEPADM--LSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV 215 (802)
T ss_dssp TCCCEEEEEECTTCCHHH--HHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCcEEEEEEECCCCHHH--HHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE
Confidence 458899999999976432 12222333222 31 28899999986321 234455666777
Q ss_pred eeeeecCCCCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 010452 217 TIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (510)
Q Consensus 217 ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEm 274 (510)
|.+.. ++ ..++. ..+|.|++.. ..-+|.|.|+|...+.+.+++|
T Consensus 216 ~i~~~--~~------~~GKa--~alN~gl~~a----~gd~Il~lDaD~~~~pd~L~~l 259 (802)
T 4hg6_A 216 YSTRE--RN------EHAKA--GNMSAALERL----KGELVVVFDADHVPSRDFLART 259 (802)
T ss_dssp EEECS--SC------CSHHH--HHHHHHHHHC----CCSEEEECCTTEEECTTHHHHH
T ss_pred EEEec--CC------CCcch--HHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 66543 11 11222 3689999764 3358999999999988877663
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=78.61 E-value=7.6 Score=40.00 Aligned_cols=102 Identities=14% Similarity=-0.020 Sum_probs=55.8
Q ss_pred EEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHH----h-hcCCceeeeecCCCCCCCcCCcc
Q 010452 163 IVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGV--TNETASLI----A-KSKLRTIHVGVDQKMPASWGGRH 234 (510)
Q Consensus 163 ivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~--T~~va~lL----~-rSGL~ytHL~~~~~~p~~~~~r~ 234 (510)
+||-|+|... ... +.++...+. .+ +.--|||+||++ |.++++-| . ..|+....+.....-+ .+.
T Consensus 3 lVIiP~~eE~--I~~vl~~l~~~~~-~~-~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~---~n~- 74 (397)
T 2bo4_A 3 LVVFPFKHEH--PEVLLHNVRVAAA-HP-RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGT---LRP- 74 (397)
T ss_dssp EEEEECCSSC--HHHHHHHHHHHHH-ST-TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSS---SSS-
T ss_pred EEEEeCCccC--HHHHHHHHHHhcc-CC-CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCC---CCC-
Confidence 5666788642 222 222321111 23 466799999864 44444422 1 4577665543221000 012
Q ss_pred hhhHHHHHHHHHHHH-hccCCeEEEEecCCCc-cchhhhhhh
Q 010452 235 QLEAKMRLRALRIVR-EEKLDGIVMFADDSNM-HSMELFDEI 274 (510)
Q Consensus 235 ~~~~~qRN~AL~~IR-~~~~~GVVYFADDDNt-Ydl~LFdEm 274 (510)
+.+ ..-+.+++|.. .... -+|.|.|-|.. |+.+...+|
T Consensus 75 GkG-~Al~~G~~~Al~~a~g-d~vv~mDADlq~~~P~~i~~L 114 (397)
T 2bo4_A 75 GKG-DGMNTALRYFLEETQW-ERIHFYDADITSFGPDWITKA 114 (397)
T ss_dssp SHH-HHHHHHHHHHHHHCCC-SEEEECCTTCSSCCHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCHHHHHHH
Confidence 222 35778888875 4333 38899999995 899877765
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=76.90 E-value=19 Score=36.48 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=64.7
Q ss_pred EEcccCCcchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCC--CCCcCCcchh--
Q 010452 164 VVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKM--PASWGGRHQL-- 236 (510)
Q Consensus 164 vVTPTY~R~~Q~a~LTRLahTL~lVp~---~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~--p~~~~~r~~~-- 236 (510)
||-+||.|+. |.|+-..|....+ +..-||..|+. ..+|.++++.-+.+.+|+-.+..- ...-++.+..
T Consensus 6 ViI~~yNRp~----l~~~L~sL~~~~p~~~~~~iivsdDgs-~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 6 ILVIACDRST----VRRCLDKLLHYRPSAELFPIIVSQDCG-HEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGY 80 (343)
T ss_dssp EEEEESSCTT----HHHHHHHHHHHCSCTTTSCEEEEECTT-CHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHH
T ss_pred EEEEECCcHH----HHHHHHHHHhcCCCcCCcEEEEEECCC-CHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccc
Confidence 5667899983 4444444444421 34567777775 678999999887777776332110 1001111100
Q ss_pred --hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhhc
Q 010452 237 --EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (510)
Q Consensus 237 --~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR~ 276 (510)
.......||.++=+....+-|.|-|||..-+..+|+-|.+
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 1123456777765544578899999999999888866544
No 18
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=59.30 E-value=19 Score=35.08 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCcEEEEEcccCCcchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchh
Q 010452 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~-LTRLahTL~lVp~~LhWIVVEd~~~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~ 236 (510)
+.+.|-||.|||.|...... |..|...|..-..++--|||+|++.. . + .+
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~---------------------~----f-~~--- 113 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT---------------------I----F-NR--- 113 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS---------------------C----C-CH---
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC---------------------c----c-ch---
Confidence 35789999999999765543 33333222222236777999984320 0 1 01
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchh
Q 010452 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSME 269 (510)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~ 269 (510)
...||.|+..--+....-+|.|.|+|-...-+
T Consensus 114 -a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 114 -AKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp -HHHHHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred -hhhhhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 13589988433233334589999999887665
No 19
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=55.83 E-value=7.7 Score=40.59 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.1
Q ss_pred cEEEEEcccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCCC
Q 010452 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGV 202 (510)
Q Consensus 160 ~~IivVTPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~~ 202 (510)
..+-+|.|.|.=-.+ | |-..|...|.+.-+|||.||+.
