Query 010454
Match_columns 510
No_of_seqs 351 out of 1911
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 9E-20 3.1E-24 145.4 6.1 60 264-323 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 7.3E-20 2.5E-24 145.9 5.2 58 172-230 2-62 (63)
3 1u3e_M HNH homing endonuclease 95.6 0.00013 4.5E-09 67.6 -8.0 60 147-211 86-145 (174)
4 3igm_B PF14_0633 protein; AP2 93.9 0.027 9.3E-07 46.2 2.4 29 168-196 3-31 (77)
5 1u3e_M HNH homing endonuclease 90.9 0.018 6E-07 53.2 -2.6 88 210-305 55-146 (174)
6 2z8u_A Tata-box-binding protei 76.4 23 0.0008 33.2 11.4 134 170-311 44-182 (188)
7 3igm_B PF14_0633 protein; AP2 70.9 3 0.0001 34.3 3.2 28 260-289 3-31 (77)
8 3eik_A Tata-box-binding protei 69.1 26 0.00088 33.9 9.9 134 171-311 75-212 (218)
9 1ais_A TBP, protein (tata-bind 64.4 29 0.001 32.4 9.1 134 171-312 41-179 (182)
10 1mp9_A Tata-binding protein; t 63.3 38 0.0013 32.0 9.8 134 171-312 45-183 (198)
11 1z1b_A Integrase; protein-DNA 44.6 16 0.00055 35.2 3.9 41 175-218 15-55 (356)
12 1z1b_A Integrase; protein-DNA 39.3 33 0.0011 32.9 5.2 42 266-311 14-55 (356)
13 3jtz_A Integrase; four strande 24.2 1.2E+02 0.004 24.8 5.3 36 183-218 36-75 (88)
14 1ytb_A Protein (tata binding p 21.9 2.9E+02 0.0099 25.5 8.1 134 171-311 37-174 (180)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.79 E-value=9e-20 Score=145.35 Aligned_cols=60 Identities=33% Similarity=0.582 Sum_probs=55.9
Q ss_pred cccceeeeeCCeEEEEEcccc-CceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 010454 264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS 323 (510)
Q Consensus 264 ~yrGV~~~k~gKW~ArI~~~~-~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s 323 (510)
+|+||+++++|||+|+|+.+. +|+++|||+|+|+||||+|||.|+++|+|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999998655 479999999999999999999999999999999999875
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.78 E-value=7.3e-20 Score=145.88 Aligned_cols=58 Identities=50% Similarity=0.788 Sum_probs=54.1
Q ss_pred CeEEeeEecCCCcEEEEEee---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccc
Q 010454 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA 230 (510)
Q Consensus 172 gyrGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~ 230 (510)
+||||++ +++|||+|+|++ +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999996 579999999999 478999999999999999999999999999999999864
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=95.61 E-value=0.00013 Score=67.57 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=47.3
Q ss_pred CcccccccCCcccccCCCCCCCCCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHH
Q 010454 147 GEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY 211 (510)
Q Consensus 147 ~~LR~at~~~n~~nr~r~~~r~~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAY 211 (510)
.|||++|+++|+.++.+.... ...+||.+ +..++|.+.|..+ +.++||.|+|.+|||++|
T Consensus 86 ~NL~~~t~~eN~~~~~~~~~~---~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 86 TNLRWVTQKINVENQMSRGTL---NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL 145 (174)
T ss_dssp GGEEEECHHHHHHHHHHHTCC---CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred HHcEECCHHHHhhcccccCcc---cceeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence 689999999998776543322 12468876 6677899999988 778899999999999986
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.86 E-value=0.027 Score=46.21 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.6
Q ss_pred CCCCCeEEeeEecCCCcEEEEEeeCCEEE
Q 010454 168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV 196 (510)
Q Consensus 168 ~~tSgyrGV~~~r~~gKW~A~I~~~gK~i 196 (510)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 35799999999999999999999998864
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=90.94 E-value=0.018 Score=53.18 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCCc---cccc-cccchhhhhhhhccchhhhhhhhhcccCCccCCcccccceeeeeCCeEEEEEccccC
Q 010454 210 AYDRAAIKFRGVDAD---INFN-LADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLG 285 (510)
Q Consensus 210 AYD~Aa~~l~G~~A~---~NFp-~~~yeeELkqLr~lSKEE~V~~LRRqS~g~sr~sS~yrGV~~~k~gKW~ArI~~~~~ 285 (510)
++...+..+.|..-. .++- ....+..+.+|+-+|..|+.....+... . ..++||.+.+.++|.+.|. ..
