Query 010453
Match_columns 510
No_of_seqs 154 out of 208
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 00:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05817 Ribophorin_II: Oligos 100.0 3E-118 7E-123 981.2 46.3 468 4-504 166-636 (636)
2 KOG2447 Oligosaccharyltransfer 100.0 1.2E-68 2.7E-73 526.0 16.4 270 222-501 13-284 (287)
3 PF11797 DUF3324: Protein of u 72.2 20 0.00044 33.0 8.1 72 144-217 42-116 (140)
4 PF01544 CorA: CorA-like Mg2+ 64.7 7.3 0.00016 38.7 3.8 38 434-471 253-290 (292)
5 PRK09546 zntB zinc transporter 61.4 24 0.00053 36.6 7.1 13 435-447 284-296 (324)
6 TIGR02962 hdxy_isourate hydrox 60.4 39 0.00085 30.4 7.2 64 147-215 2-66 (112)
7 TIGR00383 corA magnesium Mg(2+ 57.3 32 0.00069 35.3 7.0 23 421-446 267-289 (318)
8 cd05822 TLP_HIUase HIUase (5-h 56.9 45 0.00097 30.0 7.0 64 147-215 2-66 (112)
9 PRK15036 hydroxyisourate hydro 56.1 54 0.0012 30.5 7.6 65 145-215 26-91 (137)
10 KOG2447 Oligosaccharyltransfer 48.9 3.4E+02 0.0073 28.4 13.0 108 388-503 163-283 (287)
11 COG2966 Uncharacterized conser 45.1 87 0.0019 32.0 7.8 25 395-419 110-134 (250)
12 PRK11085 magnesium/nickel/coba 43.6 68 0.0015 33.8 6.9 12 435-446 276-287 (316)
13 COG0598 CorA Mg2+ and Co2+ tra 39.4 51 0.0011 34.3 5.3 24 422-448 272-295 (322)
14 PF07608 DUF1571: Protein of u 36.6 97 0.0021 31.1 6.4 42 279-320 13-57 (213)
15 PRK10669 putative cation:proto 35.3 79 0.0017 35.4 6.3 91 409-501 30-140 (558)
16 PF08400 phage_tail_N: Prophag 34.7 3.1E+02 0.0067 25.6 8.9 54 154-215 11-64 (134)
17 PF13620 CarboxypepD_reg: Carb 33.6 90 0.0019 24.9 4.8 55 147-214 1-55 (82)
18 COG4420 Predicted membrane pro 30.2 1.2E+02 0.0025 30.0 5.6 46 418-463 57-103 (191)
19 TIGR00932 2a37 transporter, mo 29.6 1.4E+02 0.003 29.9 6.4 37 465-501 91-127 (273)
20 PF05751 FixH: FixH; InterPro 29.2 2.8E+02 0.0061 24.9 7.8 60 281-350 69-131 (146)
21 PF03699 UPF0182: Uncharacteri 29.0 3.3E+02 0.007 32.5 10.0 104 400-506 151-272 (774)
22 PF11837 DUF3357: Domain of un 28.3 19 0.00042 31.9 0.0 40 391-430 6-48 (106)
23 PF05915 DUF872: Eukaryotic pr 26.4 1.7E+02 0.0037 26.5 5.7 31 406-436 37-67 (115)
24 PF06570 DUF1129: Protein of u 25.7 1.8E+02 0.0039 28.4 6.2 61 403-472 138-198 (206)
25 PF13828 DUF4190: Domain of un 25.7 1.3E+02 0.0029 24.2 4.4 22 483-504 17-38 (62)
26 PF13571 DUF4133: Domain of un 25.4 1.4E+02 0.003 26.4 4.8 42 451-492 18-60 (96)
27 PF05751 FixH: FixH; InterPro 25.0 3.1E+02 0.0068 24.6 7.3 65 146-218 69-135 (146)
28 TIGR03061 pip_yhgE_Nterm YhgE/ 24.7 82 0.0018 29.3 3.5 43 397-445 2-47 (164)
29 PF00576 Transthyretin: HIUase 24.4 1.2E+02 0.0025 27.4 4.2 65 148-216 3-68 (112)
30 PRK00068 hypothetical protein; 24.4 6.4E+02 0.014 30.9 11.4 100 399-502 158-280 (970)
31 smart00095 TR_THY Transthyreti 24.3 3.6E+02 0.0077 24.8 7.4 65 145-215 3-69 (121)
32 COG1086 Predicted nucleoside-d 24.0 3.6E+02 0.0079 31.0 8.8 54 452-505 58-111 (588)
33 PF14782 BBS2_C: Ciliary BBSom 23.2 5.8E+02 0.013 28.2 10.1 86 274-373 106-194 (431)
34 PF05568 ASFV_J13L: African sw 23.1 1E+02 0.0023 29.3 3.8 35 474-508 25-59 (189)
35 PF02369 Big_1: Bacterial Ig-l 22.5 2.5E+02 0.0053 24.2 5.8 64 144-215 23-88 (100)
36 cd02437 CCC1_like_1 CCC1-relat 22.0 3.4E+02 0.0074 25.8 7.2 33 462-494 137-173 (175)
37 TIGR03769 P_ac_wall_RPT actino 21.9 1.9E+02 0.004 21.5 4.2 18 205-222 11-28 (41)
38 PF05232 BTP: Bacterial Transm 21.8 3E+02 0.0065 22.4 5.8 41 451-491 9-49 (67)
39 COG4125 Predicted membrane pro 21.8 2.5E+02 0.0055 26.5 5.9 52 451-504 83-134 (149)
40 COG2351 Transthyretin-like pro 21.7 2.9E+02 0.0064 25.5 6.2 65 146-215 9-74 (124)
41 PRK03659 glutathione-regulated 21.3 2.4E+02 0.0053 32.1 7.0 88 409-501 29-139 (601)
42 PRK10263 DNA translocase FtsK; 21.1 2.3E+02 0.0051 35.6 7.1 25 452-476 74-98 (1355)
43 TIGR00917 2A060601 Niemann-Pic 21.0 4.5E+02 0.0097 32.9 9.6 81 412-501 1046-1128(1204)
44 cd05821 TLP_Transthyretin Tran 20.8 4.4E+02 0.0095 24.2 7.2 67 144-215 5-72 (121)
45 PRK03562 glutathione-regulated 20.3 2.9E+02 0.0062 31.7 7.3 89 408-501 28-139 (621)
No 1
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=100.00 E-value=3.2e-118 Score=981.16 Aligned_cols=468 Identities=37% Similarity=0.604 Sum_probs=440.0
Q ss_pred hhhhHHHhccceecccccchHHHHHHhhcchhhhhhccccccccccccccceeecccccCCcchhhhhhhhhhhcccccc
Q 010453 4 SGIALEALSGVVSLASSEIDQFMIGAVKNDIVKLFDSVEKYDDGTFYFDEKLVNMREQQGPLATTSSVVRGLTAFSSVIT 83 (510)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~~~v~~~~~eggLs~Ta~~v~g~~~la~~~~ 83 (510)
+|.|+++++.+...+ |+.+++|+|||.+.+++|+|++|+| |||||++||++|+|+|+|++++|
T Consensus 166 ~g~al~~aa~L~~~a--------------~l~~~~~~ieD~v~qaDEv~~~~Lq---FeggLs~TA~vv~g~~~la~~~~ 228 (636)
T PF05817_consen 166 LGYALHAAAQLSKQA--------------DLADIVERIEDAVAQADEVDGKYLQ---FEGGLSTTALVVRGIYKLADAVG 228 (636)
T ss_pred HHHHHHHHHhhccch--------------hhhHHHHHHHHHHHhhhhhccccee---ecCCchhhHHHHHHHHHHHHhhC
Confidence 588888888776533 4888899999999999999999999 89999999999999999999999
Q ss_pred CCCCCChhHHHHHhhhhhccCCCCChhhHHHHHHHHHhhhcCCeeeceEEEccCceeccccCCceEEEEEeccCCCCCCc
Q 010453 84 ESLNLTGDKILGIAKFFLGIGIPGDTKNFFDQVDSLACLENNRVSIPLILSLPSTVISLTKKDSLKVKVNTVLGSHAPPL 163 (510)
