Query 010453
Match_columns 510
No_of_seqs 154 out of 208
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 07:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 39.7 7.7 0.00056 28.0 2.5 26 420-448 14-39 (64)
2 d1vlfn1 b.3.5.1 (N:196-274) Tr 33.7 22 0.0016 26.5 4.4 45 157-215 12-56 (79)
3 d1f86a_ b.3.4.1 (A:) Transthyr 31.7 23 0.0017 28.5 4.4 63 147-215 2-66 (115)
4 d1cora_ a.3.1.1 (A:) Cytochrom 31.5 9.6 0.0007 28.0 1.9 18 87-104 65-82 (82)
5 d351ca_ a.3.1.1 (A:) Cytochrom 28.2 13 0.00091 27.3 2.0 18 87-104 65-82 (82)
6 d1cwva1 b.1.14.1 (A:503-596) I 22.3 1.3E+02 0.0096 22.6 7.3 61 145-214 19-79 (94)
7 d1n7oa1 a.102.3.2 (A:170-540) 18.1 53 0.0039 31.3 4.8 95 23-123 197-317 (371)
8 d1uwya1 b.3.2.1 (A:297-403) Ca 16.9 2E+02 0.014 21.4 7.4 51 149-215 3-53 (107)
9 d1qfha2 b.1.18.10 (A:750-857) 15.9 2.2E+02 0.016 21.5 8.1 68 285-361 12-85 (108)
10 d1rwha1 a.102.3.2 (A:4-372) Ch 15.9 64 0.0047 30.6 4.8 73 23-101 197-274 (369)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=39.73 E-value=7.7 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCc
Q 010453 420 LTILPLFGFIIGLLRLGVNLKNFPTSAVP 448 (510)
Q Consensus 420 lvlapll~Lli~W~~lG~Nl~n~p~s~~~ 448 (510)
++.+|+-++-. ..|.|+.++|....+
T Consensus 14 ~iflP~t~i~g---ifGMN~~~~P~~~~~ 39 (64)
T d2iuba2 14 TIFMPLTFIAG---IYGMNFEYMPELRWK 39 (64)
T ss_dssp HHHHHHHHHTT---SCC------------
T ss_pred HHHHHHHHHHh---hhccCCCCCCCCCcc
Confidence 34455533332 348899999987644
No 2
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=33.66 E-value=22 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 157 GSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 157 g~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
|+|++.++|.+.+. + ..+. . +.+.++-.|+++ +..+|.|.+.++.
T Consensus 12 G~~v~gA~V~L~~~-----~-~~v~-~---t~Td~~G~F~f~----~l~~G~Y~l~is~ 56 (79)
T d1vlfn1 12 GDCFEGAKVVLKSG-----G-KEVA-S---AETNFFGEFKFD----ALDNGEYTVEIDA 56 (79)
T ss_dssp TEECTTCEEEEEET-----T-EEEE-E---EECCTTSEEEEE----EECSEEEEEEEEE
T ss_pred CccccccEEEEECC-----C-CeEE-e---eEECCCCcEEEE----ecCCCCEEEEEEE
Confidence 99999999998331 2 2211 1 122233478887 4568999997654
No 3
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.70 E-value=23 Score=28.51 Aligned_cols=63 Identities=27% Similarity=0.242 Sum_probs=38.4
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCc-eEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 147 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDN-SIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 147 ~l~v~Vtd-vlg~~l~~~~V~~~~~~~~~~~~~-~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+|..+|-| ..|.|+..+.|.+.+. ..++. ..+... ..|.|+.+-++ ....+..+|.|++.|.+
T Consensus 2 PiStHVLDt~~G~PA~gv~V~L~~~---~~~~~~~~i~~~--~Td~dGRi~~~-~~~~~~~~G~Y~l~F~~ 66 (115)
T d1f86a_ 2 PLMVKVLDAVRGSPAINVAVHVFRK---AADDTWEPFASG--KTSESGELHGL-TTEEEFVEGIYKVEIDT 66 (115)
T ss_dssp CEEEEEEETTTTEECTTCEEEEEEE---CTTSCEEEEEEE--ECCTTSEECCS-CCTTTCCSEEEEEEECH
T ss_pred CceEEEecCCCCCCCCCCEEEEEEE---CCCCCEEEEEEE--EeCCCCcccCc-cCcccCCCeEEEEEEEH
Confidence 46777777 7899999999998554 22211 222222 24445543222 12346788999999876
No 4
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=31.53 E-value=9.6 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=16.5
Q ss_pred CCChhHHHHHhhhhhccC
Q 010453 87 NLTGDKILGIAKFFLGIG 104 (510)
Q Consensus 87 ~i~~dQi~~~anyllsr~ 104 (510)
.|+.||+-.+++|++|.|
T Consensus 65 ~lsdeei~~la~Yi~SlK 82 (82)
T d1cora_ 65 PVTEEEAKILAEWILSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999876
No 5
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.16 E-value=13 Score=27.31 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.4
Q ss_pred CCChhHHHHHhhhhhccC
Q 010453 87 NLTGDKILGIAKFFLGIG 104 (510)
Q Consensus 87 ~i~~dQi~~~anyllsr~ 104 (510)
.|+++|+-.+++|++|.|
T Consensus 65 ~lsd~ei~~la~Yi~SlK 82 (82)
T d351ca_ 65 AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999875
No 6
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=22.33 E-value=1.3e+02 Score=22.56 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEE
Q 010453 145 KDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 214 (510)
Q Consensus 145 ~~~l~v~Vtdvlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 214 (510)
.-.+.+.|.|-.|.|++...|... .... .. ++......+.+ -.++..+.+ -..|.|.+...
