Query 010454
Match_columns 510
No_of_seqs 351 out of 1911
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.7 1.1E-17 2.5E-22 132.3 6.7 59 171-230 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.7 1.9E-17 4.2E-22 132.6 7.0 63 264-326 1-63 (64)
3 smart00380 AP2 DNA-binding dom 99.7 3.1E-17 6.7E-22 131.4 7.8 61 172-233 1-63 (64)
4 cd00018 AP2 DNA-binding domain 99.7 3.3E-17 7.1E-22 129.7 7.0 61 263-323 1-61 (61)
5 PHA00280 putative NHN endonucl 99.7 1E-16 2.3E-21 144.0 6.5 75 147-224 45-119 (121)
6 PHA00280 putative NHN endonucl 99.5 1.9E-13 4.2E-18 123.1 8.9 104 207-317 11-119 (121)
7 PF00847 AP2: AP2 domain; Int 99.1 1.5E-10 3.2E-15 89.7 5.4 51 171-221 1-56 (56)
8 PF00847 AP2: AP2 domain; Int 98.9 5.6E-09 1.2E-13 80.8 6.5 51 263-313 1-55 (56)
9 cd04518 TBP_archaea archaeal T 83.0 27 0.0006 33.7 12.7 136 169-312 32-172 (174)
10 cd00652 TBP_TLF TATA box bindi 82.0 30 0.00065 33.3 12.5 135 170-311 33-172 (174)
11 PRK00394 transcription factor; 73.8 61 0.0013 31.5 12.0 136 169-312 31-173 (179)
12 cd04517 TLF TBP-like factors ( 71.0 74 0.0016 30.7 11.9 132 172-310 35-171 (174)
13 cd04516 TBP_eukaryotes eukaryo 61.8 1.4E+02 0.0031 28.8 11.9 133 170-308 33-168 (174)
14 PLN00062 TATA-box-binding prot 60.3 1.7E+02 0.0037 28.5 12.2 135 170-311 33-171 (179)
15 PF14657 Integrase_AP2: AP2-li 51.0 47 0.001 24.8 5.3 36 184-219 1-42 (46)
16 PF14657 Integrase_AP2: AP2-li 45.1 57 0.0012 24.4 4.9 38 275-312 1-42 (46)
17 PF08471 Ribonuc_red_2_N: Clas 29.1 54 0.0012 29.0 2.9 21 198-218 70-90 (93)
18 PF08846 DUF1816: Domain of un 28.7 79 0.0017 26.4 3.6 30 275-304 9-38 (68)
19 PF00352 TBP: Transcription fa 26.0 1.5E+02 0.0033 24.9 5.0 47 171-218 36-82 (86)
20 PHA02601 int integrase; Provis 25.7 82 0.0018 31.9 4.0 39 179-218 5-46 (333)
21 PF05036 SPOR: Sporulation rel 23.6 47 0.001 25.9 1.4 27 288-315 45-71 (76)
22 PF13356 DUF4102: Domain of un 21.3 3.1E+02 0.0068 22.9 6.1 33 182-214 34-70 (89)
23 PF08471 Ribonuc_red_2_N: Clas 20.4 1E+02 0.0022 27.3 2.9 21 291-311 70-90 (93)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.71 E-value=1.1e-17 Score=132.32 Aligned_cols=59 Identities=53% Similarity=0.852 Sum_probs=55.3
Q ss_pred CCeEEeeEecCCCcEEEEEeeC--CEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccc
Q 010454 171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA 230 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~--gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~ 230 (510)
|+|+||++++ +|||+|+|+++ +|++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999755 59999999999 99999999999999999999999999999999999863
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.71 E-value=1.9e-17 Score=132.56 Aligned_cols=63 Identities=48% Similarity=0.748 Sum_probs=59.5
Q ss_pred cccceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCCCcc
Q 010454 264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYE 326 (510)
Q Consensus 264 ~yrGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s~Y~ 326 (510)
+|+||+++++|||+|+|+...+++.++||+|+|+||||+|||.|+++|+|..+.+||+.++|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 589999888899999998656999999999999999999999999999999999999999996
No 3
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.70 E-value=3.1e-17 Score=131.38 Aligned_cols=61 Identities=57% Similarity=0.920 Sum_probs=58.0
Q ss_pred CeEEeeEecCCCcEEEEEee--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccccch
Q 010454 172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233 (510)
Q Consensus 172 gyrGV~~~r~~gKW~A~I~~--~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~~ye 233 (510)
+|+||++ +++|||+|+|++ .+|+++||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus 1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 5899996 667999999999 899999999999999999999999999999999999999986
No 4
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.70 E-value=3.3e-17 Score=129.72 Aligned_cols=61 Identities=51% Similarity=0.788 Sum_probs=56.1
Q ss_pred ccccceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 010454 263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS 323 (510)
Q Consensus 263 S~yrGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s 323 (510)
|+|+||+++++|||+|+|+....+|+++||+|+|+||||+|||+|+++|+|..+.+|||.+
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999988999999997433499999999999999999999999999999999999864
No 5
>PHA00280 putative NHN endonuclease
