Query 010455
Match_columns 510
No_of_seqs 171 out of 1579
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 2.3E-61 7.7E-66 505.7 41.2 403 38-509 14-433 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 5.7E-62 2E-66 508.7 35.7 416 21-509 4-428 (536)
3 3rix_A Luciferase, luciferin 4 100.0 1.5E-61 5.2E-66 507.1 37.5 410 36-509 13-433 (550)
4 1v25_A Long-chain-fatty-acid-C 100.0 7.8E-61 2.7E-65 500.5 42.3 397 42-509 17-429 (541)
5 3o83_A Peptide arylation enzym 100.0 5.2E-61 1.8E-65 502.2 39.1 394 42-509 29-433 (544)
6 3etc_A AMP-binding protein; ad 100.0 1.9E-60 6.6E-65 500.6 39.4 400 40-509 53-469 (580)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 5.4E-61 1.9E-65 501.5 34.1 391 42-509 24-424 (539)
8 3r44_A Fatty acyl COA syntheta 100.0 1.2E-60 4E-65 496.4 35.7 391 41-509 14-407 (517)
9 3c5e_A Acyl-coenzyme A synthet 100.0 5.2E-60 1.8E-64 496.6 40.3 398 40-509 35-450 (570)
10 3t5a_A Long-chain-fatty-acid-- 100.0 9.9E-61 3.4E-65 493.5 29.7 397 40-509 21-476 (480)
11 2d1s_A Luciferase, luciferin 4 100.0 9.5E-60 3.3E-64 492.8 37.0 398 43-509 25-435 (548)
12 4gr5_A Non-ribosomal peptide s 100.0 1.2E-59 4.1E-64 494.6 36.4 375 40-509 72-463 (570)
13 3ivr_A Putative long-chain-fat 100.0 1.6E-59 5.6E-64 487.4 36.7 385 41-509 4-392 (509)
14 4fuq_A Malonyl COA synthetase; 100.0 7.4E-60 2.5E-64 488.8 32.2 386 47-509 4-393 (503)
15 2v7b_A Benzoate-coenzyme A lig 100.0 2.9E-59 1E-63 487.8 35.8 397 40-509 21-423 (529)
16 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.3E-59 1.1E-63 484.4 35.2 380 42-509 1-396 (504)
17 1pg4_A Acetyl-COA synthetase; 100.0 3E-59 1E-63 498.1 35.5 410 42-509 75-511 (652)
18 1ry2_A Acetyl-coenzyme A synth 100.0 8.5E-59 2.9E-63 494.9 34.3 411 42-509 81-520 (663)
19 3rg2_A Enterobactin synthase c 100.0 3.1E-58 1.1E-62 488.1 36.6 393 42-509 26-428 (617)
20 4dg8_A PA1221; ANL superfamily 100.0 3.3E-58 1.1E-62 486.3 36.4 372 41-509 25-413 (620)
21 3tsy_A Fusion protein 4-coumar 100.0 4E-58 1.4E-62 511.8 35.7 422 20-509 42-475 (979)
22 3l8c_A D-alanine--poly(phospho 100.0 3.1E-58 1.1E-62 479.3 32.4 378 42-509 3-397 (521)
23 3fce_A D-alanine--poly(phospho 100.0 1.4E-58 4.9E-63 480.7 28.4 376 44-509 2-393 (512)
24 1amu_A GRSA, gramicidin synthe 100.0 1.9E-57 6.3E-62 476.5 35.9 373 42-509 38-424 (563)
25 3e7w_A D-alanine--poly(phospho 100.0 1.1E-57 3.8E-62 473.7 32.8 375 44-509 2-392 (511)
26 3kxw_A Saframycin MX1 syntheta 100.0 2.2E-57 7.5E-62 480.4 31.3 393 40-509 8-452 (590)
27 3gqw_A Fatty acid AMP ligase; 100.0 1.1E-56 3.8E-61 473.8 35.9 398 32-509 10-455 (576)
28 3ite_A SIDN siderophore synthe 100.0 6.5E-57 2.2E-61 473.6 32.9 393 40-509 17-421 (562)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 3.9E-57 1.3E-61 468.4 28.4 374 41-509 20-399 (505)
30 3ipl_A 2-succinylbenzoate--COA 100.0 8.2E-57 2.8E-61 466.4 29.0 386 44-509 2-392 (501)
31 2vsq_A Surfactin synthetase su 100.0 7.8E-54 2.7E-58 488.9 38.2 377 42-509 463-855 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.8E-34 1.3E-38 282.3 12.6 209 219-509 36-245 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.2E-31 4.1E-36 272.5 21.1 229 216-506 81-313 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 4.6E-31 1.6E-35 268.3 23.4 231 216-508 86-321 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 5.7E-31 2E-35 268.0 22.7 246 199-508 73-323 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.2E-29 4.1E-34 252.0 17.4 229 217-500 88-351 (369)
37 4eql_A 4-substituted benzoates 96.1 0.037 1.3E-06 56.6 11.7 32 217-248 90-122 (581)
38 4b2g_A GH3-1 auxin conjugating 94.6 0.39 1.3E-05 49.2 13.4 32 217-248 96-128 (609)
39 2y4o_A Phenylacetate-coenzyme 92.0 1.8 6.3E-05 42.7 13.3 126 56-184 90-224 (443)
40 3qov_A Phenylacetate-coenzyme 92.0 1 3.5E-05 44.4 11.4 124 58-184 86-218 (436)
41 2y27_A Phenylacetate-coenzyme 90.7 1.4 4.6E-05 43.5 10.8 125 56-183 88-221 (437)
42 3ipl_A 2-succinylbenzoate--COA 86.9 9.8 0.00034 38.0 14.3 122 56-183 161-285 (501)
43 1mdb_A 2,3-dihydroxybenzoate-A 82.4 21 0.00071 36.0 14.4 123 56-184 180-310 (539)
44 3hgu_A EHPF; phenazine, antibi 82.3 5.7 0.0002 37.9 9.7 105 56-164 89-220 (369)
45 2d1s_A Luciferase, luciferin 4 81.3 10 0.00034 38.5 11.5 122 58-183 192-320 (548)
46 3r44_A Fatty acyl COA syntheta 77.0 24 0.00082 35.3 12.7 121 57-184 169-296 (517)
47 4dg8_A PA1221; ANL superfamily 76.3 16 0.00054 37.8 11.3 124 56-185 162-289 (620)
48 3fce_A D-alanine--poly(phospho 75.5 21 0.00073 35.6 11.8 123 56-183 142-272 (512)
49 3e7w_A D-alanine--poly(phospho 75.1 31 0.0011 34.3 13.0 123 56-183 141-271 (511)
50 4gr5_A Non-ribosomal peptide s 74.4 13 0.00046 37.8 10.1 124 56-185 212-339 (570)
51 3ivr_A Putative long-chain-fat 73.7 50 0.0017 32.8 14.0 120 56-182 158-282 (509)
52 3o83_A Peptide arylation enzym 73.3 21 0.00071 36.1 11.2 122 56-183 189-318 (544)
53 3kxw_A Saframycin MX1 syntheta 72.6 24 0.00083 35.9 11.6 124 56-184 165-301 (590)
54 3rg2_A Enterobactin synthase c 72.1 43 0.0015 34.4 13.4 123 57-185 183-315 (617)
55 3tbh_A O-acetyl serine sulfhyd 69.5 22 0.00074 33.4 9.5 66 93-158 61-127 (334)
56 3g7s_A Long-chain-fatty-acid-- 68.7 55 0.0019 32.9 13.2 107 218-328 32-140 (549)
57 1v25_A Long-chain-fatty-acid-C 67.0 58 0.002 32.7 12.8 101 218-326 31-133 (541)
58 3ni2_A 4-coumarate:COA ligase; 66.7 35 0.0012 34.2 11.2 101 218-328 35-137 (536)
59 3c5e_A Acyl-coenzyme A synthet 64.6 40 0.0014 34.2 11.1 124 56-184 204-334 (570)
60 3vc3_A Beta-cyanoalnine syntha 63.2 36 0.0012 32.1 9.7 70 89-158 73-142 (344)
61 1pg4_A Acetyl-COA synthetase; 63.1 44 0.0015 34.6 11.3 125 57-185 255-391 (652)
62 3rix_A Luciferase, luciferin 4 63.0 33 0.0011 34.6 10.1 123 58-183 190-318 (550)
63 3t5a_A Long-chain-fatty-acid-- 62.2 83 0.0028 30.7 12.8 107 218-328 37-148 (480)
64 1t5h_X 4-chlorobenzoyl COA lig 61.4 73 0.0025 31.5 12.2 99 218-326 15-117 (504)
65 1ry2_A Acetyl-coenzyme A synth 61.2 64 0.0022 33.4 12.1 100 218-322 95-196 (663)
66 1amu_A GRSA, gramicidin synthe 60.4 76 0.0026 32.0 12.3 96 218-325 52-149 (563)
67 3etc_A AMP-binding protein; ad 60.1 48 0.0017 33.7 10.8 124 56-184 223-353 (580)
68 4gs5_A Acyl-COA synthetase (AM 59.1 32 0.0011 32.5 8.6 127 46-183 28-159 (358)
69 3nyq_A Malonyl-COA ligase; A/B 55.7 76 0.0026 31.5 11.2 103 56-165 153-259 (505)
70 4fuq_A Malonyl COA synthetase; 54.6 74 0.0025 31.5 10.9 85 239-326 28-114 (503)
71 4aec_A Cysteine synthase, mito 51.3 68 0.0023 31.2 9.5 63 95-157 166-229 (430)
72 2v7b_A Benzoate-coenzyme A lig 51.1 68 0.0023 32.0 10.1 98 218-327 36-135 (529)
73 2vsq_A Surfactin synthetase su 50.0 43 0.0015 38.1 9.1 123 56-184 605-732 (1304)
74 2q3b_A Cysteine synthase A; py 47.6 95 0.0033 28.5 9.7 64 94-158 58-122 (313)
75 3ijw_A Aminoglycoside N3-acety 47.4 29 0.001 31.3 5.7 25 88-112 18-42 (268)
76 4epl_A Jasmonic acid-amido syn 46.8 31 0.0011 35.1 6.4 31 217-247 95-126 (581)
77 3tsy_A Fusion protein 4-coumar 46.2 86 0.0029 34.2 10.5 99 218-326 74-174 (979)
78 4eez_A Alcohol dehydrogenase 1 45.1 53 0.0018 30.7 7.6 77 77-156 136-215 (348)
79 2egu_A Cysteine synthase; O-ac 43.9 1.1E+02 0.0036 28.1 9.4 64 94-158 56-120 (308)
80 3ezx_A MMCP 1, monomethylamine 43.8 90 0.0031 27.0 8.3 52 267-318 93-149 (215)
81 1ve1_A O-acetylserine sulfhydr 42.7 1.4E+02 0.0049 27.1 10.1 64 94-158 51-117 (304)
82 3l8c_A D-alanine--poly(phospho 41.7 1.3E+02 0.0044 29.7 10.4 81 238-321 28-110 (521)
83 2nyg_A YOKD protein; PFAM02522 41.2 43 0.0015 30.3 5.9 24 89-112 17-40 (273)
84 2pqm_A Cysteine synthase; OASS 40.9 1.1E+02 0.0037 28.6 9.0 63 95-158 70-133 (343)
85 3ite_A SIDN siderophore synthe 40.5 1.3E+02 0.0044 30.2 10.2 115 69-184 184-306 (562)
86 2v03_A Cysteine synthase B; py 40.4 1.6E+02 0.0054 26.9 9.9 64 94-158 52-116 (303)
87 1z7w_A Cysteine synthase; tran 40.0 1.5E+02 0.0051 27.3 9.8 65 94-158 57-122 (322)
88 1ofu_X SULA, hypothetical prot 38.6 1.2E+02 0.0041 23.4 7.3 54 90-143 46-101 (119)
89 3sma_A FRBF; N-acetyl transfer 38.4 50 0.0017 30.1 5.8 30 76-112 20-49 (286)
90 3pc3_A CG1753, isoform A; CBS, 37.2 1.3E+02 0.0044 30.1 9.4 61 96-157 106-167 (527)
91 3ju7_A Putative PLP-dependent 35.8 99 0.0034 29.2 8.0 61 92-155 68-135 (377)
92 3dwg_A Cysteine synthase B; su 35.8 1.8E+02 0.0063 26.8 9.7 64 94-158 64-128 (325)
93 3gqw_A Fatty acid AMP ligase; 35.5 2.1E+02 0.007 28.6 10.8 87 238-327 48-143 (576)
94 3tqh_A Quinone oxidoreductase; 34.7 1.5E+02 0.005 27.2 8.8 75 77-156 125-203 (321)
95 1zsy_A Mitochondrial 2-enoyl t 34.6 1.5E+02 0.005 27.7 8.9 78 78-156 140-223 (357)
96 3ist_A Glutamate racemase; str 33.3 1.4E+02 0.0048 26.8 8.1 77 48-131 20-96 (269)
97 1oft_A SULA, hypothetical prot 33.2 1.3E+02 0.0044 24.7 6.9 55 90-144 88-144 (161)
98 4h1h_A LMO1638 protein; MCCF-l 32.3 68 0.0023 29.9 6.0 60 98-157 8-86 (327)
99 3two_A Mannitol dehydrogenase; 32.0 1.4E+02 0.0048 27.7 8.3 74 77-154 149-225 (348)
100 1h2b_A Alcohol dehydrogenase; 31.9 1.5E+02 0.005 27.8 8.4 62 93-157 176-239 (359)
101 3l6b_A Serine racemase; pyrido 31.0 98 0.0034 29.0 6.9 58 101-159 75-132 (346)
102 3s2e_A Zinc-containing alcohol 31.0 1.7E+02 0.0057 27.0 8.6 77 77-157 139-218 (340)
103 4epl_A Jasmonic acid-amido syn 30.8 18 0.00061 36.8 1.7 21 400-420 319-341 (581)
104 3jv7_A ADH-A; dehydrogenase, n 30.8 1.6E+02 0.0056 27.2 8.5 78 78-158 143-225 (345)
105 3sr3_A Microcin immunity prote 30.0 79 0.0027 29.6 6.0 60 98-157 9-87 (336)
106 1o69_A Aminotransferase; struc 29.4 2.3E+02 0.0078 26.6 9.5 61 94-157 64-130 (394)
107 3fpc_A NADP-dependent alcohol 27.2 1.3E+02 0.0046 27.9 7.2 74 78-155 140-217 (352)
108 1y7l_A O-acetylserine sulfhydr 27.1 2.8E+02 0.0096 25.3 9.3 64 94-158 53-117 (316)
109 4h27_A L-serine dehydratase/L- 27.0 1.2E+02 0.004 28.7 6.7 56 105-160 95-150 (364)
110 3tla_A MCCF; serine protease, 26.6 88 0.003 29.7 5.6 60 98-157 39-117 (371)
111 4e5s_A MCCFLIKE protein (BA_56 25.7 95 0.0032 29.0 5.6 60 98-157 8-86 (331)
112 1o58_A O-acetylserine sulfhydr 25.5 2.9E+02 0.01 25.0 9.0 62 94-158 58-120 (303)
113 1eg5_A Aminotransferase; PLP-d 25.5 2.2E+02 0.0074 26.3 8.5 33 100-132 87-119 (384)
114 2e7j_A SEP-tRNA:Cys-tRNA synth 25.3 3.2E+02 0.011 24.9 9.7 56 99-157 90-155 (371)
115 3ri6_A O-acetylhomoserine sulf 25.3 2.3E+02 0.0077 27.4 8.6 62 106-167 100-164 (430)
116 2jtq_A Phage shock protein E; 25.1 1.5E+02 0.0051 20.6 5.6 46 76-128 22-67 (85)
117 1gu7_A Enoyl-[acyl-carrier-pro 24.0 2.1E+02 0.0072 26.6 8.0 79 77-156 138-223 (364)
118 3a2k_A TRNA(Ile)-lysidine synt 23.9 3.5E+02 0.012 26.4 9.7 70 89-158 4-87 (464)
119 2gzm_A Glutamate racemase; enz 23.9 3.1E+02 0.011 24.3 8.7 78 47-131 17-94 (267)
120 3a2b_A Serine palmitoyltransfe 23.8 4E+02 0.014 24.7 10.1 55 99-157 124-181 (398)
121 3isl_A Purine catabolism prote 23.7 3.2E+02 0.011 25.5 9.4 58 99-157 83-144 (416)
122 4ej6_A Putative zinc-binding d 23.5 2.2E+02 0.0075 26.7 8.0 58 94-155 175-233 (370)
123 3dzz_A Putative pyridoxal 5'-p 23.1 2.2E+02 0.0076 26.4 8.1 54 100-156 107-167 (391)
124 1mdo_A ARNB aminotransferase; 23.0 2.1E+02 0.0072 26.6 7.9 55 97-155 74-133 (393)
125 2cf5_A Atccad5, CAD, cinnamyl 22.9 2.1E+02 0.0073 26.6 7.7 77 77-156 152-232 (357)
126 4a2c_A Galactitol-1-phosphate 22.7 3.1E+02 0.011 25.1 8.9 63 92-158 151-214 (346)
127 1y81_A Conserved hypothetical 22.2 1.8E+02 0.0063 22.8 6.0 57 102-161 70-126 (138)
128 3ss7_X D-serine dehydratase; t 22.2 4.5E+02 0.015 25.4 10.0 57 105-161 162-218 (442)
129 3uhf_A Glutamate racemase; str 22.2 2.1E+02 0.0072 25.7 7.0 62 48-116 39-100 (274)
130 2ayi_A Aminopeptidase T; metal 21.9 1.8E+02 0.0061 28.0 6.9 51 83-133 4-58 (408)
131 1uuf_A YAHK, zinc-type alcohol 21.9 2.1E+02 0.0073 26.8 7.5 60 92-155 185-244 (369)
132 1wy5_A TILS, hypothetical UPF0 21.7 4.6E+02 0.016 23.8 10.3 72 87-158 8-93 (317)
133 1pl8_A Human sorbitol dehydrog 21.6 2.2E+02 0.0074 26.5 7.5 73 78-155 146-222 (356)
134 2ch1_A 3-hydroxykynurenine tra 21.6 3.8E+02 0.013 24.8 9.4 57 99-156 90-150 (396)
135 4b7c_A Probable oxidoreductase 21.6 3.1E+02 0.011 25.0 8.6 58 95-155 143-201 (336)
136 3out_A Glutamate racemase; str 21.5 3.3E+02 0.011 24.2 8.3 60 49-115 23-82 (268)
137 4d9i_A Diaminopropionate ammon 20.9 4E+02 0.014 25.2 9.3 59 101-160 110-169 (398)
138 1zuw_A Glutamate racemase 1; ( 20.9 3.6E+02 0.012 24.0 8.4 62 47-115 17-79 (272)
139 3krt_A Crotonyl COA reductase; 20.8 2.7E+02 0.0093 27.0 8.2 76 77-156 198-280 (456)
140 2rkb_A Serine dehydratase-like 20.7 1.6E+02 0.0055 27.0 6.2 57 102-159 54-110 (318)
141 1j0a_A 1-aminocyclopropane-1-c 20.5 1.7E+02 0.0058 26.9 6.4 57 103-159 71-129 (325)
142 2z9v_A Aspartate aminotransfer 20.0 3.4E+02 0.012 25.1 8.6 58 99-157 80-142 (392)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.3e-61 Score=505.69 Aligned_cols=403 Identities=22% Similarity=0.262 Sum_probs=339.7
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCC--CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (510)
Q Consensus 38 ~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~--~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~ 115 (510)
.+.+..++.++|+++++++|+++|+++. ++ ..+..+++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 14 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 14 LYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 4455689999999999999999999987 52 123346899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (510)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 195 (510)
++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... ....++..+..
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------ 156 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------------ 156 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------------
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------------
Confidence 9999999999999999999999999999999999999999998777665544332 24455555432
Q ss_pred ceeeeHHHHHHcCCCCCCCCCCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455 196 VSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (510)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 274 (510)
...++++..............+ +++++|+|||||||.||||+++|+++.+.+..+...+ ++...|++++.+|
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 --VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMP 229 (549)
T ss_dssp --SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSC
T ss_pred --CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCc
Confidence 2345666655432222233334 8999999999999999999999999999999988877 8889999999999
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhh
Q 010455 275 LAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (510)