Q Consensus 84 ~~p~i~~dQi~~~anyllsr~~v~s~k~a~~l~~al~~l~~N~~~~P~~~~l~~~~~~~~~~~~l~v~Vtdvlg~~l~~~ 163 (510)
|+|+|++||++||||||||||++|++||||++++||++|++|++++|+|++++++.++.+++|.|+|+|+|+||+|++++
T Consensus 229 k~~~i~~dQivklanylLsrr~v~s~k~a~~l~~al~~L~~N~~~~Pv~i~l~~~~~~~~~~~~l~v~Vt~vlG~~~~~~ 308 (636)
T PF05817_consen 229 KKPPIKEDQIVKLANYLLSRRSVQSPKDAFNLLEALKSLSSNKFHVPVVISLESSASLSSSKPSLKVRVTNVLGQPLPPL 308 (636)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhCCccccEEEEeCCCcccccCCCcEEEEEEeccCCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred eEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEeecccccceeeeecceeEEEEEEEEEEE
Q 010453 164 TVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQDSEQQTVYATGTLTQVPIYVTGLIK 243 (510)
Q Consensus 164 ~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~~d~~~~~~~~~~~~~~~~v~V~~~v~ 243 (510)
+|++++++++.+++++++++++|+++++++.|++|+++.|+++|+|++++++ . ++.++++ .+.+++|+|+++|+
T Consensus 309 ~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k~~~G~Y~~~~~~-~----~~~~~~~-~~~~~~vkV~~~v~ 382 (636)
T PF05817_consen 309 SVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLKPARGYYKFSFSV-S----GDKRLIG-NTAQLQVKVLGEVS 382 (636)
T ss_pred hhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCCCCCceEEEEEEe-c----Cccceee-eEEEEEEEEEEEEE
Confidence 9999999888888889999999998888899999999999999999999988 2 2235554 34899999999999
Q ss_pred EEeeEEEEeeCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEc-CCCCCCCceeEEEEEEe-CCceEEEEEec-c
Q 010453 244 IENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMST-PLGNAFKPHQAFLRLRH-ETKVEHTFVVG-S 320 (510)
Q Consensus 244 v~~~~v~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~L~l~F~l~~-~~g~~~~PhQafL~L~~-~tg~e~~fv~k-~ 320 (510)
|++++++|.|+|+++.++++++++++++..+|++|++|+++++|+|++ ++|++++||||||||+| ++|+|++|+++ +
T Consensus 383 v~~~~v~v~d~d~~~~~~~~~v~~~~k~~~~l~ad~~~~l~l~f~l~~~~~g~~~~phQafl~l~~~~t~~e~~f~~~~~ 462 (636)
T PF05817_consen 383 VENAEVSVADSDQSSAPKKTSVDYPSKLSSSLSADSHQKLKLKFSLTDKSDGKPKRPHQAFLRLTHQETGLEIIFPAEVD 462 (636)
T ss_pred EeEEEEEeecCCCCcCcceeeecccccccCCccCCCCceEEEEEEEEEcCCCCccceeEEEEEEEeCCCCceEEEeeecC
Confidence 999999999999999999999999999999999999999999999965 78899999999999999 99999999985 5
Q ss_pred CCceEEEEeccccchhhhhccCccEEEEEEEecccccCCccccceeEEEeCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 010453 321 SGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEPPENASRPPPQPVDPYTRYGPKAEITH 400 (510)
Q Consensus 321 s~k~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~p~~~~l~~v~L~f~~~~~~~~~~p~~~~e~~~ry~pkPEI~H 400 (510)
++++|++++|+++++++|.+.||+|+++|||||+.++||+.|++|+++|++++. +++.+++++.||+|||||||
T Consensus 463 ~~~~~k~~l~~~~~~~~f~~~sg~y~~~LiiGd~~~~~~~~~~l~~i~l~~~~~------~~~~~~~~~~ry~~kpEI~H 536 (636)
T PF05817_consen 463 SSGKYKFELDLKDLPKQFLYLSGPYSLSLIIGDASISNPLNWNLGDISLKFPED------APPPKYEKPVRYGPKPEIHH 536 (636)
T ss_pred CCceEEEEEeccccchhhhhcCCceeEEEEEecCCcCCceeeeeeEEEEecCCc------CCCCCccccccCCCCCceee
Confidence 567899999999999999999999999999999999999999999999999873 12245667799999999999
Q ss_pred ecCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Q 010453 401 IFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWLKLDLFTTLK 480 (510)
Q Consensus 401 iFR~peKrPP~iVS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~Lf~~YWl~lnmFqTL~ 480 (510)
+||+||||||++||++|+++|++||++||++|.++|+|++|+|+++ ++++||+||+|||++|++||++|||||||+
T Consensus 537 ~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl~~l~~~~----~~~~F~~~l~ai~glf~~Yw~~l~lFqTL~ 612 (636)
T PF05817_consen 537 IFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGANLSNLPFSP----SAILFHGGLGAIEGLFFLYWLGLNLFQTLP 612 (636)
T ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCCCc----hHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999998 499999999999999999999999999999
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHh
Q 010453 481 TLCFLGVFLMVVGHRTLSHLASAS 504 (510)
Q Consensus 481 yl~~Lg~~t~l~G~raLr~la~~r 504 (510)
|+++||+|||++|+|+||++++||
T Consensus 613 ~~~~lg~~t~~~G~r~L~~~a~~r 636 (636)
T PF05817_consen 613 YLAVLGAVTFLSGNRALRELAERR 636 (636)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhcC
Confidence 999999999999999999999998
No 2
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-68 Score=526.04 Aligned_cols=270 Identities=41% Similarity=0.696 Sum_probs=253.1
Q ss_pred cceeeeecceeEEEEEEEEEEEEEeeEEEEeeCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEcCCCCCCCcee
Q 010453 222 QQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMSTPLGNAFKPHQ 301 (510)
Q Consensus 222 ~~~~~~~~~~~~~~v~V~~~v~v~~~~v~v~d~d~~~~~~~~~l~~~~kl~~~L~ad~~~~L~l~F~l~~~~g~~~~PhQ 301 (510)
++++|++.+++.+ |+++++|+++|+++++.|+|++.+++.++++++.|+...+++|++|++.++|+++++.|.+.+|||
T Consensus 13 ~~~~~ia~a~~l~-v~a~~~V~v~n~~ig~~d~d~~~a~~~~~vt~~~k~~~vl~ad~~q~l~l~Fql~~~~g~~~kpHQ 91 (287)
T KOG2447|consen 13 CISFYIAYAQALV-VAASGTVGVSNLEIGIVDSDIGIAETVKKVTLPDKLEVVLSADAIQKLNLKFQLTLLTGAPLKPHQ 91 (287)
T ss_pred hhHHHHHHHHHHh-hhhccccccceEEEEeeccccCcccccceeeecCCCceeEeeccchhheeeEEEEecCCCCCccch
Confidence 4567877666665 999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EEEEEEe-CCceEEEEEeccC-CceEEEEeccccchhhhhccCccEEEEEEEecccccCCccccceeEEEeCCCCCCCCC