Probab=99.66 E-value=1e-16 Score=144.05 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred CcccccccCCcccccCCCCCCCCCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc
Q 010454 147 GEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD 224 (510)
Q Consensus 147 ~~LR~at~~~n~~nr~r~~~r~~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~ 224 (510)
.|||++|+++|+.|++ .+++++|||+||+|+++.+||+|+|+++||+++||+|+++|+|+.||+ ++.+|+|++|+
T Consensus 45 ~NLr~~T~~eN~~N~~--~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 45 DNLRLALPKENSWNMK--TPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred HHhhhcCHHHHhcccC--CCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 6899999999988876 577889999999999999999999999999999999999999999997 77889998874
No 6
>PHA00280 putative NHN endonuclease
Probab=99.46 E-value=1.9e-13 Score=123.05 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCCCc---ccc-ccccchhhhhhhhccchhhhhhhhhcccCCccCCcccccceeeee-CCeEEEEEc
Q 010454 207 AARAYDRAAIKFRGVDAD---INF-NLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMG 281 (510)
Q Consensus 207 AArAYD~Aa~~l~G~~A~---~NF-p~~~yeeELkqLr~lSKEE~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~ 281 (510)
+-+++..+...++|.--. +.+ .....+..+.+|+.++..|+..+.+.. +.++|+|+||+|++ .|||+|+|.
T Consensus 11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~ 86 (121)
T PHA00280 11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVT 86 (121)
T ss_pred hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEE
Confidence 445677777788885321 111 112344678999999999998887654 37789999999996 899999996
Q ss_pred cccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcc
Q 010454 282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAV 317 (510)
Q Consensus 282 ~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~ 317 (510)
++||.++||+|+++|+|+.||+ ++++|||.+|.
T Consensus 87 --~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 87 --AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred --ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 9999999999999999999997 78899998774
No 7
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.09 E-value=1.5e-10 Score=89.68 Aligned_cols=51 Identities=33% Similarity=0.549 Sum_probs=47.0
Q ss_pred CCeEEeeEecCCCcEEEEEeeC-----CEEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 010454 171 SQYRGVTFYRRTGRWESHIWDC-----GKQVYLGGFDTAHAAARAYDRAAIKFRGV 221 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~-----gK~i~LGtFdT~EeAArAYD~Aa~~l~G~ 221 (510)
|+|+||+|++..++|+|+|++. +|.++||.|+++|||++||++++++++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999983 48999999999999999999999999874
No 8
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=98.86 E-value=5.6e-09 Score=80.85 Aligned_cols=51 Identities=37% Similarity=0.561 Sum_probs=45.4
Q ss_pred ccccceeeee-CCeEEEEEcccc-C--ceeeecCCCCCHHHHHHHHHHHHHHhcC
Q 010454 263 SKYRGVTLHK-CGRWEARMGQFL-G--KKYIYLGLFDSEVEAARAYDKAAIKCNG 313 (510)
Q Consensus 263 S~yrGV~~~k-~gKW~ArI~~~~-~--gk~i~LGtFdTeEEAArAYD~Aaikl~G 313 (510)
|+|+||++++ .++|+|+|+... + +|.++||.|++++||++||+.++++++|
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~ 55 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG 55 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence 6899999997 899999997532 1 4999999999999999999999999987
No 9
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=83.02 E-value=27 Score=33.69 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=83.5
Q ss_pred CCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc----cccccccchhhhhhhhccch
Q 010454 169 RSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD----INFNLADYEDDMKQMKNLTK 244 (510)
Q Consensus 169 ~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~----~NFp~~~yeeELkqLr~lSK 244 (510)
...+|-||.++-+.-|=.+.|+..||-+--|. .++|+|..|-++.+..+...... .+|.+...-.....--.+..
T Consensus 32 ~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L 110 (174)
T cd04518 32 NPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNL 110 (174)
T ss_pred CCCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCH
Confidence 34689999987777788999999999876664 68889999988888776542211 12221110000000011222
Q ss_pred hhhhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454 245 EEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312 (510)
Q Consensus 245 EE~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~ 312 (510)
+.+...++.- .=...+|-|+.++- .-|=.+.| +..||-+..|. .++||+.+|.++-...|.