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi~--~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPIIV--IS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEEE--EC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEEE--Ec
Confidence 666667777775321 1221 1123457889999999998876554431 1 1246776633567889985 44
Q ss_pred ceeeecCCCCCHHHHHHHHH
Q 010454 286 KKYIYLGLFDSEVEAARAYD 305 (510)
Q Consensus 286 gk~i~LGtFdTeEEAArAYD 305 (510)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 6778999999999999963
No 6
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=76.44 E-value=23 Score=33.25 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=77.9
Q ss_pred CCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCC--C-Cc-cccccccchhhhhhhhccchh
Q 010454 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV--D-AD-INFNLADYEDDMKQMKNLTKE 245 (510)
Q Consensus 170 tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~--~-A~-~NFp~~~yeeELkqLr~lSKE 245 (510)
..+|-||.++-+.-|=.+.|+..||-+--|.. ++|+|..|.++.+..+... . .. .+|-+...-.....--.+..+
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~ 122 (188)
T 2z8u_A 44 PEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLD 122 (188)
T ss_dssp -----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHH
T ss_pred CCCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHH
Confidence 35788998877888889999999998877764 5677888877776555331 1 11 222211100000000112223
Q ss_pred hhhhhhhcccCCccCCcccccceeee-eCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 246 E~V~~LRRqS~g~sr~sS~yrGV~~~-k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
++...++.-. =.-..|-||.++ ..-|-.+.| +..||-+..|. .+++|+..|.++....|
T Consensus 123 ~la~~~~~~e----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 123 DIALMVEGTE----YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHHSTTEE----ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHHhhCcCcE----ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3332222211 123578998877 455777777 68888887776 57889999988866555
No 7
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=70.88 E-value=3 Score=34.26 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCcccccceeeee-CCeEEEEEccccCceee
Q 010454 260 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYI 289 (510)
Q Consensus 260 r~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i 289 (510)
..+|+|.||+|.+ .+.|.|.-. .+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeEe
Confidence 4579999999997 689999984 455543
No 8
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=69.10 E-value=26 Score=33.87 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=83.1
Q ss_pred CCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCcccc---ccccchhhhhhhhccchhhh
Q 010454 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF---NLADYEDDMKQMKNLTKEEF 247 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NF---p~~~yeeELkqLr~lSKEE~ 247 (510)
.+|-||.++-+.-|=.+.|+..||-+-.|. .++|+|..|.++.+..+....-...| -+...-.....--.+..+++
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 467778777778889999999999988876 57889999999888877532212222 11100000000011222233
Q ss_pred hhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 248 VHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 248 V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
....+... .=.-..|-|+.++- .-|=...| +..||-+..|. .+++|+..|++.-.-.|
T Consensus 154 a~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 32222111 11234688988774 45666777 68898888887 78999999998866544
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=64.45 E-value=29 Score=32.35 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcC--CC-C-ccccccccchhhhhhhhccchhh
Q 010454 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG--VD-A-DINFNLADYEDDMKQMKNLTKEE 246 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G--~~-A-~~NFp~~~yeeELkqLr~lSKEE 246 (510)
.+|-||.++-+.-|=.+.|+..||-+--| ..++|+|..|.++.+..+.. .. . ..+|-+...-.....--.+..++
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~SGKiv~TG-akS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 119 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFSSGKLVVTG-AKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDV 119 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEE-ESSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHH
T ss_pred CccccEEEEcCCCcEEEEEeCCCeEEEec-CCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHH
Confidence 46778877666778889999999987665 46788888888887766643 21 1 12222111000000001122233
Q ss_pred hhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454 247 FVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312 (510)
Q Consensus 247 ~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~ 312 (510)
+...++.-. =....|-|+.++- .-|=.+.| +..||-+..|. .+++|+..|.++-...|.