Q 010453 302 AFLRLRH-ETKVEHTFVVGSS-GKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEPPENAS 379 (510)
Q Consensus 302 afL~L~~-~tg~e~~fv~k~s-~k~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~p~~~~l~~v~L~f~~~~~~~~ 379 (510)
+|+|+.+ ++|.|++|+++.+ |+.|++++|..+.+++|.++||+|++.|+|||++++||+.|++|+++++||++.++++
T Consensus 92 af~rl~~~~~g~e~vfv~~~d~~~v~~~~l~~~~~~~s~~~~sgtyti~L~vgdas~knpl~~~i~~l~l~fp~~~e~~~ 171 (287)
T KOG2447|consen 92 AFFRLENKKTGKEVVFVVEPDQGKVYKLELDTLLQEASFSYLSGTYTIYLLVGDASLKNPLLWNIAQLNLNFPEDHEPKP 171 (287)
T ss_pred heeEeeecCCCeEEEEEEecCCchhHHHHHHHhccccccccCCCcEEEEEEecccccCCcchhhhhheEecCCccccccc
Confidence 9999999 7899999999755 7789999999999999999999999999999999999999999999999999877666
Q ss_pred CCCCCCCCCCCCCCCCCceeeecCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchHHHHHHHHH
Q 010453 380 RPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGI 459 (510)
Q Consensus 380 ~~p~~~~e~~~ry~pkPEI~HiFR~peKrPP~iVS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL 459 (510)
+++ .++|+|||||+|+||+||||||+++|++|+++|+.|+++|+++|.++|+|++|+|.++. |+++||+||
T Consensus 172 ~~~------~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~---s~~~Fh~gi 242 (287)
T KOG2447|consen 172 KVS------QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPT---STLGFHAGI 242 (287)
T ss_pred ccc------hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCc---hhhhhhhHH
Confidence 532 36899999999999999999999999999999999999999999999999999999984 799999999
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 010453 460 AAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 501 (510)
Q Consensus 460 ~gie~Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la 501 (510)
+|+|+||++||+++||||||+|+++||++||++|||+||...
T Consensus 243 ~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra~~ 284 (287)
T KOG2447|consen 243 AGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRAQG 284 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999544
No 3
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=72.24 E-value=20 Score=32.95 Aligned_cols=72 Identities=8% Similarity=0.167 Sum_probs=47.2
Q ss_pred cCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEe--ccccccCCCCc-eEEecCCCCCCCceeEEEEEEEee
Q 010453 144 KKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIE--NQELKFDPQDA-VYFLDDLPASFDVGEYIFVFKMLV 217 (510)
Q Consensus 144 ~~~~l~v~Vtdvlg~~l~~~~V~~~~~~~~~~~~~~v~~--~~~l~~~~~~~-~y~l~~~~~k~~~G~Y~~~~~v~~ 217 (510)
..+.|.+++.|.=..-+..+++... +...+.+.++.+ +..+++.|+.. .|.++.-..+..+|-|++.+.+..
T Consensus 42 ~~~~i~~~l~N~~~~~l~~~~v~a~--V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 42 GRNVIQANLQNPQPAILKKLTVDAK--VTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred CeeEEEEEEECCCchhhcCcEEEEE--EEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEc
Confidence 3578888888888887887777642 222222234443 33466766654 466666567899999999987744
No 4
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=64.73 E-value=7.3 Score=38.67 Aligned_cols=38 Identities=21% Similarity=0.607 Sum_probs=17.5
Q ss_pred HhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhh
Q 010453 434 RLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWL 471 (510)
Q Consensus 434 ~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~Lf~~YWl 471 (510)
..|.|+.++|....+.-|......++..+.++...||+
T Consensus 253 ~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 290 (292)
T PF01544_consen 253 IFGMNFKGMPELDWPYGYFFVIILGLMILVAILLYWWF 290 (292)
T ss_dssp STTS-SS---SSSSSS-SHHH--HHHHHHHHHHHHCCT
T ss_pred HhhCCccCCCccCCccHHHHHHHHHHHHHHHHHHHHhe
Confidence 34889999997764432233322455555555555554
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=61.42 E-value=24 Score=36.55 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=10.8
Q ss_pred hcccCCCCCCCCC
Q 010453 435 LGVNLKNFPTSAV 447 (510)
Q Consensus 435 lG~Nl~n~p~s~~ 447 (510)
.|.|++++|....
T Consensus 284 yGMNf~~mPel~~ 296 (324)
T PRK09546 284 FGVNLGGIPGGGW 296 (324)
T ss_pred hccccCCCCCcCC
Confidence 4889999999763
No 6
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=60.39 E-value=39 Score=30.35 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=38.3
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 147 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 147 ~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+|..+|-| ..|+|+..+.|.+.+. ..++-..+... ..+.|+..=..........+|.|++.|.+
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~---~~~~~~~i~~~--~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~ 66 (112)
T TIGR02962 2 PLSTHVLDTTSGKPAAGVPVTLYRL---DGSGWTPLAEG--VTNADGRCPDLLPEGETLAAGIYKLRFDT 66 (112)
T ss_pred CceEEEEeCCCCccCCCCEEEEEEe---cCCCeEEEEEE--EECCCCCCcCcccCcccCCCeeEEEEEEh
Confidence 47788887 8899999999998653 22211112211 23445542111122345678999999987
No 7
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=57.30 E-value=32 Score=35.26 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCC
Q 010453 421 TILPLFGFIIGLLRLGVNLKNFPTSA 446 (510)
Q Consensus 421 vlapll~Lli~W~~lG~Nl~n~p~s~ 446 (510)
+++|+-++-+.| |.|++++|...