Q Consensus 275 l~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (510)
++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 291 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------ 291 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------
Confidence 9999998887789999999999875 999999999999999999999999998764332110
Q ss_pred hhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh----cC---CCeeeeccccccccceec
Q 010455 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGLTESCSGCFT 426 (510)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~----~g---~~l~~~yG~tE~~~~~~~ 426 (510)
..++ ++||.+++||+++++++.+++.+. ++ +.+++.||+||++.+++.
T Consensus 292 -----------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 346 (549)
T 3g7s_A 292 -----------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT 346 (549)
T ss_dssp -----------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred -----------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence 0011 389999999999999999999887 56 889999999999988777
Q ss_pred ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh---ccC--ccccCCe-
Q 010455 427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTGKN- 500 (510)
Q Consensus 427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~---~~g--w~~TGDl- 500 (510)
.........+++|+|+++++++|+|.+++++++.| +.|||+|+||+++.|||++|+.+.+.| .+| ||+|||+
T Consensus 347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~ 424 (549)
T 3g7s_A 347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG 424 (549)
T ss_dssp CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEE
T ss_pred CCccccCcCCCccccCCCCEEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEE
Confidence 65554445589999999999999996777777766 899999999999999999999999998 678 9999999
Q ss_pred eeccCCccC
Q 010455 501 PWQYTFKKL 509 (510)
Q Consensus 501 ~~d~dG~~~ 509 (510)
++|+||.+.
T Consensus 425 ~~~~dG~l~ 433 (549)
T 3g7s_A 425 FIDEEGFLH 433 (549)
T ss_dssp EECTTSCEE
T ss_pred EEcCCceEE
Confidence 999999764
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.7e-62 Score=508.74 Aligned_cols=416 Identities=21% Similarity=0.283 Sum_probs=337.9
Q ss_pred CCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCC
Q 010455 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (510)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~ 100 (510)
.+..+|++..+...++. ..++.++|.++++++|+++|+++. ++. +.+||+||.++++++|++|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44556666665433332 478999999999999999999864 322 5799999999999999999999999
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010455 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (510)
Q Consensus 101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~ 180 (510)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+..... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988776655433221 11 33444
Q ss_pred cCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcc
Q 010455 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (510)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~ 260 (510)
+.... ....++++..............++++++|+|||||||.||||+++|+++++.+......... .
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~ 217 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-N 217 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC-S
T ss_pred cCCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc-c
Confidence 33211 23456666554433333445678999999999999999999999999999887664432100 1
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccC
Q 010455 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338 (510)
Q Consensus 261 ~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 338 (510)
..+...|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~---------- 287 (536)
T 3ni2_A 218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK---------- 287 (536)
T ss_dssp SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT----------
T ss_pred ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHh----------
Confidence 25788999999999999999865 7789999999999875 99999999999999999999999999864
Q ss_pred hhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccc
Q 010455 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL 417 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~ 417 (510)
.+..+..++ ++||.+++||+++++++.+++++.+ ++.+++.||+
T Consensus 288 ---------------------------~~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~ 332 (536)
T 3ni2_A 288 ---------------------------SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM 332 (536)
T ss_dssp ---------------------------CSCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ---------------------------CcccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence 111222222 3899999999999999999999988 8999999999
Q ss_pred cccccceeccc----CCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc
Q 010455 418 TESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 492 (510)
Q Consensus 418 tE~~~~~~~~~----~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~ 492 (510)
||++.+++... ......++++|+|+++++++|+|.+++.+++.| +.|||+|+|++++.|||++|+.+.+.| .+
T Consensus 333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~ 410 (536)
T 3ni2_A 333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKE 410 (536)
T ss_dssp GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCC
Confidence 99987655432 112334589999999999999995557777666 899999999999999999999999999 89
Q ss_pred CccccCCe-eeccCCccC
Q 010455 493 GWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 493 gw~~TGDl-~~d~dG~~~ 509 (510)
|||+|||+ ++|+||++.
T Consensus 411 g~~~TGDl~~~~~dG~l~ 428 (536)
T 3ni2_A 411 GWLHTGDIGYIDDDDELF 428 (536)
T ss_dssp SCEEEEEEEEECTTSCEE
T ss_pred CceEcccEEEEcCCceEE
Confidence 99999999 999999864
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.5e-61 Score=507.10 Aligned_cols=410 Identities=22% Similarity=0.328 Sum_probs=331.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455 36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (510)
Q Consensus 36 ~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~ 115 (510)
+..+.+..|+.++|.++++++|+++|++... ++..+ +.+||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 3444567899999999999999999976220 21111 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (510)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 195 (510)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+...... .+.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhh-CCCcceEEEEcCCccc---------
Confidence 999999999999999999999999999999999999999999877766554332 2445666665543211
Q ss_pred ceeeeHHHHHHcCCC------C-CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcE
Q 010455 196 VSCFSWEEFLQLGTL------D-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 268 (510)
Q Consensus 196 ~~~~~~~~~~~~~~~------~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (510)
.....+.++...... . .+.....++++++|+|||||||.||+|+++|+++...+......+ ....+.++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 123455555543211 1 111222457899999999999999999999999998887755431 0126778999
Q ss_pred EEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455 269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (510)
Q Consensus 269 ~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (510)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 298 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS------------------ 298 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC------------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC------------------
Confidence 9999999999999888889999999999875 999999999999999999999999998751
Q ss_pred HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCC-eeeeccccccccceec
Q 010455 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFT 426 (510)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~-l~~~yG~tE~~~~~~~ 426 (510)
...+..++ ++||.+++||+++++++.+++.+.++.. +++.||+||++..++.
T Consensus 299 -------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 299 -------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp -------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred -------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11222222 3899999999999999999999999875 9999999999987776
Q ss_pred ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eecc
Q 010455 427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQY 504 (510)
Q Consensus 427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~ 504 (510)
...... ..+++|+|+|+++++|+|.+++.+++.| +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 655443 3489999999999999995556666665 899999999999999999999999999 8999999999 9999
Q ss_pred CCccC
Q 010455 505 TFKKL 509 (510)
Q Consensus 505 dG~~~ 509 (510)
||++.
T Consensus 429 dG~l~ 433 (550)
T 3rix_A 429 DEHFF 433 (550)
T ss_dssp TCCEE
T ss_pred CceEE
Confidence 99864
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.8e-61 Score=500.52 Aligned_cols=397 Identities=23% Similarity=0.311 Sum_probs=329.1
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
+.++.++|+++++++|+++|+++. ++ +..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 22 2237899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (510)
|+++|++++|+++.++.+++.++++.++++++|++.+....+...... .+.++.++.+++... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCC----------cccccH
Confidence 999999999999999999999999999999999998876655443322 244555666544321 012345
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 010455 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (510)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (510)
++++..... .....++++++|+|||||||.||||++||+++++..... ...+ .+.++|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 555433211 134467899999999999999999999999998776652 2333 678999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 290 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------------- 290 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC----------------------
Confidence 98777889999999999863 999999999999999999999999998764322100
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC------
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------ 431 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~------ 431 (510)
++ ++||.+++||+++++++.+++ +.+|+++++.||+||++.+++......
T Consensus 291 ---------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 346 (541)
T 1v25_A 291 ---------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 346 (541)
T ss_dssp ---------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred ---------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence 11 389999999999999999999 557999999999999988776553321
Q ss_pred ----CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccC
Q 010455 432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYT 505 (510)
Q Consensus 432 ----~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~d 505 (510)
....+++|+|+|+++++|+| +++++++.+.++.|||+|+||+++.|||++|+.+.+.| .+|||+|||+ ++|+|
T Consensus 347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 02247899999999999999 88888876545789999999999999999999999999 5999999999 99999
Q ss_pred CccC
Q 010455 506 FKKL 509 (510)
Q Consensus 506 G~~~ 509 (510)
|++.
T Consensus 426 G~l~ 429 (541)
T 1v25_A 426 GYVE 429 (541)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 9764
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.2e-61 Score=502.17 Aligned_cols=394 Identities=14% Similarity=0.168 Sum_probs=329.2
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 197 (510)
|+++|++++|+++.++.+++.++++.++++++|++..... ...+...........++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999987541 111222222244455555544321
Q ss_pred eeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455 198 CFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (510)
Q Consensus 198 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 276 (510)
...+.++..... .........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332 12222455689999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhh
Q 010455 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (510)
Q Consensus 277 h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (510)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++...
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 300 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA---------------------- 300 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT----------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchh----------------------
Confidence 9999873 7789999999999875 99999999999999999999999999876321
Q ss_pred hhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCc
Q 010455 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433 (510)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~ 433 (510)
....+++ +||.+++||+++++++.+++.+.+|+.+++.||+||++..++........
T Consensus 301 ---------------~~~~~~~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 301 ---------------QYKDQIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ---------------TTHHHHT--------TCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ---------------hccccCC--------cceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 1222333 89999999999999999999999999999999999987654433322233
Q ss_pred cCCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 434 ~~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
..+++|+|+ ++++++|+| +++++++.| +.|||+|+||+++.||+++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~ 433 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLR 433 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEE
Confidence 347899996 899999999 898888777 899999999999999999999999999 8999999999 999999864
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.9e-60 Score=500.58 Aligned_cols=400 Identities=17% Similarity=0.171 Sum_probs=331.1
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
...+.+.++|+++|+++|+++|+++. ++ .+..+.+||+||.++++++|.+|++.|+++||+|+++++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 44566679999999999999999986 43 234478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh--hhHhhcCccCCCCc-cEEEEecCCChhhhhHhhhcCc
Q 010455 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGV 196 (510)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 196 (510)
|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+.+..... +.+ ..++.++... ..
