Query 010453
Match_columns 510
No_of_seqs 154 out of 208
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 54.5 17 0.00058 36.4 6.0 14 435-448 299-312 (339)
2 4ank_A Transthyretin; hormone 53.7 14 0.00047 33.6 4.6 67 143-215 27-95 (147)
3 2iub_A CORA, divalent cation t 33.2 19 0.00066 36.4 2.5 13 434-446 322-334 (363)
4 1qfh_A Protein (gelation facto 31.9 3E+02 0.01 25.1 11.9 54 300-362 135-190 (212)
5 1wlh_A Gelation factor; ABP-12 26.3 4.4E+02 0.015 25.3 13.3 52 301-361 235-288 (311)
6 2g2n_A Transthyretin-like prot 21.5 1.3E+02 0.0043 26.1 5.2 65 145-215 3-68 (114)
7 3qva_A Transthyretin-like prot 20.7 1.2E+02 0.0039 26.5 4.7 59 146-215 10-69 (116)
8 3d33_A Domain of unknown funct 20.1 3.4E+02 0.011 23.0 7.5 67 280-369 37-107 (108)
9 3rgh_A Filamin-A; cell adhesio 20.1 3.5E+02 0.012 21.9 7.7 52 302-361 41-94 (100)
10 1x1i_A Xanthan lyase; alpha/al 18.7 1.5E+02 0.0051 33.2 6.3 74 22-101 185-265 (752)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=54.49 E-value=17 Score=36.39 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.3
Q ss_pred hcccCCCCCCCCCc
Q 010453 435 LGVNLKNFPTSAVP 448 (510)
Q Consensus 435 lG~Nl~n~p~s~~~ 448 (510)
.|.|+.++|....+
T Consensus 299 yGMNf~~mPel~~~ 312 (339)
T 4ev6_A 299 YGMNFSYLPLANNP 312 (339)
T ss_dssp TTCCCSCCTTSSCT
T ss_pred ccCcCCCCCCccCc
Confidence 48899999987644
No 2
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=53.71 E-value=14 Score=33.56 Aligned_cols=67 Identities=27% Similarity=0.228 Sum_probs=40.8
Q ss_pred ccCCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCc-eEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 143 TKKDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDN-SIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 143 ~~~~~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~-~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
..+++|..+|-| ..|.|...+.|.+.+. ..++. ..+... +.+.|+..-.+ ....+...|.|++.|.+
T Consensus 27 ~sk~PLTtHVLDt~~G~PA~gv~V~L~~~---~~~~~~~~l~~~--~Td~DGR~~~l-l~~~~~~~G~Y~L~F~t 95 (147)
T 4ank_A 27 ESKCPLMVKVLDAVRGSPAINVAVHVFRK---AADDTWEPFASG--KTSESGELHGL-TTEEEFVEGIYKVEIDT 95 (147)
T ss_dssp ---CCEEEEEEETTTTEECCSCEEEEEEE---CTTSCEEEEEEE--ECCTTSEECCS-CCTTTCCSEEEEEEECH
T ss_pred CCCCCeEEEEEeCCCCcCCCCCEEEEEEE---CCCCCeEEEEEE--EeCCCCCCCCC-CCccccCCceEEEEEEH
Confidence 347889999998 7899999999998654 22221 112222 23445543221 22356778999999876
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=33.23 E-value=19 Score=36.40 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=1.7
Q ss_pred HhcccCCCCCCCC
Q 010453 434 RLGVNLKNFPTSA 446 (510)
Q Consensus 434 ~lG~Nl~n~p~s~ 446 (510)
..|.|+.++|...
T Consensus 322 iyGMNf~~mPel~ 334 (363)
T 2iub_A 322 IYGMNFEYMPELR 334 (363)
T ss_dssp SCC----------
T ss_pred hhcccCCCCCccc
Confidence 3588999999865
No 4
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=31.88 E-value=3e+02 Score=25.11 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=31.1
Q ss_pred eeEEEEEEeCCceEEEEEeccCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Cccc
Q 010453 300 HQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLR 362 (510)
Q Consensus 300 hQafL~L~~~tg~e~~fv~k~s~k-~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~-p~~~ 362 (510)
....+++....+ .+.-.+.+.++ .|.++... ...|.|.+++-+++..+.. ||..