T Consensus 267 IflP~t~IaGiy---GMNf~~mP~l~ 289 (318)
T TIGR00383 267 IFIPLTFIAGIY---GMNFKFMPELN 289 (318)
T ss_pred HHHHHHHHHHHH---hCCcccCcccc
Confidence 455554443333 88999999976
No 8
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=56.91 E-value=45 Score=30.01 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=38.9
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 147 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 147 ~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
.|..+|-| ..|+|...+.|.+.+.. +.+-..+... ..+.|+..=.+........+|.|++.|.+
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~~---~~~~~~i~~~--~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 66 (112)
T cd05822 2 PLSTHVLDTATGKPAAGVAVTLYRLD---GNGWTLLATG--VTNADGRCDDLLPPGAQLAAGTYKLTFDT 66 (112)
T ss_pred CceeEEEeCCCCcccCCCEEEEEEec---CCCeEEEEEE--EECCCCCccCcccccccCCCeeEEEEEEh
Confidence 46778877 78999999999986642 2211112222 23445543222222246789999999987
No 9
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=56.13 E-value=54 Score=30.46 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 145 KDSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 145 ~~~l~v~Vtdv-lg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+..|+.+|-|. -|+|++.+.|.+.+. .++.-..+... ..|.|+. +...+.+....+|.|++.|.+
T Consensus 26 ~~~Is~HVLDt~~G~PA~gV~V~L~~~---~~~~w~~l~~~--~Td~dGR-~~~l~~~~~~~~G~Y~L~F~t 91 (137)
T PRK15036 26 QNILSVHILNQQTGKPAADVTVTLEKK---ADNGWLQLNTA--KTDKDGR-IKALWPEQTATTGDYRVVFKT 91 (137)
T ss_pred CCCeEEEEEeCCCCcCCCCCEEEEEEc---cCCceEEEEEE--EECCCCC-CccccCcccCCCeeEEEEEEc
Confidence 35699999987 899999999998653 11111112111 2344553 222111334678999999987
No 10
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=48.87 E-value=3.4e+02 Score=28.42 Aligned_cols=108 Identities=16% Similarity=-0.012 Sum_probs=72.6
Q ss_pred CCCCCCCCCceeeecCCCCCCCChhhHHHHH----------HH--HHHHHHHHHHHHHHhcccCCCCCCCCCcchHHH-H
Q 010453 388 PYTRYGPKAEITHIFRAPEKRPPQELSLAFL----------VL--TILPLFGFIIGLLRLGVNLKNFPTSAVPATFAV-I 454 (510)
Q Consensus 388 ~~~ry~pkPEI~HiFR~peKrPP~iVS~~Ft----------~l--vlapll~Lli~W~~lG~Nl~n~p~s~~~~~~~i-~ 454 (510)
-|+++.++|+-. .++=.|-+.|+=+|- .. ++.++.-|+++...++---.|+..-+ +.. -
T Consensus 163 fp~~~e~~~~~~----~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~p----ss~~s 234 (287)
T KOG2447|consen 163 FPEDHEPKPKVS----QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFP----SSPTS 234 (287)
T ss_pred CCcccccccccc----hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----CCCch
Confidence 345677777754 444445555666652 22 23444444444434333333666655 455 9
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Q 010453 455 FHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASA 503 (510)
Q Consensus 455 F~~sL~gie~Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la~~ 503 (510)
+++.++|+-+++++|++-|.=+....-+.++...++.++--.=|=++..
T Consensus 235 ~~~Fh~gi~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra~ 283 (287)
T KOG2447|consen 235 TLGFHAGIAGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRAQ 283 (287)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHhh
Confidence 9999999999999999999999999999999999998886655555443
No 11
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=45.14 E-value=87 Score=31.98 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=17.2
Q ss_pred CCceeeecCCCCCCCChhhHHHHHH
Q 010453 395 KAEITHIFRAPEKRPPQELSLAFLV 419 (510)
Q Consensus 395 kPEI~HiFR~peKrPP~iVS~~Ft~ 419 (510)
+.+..|++++|.+.|+..+-+...+
T Consensus 110 ~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 110 HKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHHHHhhhCccccccHHHHHHHHH
Confidence 5567788888988887766544433
No 12
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=43.63 E-value=68 Score=33.78 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.0
Q ss_pred hcccCCCCCCCC
Q 010453 435 LGVNLKNFPTSA 446 (510)
Q Consensus 435 lG~Nl~n~p~s~ 446 (510)
.|.|++++|...
T Consensus 276 yGMNf~~mP~~~ 287 (316)
T PRK11085 276 YGMNFEFMPELK 287 (316)
T ss_pred cccccCCCCCCC
Confidence 488999999765
No 13
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=39.39 E-value=51 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCc
Q 010453 422 ILPLFGFIIGLLRLGVNLKNFPTSAVP 448 (510)
Q Consensus 422 lapll~Lli~W~~lG~Nl~n~p~s~~~ 448 (510)
++|.-++.+. .|.|++++|..-.+
T Consensus 272 flPpTlIagi---yGMNf~~mPel~~~ 295 (322)
T COG0598 272 FLPPTLITGF---YGMNFKGMPELDWP 295 (322)
T ss_pred HHhhHHHHcc---cccCCCCCcCCCCc
Confidence 4444344333 48899999977643
No 14
>PF07608 DUF1571: Protein of unknown function (DUF1571); InterPro: IPR011465 This is a family of paralogous proteins found in Planctomycetacia and Betaproteobacteria.
Probab=36.62 E-value=97 Score=31.08 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=33.2
Q ss_pred CcceEEEEEEEEcCCCCCCCceeEEEEEEe-C--CceEEEEEecc
Q 010453 279 HLQKLRLSFQMSTPLGNAFKPHQAFLRLRH-E--TKVEHTFVVGS 320 (510)
Q Consensus 279 ~~~~L~l~F~l~~~~g~~~~PhQafL~L~~-~--tg~e~~fv~k~ 320 (510)
..|.+.+++.-...+|....|+++++++-. . .|+|++|+...
T Consensus 13 ~~~~m~~KvR~~~~~~~~~~PlsVY~Kwl~p~~~~GrEvIY~eg~ 57 (213)
T PF07608_consen 13 EPQTMELKVRHRSNDGRDVQPLSVYLKWLPPGAHAGREVIYVEGQ 57 (213)
T ss_pred CCcEEEEEEEEecccCCCCCCeEEEEEecCCCCCCCcEEEEeccc
Confidence 457788885544467888999999999988 4 79999998643
No 15
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=35.30 E-value=79 Score=35.36 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchHHHHHHHH--HHHHHHHHHH
Q 010453 409 PPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLG--IAAVLLLYVL 468 (510)
Q Consensus 409 PP~iVS~~Ft~lvlapl----------------l~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~s--L~gie~Lf~~ 468 (510)
-|.+++++..|+++.|. +++...++..|..++ .+..... ....+...+ +..+.+.+..