T Consensus 111 ~~la~~~~~~----~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 172 (174)
T cd04518 111 DAIAIGLPNA----EYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK 172 (174)
T ss_pred HHHHhhCCCC----ccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 3333333311 12346789988774 44555666 67888777775 678999999888776653
No 10
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=82.01 E-value=30 Score=33.30 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=81.3
Q ss_pred CCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCC--CC--ccccccccchhhhhhhhccchh
Q 010454 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV--DA--DINFNLADYEDDMKQMKNLTKE 245 (510)
Q Consensus 170 tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~--~A--~~NFp~~~yeeELkqLr~lSKE 245 (510)
..+|-||.++.+.-+=.+.|+..||-+--|. .++|+|.+|.++.+..+.-. .. ..||-+...-.....--.+..+
T Consensus 33 Pe~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~ 111 (174)
T cd00652 33 PKRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLE 111 (174)
T ss_pred CCccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHH
Confidence 3688999987777888999999999887775 47788888888887776332 11 1233221111000000112223
Q ss_pred hhhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 246 E~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
++....+... .=.-..|-|+.++- .-+=.+.| +..||-+..|. .+++|+.+|+++-...|
T Consensus 112 ~la~~~~~~~---~YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L 172 (174)
T cd00652 112 ELALKHPENA---SYEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL 172 (174)
T ss_pred HHHhhhhccc---EECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3333332111 11235689988874 34555556 67888777776 67889999987765544
No 11
>PRK00394 transcription factor; Reviewed
Probab=73.76 E-value=61 Score=31.46 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCC--CC--ccccccccchhhhhhhhccch
Q 010454 169 RSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV--DA--DINFNLADYEDDMKQMKNLTK 244 (510)
Q Consensus 169 ~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~--~A--~~NFp~~~yeeELkqLr~lSK 244 (510)
...+|-||.++-+.-|=.+.|+..||-+--|.. ++|+|..|-++.+..+... .. ..+|.+...-.....--.+..
T Consensus 31 ePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa~-S~~~a~~a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L 109 (179)
T PRK00394 31 NPEQFPGLVYRLEDPKIAALIFRSGKVVCTGAK-SVEDLHEAVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNL 109 (179)
T ss_pred CcccCceEEEEecCCceEEEEEcCCcEEEEccC-CHHHHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcH
Confidence 335788999877788899999999998878875 6778888888877666432 11 122222110000000011222
Q ss_pred hhhhhhh--hcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454 245 EEFVHIL--RRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312 (510)
Q Consensus 245 EE~V~~L--RRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~ 312 (510)
+++...+ +.-. =....|-|+.++- .-|=...| +..||-+..|. .++||+.+|.++-...|.
T Consensus 110 ~~la~~~~~~~~~----YePe~fPglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 173 (179)
T PRK00394 110 NAIAIGLGLENIE----YEPEQFPGLVYRLDDPKVVVLL--FGSGKLVITGA-KSEEDAEKAVEKILEKLE 173 (179)
T ss_pred HHHHHhcCcCCcE----ECcccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 3333222 1111 1235789988774 44656666 67888777775 678999999988776663
No 12
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=71.03 E-value=74 Score=30.68 Aligned_cols=132 Identities=21% Similarity=0.194 Sum_probs=77.7
Q ss_pred CeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCC--ccccccccchhhhhhhhccchhhh
Q 010454 172 QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA--DINFNLADYEDDMKQMKNLTKEEF 247 (510)
Q Consensus 172 gyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~--G~~A--~~NFp~~~yeeELkqLr~lSKEE~ 247 (510)
+|-||.++-+.-|=.+.|+..||-+--| ..++|+|.+|.+..+..+. |... ..||-+...-.....--.+..+++
T Consensus 35 ~fpgli~R~~~Pk~t~lIF~sGKiviTG-aks~~~~~~a~~~~~~~l~~~g~~~~~~~~f~v~nIvat~~~~~~i~L~~l 113 (174)
T cd04517 35 RYPKVTMRLREPRATASVWSSGKITITG-ATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDEL 113 (174)
T ss_pred CCCEEEEEecCCcEEEEEECCCeEEEEc-cCCHHHHHHHHHHHHHHHHHcCCCcccCCceEEEEEEEEEeCCCcccHHHH
Confidence 8899998777778899999999977555 5789999999998887763 3221 123322111000000011112222
Q ss_pred hhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHH
Q 010454 248 VHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIK 310 (510)
Q Consensus 248 V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaik 310 (510)
...-.+.. .=.-..|-|+.++- .-+=.+.| +..||-+..|. .+++|+.+|+++-.-.