T Consensus 135 ~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p--------~~~G~y~v~V~~~g~~I~gSPF~v 190 (212)
T 1qfh_A 135 DKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFKQ 190 (212)
T ss_dssp CCEEEEEEECCS-EEEEEEEECSSSEEEEEEEE--------ESSEEEEEEEEETTEECBTCSEEE
T ss_pred CcEEEEEECCCC-ceeeEEEECCCCEEEEEEEc--------CCCEEEEEEEEECCEECCCCCeEE
Confidence 345555556444 33333434332 47665422 3468999999998887764 5543
No 5
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=26.32 E-value=4.4e+02 Score=25.32 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=31.8
Q ss_pred eEEEEEEeCCceEEEEEeccCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Ccc
Q 010453 301 QAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLL 361 (510)
Q Consensus 301 QafL~L~~~tg~e~~fv~k~s~k-~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~-p~~ 361 (510)
...+.+...+| +....+.+.++ .|.++... ...|.|.+++-+++..+.. ||.
T Consensus 235 ~l~v~i~~p~g-~~~~~v~d~~~G~y~v~y~p--------~~~G~y~i~V~~~g~~I~gsPf~ 288 (311)
T 1wlh_A 235 KFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFK 288 (311)
T ss_dssp CEEEEEESCCS-EEEEEEEECSSSEEEEEEEE--------ECSEEEEEEEEETTEECTTCSEE
T ss_pred cEEEEEECCCC-CceeEEEECCCCEEEEEEEC--------CCCEeEEEEEEECCEECCCCCEE
Confidence 34555566445 54444444322 47665432 3479999999999988764 554
No 6
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=21.54 E-value=1.3e+02 Score=26.05 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=38.6
Q ss_pred CCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 145 KDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 145 ~~~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+..|..+|-| ..|.|...+.|.+.+. ..++-..+... ..+.|+..-.+. ......+|.|++.|.+
T Consensus 3 ~~~lstHVLDt~~G~PAagv~V~L~~~---~~~~~~~l~~~--~Tn~DGR~~~l~-~~~~~~~G~Y~l~F~t 68 (114)
T 2g2n_A 3 QNILSVHILNQQTGKPAADVTVTLEKK---ADNGWLQLNTA--KTDKDGRIKALW-PEQTATTGDYRVVFKT 68 (114)
T ss_dssp -CCEEEEEEETTTTEECCSCEEEEEEE---CSSSEEEEEEE--ECCTTSEESCCS-CSSCCCSEEEEEEECH
T ss_pred CCCeEEEEecCCCcCCCCCCEEEEEEe---CCCCcEEEEEE--ecCCCCcccccc-CCCCCCceEEEEEEEh
Confidence 4668888886 5799999999998654 22211112111 234454321111 2346778999999876
No 7
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.65 E-value=1.2e+02 Score=26.47 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=38.5
Q ss_pred CceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 146 DSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 146 ~~l~v~Vtdv-lg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
..|..+|-|. .|.|+..+.|.+.+.. ..+.+ . ..+.|+.. -++.+....+|.|++.|.+
T Consensus 10 ~~lstHVLDt~~G~PAagv~V~L~~~~------~~l~~-~--~Tn~DGR~--~~l~~~~~~~G~Y~L~F~t 69 (116)
T 3qva_A 10 STLSTHILDISTGTPAEGVTVSLSREG------ETLAN-L--VTNAQGRI--ATFSAAPLPAGRYCLTAET 69 (116)
T ss_dssp BCEEEEEEETTTTEECTTCEEEEEETT------EEEEE-E--ECCTTSEE--CCSCSSCBCSSEEEEEECH
T ss_pred CCeeeEEeecCCCcCCCCCEEEEEEcc------EeEEE-e--ccCCCCCc--cccccccCCCceEEEEEeH
Confidence 4588999876 6999999999986531 11111 1 23345533 1234567889999999876
No 8
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=20.14 E-value=3.4e+02 Score=23.03 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=43.0
Q ss_pred cceEEEEEEEEcCCCCCCCceeEEEEEEe-CCceEEEEE--e-ccCCceEEEEeccccchhhhhccCccEEEEEEEeccc