T Consensus 30 ~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK10669 30 ISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKS--IAIPGAIAQIAVATLLGMALS 107 (558)
T ss_pred CCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888777663 234444455665444 4322211 111111111 2223445566
Q ss_pred HhhccChHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 010453 469 FWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 501 (510)
Q Consensus 469 YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la 501 (510)
|++++++-+.+.+...++.-..-.--|.|++..
T Consensus 108 ~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~ 140 (558)
T PRK10669 108 AVLGWSLMTGIVFGLCLSTASTVVLLRALEERQ 140 (558)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999988888887777766666667776644
No 16
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=34.65 E-value=3.1e+02 Score=25.64 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=30.3
Q ss_pred eccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 154 TVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 154 dvlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
|=.|+|++..++.+.....+ . ++|..-..-..+.++..|.++ ..+|+|.+.+..
T Consensus 11 dg~G~pv~g~~I~L~A~~tS--~-~Vv~~t~as~~t~~~G~Ys~~-----~epG~Y~V~l~~ 64 (134)
T PF08400_consen 11 DGAGKPVPGCTITLKARRTS--S-TVVVGTVASVVTGEAGEYSFD-----VEPGVYRVTLKV 64 (134)
T ss_pred CCCCCcCCCCEEEEEEccCc--h-heEEEEEEEEEcCCCceEEEE-----ecCCeEEEEEEE
Confidence 55689998888887443222 2 222211111122233468875 458999998765
No 17
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=33.60 E-value=90 Score=24.92 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=31.7
Q ss_pred ceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEE
Q 010453 147 SLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 214 (510)
Q Consensus 147 ~l~v~Vtdvlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 214 (510)
+|+=+|.|--|+|++.++|.+... ... . ......|.++ .|.+..+ .+|.|.+.+.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~---~~~-~----~~~~~Td~~G-~f~~~~l----~~g~Y~l~v~ 55 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQ---DGG-T----VYTTTTDSDG-RFSFEGL----PPGTYTLRVS 55 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET-----TTT-E----CCEEE--TTS-EEEEEEE-----SEEEEEEEE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEe---eCC-C----EEEEEECCCc-eEEEEcc----CCEeEEEEEE
Confidence 366789999999999999997432 111 1 1122233344 6888733 3599998753
No 18
>COG4420 Predicted membrane protein [Function unknown]
Probab=30.23 E-value=1.2e+02 Score=30.02 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-CCCCCCCcchHHHHHHHHHHHHH
Q 010453 418 LVLTILPLFGFIIGLLRLGVNLK-NFPTSAVPATFAVIFHLGIAAVL 463 (510)
Q Consensus 418 t~lvlapll~Lli~W~~lG~Nl~-n~p~s~~~~~~~i~F~~sL~gie 463 (510)
+...+..+.++|+.|..+..-.. +.|+.+-|+++--+++.++++|.
T Consensus 57 sw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~Aaiq 103 (191)
T COG4420 57 SWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQ 103 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHH
Confidence 55566777788899975443222 46777755444333334444433
No 19
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=29.59 E-value=1.4e+02 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=29.9
Q ss_pred HHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 010453 465 LYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 501 (510)
Q Consensus 465 Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la 501 (510)
..+.||.++++-+.+-+.+.++.-..-...+.|+++.
T Consensus 91 ~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~ 127 (273)
T TIGR00932 91 LLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERG 127 (273)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 3467889999999999998888877777778887764
No 20
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=29.15 E-value=2.8e+02 Score=24.90 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=40.6
Q ss_pred ceEEEEEEEEcCCCCCCCceeEEEEEEe--CCceEEEEEecc-CCceEEEEeccccchhhhhccCccEEEEEE
Q 010453 281 QKLRLSFQMSTPLGNAFKPHQAFLRLRH--ETKVEHTFVVGS-SGKKFEITLDFLGLVEKFFYLSGRYDIQLT 350 (510)
Q Consensus 281 ~~L~l~F~l~~~~g~~~~PhQafL~L~~--~tg~e~~fv~k~-s~k~yk~~ld~~~l~~~f~~~Sg~y~v~LI 350 (510)
+.+.+. +++.+|.+..+..+.+.|.+ ..+.+..+..+. ....|...++. ..+|.+.+++-
T Consensus 69 ~~~~i~--~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~--------~~~G~W~l~l~ 131 (146)
T PF05751_consen 69 NSLTIR--LTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPL--------LKKGRWYLRLD 131 (146)
T ss_pred CeEEEE--EEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCC--------CCCccEEEEEE
Confidence 445555 55678888999999999988 556666665543 33357766432 24789999883
No 21
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.98 E-value=3.3e+02 Score=32.46 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred eecCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHHhhc------
Q 010453 400 HIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAV-PATFAVIFHLGIAAVLLLYVLFWLK------ 472 (510)
Q Consensus 400 HiFR~peKrPP~iVS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~-~~~~~i~F~~sL~gie~Lf~~YWl~------ 472 (510)
++|+=|= =-.+.+.++++++++.+..+++-|..-|+.+........ ..-.|+..++++ -+..+-+-||+.