T Consensus 53 ~klSIVVPvYNEe~~---l--LesVl~qi~~d~eIIlVdDGS~ 90 (391)
T 2wvl_A 53 EQTAIVVPTRNERLK---L--LEGVLSGIPHEALILVASNSSP 90 (391)
T ss_dssp TTEEEEEEESSCCHH---H--HHHHHHTSCTTSEEEEEECCCH
T ss_pred hceEEEEeccCcHHH---H--HHHHHhcCCCCceEEEEECCCC
Confidence 346678899985432 2 5566777777999999999973
No 20
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=32.29 E-value=89 Score=27.96 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=42.6
Q ss_pred CCcEEEEEcccCCcchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhcCCceeeeecCCCCCC
Q 010452 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGVDQKMPA 228 (510)
Q Consensus 158 ~~~~IivVTPTY~R~~Q~a~LTRLahTL--~lVp~~LhWIVVEd~~----~T~~va~lL~rSGL~ytHL~~~~~~p~ 228 (510)
.+..+++|||.- ..+|.|+|+-| +|+| +-||++. ....+.++|++.|+.++....+ ||.
T Consensus 74 ~~e~vl~i~~~d-----~~~l~r~ayhlGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lg~~v~~~~~~--fpe 138 (147)
T 1ear_A 74 KLEKVYVIKPQT-----MQEMGKMAFEIGNRHTM-----CIIEDDEILVRYDKTLEKLIDEVGVSYEQSERR--FKE 138 (147)
T ss_dssp CCEEEEEEECSS-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHHHTCEEEEEEEC--CCS
T ss_pred CCCcEEEEECCC-----HHHHHHHHHHHhCCCce-----eEEeCCEEEEcCcHHHHHHHHHCCCeeEEEEec--CCC
Confidence 345677787753 24688999888 7887 4556552 3467999999999999998754 554
No 21
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=30.30 E-value=16 Score=32.01 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.0
Q ss_pred CCeEEEEe-cCCCccchhh
Q 010452 253 LDGIVMFA-DDSNMHSMEL 270 (510)
Q Consensus 253 ~~GVVYFA-DDDNtYdl~L 270 (510)
..|+++|| |||++|+..|
T Consensus 80 vkG~avFaS~d~sVy~a~l 98 (106)
T 3nrf_A 80 VEGDAIFASEDDAVYGASL 98 (106)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeeEEEEeeCChhheeeeE
Confidence 37888887 6799998765
No 22
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=27.00 E-value=1.1e+02 Score=28.34 Aligned_cols=55 Identities=7% Similarity=0.086 Sum_probs=40.7
Q ss_pred CcEEEEEcccCCcchhhHHHHhhhhhc--cCCCCCeEEEEEeCC------CCCHHHHHHHhhcCCceeeeecC
Q 010452 159 PRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAG------GVTNETASLIAKSKLRTIHVGVD 223 (510)
Q Consensus 159 ~~~IivVTPTY~R~~Q~a~LTRLahTL--~lVp~~LhWIVVEd~------~~T~~va~lL~rSGL~ytHL~~~ 223 (510)
+..+++|+|.- ..+|.|+|+-| +|+| +.||++ .....+.++|++-|+.+++...+
T Consensus 77 ~e~vl~i~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~~~l~i~~D~vl~~mL~~lG~~v~~~~~p 139 (170)
T 3tj8_A 77 DSEVIHIQAKS-----VAEVAKICYEIGNRHAA-----LYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSK 139 (170)
T ss_dssp CEEEEEEECSS-----HHHHHHHHHHHHHHTCC-----EEECSSTTEEEEECCHHHHHHHHHHTCEEEEEEEC
T ss_pred CCcEEEEeCCC-----HHHHHHHHHHHcCCcce-----EEECCCceEEEEcCcHHHHHHHHHCCCeeEEEEec
Confidence 45566777643 45789999888 6776 456655 23567999999999999999764
No 23
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.00 E-value=1.2e+02 Score=22.65 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=46.1
Q ss_pred EEEeCCC-CCHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 195 IVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 195 IVVEd~~-~T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
+|||+.. ......++|++.|...... .. -..|+..++++..+-||.=.+..+.-.+++.+.