T Consensus 19 ~~t~tatv~D~~gnpv~g~~V~f~----~~~~-~~-~~~~~~~Td~~-G~a~v~lts--t~aG~~~VtAt 79 (94)
T d1cwva1 19 AITVEFTVADFEGKPLAGQEVVIT----TNNG-AL-PNKITEKTDAN-GVARIALTN--TTDGVTVVTAE 79 (94)
T ss_dssp CEEEEEEEECTTSCBCCSCEEEEE----CCTT-CB-SCEEEEECCTT-SEEEEEEBC--SSCEEEEEEEE
T ss_pred cEEEEEEEEcCCCCCcCCCEEEEE----ECCC-cE-EecceeEECCC-EEEEEEEEe--CCceEEEEEEE
Confidence 568999999999999998988853 2222 22 22222122223 356666543 45687777543
No 7
>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=18.11 E-value=53 Score=31.27 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=62.1
Q ss_pred hHHHHHHhhcchhhhhhccccccccccccccceeecccccCCc----chhhhhhhhhhhccccccCCC-CCChhHHHHHh
Q 010453 23 DQFMIGAVKNDIVKLFDSVEKYDDGTFYFDEKLVNMREQQGPL----ATTSSVVRGLTAFSSVITESL-NLTGDKILGIA 97 (510)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~~~v~~~~~eggL----s~Ta~~v~g~~~la~~~~~~p-~i~~dQi~~~a 97 (510)
|.+++....+.|...|.-+..- | -|+.|+-|+| .|+. +-=..++.|+-.++..+...+ +++.||+.-|.
T Consensus 197 d~~~v~~a~~~i~~v~~~v~~g-d-G~~~DgSf~q----H~~~~Y~G~YG~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~ 270 (371)
T d1n7oa1 197 DDQEISSTIRSIEQVFKLVDQG-E-GFYQDGSYID----HTNVAYTGAYGNVLIDGLSQLLPVIQKTKNPIDKDKMQTMY 270 (371)
T ss_dssp CHHHHHHHHHHHGGGGSCCSSS-S-EECTTSCEEE----TTTEECTTTHHHHHHHHHHHHHHHHTTSSSCCCHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHheecccC-C-ceecCCceec----cCceeccCcchHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 5666666666666555554432 3 3999999999 4444 334557777777776666666 79999999888
Q ss_pred hhhh---------------------ccCCCCChhhHHHHHHHHHhhh
Q 010453 98 KFFL---------------------GIGIPGDTKNFFDQVDSLACLE 123 (510)
Q Consensus 98 nyll---------------------sr~~v~s~k~a~~l~~al~~l~ 123 (510)
+|++ ||.+-++....+.++.++-.|+
T Consensus 271 ~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~ 317 (371)
T d1n7oa1 271 HWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIA 317 (371)
T ss_dssp HHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccceecccccccCCCccccCCCccccchHHHHHHHHHHHh
Confidence 8875 4444444444566666665554
No 8
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95 E-value=2e+02 Score=21.43 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=30.3
Q ss_pred EEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 010453 149 KVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 215 (510)
Q Consensus 149 ~v~Vtdvlg~~l~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 215 (510)
+=+|+|--|+|++.++|.+... +. ... ..+.++..|.++ ...|.|.+.++.