T Consensus 151 YvF~LPf--~~~l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~-~~l~~a~~y~L~ry~Ll~ 227 (774)
T PF03699_consen 151 YVFSLPF--LRFLQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLAL-FFLLKAVGYWLDRYELLY 227 (774)
T ss_pred eeehhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHee
Confidence 4565541 112455666666666666777777766666543222211 111232222222 233444567764
Q ss_pred -----------cChHHHHHHHHHhhHhhhhhhhHHHHHHHHHhhh
Q 010453 473 -----------LDLFTTLKTLCFLGVFLMVVGHRTLSHLASASAK 506 (510)
Q Consensus 473 -----------lnmFqTL~yl~~Lg~~t~l~G~raLr~la~~r~k 506 (510)
.++--+|+...++++.+++++--++-.+..++.|
T Consensus 228 s~~g~v~GagYtDv~a~Lp~~~il~~i~~~~A~~~~~~~~~~~~~ 272 (774)
T PF03699_consen 228 SQRGVVYGAGYTDVHATLPAYTILAVIALLCAVLFFINIFRRNWR 272 (774)
T ss_pred cCCCeEeCCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3455678888888888888887777666555433
No 22
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=28.32 E-value=19 Score=31.87 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCceeeecCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 010453 391 RYGPKAEITHIFRAP---EKRPPQELSLAFLVLTILPLFGFII 430 (510)
Q Consensus 391 ry~pkPEI~HiFR~p---eKrPP~iVS~~Ft~lvlapll~Lli 430 (510)
.|.|+|+=.|-=+.| ..||.+.+..+|+.++++.+++.++
T Consensus 6 sY~PLP~~~~~~~~~~~~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 6 SYTPLPDSSESAPGPGGRRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------------------------------
T ss_pred ccCCCCCCCcccCCCCcCcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 488888888887776 7788889988888877666555544
No 23
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.38 E-value=1.7e+02 Score=26.47 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 010453 406 EKRPPQELSLAFLVLTILPLFGFIIGLLRLG 436 (510)
Q Consensus 406 eKrPP~iVS~~Ft~lvlapll~Lli~W~~lG 436 (510)
.|.|=+.|.+++.++++-..++.++.+...|
T Consensus 37 ~k~pwK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 37 VKIPWKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555678888888888777776666666555
No 24
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.71 E-value=1.8e+02 Score=28.36 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhc
Q 010453 403 RAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWLK 472 (510)
Q Consensus 403 R~peKrPP~iVS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~Lf~~YWl~ 472 (510)
....+|++.+-..++.++..+.|++++..- .+ +|...+|.+...+++ ++|.-.+...||++
T Consensus 138 ~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~-----~~--lp~~inp~l~~~~~i--iig~i~~~~~~~lk 198 (206)
T PF06570_consen 138 KKKKKRPSWWKYILISVLAMVLWIVIFVLT-----SF--LPPVINPVLPPWVYI--IIGVIAFALRFYLK 198 (206)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHH-----HH--ccccCCcCCCHHHHH--HHHHHHHHHHHHHH
No 25
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=25.68 E-value=1.3e+02 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=19.7
Q ss_pred HHhhHhhhhhhhHHHHHHHHHh
Q 010453 483 CFLGVFLMVVGHRTLSHLASAS 504 (510)
Q Consensus 483 ~~Lg~~t~l~G~raLr~la~~r 504 (510)
.+.+++.++.|+.++|++.+++
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccC
Confidence 6789999999999999998866
No 26
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=25.44 E-value=1.4e+02 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhccChHHHHHHHHHhhHhhhhh
Q 010453 451 FAVIFHLGIAAVLLLYV-LFWLKLDLFTTLKTLCFLGVFLMVV 492 (510)
Q Consensus 451 ~~i~F~~sL~gie~Lf~-~YWl~lnmFqTL~yl~~Lg~~t~l~ 492 (510)
|-..|-+|++|.+.+|+ +|-+|++.+-.+......|...++.
T Consensus 18 Yl~~faGgll~~~il~~iLYi~Gv~~~ici~~~~~~~~~lv~~ 60 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILFVILYIAGVNQWICIGFGVVSGSLLVWQ 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhhhhee
Confidence 67788899999777765 5556999999999998888887764
No 27
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=25.00 E-value=3.1e+02 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=40.2
Q ss_pred CceEEEEEeccCCCCCCceEEE--EEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEeec
Q 010453 146 DSLKVKVNTVLGSHAPPLTVTL--VRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLVQ 218 (510)
Q Consensus 146 ~~l~v~Vtdvlg~~l~~~~V~~--~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~~ 218 (510)
..+.++++|--|+|+.+.++.+ .+......+-+. +|+.. ++..|..... .+..|.|.+.+.+...
T Consensus 69 ~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~-----~l~~~-~~g~y~~~~~--~~~~G~W~l~l~~~~~ 135 (146)
T PF05751_consen 69 NSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTL-----TLTES-APGVYRAPVP--LLKKGRWYLRLDWEPG 135 (146)
T ss_pred CeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeE-----EeeEC-CCceEEEEcC--CCCCccEEEEEEEecC
Confidence 7799999999999987765554 333322222111 22222 3337888643 5689999998866443
No 28
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=24.73 E-value=82 Score=29.26 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=22.6
Q ss_pred ceeeecCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-Hhc--ccCCCCCCC
Q 010453 397 EITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLL-RLG--VNLKNFPTS 445 (510)
Q Consensus 397 EI~HiFR~peKrPP~iVS~~Ft~lvlapll~Lli~W~-~lG--~Nl~n~p~s 445 (510)
|++|++|.|. .+ .+..++++.|++..++.+. ..+ -..+++|.+
T Consensus 2 E~~~~~r~~~-----~~-~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpva 47 (164)
T TIGR03061 2 ELKRLRKNKL-----LR-IALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVA 47 (164)
T ss_pred hHHHhhcCcH-----HH-HHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEE
Confidence 7788888762 22 2333445667765544443 322 234566544
No 29
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=24.45 E-value=1.2e+02 Score=27.37 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=36.2
Q ss_pred eEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEe
Q 010453 148 LKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKML 216 (510)
Q Consensus 148 l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~ 216 (510)
|..+|-| ..|+|+..+.|.+.+... +.+-..+... ..+.|+..=...+......+|.|++.|.+.
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~--~~~~~~l~~~--~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDS--DGSWTLLAEG--VTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEET--TSCEEEEEEE--EBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecC--CCCcEEEEEE--EECCCCcccccccccccccceEEEEEEEHH
Confidence 5566664 579999999999966542 2222223322 234454321122335678899999999873
No 30
>PRK00068 hypothetical protein; Validated
Probab=24.43 E-value=6.4e+02 Score=30.89 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=50.0
Q ss_pred eeecCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCCCCCcchHHHHHHHHHHHHH--HHHHHHhhc
Q 010453 399 THIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLG----VNLKNFPTSAVPATFAVIFHLGIAAVL--LLYVLFWLK 472 (510)
Q Consensus 399 ~HiFR~peKrPP~iVS~~Ft~lvlapll~Lli~W~~lG----~Nl~n~p~s~~~~~~~i~F~~sL~gie--~Lf~~YWl~ 472 (510)
-++|+=|== -.+++.+|++++++-+..+++-.+.-| .++.......+. .+-.-+..++|+. +.-+-||+.
T Consensus 158 FY~F~LPf~--~~l~~~l~~~~~~~~i~~~~~~~l~g~~~~~~~l~~~~~~~~~--~ar~hl~~l~~~~~ll~a~~ywL~ 233 (970)
T PRK00068 158 FYAFKLPFY--RSLLSYLLVLLILAFIITLIAHYILGGIRKGIRLAGRKGGISR--FARKQLAVLAGLLMLLKAVGYWLD 233 (970)
T ss_pred EEEEehHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcCCCH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356766511 124555665555555555544344434 555432222211 1122222333333 334558875
Q ss_pred -----------------cChHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q 010453 473 -----------------LDLFTTLKTLCFLGVFLMVVGHRTLSHLAS 502 (510)
Q Consensus 473 -----------------lnmFqTL~yl~~Lg~~t~l~G~raLr~la~ 502 (510)
.++--+|+...+|.+++++++--++-.+..