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDV----------LE 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSC----------CT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCcc----------cc
Confidence 99999999999999999999999999999999999988764 4443332222 222 3444544321 11
Q ss_pred eeeeHHHHHHcCCCCCC-C---CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010455 197 SCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 272 (510)
.+..+.+.+........ . ....++++++|+|||||||.||+|.++|.+++..+......+ .+.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence 25567766654422111 1 245789999999999999999999999999988877655444 78899999999
Q ss_pred cChHHHHHHHH-HHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHH
Q 010455 273 LPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA 348 (510)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (510)
.|+.|..+... ++.++..|+++++.+ +++..+++.++++++|+++++|++++.+++.
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------- 333 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------- 333 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-------------------
Confidence 99999888774 778999999998873 3899999999999999999999999988641
Q ss_pred HHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceeccc
Q 010455 349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL 428 (510)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~ 428 (510)
.....++ ++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus 334 -------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 334 -------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp -------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred -------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 1112222 3899999999999999999999989999999999999987666544
Q ss_pred CCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec-----CCccccccCCchhhhhhhccCccccCCe-ee
Q 010455 429 ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFSGYYKRPDLTEEVIVDGWFHTGKN-PW 502 (510)
Q Consensus 429 ~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~ 502 (510)
.. ...++++|+|+||++++|+| ++|++++.| +.|||+|+| ++++.||+++|+.+.+.|.+|||+|||+ ++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 33 33458999999999999999 888888777 899999997 7899999999999999999999999999 99
Q ss_pred ccCCccC
Q 010455 503 QYTFKKL 509 (510)
Q Consensus 503 d~dG~~~ 509 (510)
|+||++.
T Consensus 463 d~dG~l~ 469 (580)
T 3etc_A 463 DEDGYLW 469 (580)
T ss_dssp CTTSCEE
T ss_pred CCCCcEE
Confidence 9999864
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=5.4e-61 Score=501.47 Aligned_cols=391 Identities=18% Similarity=0.184 Sum_probs=320.6
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 197 (510)
|+++|++++|++|.++.+++.++++.++++++|++++... ..........+.++.++..++...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111233444444433210
Q ss_pred eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h 277 (510)
+.++..............++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11111111111122345678999999999999999999999999999998887777 7889999999999999
Q ss_pred HHHHH--HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455 278 IYDQI--IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (510)
Q Consensus 278 ~~g~~--~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
.+++. .++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------- 293 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------- 293 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc---------------------
Confidence 99987 47889999999999875 9999999999999999999999999987633211
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434 (510)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~ 434 (510)
..++ ++||.+++||+++++++.+++.+.+|+.+++.||+||++..++.........
T Consensus 294 ----------------~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 349 (539)
T 1mdb_A 294 ----------------RDDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (539)
T ss_dssp ----------------CCCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred ----------------CCCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhc
Confidence 0011 3899999999999999999999988999999999999654333211111223
Q ss_pred CCccccccCC-eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 435 IGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 435 ~~svG~p~~g-~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
.+++|+|+++ .+++|+| +++++++.| +.|||+|+||+++.|||++|+.+.+.| .+|||+|||+ ++|+||++.
T Consensus 350 ~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~ 424 (539)
T 1mdb_A 350 VNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424 (539)
T ss_dssp HHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred CCCCCcccCCCceEEEEC-CCCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEE
Confidence 4789999976 5899999 888888776 899999999999999999999999999 7999999999 999999764
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.2e-60 Score=496.38 Aligned_cols=391 Identities=21% Similarity=0.279 Sum_probs=324.4
Q ss_pred CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (510)
Q Consensus 41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l 120 (510)
...++.++|+++++++|+++|+++. +.. +.+||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 86 (517)
T 3r44_A 14 KMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFY 86 (517)
T ss_dssp GGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHH
Confidence 3579999999999999999999875 322 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (510)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 200 (510)
||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.+.. ...
T Consensus 87 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~ 150 (517)
T 3r44_A 87 GAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------ADS 150 (517)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HHH
T ss_pred HHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------ccc
Confidence 99999999999999999999999999999999999987766554332211 11111111110 012
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (510)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (510)
+.+...............++++++|+|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++|..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 225 (517)
T 3r44_A 151 LAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVAA 225 (517)
T ss_dssp HHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHHH
T ss_pred HHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHHH
Confidence 33444333333334456789999999999999999999999999999999988877 8899999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (510)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (510)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+..
T Consensus 226 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------- 276 (517)
T 3r44_A 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP----------------------------- 276 (517)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSH-----------------------------
T ss_pred HHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc-----------------------------
Confidence 9876666669999998875 9999999999999999999999999987521
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC-CccCCcc
Q 010455 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTV 438 (510)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-~~~~~sv 438 (510)
.....++ ++||.+++||+++++++.+++.+. ++.+++.||+||++..++...... ....+++
T Consensus 277 --------~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 339 (517)
T 3r44_A 277 --------EFAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSA 339 (517)
T ss_dssp --------HHHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCC
T ss_pred --------ccccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCC
Confidence 1112222 389999999999999999999887 999999999999988766544332 3445899
Q ss_pred ccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
|+|+++++++|+| +++..++.| .|||+|+|++++.|||++|+.+.+.|.+|||+|||+ ++|+||.+.
T Consensus 340 G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~ 407 (517)
T 3r44_A 340 GRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407 (517)
T ss_dssp BEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEE
T ss_pred CcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEE
Confidence 9999999999999 888776654 799999999999999999999999999999999999 999999864
No 9
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.2e-60 Score=496.58 Aligned_cols=398 Identities=17% Similarity=0.223 Sum_probs=330.0
Q ss_pred CCCCCHHHHHHHHHhh-----CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCch
Q 010455 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~ 113 (510)
...+++.++|++++++ +|+++|+++. ++ .+..+.+||+||.++++++|++|++. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999876 42 22247899999999999999999999 9999999999999999
Q ss_pred hHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (510)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 193 (510)
++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+.... .+.++.++.+++...
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CCceeEEEEecccCc--------
Confidence 99999999999999999999999999999999999999999999887766543332 244555666554211
Q ss_pred cCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 010455 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (510)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~~~ 271 (510)
..+..+++++.............++++++|+|||||||.||||+++|+ ++. ..... ..+ ++..+|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 013456666654432222344568999999999999999999999999 554 33333 444 7889999999
Q ss_pred ecChHHHHHHH-HHHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455 272 FLPLAHIYDQI-IETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (510)
Q Consensus 272 ~~pl~h~~g~~-~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (510)
.+|++|..++. .++.++..|+++++.+ .++..+++.++++++|+++++|+++..+++.
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 314 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------------------ 314 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------------------
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------------------
Confidence 99999999987 4788999999999985 3999999999999999999999999998641
Q ss_pred HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecc
Q 010455 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427 (510)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~ 427 (510)
. .+..++ ++||.+++||+++++++.+++.+.+|+.+++.||+||++.+++..
T Consensus 315 -------------------~-~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 366 (570)
T 3c5e_A 315 -------------------D-LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS 366 (570)
T ss_dssp -------------------C-TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred -------------------c-cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence 0 001111 389999999999999999999998899999999999998766554
Q ss_pred cCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEe-----cCCccccccCCchhhhhhhccCccccCCe-e
Q 010455 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYKRPDLTEEVIVDGWFHTGKN-P 501 (510)
Q Consensus 428 ~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~ 501 (510)
... ....+++|+|+++++++|+| +++++++.| +.|||+|+ |++++.||+++|+.+.+.|.+|||+|||+ +
T Consensus 367 ~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~ 442 (570)
T 3c5e_A 367 KTM-KIKPGYMGTAASCYDVQIID-DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGI 442 (570)
T ss_dssp TTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEE
T ss_pred ccc-ccCCCcccccCCCceEEEEC-CCCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEE
Confidence 332 23448999999999999999 888888776 89999999 99999999999999999999999999999 9
Q ss_pred eccCCccC
Q 010455 502 WQYTFKKL 509 (510)
Q Consensus 502 ~d~dG~~~ 509 (510)
+|+||++.
T Consensus 443 ~d~dG~l~ 450 (570)
T 3c5e_A 443 KDEDGYFQ 450 (570)
T ss_dssp ECTTSCEE
T ss_pred EcCCceEE
Confidence 99999864
No 10
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=9.9e-61 Score=493.52 Aligned_cols=397 Identities=16% Similarity=0.185 Sum_probs=311.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
.+..++.++|+++++++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 346899999999999999999999872111233445789999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCeEEEecC---CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCC-CccEEEEecCCChhhhhHhhhcC
Q 010455 120 EACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELG 195 (510)
Q Consensus 120 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 195 (510)
|||+++|++++||++ .++.+++.++++.++++++|++.+....+.+....... ....++.++...
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 168 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD----------- 168 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------
Confidence 999999999999999 77899999999999999999999888776654432211 111222222111
Q ss_pred ceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCC------CcEE
Q 010455 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTY 269 (510)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 269 (510)
.............++++++|+|||||||.||||++||+++.+++......+ .... +|++
T Consensus 169 ----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 011111223445678999999999999999999999999999998887777 5555 8999
Q ss_pred EEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHH
Q 010455 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343 (510)
Q Consensus 270 ~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (510)
++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999764 7889999999999862 899999999999999 88999998887652210
Q ss_pred HHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeeeeccc
Q 010455 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGL 417 (510)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~~yG~ 417 (510)
.+..+..++ ++||.+++||+++++++.+++.+.++ +.+++.||+
T Consensus 302 ----------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 111112222 38999999999999999999999874 469999999
Q ss_pred cccccceecccCCC------------------------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC
Q 010455 418 TESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473 (510)
Q Consensus 418 tE~~~~~~~~~~~~------------------------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~ 473 (510)
||++.+++...... ....+++|+|++ ++++|+|.+++++++.| +.|||+|+||
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g--~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDG--TVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTT--BCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCC--CEEEEEEeCC
Confidence 99998777654332 123368999999 99999993336777766 8999999999
Q ss_pred CccccccCCchhhhhhh------------ccCccccCCe-eeccCCccC
Q 010455 474 TLFSGYYKRPDLTEEVI------------VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 474 ~v~~gY~~~~~~~~~~~------------~~gw~~TGDl-~~d~dG~~~ 509 (510)
+++.||||+|+.|.++| .+|||+|||+ ++| ||++.
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~ 476 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMF 476 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEE
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEE
Confidence 99999999999999998 3569999999 997 89764
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=9.5e-60 Score=492.81 Aligned_cols=398 Identities=22% Similarity=0.328 Sum_probs=322.7
Q ss_pred CCHHH-HHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 43 ESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 43 ~sl~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
.++.+ +|.++++++ +++|+++. ++. +.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la 96 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIA 96 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred CcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Confidence 58999 899999999 99999863 221 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (510)
|+++|++++|+++.++.+++.++++.++++++|++.+....+.+..... +....++.++..... .....+
T Consensus 97 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~ 166 (548)
T 2d1s_A 97 GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVILDSKVDY---------RGYQCL 166 (548)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEeCCcccc---------cccccH
Confidence 9999999999999999999999999999999999998776654432211 223445554432100 012345
Q ss_pred HHHHHcCCCC-CCCCCC------CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455 202 EEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (510)
Q Consensus 202 ~~~~~~~~~~-~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 274 (510)
+++....... ...... .++++++++|||||||.||+|++||+++.+.+......+. ..++.++|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSC
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEecc
Confidence 6665443111 111111 2389999999999999999999999999998887665410 016788999999999
Q ss_pred hHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455 275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352 (510)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
++|.+++.. ++.++ .|+++++.+. ++..+++.++++++|+++++|+++..+++.
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------- 300 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS----------------------- 300 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC-----------------------
Confidence 999999876 55566 9999998774 999999999999999999999999998651
Q ss_pred hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC
Q 010455 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV 431 (510)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~ 431 (510)
+..+..++ ++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++.....
T Consensus 301 --------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~- 357 (548)
T 2d1s_A 301 --------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG- 357 (548)
T ss_dssp --------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-
T ss_pred --------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-
Confidence 11111122 3899999999999999999999988 68899999999998877664333
Q ss_pred CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 432 ~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
....+++|+|+|+++++|+|.+++++++.| +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||++.
T Consensus 358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~ 435 (548)
T 2d1s_A 358 DDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFF 435 (548)
T ss_dssp CCCTTCCBEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEE
T ss_pred cCCCCCCCccCCCceEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEE
Confidence 234489999999999999995567766665 899999999999999999999999999 7999999999 999999764
No 12
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.2e-59 Score=494.62 Aligned_cols=375 Identities=18% Similarity=0.203 Sum_probs=312.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
....++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44679999999999999999999865 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (510)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 199 (510)
|||+++|++++|+++.++.+++.++++.++++++|++......+ .....++..+..
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~---------------- 198 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA---------------- 198 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc----------------
Confidence 99999999999999999999999999999999999987654332 111122111110
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (510)
..............++++++|+|||||||.||||+++|+++.+.... ...+ ++.++|++++.+|++|..
T Consensus 199 -----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 267 (570)
T 4gr5_A 199 -----ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWDA 267 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSST
T ss_pred -----cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHHH
Confidence 00001112223456899999999999999999999999999877665 2333 678999999999999877
Q ss_pred HHHHHHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455 280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (510)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (510)
+...++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++....
T Consensus 268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------ 323 (570)
T 4gr5_A 268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE------------------------ 323 (570)
T ss_dssp HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------------------------
Confidence 77778889999999999763 899999999999999999999999998752110
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC---C
Q 010455 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---F 432 (510)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~---~ 432 (510)
++ ++||.+++||++++.++.+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 324 ----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 379 (570)
T 4gr5_A 324 ----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS 379 (570)
T ss_dssp ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred ----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence 11 3899999999999999888888776 789999999999987766543322 2
Q ss_pred ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc--------CccccCCe-ee
Q 010455 433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD--------GWFHTGKN-PW 502 (510)
Q Consensus 433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~--------gw~~TGDl-~~ 502 (510)
....++|+|+++++++|+| +++++++.| +.|||+|+|++++.|||++|+.+.++| .+ |||+|||+ ++
T Consensus 380 ~~~~~iG~p~~~~~v~i~d-~~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~ 456 (570)
T 4gr5_A 380 GTALPIGVPLAGKRAYVLD-DDLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR 456 (570)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred CCccccceeeCCCEEEEEC-CCCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence 2336799999999999999 888888776 999999999999999999999999998 43 79999999 99
Q ss_pred ccCCccC
Q 010455 503 QYTFKKL 509 (510)
Q Consensus 503 d~dG~~~ 509 (510)
|+||++.