T Consensus 114 a~~~~~~~---~YePE~fPgliyr~~~p~~t~lI--F~sGkivitGa-ks~~~~~~a~~~i~pi 171 (174)
T cd04517 114 AAKNRSSA---SYEPELHPGVVYRITGPRATLSI--FSTGSVTVTGA-RSMEDVREAVEKIYPI 171 (174)
T ss_pred HHhchhhc---EeCCccCCEEEEEECCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 21111111 01235688988774 33444555 67888777775 5788888888765543
No 13
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=61.82 E-value=1.4e+02 Score=28.79 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc---cccccccchhhhhhhhccchhh
Q 010454 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD---INFNLADYEDDMKQMKNLTKEE 246 (510)
Q Consensus 170 tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~---~NFp~~~yeeELkqLr~lSKEE 246 (510)
..+|-||.++-+.-|=.+.|+..||-+--|. .++|+|..|.++.+..+....-. .||-....-.....--.+..++
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa-ks~e~a~~a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~l~~~i~L~~ 111 (174)
T cd04516 33 PKRFAAVIMRIREPKTTALIFSSGKMVCTGA-KSEDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEG 111 (174)
T ss_pred CccCcEEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEEEEEECCCcccHHH
Confidence 3578899987777788999999999887776 47788888988888777432211 2332111111000001112222
Q ss_pred hhhhhhcccCCccCCcccccceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHH
Q 010454 247 FVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAA 308 (510)
Q Consensus 247 ~V~~LRRqS~g~sr~sS~yrGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aa 308 (510)
+....+... .=.-..|-|+.++-.+ +.+.+-.+..||-+.+|. .+++|+.+|++.-.
T Consensus 112 la~~~~~~~---~YePE~fPgliyr~~~-pk~~~liF~sGkvvitGa-ks~~~~~~a~~~i~ 168 (174)
T cd04516 112 LAHAHKQFS---SYEPELFPGLIYRMVK-PKIVLLIFVSGKIVLTGA-KSREEIYQAFENIY 168 (174)
T ss_pred HHHhChhcc---EeCCccCceEEEEecC-CcEEEEEeCCCEEEEEec-CCHHHHHHHHHHHH
Confidence 222111111 1123568998876432 334443377888777775 57888888876543
No 14
>PLN00062 TATA-box-binding protein; Provisional
Probab=60.34 E-value=1.7e+02 Score=28.46 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc---cccccccchhhhhhhhccchhh
Q 010454 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD---INFNLADYEDDMKQMKNLTKEE 246 (510)
Q Consensus 170 tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~---~NFp~~~yeeELkqLr~lSKEE 246 (510)
..+|-||.++-+.-|=.+.|+..||-+--| ..++|+|..|.++.+..+....-. .||-+...-.....--.+..+.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~SGKiviTG-aks~e~a~~a~~~~~~~L~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~ 111 (179)
T PLN00062 33 PKRFAAVIMRIREPKTTALIFASGKMVCTG-AKSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 111 (179)
T ss_pred CccCcEEEEEeCCCcEEEEEECCCeEEEEe-cCCHHHHHHHHHHHHHHHHHcCCCcCCCccEEEEEEEEEECCCcccHHH
Confidence 357889998777788899999999987655 468889999998888777432212 2332211110000001111222
Q ss_pred hhhhhhcccCCccCCcccccceeeeeC-CeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 247 FVHILRRQSTGFSRGSSKYRGVTLHKC-GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 247 ~V~~LRRqS~g~sr~sS~yrGV~~~k~-gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
+...-++.. .=.-..|-|+.++-. -|=...| +..||-+..|. .++||+.+|.+.-.-.|
T Consensus 112 la~~~~~~~---~YePE~fPgliyr~~~pk~~~li--F~sGkvvitGa-ks~~~~~~ai~~i~p~L 171 (179)
T PLN00062 112 LAYAHGAFS---SYEPELFPGLIYRMKQPKIVLLI--FVSGKIVITGA-KVREEIYTAFENIYPVL 171 (179)
T ss_pred HHHhchhhc---ccCcccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 221111111 122357889887643 3444445 77888887776 56788888876654443
No 15
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=50.95 E-value=47 Score=24.81 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=27.6
Q ss_pred cEEEEEe-e---CC--EEEEecCCCCHHHHHHHHHHHHHHhc
Q 010454 184 RWESHIW-D---CG--KQVYLGGFDTAHAAARAYDRAAIKFR 219 (510)
Q Consensus 184 KW~A~I~-~---~g--K~i~LGtFdT~EeAArAYD~Aa~~l~ 219 (510)
+|...|. . .| ++++-+.|.|..||-.+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5777773 2 24 57889999999999999988776653
No 16
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=45.08 E-value=57 Score=24.37 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=27.9
Q ss_pred eEEEEE-c-cccC--ceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454 275 RWEARM-G-QFLG--KKYIYLGLFDSEVEAARAYDKAAIKCN 312 (510)