T Consensus 234 ry~Ll~s~~g~v~GA~YTDv~a~Lpa~~iL~~ia~i~a~~~~~~~~~ 280 (970)
T PRK00068 234 RYNLLYSTRGVFTGASYTDINAVLPAKLILLVIAVICAIAVFSSIVL 280 (970)
T ss_pred hhhheecCCCEEecCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245557777777877777777666655443
No 31
>smart00095 TR_THY Transthyretin.
Probab=24.33 E-value=3.6e+02 Score=24.75 Aligned_cols=65 Identities=25% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCceEEEEEe-ccCCCCCCceEEEEEeEeecCCC-ceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 145 KDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARD-NSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 145 ~~~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~-~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+++|..+|-| ..|+|...+.|.|.+... .+. .. +... ..+.|+..-.+ +......+|.|++.|.+
T Consensus 3 ~~plTtHVLDt~~G~PAagv~V~L~~~~~--~~~w~~-la~~--~Tn~DGR~~~l-l~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 3 KCPLMVKVLDAVRGSPAVNVAVKVFKKTE--EGTWEP-FASG--KTNESGEIHEL-TTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCeEEEEEECCCCccCCCCEEEEEEeCC--CCceEE-EEEE--ecCCCccccCc-cCcccccceEEEEEEeh
Confidence 5678888886 479999999999854310 111 22 2222 13345543221 11345678999999987
No 32
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.00 E-value=3.6e+02 Score=30.99 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHHHHhh
Q 010453 452 AVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASASA 505 (510)
Q Consensus 452 ~i~F~~sL~gie~Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la~~r~ 505 (510)
..+|.+.+....+.+..||....+...+.....+....++.|.|.+.+....+.
T Consensus 58 ~~i~~a~~~~~~~~l~~~~~~~~~~~s~~~~~~~l~~~~i~~~R~~~R~~~~~~ 111 (588)
T COG1086 58 FIILKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDAL 111 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555777777777899999999999999999999999988777665
No 33
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=23.25 E-value=5.8e+02 Score=28.21 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=47.2
Q ss_pred eeecC-CcceEEEEEEEEcCCCCCCCceeEEEEEEeC--CceEEEEEeccCCceEEEEeccccchhhhhccCccEEEEEE
Q 010453 274 SVSAN-HLQKLRLSFQMSTPLGNAFKPHQAFLRLRHE--TKVEHTFVVGSSGKKFEITLDFLGLVEKFFYLSGRYDIQLT 350 (510)
Q Consensus 274 ~L~ad-~~~~L~l~F~l~~~~g~~~~PhQafL~L~~~--tg~e~~fv~k~s~k~yk~~ld~~~l~~~f~~~Sg~y~v~LI 350 (510)
.+.++ ....+.+.|+.+ + -.|-++.|.+... .|...++..........+.+... + ...-.+.++.+
T Consensus 106 ~l~~n~~~~~~eL~vst~--n---dtiIr~vlIfaEglF~gEs~v~~~~~pss~l~ipL~~~---k---d~~vdL~iKv~ 174 (431)
T PF14782_consen 106 SLSVNPETGCVELVVSTS--N---DTIIRAVLIFAEGLFEGESHVPSPQNPSSTLRIPLRPP---K---DVPVDLHIKVF 174 (431)
T ss_pred EEeeCCcCCcEEEEEEeC--C---CcEEEEEEEEeccccCCccccccCCCCCCeEEEEeeCC---C---CCceEEEEEEE
Confidence 44443 355666665443 2 3677888888761 24444432222223344444321 1 23456799999
Q ss_pred EecccccCCccccceeEEEeCCC
Q 010453 351 VGDAVMENSLLRDIGYVELDLPE 373 (510)
Q Consensus 351 VGD~~~~~p~~~~l~~v~L~f~~ 373 (510)
||.. ++-.+.+..++..+|.
T Consensus 175 VG~~---~s~~~hVfE~t~~LPr 194 (431)
T PF14782_consen 175 VGYP---NSNQFHVFEVTRQLPR 194 (431)
T ss_pred EcCC---CCceEEEEeccccCCc
Confidence 9976 3556677766666663
No 34
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.12 E-value=1e+02 Score=29.30 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHhhHhhhhhhhHHHHHHHHHhhhhh
Q 010453 474 DLFTTLKTLCFLGVFLMVVGHRTLSHLASASAKLK 508 (510)
Q Consensus 474 nmFqTL~yl~~Lg~~t~l~G~raLr~la~~r~k~~ 508 (510)
+.|.|-.|..+++++..+.+--+|..+-.+|+|+.
T Consensus 25 sffsthm~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44566666777777777777777777777777654
No 35
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=22.52 E-value=2.5e+02 Score=24.18 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=34.0
Q ss_pred cCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEecc--ccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 144 KKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQ--ELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 144 ~~~~l~v~Vtdvlg~~l~~~~V~~~~~~~~~~~~~~v~~~~--~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
..-.|.++|.|--|+|++...|... ...+. .. ++.. ....+.++ .++..+.. ...|.|.+...+
T Consensus 23 ~~~tltatV~D~~gnpv~g~~V~f~---~~~~~-~~-l~~~~~~~~Td~~G-~a~~tlts--t~aG~~~VtA~~ 88 (100)
T PF02369_consen 23 DTNTLTATVTDANGNPVPGQPVTFS---SSSSG-GT-LSPTNTSATTDSNG-IATVTLTS--TKAGTYTVTATV 88 (100)
T ss_dssp S-EEEEEEEEETTSEB-TS-EEEE-----EESS-SE-ES-CEE-EEE-TTS-EEEEEEE---SS-EEEEEEEEE
T ss_pred CcEEEEEEEEcCCCCCCCCCEEEEE---EcCCC-cE-EecCccccEECCCE-EEEEEEEe--cCceEEEEEEEE
Confidence 3578999999999999999999971 11222 22 3333 22233333 45555443 367888876544
No 36
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=21.99 E-value=3.4e+02 Score=25.80 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=21.9
Q ss_pred HHHHHHHHhhccC----hHHHHHHHHHhhHhhhhhhh
Q 010453 462 VLLLYVLFWLKLD----LFTTLKTLCFLGVFLMVVGH 494 (510)
Q Consensus 462 ie~Lf~~YWl~ln----mFqTL~yl~~Lg~~t~l~G~ 494 (510)
+.+.+.-.+.+-+ ..+++-...+.+..++..|+
T Consensus 137 ~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg~ 173 (175)
T cd02437 137 ILGLVIGKISKINVAISFVWAVGMVITGISLVFSVGK 173 (175)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556777 56677777777777887774
No 37
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=21.91 E-value=1.9e+02 Score=21.49 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=13.4
Q ss_pred CceeEEEEEEEeeccccc
Q 010453 205 DVGEYIFVFKMLVQDSEQ 222 (510)
Q Consensus 205 ~~G~Y~~~~~v~~~d~~~ 222 (510)
+||.|.+.+.+.....++
T Consensus 11 ~PG~Y~l~~~a~~~~~~G 28 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDG 28 (41)
T ss_pred CCeEEEEEEEEEEEeCCC
Confidence 589999999886654444
No 38
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=21.79 E-value=3e+02 Score=22.41 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhHhhhh
Q 010453 451 FAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMV 491 (510)
Q Consensus 451 ~~i~F~~sL~gie~Lf~~YWl~lnmFqTL~yl~~Lg~~t~l 491 (510)
.+++|=++.+.+-.-...+|++.++.+.+.....+++.+++
T Consensus 9 hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~ 49 (67)
T PF05232_consen 9 HAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMV 49 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999999999888877776553
No 39
>COG4125 Predicted membrane protein [Function unknown]