T Consensus 457 d~dG~l~ 463 (570)
T 4gr5_A 457 RADGVLE 463 (570)
T ss_dssp CTTSCEE
T ss_pred CCCCeEE
Confidence 9999864
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.6e-59 Score=487.42 Aligned_cols=385 Identities=20% Similarity=0.249 Sum_probs=321.3
Q ss_pred CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (510)
Q Consensus 41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l 120 (510)
.+.|+.++|+++++++||++|+++. + +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (510)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 200 (510)
||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ....+..++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence 999999999999999999999999999999999999988776444442 2345566666554211 1
Q ss_pred HHHHHH-cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455 201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (510)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (510)
+.++.. ............++++++|+|||||||.||+|+++|+++.+.+.+....+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 122222 11222233456789999999999999999999999999999999988877 889999999999999999
Q ss_pred HHHHHHHH-HhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455 280 DQIIETHC-IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (510)
Q Consensus 280 g~~~~l~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (510)
++...+.+ +..|+++++...++..+++.++++++|+++++|+++..+++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 99876664 4455555555459999999999999999999999999987521
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCccCCc
Q 010455 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT 437 (510)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s 437 (510)
...++ +++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++.+++....... ..+
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 00111 289999999988 7788888887 8999999999999987766544322 256
Q ss_pred cccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
+|+|+++++++|+| +++++++.| +.|||+|+|++++.||+++|+.+.+.|.+|||+|||+ ++|+||++.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~ 392 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLF 392 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEE
T ss_pred ccccCCCcEEEEEC-CCCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEE
Confidence 99999999999999 888888776 8999999999999999999999999999999999999 999999864
No 14
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.4e-60 Score=488.75 Aligned_cols=386 Identities=22% Similarity=0.326 Sum_probs=314.9
Q ss_pred HHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 010455 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (510)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G 126 (510)
++|++.++++|+++++..... ++ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 478899999999999986410 22 579999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHH
Q 010455 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (510)
Q Consensus 127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (510)
++++|+++.++.+++.+++++++++++|++.+....+....... . ..+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976554333222111 1 12333322211 11222222
Q ss_pred cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 010455 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (510)
Q Consensus 207 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l 285 (510)
............++++++|+|||||||.||+|+++|+++.+.+..+...+ ++.++|++++.+|++|.+|+.. .+
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222233355789999999999999999999999999999999988877 8899999999999999999764 77
Q ss_pred HHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCC
Q 010455 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364 (510)
Q Consensus 286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (510)
.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++.
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~----------------------------------- 259 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS----------------------------------- 259 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-----------------------------------
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-----------------------------------
Confidence 88999999998875 9999999998 899999999999998641
Q ss_pred chhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCC
Q 010455 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 444 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g 444 (510)
+.....++ +++|.+++||+++++++.+.+.+.+|+.+++.||+||++..++... .....++++|+|+|+
T Consensus 260 --~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~ 328 (503)
T 4fuq_A 260 --PRLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPG 328 (503)
T ss_dssp --TTCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTT
T ss_pred --CCccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCC
Confidence 11111112 3899999999999999999999999999999999999987654332 333445899999999
Q ss_pred eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 445 ~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
++++|+|.+++++++.| +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus 329 ~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~ 393 (503)
T 4fuq_A 329 VSARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVH 393 (503)
T ss_dssp CEEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEE
T ss_pred eEEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEE
Confidence 99999996667777766 899999999999999999999999999 6999999999 999999764
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.9e-59 Score=487.85 Aligned_cols=397 Identities=18% Similarity=0.214 Sum_probs=318.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
...+++.++|+++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 345679999999999 9999999854 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCc-cEEEEecCCChhhhhHhhhcCcee
Q 010455 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC 198 (510)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 198 (510)
|||+++|++++|+++.++.+++.++++.++++++|++.+....+.+..... ... ..++..+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999988766554432211 122 344443322100 0011
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h 277 (510)
..++++..............++++++++|||||||.||+|+++|+++ .+........+ ++.++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence 24566655332222233457899999999999999999999999999 66666555445 7889999999999999
Q ss_pred HHHHHH-HHHHHhcCcEEEEeC--CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455 278 IYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (510)
Q Consensus 278 ~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
.+++.. ++.++..|+++++.+ .++..+++.++++++|+++++|+++..++...
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------ 292 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------ 292 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------
Confidence 999875 667999999999873 39999999999999999999999998876410
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434 (510)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~ 434 (510)
...... ..+||.+++||++++.++.+++.+.+|+.+++.||+||++.+++...... ..
T Consensus 293 -------------~~~~~~--------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~ 350 (529)
T 2v7b_A 293 -------------NLPARA--------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE 350 (529)
T ss_dssp -------------TCCCGG--------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred -------------cccccc--------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence 000000 02799999999999999999999989999999999999976655544333 33
Q ss_pred CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
.+++|+|+++++++|+| +++++++.| +.|||+|+|++++.|||++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus 351 ~~~~G~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~ 423 (529)
T 2v7b_A 351 YGTTGRPVPGYEIELRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYV 423 (529)
T ss_dssp TTSCCEECTTCEEEEEC-TTSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEE
T ss_pred cCCcccCCCCCEEEEEC-CCCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEE
Confidence 48999999999999999 888888776 8999999999999999999999999999999999999 999999764
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.3e-59 Score=484.40 Aligned_cols=380 Identities=19% Similarity=0.249 Sum_probs=309.8
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
+.++.++|+++++++|+++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999864 322 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE--cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 199 (510)
|+++|++++|+++.++.+++.++++.++++++|+ +....+.+..... .++ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eEE--------------------
Confidence 9999999999999999999999999999999999 6665444412111 111 221
Q ss_pred eHHHHHHcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010455 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (510)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 272 (510)
++++.... ..........++++++|+|||||||.||||+++|+++.+.+..+...+ ++ ..+|++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 12221110 011111345678999999999999999999999999999988877666 56 789999999
Q ss_pred cChHHHHHHH-HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455 273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (510)
Q Consensus 273 ~pl~h~~g~~-~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (510)
+|++|.+++. .++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 9999999985 57889999999999875 9999999999999999999999999987532100
Q ss_pred hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC
Q 010455 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430 (510)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~ 430 (510)
.+..++ ++||.+++||+++++++.+++++.+++.+++.||+||++. +....
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 000011 3899999999999999999999999999999999999933 33222
Q ss_pred CCccCCccccccCCeEEEEeecCCC---CcCCCCCCCcceEEEe-cCCccccccCCchhhhhhhccCccccCCe-eeccC
Q 010455 431 VFNMIGTVGVPMTTVEARLESVPEM---GYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT 505 (510)
Q Consensus 431 ~~~~~~svG~p~~g~~i~ivd~~~~---~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d 505 (510)
....+++|.|.++++++|+| +++ ++++.| +.|||+|+ |++++.||+++|+.+.+.|.+|||+|||+ ++|+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d 392 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence 22347899999999999999 666 555555 89999999 99999999999999999999999999999 99999
Q ss_pred CccC
Q 010455 506 FKKL 509 (510)
Q Consensus 506 G~~~ 509 (510)
|++.
T Consensus 393 G~l~ 396 (504)
T 1t5h_X 393 GTVR 396 (504)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 9864
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3e-59 Score=498.11 Aligned_cols=410 Identities=14% Similarity=0.186 Sum_probs=330.4
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
.+++.++|+++++++|+++|+++. ++..+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 356889999999999999999986 43334457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh---------hHhhcCccCC-CCccEEEEecCCChhhhhHh
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA 191 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 191 (510)
|+++|++++|+++.++.+++.+++++++++++|+++.... .+.+...... ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876421 2222222111 23456666653221000
Q ss_pred hhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010455 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (510)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~ 270 (510)
........|++++.............++++++|+|||||||.||||+++|++++..+.. ....+ ++.++|+++
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 00011345777765432222333456799999999999999999999999998877643 34445 788999999
Q ss_pred EecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455 271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (510)
Q Consensus 271 ~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (510)
+.+|++|..|+. .++.+|+.|+++++.+. ++..+++.++++++|+++++|++++.+++....
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------ 370 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------ 370 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc------------
Confidence 999999999985 47889999999999863 789999999999999999999999998642110
Q ss_pred HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccc
Q 010455 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC 421 (510)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~ 421 (510)
..+..++ ++||.+++||+++++++.+++.+.+| +.+++.||+||++
T Consensus 371 -----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 419 (652)
T 1pg4_A 371 -----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419 (652)
T ss_dssp -----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred -----------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccc
Confidence 0111122 38999999999999999999999888 8999999999999
Q ss_pred cceecccCC-CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCcc
Q 010455 422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF 495 (510)
Q Consensus 422 ~~~~~~~~~-~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~ 495 (510)
.+++..... ....++++|+|++|++++|+| ++|++++.| +.|||+|+| |+++.|||++++.+.+.| .+|||
T Consensus 420 ~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y 496 (652)
T 1pg4_A 420 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 (652)
T ss_dssp SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred cceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence 776655433 233458999999999999999 888887765 899999999 799999999999888877 38999
Q ss_pred ccCCe-eeccCCccC
Q 010455 496 HTGKN-PWQYTFKKL 509 (510)
Q Consensus 496 ~TGDl-~~d~dG~~~ 509 (510)
+|||+ ++|+||++.
T Consensus 497 ~TGDlg~~d~dG~l~ 511 (652)
T 1pg4_A 497 FSGDGARRDEDGYYW 511 (652)
T ss_dssp EEEEEEEECTTSCEE
T ss_pred ECCcEEEEcCCCcEE
Confidence 99999 999999865
No 18
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=8.5e-59 Score=494.91 Aligned_cols=411 Identities=18% Similarity=0.235 Sum_probs=329.7
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~-~~gv~~gd~Vai~~~ns~~~~~~~l 120 (510)
.+++.++|+++++++|+++|+++. ++..+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 367899999999999999999986 433344578999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCChhhhhHh
Q 010455 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (510)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 191 (510)
||+++|++++|+++.++.+++..++++++++++|+++.... .+.+... ..+.++.+++++...... .
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSS---C
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCc---c
Confidence 99999999999999999999999999999999999876532 2223222 224456677665432100 0
Q ss_pred hhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010455 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (510)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~ 270 (510)
.........|+++..............++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 000112345777665432222334456899999999999999999999999998876643 33344 788999999
Q ss_pred EecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455 271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (510)
Q Consensus 271 ~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (510)
+..|++|..+.. .++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+.+..
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-------------- 374 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG-------------- 374 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC--------------
Confidence 999999999985 47889999999999863 7899999999999999999999999875310
Q ss_pred HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccc
Q 010455 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC 421 (510)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~ 421 (510)
....+..++ ++||.+++||+++++++.+++.+.+| +.+++.||+||++
T Consensus 375 ---------------------~~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 425 (663)
T 1ry2_A 375 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 425 (663)
T ss_dssp ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred ---------------------ccccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence 000111122 38999999999999999999999887 8999999999998
Q ss_pred cceecccC--CCCccCCccccccCCeEEEEeecC-CCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh-c--cC
Q 010455 422 SGCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI-V--DG 493 (510)
Q Consensus 422 ~~~~~~~~--~~~~~~~svG~p~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~-~--~g 493 (510)
..++.... .....++++|+|++|++++|+| + +|++++. .++.|||+|+| |+++.|||++|+.+.+.| . +|
T Consensus 426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g 503 (663)
T 1ry2_A 426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 503 (663)
T ss_dssp SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence 76665543 2233458999999999999999 6 7877765 13899999999 589999999999998887 3 89
Q ss_pred ccccCCe-eeccCCccC
Q 010455 494 WFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 494 w~~TGDl-~~d~dG~~~ 509 (510)
||+|||+ ++|+||++.
T Consensus 504 ~y~TGDlg~~d~dG~l~ 520 (663)
T 1ry2_A 504 YYFTGDGAAKDKDGYIW 520 (663)
T ss_dssp SEEEEEEEEECTTCCEE
T ss_pred EEEcCCEEEEcCCCCEE
Confidence 9999999 999999864
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.1e-58 Score=488.13 Aligned_cols=393 Identities=16% Similarity=0.199 Sum_probs=326.4
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
..++.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 5789999999988 999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 197 (510)
|+++|++++|+++..+.+++.++++.+++++++++..... ............+..+....+...
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence 9999999999999999999999999999999999987641 111111111234444544443321
Q ss_pred eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h 277 (510)
..+.+...............++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 163 -HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAAH 236 (617)
T ss_dssp -TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred -cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccchh
Confidence 1234444433323333455689999999999999999999999999999999988887 8899999999999999
Q ss_pred HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (510)
Q Consensus 278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.......
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 297 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES------------------- 297 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-------------------
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-------------------
Confidence 998863 7889999999999875 899999999999999999999999998764322110
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434 (510)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~ 434 (510)
..++ ++||.+++||+++++++.+++.+.+|+++++.||+||++..++.........
T Consensus 298 ----------------~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~ 353 (617)
T 3rg2_A 298 ----------------RAQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKI 353 (617)
T ss_dssp ----------------TTTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHH
T ss_pred ----------------cccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccccc
Confidence 0011 3899999999999999999999989999999999999886554433222223
Q ss_pred CCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 435 ~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
..++|+|+ ++++++|+| +++++++.| +.|||+|+|++++.||+|+|+.|.+.| .+|||+|||+ ++|+||.+.
T Consensus 354 ~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 354 IHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 36789997 788999999 899888877 899999999999999999999999999 8999999999 999999764
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.3e-58 Score=486.27 Aligned_cols=372 Identities=16% Similarity=0.130 Sum_probs=308.9
Q ss_pred CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (510)
Q Consensus 41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l 120 (510)
...++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3579999999999999999999875 4 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (510)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 200 (510)
||+++|++++|++|.++.+++.++++.++++++++++...... .....+ .
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~--------------------- 145 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P--------------------- 145 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence 9999999999999999999999999999999999765433211 011111 0
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (510)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 280 (510)
+.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+ .+.++|+++..+|++|..+
T Consensus 146 ~~~~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 146 VRHLP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp GGGCC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred eccCC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 00000 001111223346899999999999999999999999999887766 3344 7889999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
+..++.+|+.|+++++.+ .++..+++.++++++|+++++|+++..+++..
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--------------------------- 271 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD--------------------------- 271 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---------------------------
Confidence 988899999999999964 28999999999999999999999999886410
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC---Cc
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN 433 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~---~~ 433 (510)
..++ ++||.+++||++++.+..+.+.+.+ ++++++.||+||++.++++..... ..