Q Consensus 275 KW~ArI-~-~~~~--gk~i~LGtFdTeEEAArAYD~Aaikl~ 312 (510)
+|..+| + .... .++++-+.|.|..||-.+..+...++.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 477777 2 1113 367888999999999999988877664
No 17
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=29.13 E-value=54 Score=29.00 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.6
Q ss_pred ecCCCCHHHHHHHHHHHHHHh
Q 010454 198 LGGFDTAHAAARAYDRAAIKF 218 (510)
Q Consensus 198 LGtFdT~EeAArAYD~Aa~~l 218 (510)
-|+|+|+|+|..=||+....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999987765
No 18
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=28.70 E-value=79 Score=26.41 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.3
Q ss_pred eEEEEEccccCceeeecCCCCCHHHHHHHH
Q 010454 275 RWEARMGQFLGKKYIYLGLFDSEVEAARAY 304 (510)
Q Consensus 275 KW~ArI~~~~~gk~i~LGtFdTeEEAArAY 304 (510)
.|-++|.-..-...+|.|-|.+.+||..+.
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~ 38 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAAL 38 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHh
Confidence 588999633446889999999999999873
No 19
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=26.02 E-value=1.5e+02 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=38.2
Q ss_pred CCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHh
Q 010454 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKF 218 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l 218 (510)
.+|-||.++-+.-+-.+.|+..||-+..|. .++|+|..|.+.....|
T Consensus 36 e~fpgl~~r~~~p~~t~~IF~sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 36 ERFPGLIYRLRNPKATVLIFSSGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTESSEEEEETTTTEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeecCCcEEEEEEcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 467788877777788999999999887775 68889999998877665
No 20
>PHA02601 int integrase; Provisional
Probab=25.70 E-value=82 Score=31.91 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=27.6
Q ss_pred ecCCCcEEEEEeeC---CEEEEecCCCCHHHHHHHHHHHHHHh
Q 010454 179 YRRTGRWESHIWDC---GKQVYLGGFDTAHAAARAYDRAAIKF 218 (510)
Q Consensus 179 ~r~~gKW~A~I~~~---gK~i~LGtFdT~EeAArAYD~Aa~~l 218 (510)
.+++|+|+++++.. |+++.. +|.|..||-...+.....+
T Consensus 5 ~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 5 KLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAEV 46 (333)
T ss_pred EcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence 46678999999864 676653 6999988876665554444
No 21
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=23.60 E-value=47 Score=25.90 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=19.2
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhcCCC
Q 010454 288 YIYLGLFDSEVEAARAYDKAAIKCNGRE 315 (510)
Q Consensus 288 ~i~LGtFdTeEEAArAYD~Aaikl~G~~ 315 (510)
++.+|.|++.+||..+..+.. +..|.+
T Consensus 45 rV~~G~f~~~~~A~~~~~~l~-~~~~~~ 71 (76)
T PF05036_consen 45 RVRVGPFSSREEAEAALRKLK-KAAGPD 71 (76)
T ss_dssp EEEECCECTCCHHHHHHHHHH-HHHTS-
T ss_pred EEEECCCCCHHHHHHHHHHHh-HhhCCC
Confidence 566799999999998877655 344433
No 22
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=21.34 E-value=3.1e+02 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCcEEEEEeeCCE--EEEecCCCC--HHHHHHHHHHH
Q 010454 182 TGRWESHIWDCGK--QVYLGGFDT--AHAAARAYDRA 214 (510)
Q Consensus 182 ~gKW~A~I~~~gK--~i~LGtFdT--~EeAArAYD~A 214 (510)
...|..+.+.+|| ++.||.|+. ..+|-....+.
T Consensus 34 ~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~ 70 (89)
T PF13356_consen 34 SKTFYFRYRINGKRRRITLGRYPELSLAEAREKAREL 70 (89)
T ss_dssp -EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHH
T ss_pred CeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHH
Confidence 3569988888887 688999965 33444333333
No 23
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=20.36 E-value=1e+02 Score=27.32 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 010454 291 LGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 291 LGtFdTeEEAArAYD~Aaikl 311 (510)
-|+|+|+|+|..-||.-+-.|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 599999999999999877654
Done!