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~~--~~----------------~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~ 66 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIWL--VD----------------GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQH 66 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEE--SC----------------HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEEe--cC----------------HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 4677664 3567888999888654322 10 235888888887776665544444445677777
Q ss_pred hhceeeEeEEEeeEE
Q 010452 274 IQNVKWFGAVSVGIL 288 (510)
Q Consensus 274 mR~tr~vgvWPVGlv 288 (510)
+|+.....--||=++
T Consensus 67 l~~~~~~~~~~ii~~ 81 (119)
T 2j48_A 67 LREHQADPHPPLVLF 81 (119)
T ss_dssp HHHTCCCSSCCCEEE
T ss_pred HHhccccCCCCEEEE
Confidence 776532223455444
No 24
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=22.91 E-value=2.2e+02 Score=26.11 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhh
Q 010452 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (510)
Q Consensus 240 qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdEmR 275 (510)
.||.|++.- ..-+|.|.|+|-.++-..+++|.
T Consensus 65 a~N~Gi~~A----~g~yl~fln~D~~~~~~~l~~l~ 96 (249)
T 2nxv_A 65 WHKQMLPRC----KGRYVIFCHEDVELVDRGYDDLV 96 (249)
T ss_dssp HHHHHGGGC----CSSEEEEEETTEECSSCCHHHHH
T ss_pred HHHHHHHhc----CCCEEEEECCCcccCccHHHHHH
Confidence 689998542 33489999999888877666643
No 25
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.85 E-value=1.9e+02 Score=22.85 Aligned_cols=79 Identities=8% Similarity=0.125 Sum_probs=47.0
Q ss_pred EEEEEeCCCC-CHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhh
Q 010452 193 VWIVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELF 271 (510)
Q Consensus 193 hWIVVEd~~~-T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LF 271 (510)
.=+||||... .....++|++.|..... +. .-..|++.++++.-+-||.=.+-.+.-.+++.
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v~~--~~----------------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~ 70 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDAGFHIIS--AD----------------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTI 70 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE--ES----------------SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCeEEEE--eC----------------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 3357777753 56788999998864322 21 02358888888776555543333444456777
Q ss_pred hhhhceeeEeEEEeeEEe
Q 010452 272 DEIQNVKWFGAVSVGILA 289 (510)
Q Consensus 272 dEmR~tr~vgvWPVGlv~ 289 (510)
++||+.....-.||=+++
T Consensus 71 ~~l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 71 RAILDNSLEQGIAIVMLT 88 (142)
T ss_dssp HHHHHTTCCTTEEEEEEE
T ss_pred HHHHhhcccCCCCEEEEE
Confidence 888763223345665553
No 26
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=20.58 E-value=2.6e+02 Score=28.54 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=56.3
Q ss_pred CcEEEEE--cccCCcchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhcCCceeeeecCCCCCCC--cCC
Q 010452 159 PRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPAS--WGG 232 (510)
Q Consensus 159 ~~~IivV--TPTY~R~~Q~a~LTRLahTL~lVp~~LhWIVVEd~~--~T~~va~lL~rSGL~ytHL~~~~~~p~~--~~~ 232 (510)
...|++- |||+-...+..+|.+.......++ ....|-||... .+.+..+.|++.|+...++++..--+.. ...
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~ 183 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN 183 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC
Confidence 3556654 899865555444444433321233 35678889543 4789999999999999999886321110 011
Q ss_pred cchhhHHHHHHHHHHHHhccCC
Q 010452 233 RHQLEAKMRLRALRIVREEKLD 254 (510)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~ 254 (510)
|.+ ...+-..|++.+++....
T Consensus 184 R~~-~~~~~~~ai~~~r~~G~~ 204 (457)
T 1olt_A 184 REQ-DEEFIFALLNHAREIGFT 204 (457)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCC
T ss_pred CCC-CHHHHHHHHHHHHHcCCC
Confidence 111 123566788899887543
No 27
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=20.46 E-value=1e+02 Score=24.44 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=39.7
Q ss_pred EEEeCCCC-CHHHHHHHhhcCCceeeeecCCCCCCCcCCcchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 010452 195 IVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (510)
Q Consensus 195 IVVEd~~~-T~~va~lL~rSGL~ytHL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVYFADDDNtYdl~LFdE 273 (510)
+||||... ...+.++|++.|..... +.. -..|+..++++.-+-|| ..|.|+ +++.++
T Consensus 22 livdd~~~~~~~l~~~L~~~g~~v~~--~~~----------------~~~al~~l~~~~~dlvi-~~~~~g---~~~~~~ 79 (137)
T 2pln_A 22 LLIEKNSVLGGEIEKGLNVKGFMADV--TES----------------LEDGEYLMDIRNYDLVM-VSDKNA---LSFVSR 79 (137)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEE--ESC----------------HHHHHHHHHHSCCSEEE-ECSTTH---HHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHcCcEEEE--eCC----------------HHHHHHHHHcCCCCEEE-EcCccH---HHHHHH
Confidence 57787754 56788999998864432 210 23588888888777777 433332 577788
Q ss_pred hhce
Q 010452 274 IQNV 277 (510)
Q Consensus 274 mR~t 277 (510)
||+.
T Consensus 80 l~~~ 83 (137)
T 2pln_A 80 IKEK 83 (137)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
Done!