T Consensus 272 -------------~~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 330 (620)
T 4dg8_A 272 -------------PDCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330 (620)
T ss_dssp -------------GGGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred -------------hhhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence 0011 3899999999999988877776655 889999999999998766543322 23
Q ss_pred cCCccccccCCeEEEEeecCCCCc-CCCCCCCcceEEEecCCccccccCCchhhhhhh-cc-------CccccCCe-eec
Q 010455 434 MIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD-------GWFHTGKN-PWQ 503 (510)
Q Consensus 434 ~~~svG~p~~g~~i~ivd~~~~~~-~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~-------gw~~TGDl-~~d 503 (510)
...++|+|+++++++|+| +++.+ ++.| +.|||+|+|++++.||+|+|+.|.+.| .+ +||+|||+ ++|
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCceecccCcEEEEEC-ccCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 347899999999999999 78776 4555 899999999999999999999999999 32 79999999 999
Q ss_pred cCCccC
Q 010455 504 YTFKKL 509 (510)
Q Consensus 504 ~dG~~~ 509 (510)
+||.+.
T Consensus 408 ~dG~l~ 413 (620)
T 4dg8_A 408 EQGRLR 413 (620)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999764
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4e-58 Score=511.81 Aligned_cols=422 Identities=22% Similarity=0.287 Sum_probs=335.4
Q ss_pred CCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCC
Q 010455 20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99 (510)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv 99 (510)
+....+|++..+...+ +...++.++|+++++++|+++|+++. +.. +.+||+||.++++++|++|++.|+
T Consensus 42 ~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv 110 (979)
T 3tsy_A 42 NNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGV 110 (979)
T ss_dssp ---CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCC
Confidence 3445566666543222 23579999999999999999999865 322 689999999999999999999999
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEE
Q 010455 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179 (510)
Q Consensus 100 ~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~ 179 (510)
++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+....... . ..++.
T Consensus 111 ~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~ 187 (979)
T 3tsy_A 111 NQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-VVIVC 187 (979)
T ss_dssp CTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-CEEEE
T ss_pred CCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-ceEEE
Confidence 99999999999999999999999999999999999999999999999999999999988766554432211 1 23344
Q ss_pred ecCCChhhhhHhhhcCceeeeHHHHHHcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh
Q 010455 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (510)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~ 256 (510)
+++.... ........+.++...... ........++++++|+|||||||.||+|+++|+++++.+.......
T Consensus 188 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 261 (979)
T 3tsy_A 188 IDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 261 (979)
T ss_dssp CCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSS
T ss_pred eCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhh
Confidence 4332110 001123445554433211 2233446789999999999999999999999999998877654322
Q ss_pred hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHh
Q 010455 257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334 (510)
Q Consensus 257 ~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 334 (510)
.. ...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.
T Consensus 262 ~~-~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----- 335 (979)
T 3tsy_A 262 NP-NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS----- 335 (979)
T ss_dssp SC-SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC-----
T ss_pred cc-cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC-----
Confidence 10 125788999999999999999965 7789999999999875 999999999999999999999999998752
Q ss_pred hccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeee
Q 010455 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQ 413 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~ 413 (510)
......++ ++||.+++||+++++++.+++.+.+ ++.+++
T Consensus 336 --------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~ 375 (979)
T 3tsy_A 336 --------------------------------SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375 (979)
T ss_dssp --------------------------------GGGGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred --------------------------------ccccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence 11111222 3899999999999999999999988 899999
Q ss_pred eccccccccceecccC----CCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhh
Q 010455 414 GYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV 489 (510)
Q Consensus 414 ~yG~tE~~~~~~~~~~----~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~ 489 (510)
.||+||++.+++.... ......+++|+|+++++++|+|.+++.+++.| +.|||+|+|++++.|||++|+.+.+.
T Consensus 376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~ 453 (979)
T 3tsy_A 376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAET 453 (979)
T ss_dssp CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhh
Confidence 9999999977654321 12234588999999999999995557777666 89999999999999999999999999
Q ss_pred h-ccCccccCCe-eeccCCccC
Q 010455 490 I-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 490 ~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
| .+|||+|||+ ++|+||.+.
T Consensus 454 f~~~g~~~TGDl~~~~~dG~l~ 475 (979)
T 3tsy_A 454 IDKDGWLHTGDIGLIDDDDELF 475 (979)
T ss_dssp BCTTSCEEEEEEEEECTTSCEE
T ss_pred ccCCCcEEcCCEEEEcCCceEE
Confidence 9 8999999999 999999864
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.1e-58 Score=479.33 Aligned_cols=378 Identities=16% Similarity=0.133 Sum_probs=312.2
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|.+|++.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (510)
|+++|++++|+++.++.+++.++++.++++++|++++....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876543211 11 1 1122
Q ss_pred HHHHH---cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010455 202 EEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (510)
Q Consensus 202 ~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 278 (510)
.++.. ............++++++|+|||||||.||+|++||+++.+.+.+..... .......+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 22211 11112223345789999999999999999999999999998887765542 1267889999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455 279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (510)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
.++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..++..
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 255 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS------------------------- 255 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------------------------
Confidence 888778889999999998764 889999999999999999999999887531
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC--
Q 010455 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-- 431 (510)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~-- 431 (510)
......++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++..++......
T Consensus 256 ------------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 256 ------------DDFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp ------------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred ------------hccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 00111111 3899999999999999999998888 899999999999988766533221
Q ss_pred --CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh----ccCccccCCe-eecc
Q 010455 432 --FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI----VDGWFHTGKN-PWQY 504 (510)
Q Consensus 432 --~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~----~~gw~~TGDl-~~d~ 504 (510)
....+++|+|+|+++++|+| ++|.+++.| +.|||+|+||+++.|||++|+.+.+.| .+|||+|||+ ++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336899999999999999 888888776 899999999999999999999999998 3579999999 9999
Q ss_pred CCccC
Q 010455 505 TFKKL 509 (510)
Q Consensus 505 dG~~~ 509 (510)
||++.
T Consensus 393 dG~l~ 397 (521)
T 3l8c_A 393 DNILL 397 (521)
T ss_dssp SSCEE
T ss_pred CCeEE
Confidence 99764
No 23
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.4e-58 Score=480.68 Aligned_cols=376 Identities=18% Similarity=0.186 Sum_probs=311.0
Q ss_pred CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (510)
Q Consensus 44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~ 123 (510)
++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~ 72 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCV 72 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 7899999999999999999875 4 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (510)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (510)
++|++++|+++.++.+++.++++.++++++|++....... .. ..++.. ..+..
T Consensus 73 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~------------------~~~~~ 125 (512)
T 3fce_A 73 KAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSE------------------DNLKD 125 (512)
T ss_dssp HTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEET------------------HHHHH
T ss_pred HhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceech------------------hhhhh
Confidence 9999999999999999999999999999999975432110 00 011110 01122
Q ss_pred HHHcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455 204 FLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (510)
Q Consensus 204 ~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 281 (510)
+.... ..........++++++|+|||||||.||+|+++|+++.+.+.+....+ ++.++|++++.+|++|..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 200 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLSV 200 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGGH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHHH
Confidence 22111 111223345689999999999999999999999999999999888777 88999999999999999998
Q ss_pred HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..++..
T Consensus 201 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------- 252 (512)
T 3fce_A 201 MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME---------------------------- 252 (512)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS----------------------------
T ss_pred HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh----------------------------
Confidence 888899999999999874 899999999999999999999999887531
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC----C
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----F 432 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~----~ 432 (510)
......++ ++||.+++||+++++++.+++.+.+ ++.+++.||+||++..++...... .
T Consensus 253 ---------~~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 315 (512)
T 3fce_A 253 ---------ASFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQ 315 (512)
T ss_dssp ---------TTCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHH
T ss_pred ---------ccccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccc
Confidence 11111112 3899999999999999999999988 889999999999988766543322 1
Q ss_pred ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc----cCccccCCe-eeccCCc
Q 010455 433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGKN-PWQYTFK 507 (510)
Q Consensus 433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDl-~~d~dG~ 507 (510)
....++|+|+++++++|+| ++|.+++.| +.|||+|+||+++.|||++|+.+.+.|. +|||+|||+ ++ +||+
T Consensus 316 ~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~ 391 (512)
T 3fce_A 316 YKSLPVGYCKSDCRLLIMK-EDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391 (512)
T ss_dssp CSSCCCEEECTTCEEEEEC-SSSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTE
T ss_pred cCCCccccccCCcEEEEEC-CCCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCE
Confidence 2347899999999999999 888888776 8999999999999999999999999982 569999999 99 7887
Q ss_pred cC
Q 010455 508 KL 509 (510)
Q Consensus 508 ~~ 509 (510)
+.
T Consensus 392 l~ 393 (512)
T 3fce_A 392 LF 393 (512)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 24
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.9e-57 Score=476.50 Aligned_cols=373 Identities=19% Similarity=0.289 Sum_probs=308.4
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
..++.++|+++++++|+++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (510)
|+++|++++|+++.++.+++.++++.++++++|++.+....+.... ....+..+....
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------- 166 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------- 166 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence 9999999999999999999999999999999999887655442211 111222222110
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (510)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 281 (510)
+ .............++++++|+|||||||.||||++||+++.+.+..+...+ ++.++|++++.+|++|..++
T Consensus 167 --~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 238 (563)
T 1amu_A 167 --I-KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV 238 (563)
T ss_dssp --T-TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --h-ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence 0 000111112344678999999999999999999999999999888877766 78899999999999999998
Q ss_pred HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+..
T Consensus 239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------------------------- 289 (563)
T 1amu_A 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----------------------------- 289 (563)
T ss_dssp HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----------------------------
T ss_pred HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----------------------------
Confidence 878889999999998763 88999999999999999999999876531
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC--CccC
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FNMI 435 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~--~~~~ 435 (510)
. .+ .+||.+++||+++++++.+.+.+ ++.+++.||+||++.+++...... ....
T Consensus 290 --------~------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 345 (563)
T 1amu_A 290 --------E------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHS 345 (563)
T ss_dssp --------T------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred --------c------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCC
Confidence 0 01 38999999999999999999877 478999999999987666543322 2234
Q ss_pred CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-------cCccccCCe-eeccCCc
Q 010455 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGKN-PWQYTFK 507 (510)
Q Consensus 436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDl-~~d~dG~ 507 (510)
.++|+|+++++++|+| +++++++.| +.|||+|+|++++.|||++|+.|.++|. +|||+|||+ ++|+||+
T Consensus 346 ~~vG~p~~~~~v~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~ 422 (563)
T 1amu_A 346 VPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 422 (563)
T ss_dssp CCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred CcccceeCCCEEEEEC-CCcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCe
Confidence 7899999999999999 888887776 8999999999999999999999999983 259999999 9999998
Q ss_pred cC
Q 010455 508 KL 509 (510)
Q Consensus 508 ~~ 509 (510)
+.
T Consensus 423 l~ 424 (563)
T 1amu_A 423 IE 424 (563)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 25
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.1e-57 Score=473.71 Aligned_cols=375 Identities=18% Similarity=0.231 Sum_probs=314.9
Q ss_pred CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHHH
Q 010455 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEAC 122 (510)
Q Consensus 44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~~lA~ 122 (510)
++.++|+++++++|+++|+.+. + +++||+||.++++++|.+|++. |+++|++|+++++|++++++++|||
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~ 72 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGS 72 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHH
Confidence 7899999999999999999865 3 6899999999999999999885 8899999999999999999999999
Q ss_pred HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHH
Q 010455 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (510)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (510)
+++|++++|+++.++.+++.++++.++++++|++....... .. .. .....++
T Consensus 73 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~~----------------------~~~~~~~ 124 (511)
T 3e7w_A 73 VKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---QQ----------------------IQTVSAE 124 (511)
T ss_dssp HHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---CS----------------------SCEEEHH
T ss_pred HHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---cc----------------------cceecHh
Confidence 99999999999999999999999999999999976432110 00 00 1123445
Q ss_pred HHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455 203 EFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (510)
Q Consensus 203 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 281 (510)
++..... .........++++++|+|||||||.||+|++||+++.+.+.+....+ ++..+|++++.+|++|..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 199 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLSV 199 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHHH
Confidence 5544331 11222335678999999999999999999999999999999888777 78899999999999999998
Q ss_pred HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..++..
T Consensus 200 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------- 251 (511)
T 3e7w_A 200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD---------------------------- 251 (511)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS----------------------------
T ss_pred HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc----------------------------
Confidence 888899999999999764 899999999999999999999999987641
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC----C
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----F 432 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~----~ 432 (510)
+.....++ +++|.+++||+++++++.+++.+.+ ++.+++.||+||++..++...... .
T Consensus 252 ---------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 314 (511)
T 3e7w_A 252 ---------PGFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISR 314 (511)
T ss_dssp ---------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTT
T ss_pred ---------cccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccccccc
Confidence 11111112 3899999999999999999999988 899999999999988766533221 2
Q ss_pred ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--ccC--ccccCCe-eeccCCc
Q 010455 433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGKN-PWQYTFK 507 (510)
Q Consensus 433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDl-~~d~dG~ 507 (510)
....++|+|+|+++++|+| ++|++++.| +.|||+|+||+++.|||++|+.+.+.| .+| ||+|||+ ++ +||.
T Consensus 315 ~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~ 390 (511)
T 3e7w_A 315 SESLPVGFAKPDMNIFIMD-EEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQ 390 (511)
T ss_dssp CSSCCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTE
T ss_pred CCcCCCcceeCCCEEEEEC-CCCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCe
Confidence 2336799999999999999 888888776 899999999999999999999999999 344 8999999 99 4887
Q ss_pred cC
Q 010455 508 KL 509 (510)
Q Consensus 508 ~~ 509 (510)
+.
T Consensus 391 l~ 392 (511)
T 3e7w_A 391 IF 392 (511)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.2e-57 Score=480.39 Aligned_cols=393 Identities=18% Similarity=0.214 Sum_probs=314.5
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
....++.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 34689999999999999999999886 42 22378999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecCCC---CHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455 120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (510)
Q Consensus 120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 196 (510)
|||+++|++++|++|.. +.+++.++++.+++++++++.+....+.............+..
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 145 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA----------------- 145 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE-----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce-----------------
Confidence 99999999999999988 4578999999999999999877655443322111111111111
Q ss_pred eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 276 (510)
...+.+..............++++++|+|||||||.||||++||+++++.+.+....+ ++.++|++++++|++
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 146 --IALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp --EEGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred --eechhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 1111111111111223455789999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (510)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (510)
|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++.+..