Probab=21.78 E-value=2.5e+02 Score=26.53 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHHHHh
Q 010453 451 FAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 504 (510)
Q Consensus 451 ~~i~F~~sL~gie~Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la~~r 504 (510)
-+++|-+|++.+..=+.-+|++.+++|++-. =+|++.|+---.++=..+-+|
T Consensus 83 HAv~FE~gliv~lvP~iAw~L~isL~eAl~L--dig~~lffl~Ytf~fNwaYD~ 134 (149)
T COG4125 83 HAVGFELGLIVILVPLIAWWLGISLLEALVL--DIGLILFFLPYTFLFNWAYDR 134 (149)
T ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999864 345555555555554444433
No 40
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=21.71 E-value=2.9e+02 Score=25.47 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=37.2
Q ss_pred CceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 146 DSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 146 ~~l~v~Vtdv-lg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
..|..+|-|. -|+|.+.++|.+-+.. .+..-.+... ..+.|+..=.-.........|.|++.|.+
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~---~~~~~~l~t~--~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~ 74 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLE---GNQWELLKTV--VTNADGRIDAPLLAGETLATGIYELVFHT 74 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEec---CCcceeeeEE--EecCCCcccccccCccccccceEEEEEEc
Confidence 4677888764 5899988999986553 2211111111 12334321111122357789999999987
No 41
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.26 E-value=2.4e+02 Score=32.09 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchHHHHHHHHHHHH-----HHH
Q 010453 409 PPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLGIAAV-----LLL 465 (510)
Q Consensus 409 PP~iVS~~Ft~lvlapl----------------l~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~sL~gi-----e~L 465 (510)
-|.++.++..|+++.|. +++...++.+|..++ .+-... ..+|..|..++ .+.
T Consensus 29 ~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~-----~~~~~~g~~~v~~t~~~~~ 103 (601)
T PRK03659 29 IGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR-----RSIFGVGAAQVLLSAAVLA 103 (601)
T ss_pred CChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 35678888888877772 234444555665443 332111 11222222211 112
Q ss_pred HHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 010453 466 YVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 501 (510)
Q Consensus 466 f~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la 501 (510)
...||++++....+-....++.-..-..-+.|++..
T Consensus 104 ~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 104 GLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 245678888655555554444333333456666544
No 42
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.06 E-value=2.3e+02 Score=35.57 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChH
Q 010453 452 AVIFHLGIAAVLLLYVLFWLKLDLF 476 (510)
Q Consensus 452 ~i~F~~sL~gie~Lf~~YWl~lnmF 476 (510)
.+.|+.|++++.+.++++|..|-+|
T Consensus 74 ~L~~LFGl~AYLLP~LL~~~a~~l~ 98 (1355)
T PRK10263 74 TLFFIFGVMAYTIPVIIVGGCWFAW 98 (1355)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5566777777776666666655544
No 43
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=21.00 E-value=4.5e+02 Score=32.89 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccCh--HHHHHHHHHhhHhh
Q 010453 412 ELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWLKLDL--FTTLKTLCFLGVFL 489 (510)
Q Consensus 412 iVS~~Ft~lvlapll~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~Lf~~YWl~lnm--FqTL~yl~~Lg~~t 489 (510)
+.+.+...+.++-++++++.|+.+|.|. ..+ ..+++-+.++-+..+-+|+|.|.++ ....-....+|+ +
T Consensus 1046 i~~~~~~~l~~a~~~v~~V~~l~l~l~~---~~a-----liv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi-s 1116 (1204)
T TIGR00917 1046 IWSDALINLGISLGAIFIVTLVLLGLNA---LSA-----VNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI-S 1116 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc---hhH-----HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh-H
Confidence 4445555666677777778888777655 111 2344555555566666677776644 777777777787 5
Q ss_pred hhhhhHHHHHHH
Q 010453 490 MVVGHRTLSHLA 501 (510)
Q Consensus 490 ~l~G~raLr~la 501 (510)
+-...+..|+..
T Consensus 1117 V~f~~hI~~~f~ 1128 (1204)
T TIGR00917 1117 IEFCSHINAQFS 1128 (1204)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 44
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=20.83 E-value=4.4e+02 Score=24.18 Aligned_cols=67 Identities=24% Similarity=0.216 Sum_probs=40.3
Q ss_pred cCCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 144 KKDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 144 ~~~~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
.+++|..+|-| ..|+|...+.|.+.+... ++.-..+... ..+.|+..=.+ +......+|.|++.|.+
T Consensus 5 ~~~~ittHVLDt~~G~PAaGV~V~L~~~~~--~~~w~~l~~~--~Tn~DGR~~~l-l~~~~~~~G~Y~l~F~t 72 (121)
T cd05821 5 SKCPLMVKVLDAVRGSPAANVAVKVFKKTA--DGSWEPFASG--KTTETGEIHGL-TTDEQFTEGVYKVEFDT 72 (121)
T ss_pred CCCCcEEEEEECCCCccCCCCEEEEEEecC--CCceEEEEEE--EECCCCCCCCc-cCccccCCeeEEEEEeh
Confidence 36789999986 579999999999854310 1211122222 23445543111 11335678999999987
No 45
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.27 E-value=2.9e+02 Score=31.72 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchHHHHHHHHH-----HHHHH
Q 010453 408 RPPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLGI-----AAVLL 464 (510)
Q Consensus 408 rPP~iVS~~Ft~lvlapl----------------l~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~sL-----~gie~ 464 (510)
+-|.+++++.+|+++-|. +++...++.+|..++ .+-... ..+|..|+ .+..+
T Consensus 28 ~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~-----~~~~~~g~~qv~~~~~~~ 102 (621)
T PRK03562 28 GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR-----RSIFGGGALQMVACGGLL 102 (621)
T ss_pred CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 346788888888877762 233444455665443 332111 11121111 11122
Q ss_pred HHHHHhhccChHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 010453 465 LYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 501 (510)
Q Consensus 465 Lf~~YWl~lnmFqTL~yl~~Lg~~t~l~G~raLr~la 501 (510)
....||++++....+-..+.++.-.--..-+.|++..
T Consensus 103 ~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 103 GLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455788888776666665554332223356665543
Done!