Q 010453 280 LQKLRLSFQMSTPLGNAFKPHQAFLRLRH-ETKVEHTFV--V-GSSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAV 355 (510)
Q Consensus 280 ~~~L~l~F~l~~~~g~~~~PhQafL~L~~-~tg~e~~fv--~-k~s~k~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~ 355 (510)
.+.|.+.|. . .-.++.+++.+ ++|. ++|- + ...+..+.++|+- ..+|.|.+.+.-+
T Consensus 37 ~~~L~I~F~--~------~~~~vtItI~~~~tG~-iVY~~~v~~~~~~~~~I~L~~--------~~~G~Y~L~i~~~--- 96 (108)
T 3d33_A 37 GYLLTLKNA--S------PDRDMTIRITDMAKGG-VVYENDIPEVQSAYITISIAN--------FPAEEYKLEITGT--- 96 (108)
T ss_dssp TTEEEEEES--S------CCSEEEEEEEETTTCC-EEEEEEECGGGTTEEEEECTT--------SCSEEEEEEEEEE---
T ss_pred CCEEEEEEC--C------cCCCEEEEEEECCCCc-EEEEEeecCCCCcEEEEEcCC--------ccCceEEEEEEeC---
Confidence 457888872 1 23489999996 5554 4563 3 2334566777642 3489999999887
Q ss_pred ccCCccccceeEEE
Q 010453 356 MENSLLRDIGYVEL 369 (510)
Q Consensus 356 ~~~p~~~~l~~v~L 369 (510)
.-.|-.|+++|
T Consensus 97 ---~~~~l~G~F~i 107 (108)
T 3d33_A 97 ---PSGHLTGYFTK 107 (108)
T ss_dssp ---SSCEEEEEEEE
T ss_pred ---CCCEEEEEEEe
Confidence 34566666655
No 9
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=20.08 E-value=3.5e+02 Score=21.86 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=28.8
Q ss_pred EEEEEEeCCceEEEEEeccCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Ccc
Q 010453 302 AFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLL 361 (510)
Q Consensus 302 afL~L~~~tg~e~~fv~k~s~k-~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~-p~~ 361 (510)
..+.+.+..+.++.-.+.++++ .|.++... ...|.|.+++.+++..+.. ||.
T Consensus 41 l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p--------~~~G~y~i~V~~~g~~V~gSPf~ 94 (100)
T 3rgh_A 41 LTIEICSEAGLPAEVYIQDHGDGTHTITYIP--------LCPGAYTVTIKYGGQPVPNFPSK 94 (100)
T ss_dssp EEEEEECTTSCBCEEEEEECSSSEEEEEEEC--------CSSEEEEEEEEETTEECTTCSEE
T ss_pred EEEEEECCCCCEeEEEEEeCCCCEEEEEEEe--------CCCeeEEEEEEECCEECCCCCEE
Confidence 4444555444333333444433 46655421 3368899999998877653 554
No 10
>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A {Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A
Probab=18.65 E-value=1.5e+02 Score=33.20 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=51.0
Q ss_pred chHHHHHHhhcch--hhhhhccccccccccccccceeecccccCCc----chhhhhhhhhhhccccccCCC-CCChhHHH
Q 010453 22 IDQFMIGAVKNDI--VKLFDSVEKYDDGTFYFDEKLVNMREQQGPL----ATTSSVVRGLTAFSSVITESL-NLTGDKIL 94 (510)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~d~~~v~~~~~eggL----s~Ta~~v~g~~~la~~~~~~p-~i~~dQi~ 94 (510)
-|.++|....+.+ ...|.-+.. ..-|+.|+-|+| .|+. +--..++.|+-.+...+.+.| .+++++.-
T Consensus 185 ~d~~~v~~a~~~~~~~~~~~~v~~--~dGf~~DGSf~q----H~~~~Y~G~YG~~~l~g~~~~~~~l~gT~f~~~~~~~~ 258 (752)
T 1x1i_A 185 KDAVKLAAARNGLSGTGIFPYATG--GDGFYADGSFVQ----HTTFAYTGGYGSSVLETTANLMYLLSGSTWSVSDPNQS 258 (752)
T ss_dssp TCHHHHHHHHHHTTSTTSSSCCSS--SSEECTTSCEEE----TTTEECTTTHHHHHHHHHHHHHHHHTTSTTCCCCGGGG
T ss_pred CCHHHHHHHHHHhccCceEEeecC--CCCEeccCceEe----cCCeecccchHHHHHHHHHHHHHHhCCCCCcCCHHHHH
Confidence 3555555555555 444443332 466999999999 5565 444677787777777777766 69999988
Q ss_pred HHhhhhh
Q 010453 95 GIAKFFL 101 (510)
Q Consensus 95 ~~anyll 101 (510)
.+.+|++
T Consensus 259 ~l~~~i~ 265 (752)
T 1x1i_A 259 NVWQWIY 265 (752)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888877
Done!