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------ 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence 9999986 8889999999999763 789999999999999999999999988753211
Q ss_pred hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeeeeccccccccce
Q 010455 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSGC 424 (510)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~~yG~tE~~~~~ 424 (510)
...+..++ ++||.+++||+++++++.+++.+.++ ..+++.||+||++.++
T Consensus 281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 11111222 38999999999999999999998873 4699999999999877
Q ss_pred ecccCC--------------------------CCccCCccccccCCeEEEEeecCC-CCcCCCCCCCcceEEEecCCccc
Q 010455 425 FTSLAD--------------------------VFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFS 477 (510)
Q Consensus 425 ~~~~~~--------------------------~~~~~~svG~p~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g~~v~~ 477 (510)
+..... ......++|+|+++ ++|+| ++ +.+++.| +.|||+|+||+++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~~~~g--~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIPCDFD--QVGEIWVQSNSVAK 411 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCBCCTT--BCEEEEEESTTSCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcCCCCC--CEEEEEEeCCcccc
Confidence 754321 11223688999998 88899 55 6666665 89999999999999
Q ss_pred cccCCchhhhhhhcc-------C--ccccCCe-eeccCCccC
Q 010455 478 GYYKRPDLTEEVIVD-------G--WFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 478 gY~~~~~~~~~~~~~-------g--w~~TGDl-~~d~dG~~~ 509 (510)
|||++|+.+.++|.+ | ||+|||+ ++| ||.+.
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 999999999999943 5 9999999 999 88754
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.1e-56 Score=473.84 Aligned_cols=398 Identities=18% Similarity=0.209 Sum_probs=320.1
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 010455 32 KDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN 111 (510)
Q Consensus 32 ~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~n 111 (510)
+..++.......++.++|+++++++|+.+++.. ..+..+++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 345555667788999999999999999777642 22233789999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCeEEEecCCCC-------HHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCC
Q 010455 112 CPEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (510)
Q Consensus 112 s~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (510)
++++++++|||+++|++++|+++.++ .+++.++++.++++++|++++....+....... ....
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~--------- 153 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PELH--------- 153 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTCE---------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccce---------
Confidence 99999999999999999999999998 789999999999999999988766554433211 1111
Q ss_pred hhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhh-hhhccccC
Q 010455 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVC 263 (510)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~-~~~~~~~~ 263 (510)
.....................++++++|+|||||||.||+|+++|+++++.+..+... + ++
T Consensus 154 -------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~ 215 (576)
T 3gqw_A 154 -------------VLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----KL 215 (576)
T ss_dssp -------------EEEHHHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----CC
T ss_pred -------------ecchhhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----CC
Confidence 1111111111122223344568999999999999999999999999999988876544 4 78
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhcc
Q 010455 264 SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337 (510)
Q Consensus 264 ~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 337 (510)
.++|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+.+.
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------ 289 (576)
T 3gqw_A 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVN------ 289 (576)
T ss_dssp CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCC------
T ss_pred CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhc------
Confidence 89999999999999999875 6678999999988763 88999999999999999999999988754211
Q ss_pred ChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc------CCCe
Q 010455 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPL 411 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~------g~~l 411 (510)
....+..++ ++||.+++||+++++++.+++.+.+ +..+
T Consensus 290 ----------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 290 ----------------------------EKDLAELDL--------SCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp ----------------------------HHHHTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred ----------------------------ccccccCCh--------hhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 111111122 3899999999999999999999887 6789
Q ss_pred eeeccccccccceecccCCCC---------------------------ccCCccccccCCeEEEEeecCCCCcCCCCCCC
Q 010455 412 TQGYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVP 464 (510)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~ 464 (510)
++.||+||++.+++....... ....++|+|+|+++++|+| ++|++++.| +
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g--~ 410 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAER--V 410 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTT--B
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCC--C
Confidence 999999999987765432210 0113799999999999999 899888777 8
Q ss_pred cceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 465 RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 465 ~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
.|||+|+|++++.|||++++.+.+.+.+|||+|||+ ++ +||.+.
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~ 455 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLY 455 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEE
T ss_pred eEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEE
Confidence 999999999999999999998888779999999999 99 688764
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.5e-57 Score=473.58 Aligned_cols=393 Identities=17% Similarity=0.151 Sum_probs=312.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCcceeeeeccCC----CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (510)
Q Consensus 40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~ 115 (510)
.+..++.++|+++++++|+++|+++. ++ ..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45678999999999999999999876 32 12234789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (510)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 195 (510)
++++|||+++|++++|+++.++.+++.++++.++++++|++++....+. ......++... .
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~--~----------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK--N----------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT--C-----------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc--c-----------
Confidence 9999999999999999999999999999999999999999876543221 01111222111 0
Q ss_pred ceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhh---ccccCCCCcEEEEe
Q 010455 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV---TGKVCSEEDTYFSF 272 (510)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~---~~~~~~~~d~~~~~ 272 (510)
..+.+...............++++++|+|||||||.||||+++|+++.+.+..+...+.. ....+...+++++.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 112222222222222334457889999999999999999999999999988776554321 11257788999999
Q ss_pred cChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455 273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (510)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (510)
.|+.|..++..++.++..|+++++.+. .+..+++.++++++|++.++|++++.+..
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---------------------- 288 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---------------------- 288 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence 999998888878889999999998764 46788999999999999999998876421
Q ss_pred hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC
Q 010455 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430 (510)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~ 430 (510)
.+ .++ ++||.+++||+++++++.+++++.+++.+++.||+||++..++.....
T Consensus 289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 341 (562)
T 3ite_A 289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRIL 341 (562)
T ss_dssp ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECC
T ss_pred ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeec
Confidence 00 011 389999999999999999999988899999999999998877765554
Q ss_pred CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccC--ccccCCe-eeccCCc
Q 010455 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTGKN-PWQYTFK 507 (510)
Q Consensus 431 ~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g--w~~TGDl-~~d~dG~ 507 (510)
.....+++|+|+++++++|+|.+++.+++.| +.|||+|+|++++.|||++|+.+...+.+| ||+|||+ ++|+||+
T Consensus 342 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~ 419 (562)
T 3ite_A 342 PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSS 419 (562)
T ss_dssp TTSCTTEEEEECTTCEEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSC
T ss_pred CCCCCccccccCCCCeEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCe
Confidence 4444588999999999999994445556555 899999999999999999999988776666 9999999 9999998
Q ss_pred cC
Q 010455 508 KL 509 (510)
Q Consensus 508 ~~ 509 (510)
+.
T Consensus 420 l~ 421 (562)
T 3ite_A 420 IL 421 (562)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.9e-57 Score=468.39 Aligned_cols=374 Identities=24% Similarity=0.325 Sum_probs=302.7
Q ss_pred CCCCHHHHHHHHHhhCCC-CcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455 41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (510)
Q Consensus 41 ~~~sl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~ 119 (510)
++.++.++|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467888999999999887 9999865 3 68999999999999998774 4899999999999999999
Q ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (510)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 199 (510)
|||+++|++++|++|.++.+++.+++++++++++|++..... ......+..+ .....
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~---------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR---------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence 999999999999999999999999999999999999865211 0001111111 11100
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 279 (510)
...........++++++++|||||||.||||+++|+++.+.+..+...+ ++..+|++++.+|++|..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 209 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHVH 209 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSHH
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHHH
Confidence 0111122345678999999999999999999999999999999988887 888999999999999999
Q ss_pred HHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+..
T Consensus 210 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~------------------------- 263 (505)
T 3nyq_A 210 GLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPA------------------------- 263 (505)
T ss_dssp HHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG-------------------------
T ss_pred HHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc-------------------------
Confidence 9874 7889999999998875 899999999 88999999999999998763211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCc
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 437 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s 437 (510)
.+ ....+++ ++|.+++||++++.++.+++.+.+|+++++.||+||++..++...... ...++
T Consensus 264 --------~~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~ 325 (505)
T 3nyq_A 264 --------DP-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAGT 325 (505)
T ss_dssp --------CH-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTTC
T ss_pred --------Cc-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCCC
Confidence 11 1122333 899999999999999999999989999999999999987766544433 33489
Q ss_pred cccccCCeEEEEeecCCCCcCCC-CCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455 438 VGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 438 vG~p~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~ 509 (510)
+|+|+++++++|+| +++++++. ..++.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus 326 vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~ 399 (505)
T 3nyq_A 326 VGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR 399 (505)
T ss_dssp CCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEE
T ss_pred cccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEE
Confidence 99999999999999 88887775 335899999999999999999999999999 7999999999 999999764
No 30
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.2e-57 Score=466.38 Aligned_cols=386 Identities=20% Similarity=0.277 Sum_probs=303.9
Q ss_pred CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (510)
Q Consensus 44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~ 123 (510)
|+.++|+++++++|+++|+++. + +++||+||.++++++|.+|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678999999999999999865 3 5899999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCcee-eeHH
Q 010455 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE 202 (510)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (510)
++|++++|+++.++.+++.++++.++++++|++.+........... ..+..+.......... ........ ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc---ccccccccccchh
Confidence 9999999999999999999999999999999998765433221110 1111110000000000 00000000 0001
Q ss_pred HHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455 203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (510)
Q Consensus 203 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 281 (510)
...... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 111101 001122345689999999999999999999999999999999888777 88899999999999999999
Q ss_pred HHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCC
Q 010455 282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360 (510)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (510)
..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 270 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL----------------------------- 270 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------
Confidence 888889999999999875 99999999999999999999999999875210
Q ss_pred CCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC-CCccCCccc
Q 010455 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-VFNMIGTVG 439 (510)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~-~~~~~~svG 439 (510)
.. ..+||.+++||+++++++.+++.+ +++++++.||+||++..++..... .....+++|
T Consensus 271 --------~~-----------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 271 --------HE-----------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------CS-----------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------CC-----------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 00 017999999999999999999987 499999999999998755443322 223447899
Q ss_pred cccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 440 ~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
+|+++++++|+| ++ +++.|||+|+|++++.||+++++.+.+ |.+|||+|||+ ++|+||++.
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~ 392 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVM 392 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEE
Confidence 999999999999 54 236899999999999999999999887 88999999999 999999864
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=7.8e-54 Score=488.86 Aligned_cols=377 Identities=17% Similarity=0.234 Sum_probs=314.2
Q ss_pred CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (510)
Q Consensus 42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA 121 (510)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999865 4 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (510)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (510)
|+++|++++||+|.++.+++.++++.++++++|++.+....+.. .......+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc-----------------
Confidence 99999999999999999999999999999999998765443211 11122333332210
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (510)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 281 (510)
. .. ...........++++++++|||||||.||||+++|+++.+. .+....+ .+.++|+++...|++|..+.
T Consensus 592 -~-~~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 662 (1304)
T 2vsq_A 592 -R-FE-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT 662 (1304)
T ss_dssp -G-GG-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred -c-cc-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence 0 00 01111223456899999999999999999999999999876 4444444 78899999999999998888
Q ss_pred HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (510)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
..++.+|..|+++++.+. ++..+++.++++++|+++++|++++.+.+..
T Consensus 663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------------- 715 (1304)
T 2vsq_A 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--------------------------- 715 (1304)
T ss_dssp HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---------------------------
Confidence 788999999999999863 8999999999999999999999999886410
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCC---Cc
Q 010455 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV---FN 433 (510)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~---~~ 433 (510)
...++ +||.+++||++++.++.+.+.+.++ +.++|.||+||++..++...... ..
T Consensus 716 -------------~~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 774 (1304)
T 2vsq_A 716 -------------EDWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774 (1304)
T ss_dssp -------------SHHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSC
T ss_pred -------------hhcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccC
Confidence 00122 8999999999999999998887774 78999999999998776544322 22
Q ss_pred cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c------cCccccCCe-eeccC
Q 010455 434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V------DGWFHTGKN-PWQYT 505 (510)
Q Consensus 434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------~gw~~TGDl-~~d~d 505 (510)
...++|+|++|++++|+| +++++++.| +.|||+|+|+++++||+|+|+.|.++| . ++||+|||+ ++++|
T Consensus 775 ~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d 851 (1304)
T 2vsq_A 775 SSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD 851 (1304)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred CCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence 336899999999999999 888888877 899999999999999999999999999 3 349999999 99999
Q ss_pred CccC
Q 010455 506 FKKL 509 (510)
Q Consensus 506 G~~~ 509 (510)
|.+.
T Consensus 852 G~l~ 855 (1304)
T 2vsq_A 852 GTIE 855 (1304)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 9764
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.8e-34 Score=282.31 Aligned_cols=209 Identities=16% Similarity=0.156 Sum_probs=176.8
Q ss_pred CCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeC
Q 010455 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (510)
Q Consensus 219 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (510)
.+++++|+|||||||.||||++||+++.+.+..+...+ +++++|++++.+|++|.+|+..++.+++.|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47889999999999999999999999999999988888 8899999999999999999988888999999999876
Q ss_pred CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHH
Q 010455 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 378 (510)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (510)
. ....++.++++++|++.++|+++..+++... ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 4 2344677899999999999999999875210 01122
Q ss_pred HHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcC
Q 010455 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458 (510)
Q Consensus 379 ~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~ 458 (510)
++||.+++||+++++++.+++++. |+++++.||+||++..++....+.... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 289999999999999999999874 999999999999998877766554443 8899999999888744
Q ss_pred CCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL 509 (510)
Q Consensus 459 ~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~ 509 (510)
.|||+++|+.+ .+|||+|||+ ++|+||..+
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g~~~ 245 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNAFQW 245 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSEEEE
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCceEE
Confidence 59999998632 3789999999 999999543
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.98 E-value=1.2e-31 Score=272.52 Aligned_cols=229 Identities=13% Similarity=0.045 Sum_probs=182.0
Q ss_pred CCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCcE
Q 010455 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS 293 (510)
Q Consensus 216 ~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~l~~l~~G~~ 293 (510)
...+ +++++++|||||||.||+|+++|+++.+.+..+...+.. .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3445 889999999999999999999999998877665443211 2678999999999987655554 57788999999
Q ss_pred EEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHH
Q 010455 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (510)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (510)
+++.+. ++..+++.++++++|+++++|+++..|++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 998764 99999999999999999999999999987543221100
Q ss_pred HHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeec
Q 010455 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452 (510)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~ 452 (510)
++ ++||.+++||+++++++.+++++.+|+.+++.||+||+++.++...... . ..+|.|.+++.++|+|.