T Consensus 120 la~~~~~~~----YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L~ 179 (182)
T 1ais_A 120 VALTLPNCE----YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLRELD 179 (182)
T ss_dssp HHHHSTTEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCCE----ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 332222211 1235788988774 45667777 67888777775 578899999988776653
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=63.34 E-value=38 Score=32.03 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcC--CC-Cc-cccccccchhhhhhhhccchhh
Q 010454 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG--VD-AD-INFNLADYEDDMKQMKNLTKEE 246 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G--~~-A~-~NFp~~~yeeELkqLr~lSKEE 246 (510)
.+|-||.++-+.-|=.+.|+..||-+--|.. ++|+|..|.++.+..+.. -. .. .+|-+...-.....--.+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 4577888777778889999999998888865 567888888887766533 11 11 2221111000000001122233
Q ss_pred hhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454 247 FVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312 (510)
Q Consensus 247 ~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~ 312 (510)
+...++.-. =.-..|-|+.++- .-|=.+.| +..||-+..|. .+++|+..|.++-...|.
T Consensus 124 la~~~~~~~----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 124 AAFLLENNM----YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp HHHHSSSEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcE----ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 332222111 1235789988774 55667777 68888877775 568899999988776663
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=44.58 E-value=16 Score=35.16 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.2
Q ss_pred EeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHh
Q 010454 175 GVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKF 218 (510)
Q Consensus 175 GV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l 218 (510)
||+ .++.|.|+.+....||++.+|. |..||-.+..++...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988878899999996 8888877766655544
No 12
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=39.33 E-value=33 Score=32.90 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=31.9
Q ss_pred cceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 266 RGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 266 rGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
.||..++.|.|+.+.. .+||++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4687767889998874 6788899996 8888877766655544
No 13
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.25 E-value=1.2e+02 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred CcEEEEEeeCCE--EEEecCCC--CHHHHHHHHHHHHHHh
Q 010454 183 GRWESHIWDCGK--QVYLGGFD--TAHAAARAYDRAAIKF 218 (510)
Q Consensus 183 gKW~A~I~~~gK--~i~LGtFd--T~EeAArAYD~Aa~~l 218 (510)
..|+-+.+.+|| ++-||.|+ |.++|-...+++...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 458888888877 57899996 6777777777766555
No 14
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.92 E-value=2.9e+02 Score=25.55 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCC-ccccccccchhhhhhhhccchhhh
Q 010454 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA-DINFNLADYEDDMKQMKNLTKEEF 247 (510)
Q Consensus 171 SgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~--G~~A-~~NFp~~~yeeELkqLr~lSKEE~ 247 (510)
.+|-||.++-+.-|=.+.|+..||-+--|. .++|+|..|.++.+..+. |... ..||-+...-...+.--.+..+.+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~l 115 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 115 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHH
Confidence 467788877777888999999999887775 467788888877766553 3211 123321110000000011222222
Q ss_pred hhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454 248 VHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (510)
Q Consensus 248 V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl 311 (510)
........ .=.-..|-|+.++- .-|=...| +..||-+..|. .+++|+.+|++.-.-.|
T Consensus 116 a~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~L 174 (180)
T 1ytb_A 116 AFSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPVL 174 (180)
T ss_dssp HHHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22221111 11235688988763 33444555 67888777775 56788888887755443
Done!