T Consensus 3 ~G~V~D~~g~pi~~A~V~i~~~----~~------~~~-~~td~~G~f~~~-----~~~g~Y~l~vs~ 53 (107)
T d1uwya1 3 KGQVFDQNGNPLPNVIVEVQDR----KH------ICP-YRTNKYGEYYLL-----LLPGSYIINVTV 53 (107)
T ss_dssp EEEEECTTSCBCCSCEEEETTC----CC------SSC-CBCCTTCEEEEC-----CCSEEEEEEEEC
T ss_pred EEEEECCCCCCcCcEEEEEEcc----cc------cce-eecchhheeeee-----cCCccEEEEEEE
Confidence 3468899999999999986211 11 011 112233356553 346999987654
No 9
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=15.93 E-value=2.2e+02 Score=21.55 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEEEEEc--CCCCCCC--ceeEEEEEEeCCceEEEEEeccCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-
Q 010453 285 LSFQMST--PLGNAFK--PHQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN- 358 (510)
Q Consensus 285 l~F~l~~--~~g~~~~--PhQafL~L~~~tg~e~~fv~k~s~k-~yk~~ld~~~l~~~f~~~Sg~y~v~LIVGD~~~~~- 358 (510)
++|.|.. ..|+... ..+.-+.+....+ ++...+.+.++ .|+++.-. ...|.|.|++.+++..+..
T Consensus 12 ~tFtV~a~D~~G~~~~~G~~~~~v~i~gp~~-~~~~~v~d~~dGty~v~y~p--------~~~G~y~v~V~~~g~~I~gS 82 (108)
T d1qfha2 12 FTFTVAAKNKKGEVKTYGGDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGS 82 (108)
T ss_dssp EEEEEECBCTTSSBCSSCCCCEEEEEEECCS-EEEEEEEECSSSEEEEEEEE--------ESSEEEEEEEEETTEECBTC
T ss_pred EEEEEEeecCCCCeeccCCCeEEEEEECCCc-ccccEEEECCCCEEEEEEEE--------CcceeEEEEEEECCEECCCC
Confidence 5677764 3333221 2234455555333 23333433322 47665421 3579999999999988864
Q ss_pred Ccc
Q 010453 359 SLL 361 (510)
Q Consensus 359 p~~ 361 (510)
||.
T Consensus 83 PF~ 85 (108)
T d1qfha2 83 PFK 85 (108)
T ss_dssp SEE
T ss_pred CEE
Confidence 653
No 10
>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]}
Probab=15.89 E-value=64 Score=30.57 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=50.5
Q ss_pred hHHHHHHhhcchhhhhhccccccccccccccceeecccccCCcc----hhhhhhhhhhhccccccCCC-CCChhHHHHHh
Q 010453 23 DQFMIGAVKNDIVKLFDSVEKYDDGTFYFDEKLVNMREQQGPLA----TTSSVVRGLTAFSSVITESL-NLTGDKILGIA 97 (510)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~~~v~~~~~eggLs----~Ta~~v~g~~~la~~~~~~p-~i~~dQi~~~a 97 (510)
|.+++....+.|...|.-+..- | -|+.|+-|+| .|+.. ==..++.|+-.++..+.+.+ +++++++.-|.
T Consensus 197 d~~~v~~a~~~i~~v~~~vt~g-d-Gf~~DgSf~q----H~~~~Y~G~YG~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~ 270 (369)
T d1rwha1 197 DPTKLNHAVAGLSQVWQYVTSG-D-GIFRDGSFIQ----HSTTPYTGSYGVVLLTGLSKLFSLLGGTAFEVSDPTRSIFF 270 (369)
T ss_dssp CHHHHHHHHHHGGGGGSCBSSS-S-EEBTTSCEEE----TTTEECTTTHHHHHHHHHHHHHHHHTTSTTCCCCGGGHHHH
T ss_pred CHHHHHHHHHHhhhhcccccCC-C-ccccCCceee----ecceeccccchHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 5666666666666555444432 2 3999999999 44442 23457777777777777666 79999999999
Q ss_pred hhhh
Q 010453 98 KFFL 101 (510)
Q Consensus 98 nyll 101 (510)
+|++
T Consensus 271 ~~i~ 274 (369)
T d1rwha1 271 DAVE 274 (369)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
Done!