T Consensus 204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence 01 3899999999999999999999999999999999999965432222211 1 33677888999999995
Q ss_pred CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCC
Q 010455 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTF 506 (510)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG 506 (510)
+++.+++.| +.|||+|+|. +.+.|.++||+|||+ ++|+||
T Consensus 273 ~~g~~~~~g--~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 273 ETGEPVPEG--EIGELVLTTL------------DREMMPLIRYRTRDLTRILPGK 313 (436)
T ss_dssp TTCSBCSTT--CCEEEEEEES------------SCCSSCCCSEEEEEEECEECSC
T ss_pred CCCCCCCCC--CceEEEEecc------------CcCCceEEEEEcCCEEEEcCCC
Confidence 677777766 8999999984 233456899999999 999998
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=4.6e-31 Score=268.30 Aligned_cols=231 Identities=16% Similarity=0.078 Sum_probs=182.1
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCcEE
Q 010455 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (510)
Q Consensus 216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~l~~l~~G~~~ 294 (510)
...++++++++|||||||.||+|+++|+++...+..+...+.. .++..+|+++..+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4467899999999999999999999999998877654432211 267899999999998 6788777788899999999
Q ss_pred EEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHH
Q 010455 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373 (510)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (510)
++.+. ++..+++.++++++|+++++|+++..|++........ . +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------------------~---~ 208 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD--------------------------------P---V 208 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------------------G---G
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC--------------------------------c---c
Confidence 87765 9999999999999999999999999987644321000 0 0
Q ss_pred HHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccc-eecccCCCCccCCccccccCCeEEEEeec
Q 010455 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESV 452 (510)
Q Consensus 374 ~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~-~~~~~~~~~~~~~svG~p~~g~~i~ivd~ 452 (510)
+ ++||.+++||+++++++.+++++.+|+++++.||+||+++. +........ ..++.|.+++.++|+|.
T Consensus 209 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~ 277 (437)
T 2y27_A 209 Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIIDP 277 (437)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEECT
T ss_pred c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEcC
Confidence 1 38999999999999999999998889999999999998433 333222111 12566789999999994
Q ss_pred CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eecc-CCcc
Q 010455 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQY-TFKK 508 (510)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~-dG~~ 508 (510)
+++.+++.| +.|||+|+|. +.+.|.++||+|||+ ++|+ ||+.
T Consensus 278 ~~g~~~~~g--~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~ 321 (437)
T 2y27_A 278 ETGEVLPDG--ELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTART 321 (437)
T ss_dssp TTCCBCCTT--CCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSS
T ss_pred CCCCCCCCC--CccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCC
Confidence 457777765 8999999983 234456899999999 9999 6974
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=5.7e-31 Score=268.05 Aligned_cols=246 Identities=13% Similarity=0.061 Sum_probs=187.2
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HH
Q 010455 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AH 277 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h 277 (510)
...+++.... +.......++++++++|||||||.||+|.++|+++......+...+.. .++..+|+++..+|+ +|
T Consensus 73 ~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 73 STKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp BCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSS
T ss_pred CcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCccc
Confidence 3455554432 112234467889999999999999999999999998876655442211 267899999999998 57
Q ss_pred HHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455 278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (510)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (510)
..++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------- 208 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------------------- 208 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------------------
Confidence 7777777889999999988765 9999999999999999999999999987643321000
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccc-eecccCCCCccC
Q 010455 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI 435 (510)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~-~~~~~~~~~~~~ 435 (510)
. ++ ++||.+++||+++++++.+++++.+|+++++.||+||+++. +........
T Consensus 209 ------------~---~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~--- 262 (443)
T 2y4o_A 209 ------------P---AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK--- 262 (443)
T ss_dssp ------------G---GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---
T ss_pred ------------c---cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---
Confidence 0 01 38999999999999999999999889999999999998443 333222111
Q ss_pred CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccC-Ccc
Q 010455 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT-FKK 508 (510)
Q Consensus 436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d-G~~ 508 (510)
..++.|.+++.++|+|.+++++++.| +.|||+|+|. +.+.|.++||+|||+ ++|+| |+.
T Consensus 263 ~g~~~~~~~~~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~ 323 (443)
T 2y4o_A 263 DGPVIWEDHFYPEIIDPVTGEVLPDG--SQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARA 323 (443)
T ss_dssp CSEEECTTTEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSS
T ss_pred CceEEccCCeEEEEEcCCCCCCCCCC--CceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCC
Confidence 12566778999999994457777765 8999999983 233456889999999 99999 974
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=1.2e-29 Score=251.97 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=176.8
Q ss_pred CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCcEEE
Q 010455 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (510)
Q Consensus 217 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~l~~l~~G~~~v 295 (510)
..++++++++|||||||.||+|.++|+++...+.++...+. ..++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 36788999999999999999999999999998885543321 1267899999999999 99999988777899999444
Q ss_pred EeCCCHh-----------------------hHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455 296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352 (510)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
....++. .+++.++++++|++.++|+++..|++.
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~----------------------- 222 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR----------------------- 222 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-----------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-----------------------
Confidence 3334666 888899999999999999999998752
Q ss_pred hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHH-Hhc-CCCeeeeccccccccceecccCC
Q 010455 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD 430 (510)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~-~~~-g~~l~~~yG~tE~~~~~~~~~~~ 430 (510)
+.....+++ +||.+++||+++++++.++++ +.| ++.+++.||+||+++++.....
T Consensus 223 --------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 223 --------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 222223344 899999999999999999999 888 8999999999998876532211
Q ss_pred CCccCCccccc------cCCeEEEEeecCCCCcCCCCCCCcceEEEecC---CccccccCCchhhhhhhccCccccCCe
Q 010455 431 VFNMIGTVGVP------MTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGKN 500 (510)
Q Consensus 431 ~~~~~~svG~p------~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGDl 500 (510)
.++|+| +|+++++|+|.+++++++.| +.|||+|++. .++.+|...+........+||+.+|+.
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G--~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~ 351 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVDSITAQTVEYG--ERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLA 351 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTT--CEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEECCCCCcCCCCC--CceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccc
Confidence 248999 99999999993388877766 9999999973 336667665554444446777777643
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.09 E-value=0.037 Score=56.55 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 010455 217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (510)
Q Consensus 217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 248 (510)
..++.+.++.-||||| |.+|-+.+|...+-..
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 3456677899999999 7799999999987654
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=94.62 E-value=0.39 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 010455 217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (510)
Q Consensus 217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 248 (510)
..++.+..+.-||||| |.||.+.+|...+-..
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 3566778899999999 7899999999987663
No 39
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.99 E-value=1.8 Score=42.68 Aligned_cols=126 Identities=16% Similarity=0.046 Sum_probs=90.0
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~ 131 (510)
.++.++.+... .|..|.+ ..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34555543331 5555544 3579999998888888888888999999999988863 3445567888899999888
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 010455 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (510)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~ 184 (510)
+++. ..+.+...++..++.+++........+.+...+ ....++.++.-++.-
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 224 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW 224 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence 7764 788888999999999999887766655443211 124667777665543
No 40
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.97 E-value=1 Score=44.43 Aligned_cols=124 Identities=11% Similarity=-0.023 Sum_probs=90.2
Q ss_pred CCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEEec
Q 010455 58 NNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLY 133 (510)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~l~ 133 (510)
+.++++.. ..|..|.+ ..+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44554433 14444433 4679999999999998888889999999999988753 444556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 010455 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (510)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~ 184 (510)
+. .++.+...++..++.+++........+.+.... .+..++.++.-++.-
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 218 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH 218 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence 54 678888999999999999888766665543211 135677777766553
No 41
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.68 E-value=1.4 Score=43.54 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=89.1
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~ 131 (510)
.++.++.+.. ..|..|.+ ..+|++.+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456664433 14444533 4679999998888888888888999999999988853 3445567888999999987
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010455 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (510)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~ 183 (510)
++.. +.+.+...++..++.+++........+.+...+ ....++.++.-+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 7654 788899999999999999887766655443211 12456666665554
No 42
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.94 E-value=9.8 Score=37.98 Aligned_cols=122 Identities=12% Similarity=0.023 Sum_probs=86.5
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hHHHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~-~~~~~~lA~~~~G~~~v~l 132 (510)
.|+.+|++... .|..|.+ ..+|++.+...+..+.. ..++.++|++...+|-.- ..+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777765541 4444433 46799998877766554 358899999999888643 2344567888899988877
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCC
Q 010455 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (510)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (510)
+. .+++.+...++..++..++........+.+........++.++.-++.
T Consensus 236 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 DK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp SS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred CC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 64 678899999999999999998887776665544333466776665554
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.39 E-value=21 Score=36.04 Aligned_cols=123 Identities=7% Similarity=-0.126 Sum_probs=84.8
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCeEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--II-AMEACNSQAITYV 130 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~-~~lA~~~~G~~~v 130 (510)
.|+.+|++... .|..|.+ ..+|++.+...+...... .++.++|++...+|-+-.+ .. .+++.+..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46677765541 3444432 468999988777665543 3788999998888865333 22 4788899999888
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC---ccCCCCccEEEEecCCC
Q 010455 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANVS 184 (510)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~ 184 (510)
..+ ...++.+...++..++.+++........+.+.. ...+..++.++.-+..-
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l 310 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKF 310 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCC
Confidence 765 467888999999999999998877666554332 23446677777666543
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=82.32 E-value=5.7 Score=37.88 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=69.7
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~ 131 (510)
.++.++.+... .|..|.+ ..+|.+.+...+..++..+...|+.++|++..+++-. .--+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 34555654431 4555544 3579999988888777777778999999999998863 2234445556889995555
Q ss_pred ecCCCCHH-----------------------HHHHHHHhcCccEEEEcCCChhhHh
Q 010455 132 LYDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSIL 164 (510)
Q Consensus 132 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~ 164 (510)
.. ..+. .+...++..++.+++........+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 33 3344 6666888999999998776655543
No 45
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=81.27 E-value=10 Score=38.54 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=82.5
Q ss_pred CCcceeeeeccCCCCCC--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEEec
Q 010455 58 NNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVPLY 133 (510)
Q Consensus 58 ~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~l~ 133 (510)
+.+|++... .|..|. -..+|++.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 666765441 344443 24689999887766655443335888999998888865332 33456777 999888775
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010455 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (510)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 183 (510)
...++.+...++..++.+++........+.+... ..+..++.++.-+..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 4678899999999999999998877666654321 133566666665544
No 46
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=77.04 E-value=24 Score=35.32 Aligned_cols=121 Identities=14% Similarity=0.022 Sum_probs=79.3
Q ss_pred CCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEEe
Q 010455 57 PNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVPL 132 (510)
Q Consensus 57 p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~l 132 (510)
|+.+|++... .|..|.+ ..+|++.+...+..++.. .++.++|++...+|-.-.. ...+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 4566654441 4544443 468999998877766554 4889999999988865433 22345555 88888766
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC---ccCCCCccEEEEecCCC
Q 010455 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANVS 184 (510)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~ 184 (510)
+ ...+..+...++..++..+.........+.+.. ...+..++.++.-+..-
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l 296 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 296 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCC
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCC
Confidence 4 568889999999999999998877666554321 12335667666655543
No 47
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=76.29 E-value=16 Score=37.77 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=87.3
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~-~~~~lA~~~~G~~~v~l 132 (510)
.|+.+|++... .|..|.+ ..+|++.+...+.. ....++.++|++...++-+-+. +..++..+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46777765441 4555543 36788887543322 2234789999999998876443 44578888899888776
Q ss_pred c-CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCCh
Q 010455 133 Y-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (510)
Q Consensus 133 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (510)
+ ....++.+...++..++..++........+.+.....+..++.++.-++.-.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCC
Confidence 4 3567889999999999999998887777666555555677888888776543
No 48
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=75.47 E-value=21 Score=35.61 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=81.8
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~-~~~~~lA~~~~G~~~v~l 132 (510)
.++.+|++... .|..|.+ ..+|++.+...+..... ..++.++|++...+|-+-. .+..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 35666654441 4444433 46799988876655544 4588999999999886533 345678889999998888
Q ss_pred cCC--CCHHHHHHHHHhcCccEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010455 133 YDT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (510)
Q Consensus 133 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 183 (510)
++. ..+..+...++..++.+++........+.... ...+..++.++.-+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 763 46788889999999999998876665543322 2233556666665554
No 49
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=75.11 E-value=31 Score=34.34 Aligned_cols=123 Identities=8% Similarity=-0.060 Sum_probs=83.8
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~-~~~~~lA~~~~G~~~v~l 132 (510)
.++.+|++... .|..|.+ ..+|++.+...+..++. ..++.++|++...+|-+-. .+..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35566655441 4555544 36799998877665544 3578899999998886543 345578889999998877
Q ss_pred cCC--CCHHHHHHHHHhcCccEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010455 133 YDT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (510)
Q Consensus 133 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 183 (510)
+.. ..+..+...++..++.+++........+.... ...+..++.++.-+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 653 46778889999999999998877666554432 2233456666665544
No 50
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=74.38 E-value=13 Score=37.80 Aligned_cols=124 Identities=8% Similarity=0.003 Sum_probs=87.7
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hHHHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~-~~~~~~lA~~~~G~~~v~l 132 (510)
.|+.+|++... .|..|.+ ..+|++.+...... ....++.++|++...+|-+- -....+++.+..|+.++..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46677765541 3444432 46899887543321 22347889999999888753 3455678888999988877
Q ss_pred cC-CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCCh
Q 010455 133 YD-TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (510)
Q Consensus 133 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (510)
.. ...+..+...++..++.++.........+.+.....+..++.++.-+..-.
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPAS 339 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCC
Confidence 64 467889999999999999999888777777666666677888877766543
No 51
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=73.68 E-value=50 Score=32.81 Aligned_cols=120 Identities=8% Similarity=-0.042 Sum_probs=77.1
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~ 131 (510)
.|+.+|++... .|..|.+ ..+|.+.+...+..+.. ..++.++|++...+|-.-.+ ...+++++..|+.+++
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 45666654431 4555544 46799999877766654 34889999999988865332 2333344555555444
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC-ccCCCCccEEEEecC
Q 010455 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL-PRCCLYLKTIVSFAN 182 (510)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~v~~~~~ 182 (510)
. ...++.+...++..++.+++........+.+.. ...+..++.++..+.
T Consensus 233 -~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 233 -A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT 282 (509)
T ss_dssp -S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECC
T ss_pred -c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCC
Confidence 3 678899999999999999998888777665432 233355566655443
No 52
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=73.31 E-value=21 Score=36.08 Aligned_cols=122 Identities=11% Similarity=-0.050 Sum_probs=81.9
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH---HHHHHHhcCCeEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYV 130 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~---~~lA~~~~G~~~v 130 (510)
.++.+|++... .|..|.+ ..+|++.+...+..++.. .++.++|++...+|..-.+-. .+++.+..|+..+
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35667765441 3444432 468999998877766554 488999999998886544322 4788888999887
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010455 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (510)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 183 (510)
..+. ..+..+...++..++..+.........+.+... ..+..++.++.-+..
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 7654 578888899999999999988766655443321 223456666665554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=72.63 E-value=24 Score=35.87 Aligned_cols=124 Identities=10% Similarity=-0.119 Sum_probs=84.3
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~ 131 (510)
.|+.+|++... .|..|.+ ..+|++.+...+..+.. ..++.++|++...+|-.-.+ ...+++.+..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46677765541 4444433 46899999887776655 45889999999998876544 3347888999999888
Q ss_pred ecCCC---CHHHHHHHHHhcCccEEEEcCCChhhHhhcC------ccCCCCccEEEEecCCC
Q 010455 132 LYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCL------PRCCLYLKTIVSFANVS 184 (510)
Q Consensus 132 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~ 184 (510)
+.+.. .+..+...++..++.++.........+.+.. ...+..++.++.-+..-
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l 301 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCC
Confidence 77642 5677888899999999888765554443321 12335666776655543
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.12 E-value=43 Score=34.37 Aligned_cols=123 Identities=14% Similarity=-0.017 Sum_probs=83.6
Q ss_pred CCCcceeeeeccCCCCCC--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCeEEE
Q 010455 57 PNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--II-AMEACNSQAITYVP 131 (510)
Q Consensus 57 p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~-~~lA~~~~G~~~v~ 131 (510)
|+.+|++... .|..|. -..+|++.+...+......+ ++.++|++...++.+..+ .. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5667765441 444443 34689999887776665544 788999999988855433 32 47788888988877
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC-----ccCCCCccEEEEecCCCh
Q 010455 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSS 185 (510)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~ 185 (510)
.+. .....+...++..++.++.........+.+.. ...+..++.++.-++.-.
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLS 315 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCC
Confidence 654 56778888999999999998877665554322 123456777777666543
No 55
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=69.49 E-value=22 Score=33.43 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 93 AMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 93 ~L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
.+.+.| +++|++|.+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 489998755556566777788888888998877777665566677788999999999754
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=68.75 E-value=55 Score=32.89 Aligned_cols=107 Identities=7% Similarity=-0.119 Sum_probs=78.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.+|++....+..+ -..-.+|.+.+...+..++..+.. .++.++|++...++-..- -...+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 3677777655322111 112468999999888888776633 378899999998887542 234578899999999887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (510)
.. ....+...++..++++++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 78899999999999999999887766543
No 57
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=67.02 E-value=58 Score=32.70 Aligned_cols=101 Identities=5% Similarity=-0.152 Sum_probs=75.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.++++....+ ..-.+|.+.+...+..++..+.. .++.++|++...++-.. -.....++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEec
Confidence 3566666543211 24578999999888887776633 37889999999888664 2234578899999999887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (510)
.. ....+...++..++.+++..+.+...+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 65 788899999999999999988876554
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=66.65 E-value=35 Score=34.23 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.++++.. .+| -.+|.+.+...+..++..+.. .++.++|++...+|-..- ....+++++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 4677776542 222 368999999988888776643 378899999998887642 344578899999998887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (510)
.. ....+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 88899999999999999998887766544
No 59
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.64 E-value=40 Score=34.20 Aligned_cols=124 Identities=6% Similarity=-0.106 Sum_probs=81.2
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~ 131 (510)
.|+.+|++... .|..|.+ ..+|++ +....... .....++.++|++...++.+-.+ ...+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35666765441 4444433 467888 44321111 12445889999998888866443 3356788888988887
Q ss_pred ecC-CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC--ccCCCCccEEEEecCCC
Q 010455 132 LYD-TLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVS 184 (510)
Q Consensus 132 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~ 184 (510)
... ...+..+...++..++..++........+.+.. ...+..++.++.-+..-
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESL 334 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcC
Confidence 764 678899999999999999999887776665432 11235677777766553
No 60
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=63.20 E-value=36 Score=32.09 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 89 RFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 89 ~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
.+.+...+--+++|.+..+.....-.-+.+.++|.++|..+..+-|...+..-...++..++++++++..
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3333333333688887777777777888888999999999888888777777778899999999999753
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=63.09 E-value=44 Score=34.58 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=83.4
Q ss_pred CCCcceeeeeccCCCCCCeE--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCeEEEe
Q 010455 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI--IAMEACNSQAITYVPL 132 (510)
Q Consensus 57 p~~~a~~~~~~~~~~~~~~~--~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~--~~~lA~~~~G~~~v~l 132 (510)
|+.++++... .|..|.++ .+|.+.+...+..... ...+++++|++....+-+-..- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 5666655441 45555444 5788877654432211 2357899999988887654432 4567889999999888
Q ss_pred cCC---CCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc-----cCCCCccEEEEecCCCh
Q 010455 133 YDT---LGANAVEFIINHAEVSIAFVQENKIPSILSCLP-----RCCLYLKTIVSFANVSS 185 (510)
Q Consensus 133 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~ 185 (510)
+.. ..+..+..+++..++.++++.......+.+... ..+..++.++.-++.-.
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 391 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 391 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCC
Confidence 752 467889999999999999998877666554322 23456777777666543
No 62
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=63.03 E-value=33 Score=34.59 Aligned_cols=123 Identities=10% Similarity=-0.063 Sum_probs=81.1
Q ss_pred CCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCeEEEecC
Q 010455 58 NNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYD 134 (510)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~-~~~~~lA~~~~G~~~v~l~~ 134 (510)
+.+|++... .|..|.+ ..+|++.+...+......+...++.+++++...+|-.-. .+...++.+..|+..+.+.
T Consensus 190 ~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 456654441 3444432 468999887776555444444578899999988886532 3455677788899888775
Q ss_pred CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010455 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (510)
Q Consensus 135 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 183 (510)
...++.+...++..++..++........+.+... ..+..++.++.-+..
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 4678889999999999999998777665544322 234566777666554
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=62.17 E-value=83 Score=30.71 Aligned_cols=107 Identities=9% Similarity=-0.025 Sum_probs=77.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.|+.+|++.........-....+|.+.+...+..++..+... +. ++|++...++-..- -....++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 467778766542211112346899999999999888877432 43 78999888776642 234578899999998877
Q ss_pred CC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHH
Q 010455 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (510)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (510)
.. ....+...++..++.+++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788889999999999999887766543
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=61.36 E-value=73 Score=31.53 Aligned_cols=99 Identities=16% Similarity=0.029 Sum_probs=72.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.++++.. . .+..+|.+.+...+..++..+.. .++.++|++...++-..-+ ...+++++..|+..+..
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEec
Confidence 4566776542 1 12578999999988888776633 3678999999988866432 44578899999999887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEe--ccHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSG--VPRVYDRI 326 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~--~P~~~~~l 326 (510)
.. .+..+...++..+++.++. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 65 7888999999999999988 66554443
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=61.19 E-value=64 Score=33.42 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=74.8
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.+|++.... .+| ....+|.+.+...+..++..+.. ..++.++|++...+|..-- ....+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 467778765422 122 23578999999988888877630 1278899999999987643 344678899999998876
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (510)
.. .+..+...++..++.++++....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 54 88999999999999999987654
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.38 E-value=76 Score=32.02 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=72.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.+|++. . .-.+|.+.+...+..++..+.. .++.++|++...++-.. -.....++++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 456777653 1 2368999998888887776533 37889999998888664 2234578899999998887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDR 325 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~ 325 (510)
.. ....+...++..++.+++..+.+...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 65 78889999999999999988866543
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=60.15 E-value=48 Score=33.69 Aligned_cols=124 Identities=9% Similarity=-0.174 Sum_probs=80.1
Q ss_pred CCCCcceeeeeccCCCCCCeE--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~ 131 (510)
.|+.+|++... .|..|.++ .+|...+...+. ......++.+++++....+..... +..+++.+..|+.++.
T Consensus 223 ~~~d~a~i~~T--SGTTG~PKgV~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYFS--SGTAGFPKMVEHDNTYPLGHIL---TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEETTHHHHHHH---HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEEe--CCCCCCccEEEeccHHHHHHHH---HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 45666755441 55556544 456554433222 222235888999988887765443 3347888999999888
Q ss_pred ec-CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc--cCCCCccEEEEecCCC
Q 010455 132 LY-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFANVS 184 (510)
Q Consensus 132 l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~ 184 (510)
.+ ....++.+...++..++..++........+..... ..+..++.++.-++.-
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l 353 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPL 353 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCC
Confidence 76 56788899999999999999988776665544321 1235667776666553
No 68
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=59.12 E-value=32 Score=32.51 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=77.9
Q ss_pred HHHHHHHHhhCCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hHHHHHHHH
Q 010455 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEAC 122 (510)
Q Consensus 46 ~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~-~~~~~~lA~ 122 (510)
.+.+.++ +.|.+|++... .|..|.+ ..+|++.+...+..++.. .+++++|++...+|-+- ..+..++..
T Consensus 28 ~~~~~~w---~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~ 99 (358)
T 4gs5_A 28 YDFMEKW---LGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRG 99 (358)
T ss_dssp HHHHHHH---HHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred hhHhhcc---CCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHH
Confidence 3444444 45666765431 4555554 468999998777665543 48899999998888653 234455666
Q ss_pred HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc--cCCCCccEEEEecCC
Q 010455 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFANV 183 (510)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 183 (510)
+..|+..+...+.... ...++..++..+.........+.+... ..+..++.++.-+..
T Consensus 100 l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 100 MELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp HHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred HHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 7778777777664332 345677888888887766555543322 223455556555443
No 69
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=55.67 E-value=76 Score=31.45 Aligned_cols=103 Identities=9% Similarity=-0.041 Sum_probs=71.5
Q ss_pred CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCeEEE
Q 010455 56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVP 131 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~--~~~~~lA~~~~G~~~v~ 131 (510)
.|+.+|++... .|..|.+ ..+|++.+...+..++..+ ++.++|++...++..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45667765441 4555543 4689999988887776655 78899998888875432 23457888899998877
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhh
Q 010455 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165 (510)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 165 (510)
.. ....+.+...+ ..++..++........+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 45667777777 6788888887766655544
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.62 E-value=74 Score=31.50 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=67.8
Q ss_pred EeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEE
Q 010455 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (510)
Q Consensus 239 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~ 316 (510)
.+|.+.+...+..++..+.. .++.++|++...++-.. -....+++++..|+..+.... ....+...++..++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 68999999988888776633 37889999999888764 224457889999999888765 78889999999999999
Q ss_pred EeccHHHHHH
Q 010455 317 SGVPRVYDRI 326 (510)
Q Consensus 317 ~~~P~~~~~l 326 (510)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765443
No 71
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=51.31 E-value=68 Score=31.21 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=48.4
Q ss_pred HhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcC
Q 010455 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 95 ~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47886655556667777778888999999988777766666777788999999999974
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.13 E-value=68 Score=31.95 Aligned_cols=98 Identities=4% Similarity=-0.126 Sum_probs=74.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.++++.. | ..+|...+...+..++..+.. .++.++|++...++-..- .....++++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEec
Confidence 4566776532 1 368999999888887776633 367889999998876542 234578899999998877
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (510)
.. .+..+...++..++.+++..+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 65 7889999999999999999888766543
No 73
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=49.99 E-value=43 Score=38.05 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=84.1
Q ss_pred CCCCcceeeeeccCCCCCCeE--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCeEEEe
Q 010455 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (510)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~-~~~~lA~~~~G~~~v~l 132 (510)
.|+.+|++... .|..|.++ .+|.+.+... .......++.++|++....+-+-+. +.-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46777765441 45555443 6799887642 1122234888999998888876554 44577888899988887
Q ss_pred cC--CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCC
Q 010455 133 YD--TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (510)
Q Consensus 133 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (510)
++ ...+..+...++..++.+++........+.+........++.++.-++.-
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 76 35788999999999999999887776666543333335667777766654
No 74
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=47.55 E-value=95 Score=28.50 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=44.2
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|++|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 44455 467776655 44455555666777899998877766555555666788999999998753
No 75
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=47.40 E-value=29 Score=31.30 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCc
Q 010455 88 IRFGSAMRSRGVNPGDRCGIYGSNC 112 (510)
Q Consensus 88 ~~lA~~L~~~gv~~gd~Vai~~~ns 112 (510)
..+.+.|+++||++||+|.+..+-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567889999999999999998854
No 76
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=46.84 E-value=31 Score=35.11 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCCCCeEEEEecCCCC-CCCceEEeecHHHHH
Q 010455 217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (510)
Q Consensus 217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 247 (510)
..++.+..+.-||||| |.+|-+.+|...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3556677899999999 779999999998765
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=46.20 E-value=86 Score=34.23 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEe
Q 010455 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (510)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (510)
.++.++++... +| -.+|.+.+...+..++..+.. .++.++|++...+|-.. --+..+++++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 56777766422 22 468999999888887776633 37889999999988763 2334578899999999887
Q ss_pred CC--CHhhHHHHHhhhcCcEEEeccHHHHHH
Q 010455 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (510)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (510)
.. .+..+...++..++.+++..+.+...+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 65 888999999999999999988765544
No 78
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=45.09 E-value=53 Score=30.67 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=51.9
Q ss_pred EEeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEE
Q 010455 77 WLTYQEVYDAAIRFG---SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (510)
Q Consensus 77 ~~Ty~~l~~~v~~lA---~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (510)
.+++.+......... +.++..++++|++|+|...-+.-.+++.+|....|+.++.+..+ ++. ..+++..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 366766544333322 23455689999999999887777777777777778887777653 333 355667788877
Q ss_pred EEc
Q 010455 154 FVQ 156 (510)
Q Consensus 154 i~~ 156 (510)
|-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 79
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=43.91 E-value=1.1e+02 Score=28.08 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=43.5
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|++|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34455 467776655 44445556667777889998877666544455566778999999998753
No 80
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.76 E-value=90 Score=26.98 Aligned_cols=52 Identities=13% Similarity=-0.032 Sum_probs=35.9
Q ss_pred cEEEEecCh--HHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEe
Q 010455 267 DTYFSFLPL--AHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSG 318 (510)
Q Consensus 267 d~~~~~~pl--~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~ 318 (510)
.+++...+- .|..|... ...--..|..++.... ++..+.+.+.+++++++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444333 47777764 4445567777766543 8999999999999998777
No 81
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=42.71 E-value=1.4e+02 Score=27.13 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=44.0
Q ss_pred HHhCC-CCCCC--EEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGD--RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd--~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 56777 4444 44445556666778899998877766555556667788899999999865
No 82
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=41.65 E-value=1.3e+02 Score=29.75 Aligned_cols=81 Identities=9% Similarity=-0.057 Sum_probs=62.6
Q ss_pred EEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcE
Q 010455 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (510)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (510)
-.+|...+...+..++..+.. .++.++|++...++-.. --+...++++..|+..+.... .+..+...++..++++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 358999998888887776633 36788898888877654 223457889999999887654 7889999999999999
Q ss_pred EEeccH
Q 010455 316 FSGVPR 321 (510)
Q Consensus 316 ~~~~P~ 321 (510)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 83
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=41.23 E-value=43 Score=30.33 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCc
Q 010455 89 RFGSAMRSRGVNPGDRCGIYGSNC 112 (510)
Q Consensus 89 ~lA~~L~~~gv~~gd~Vai~~~ns 112 (510)
.+.+.|+++||++||+|.|..+-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356788899999999999998754
No 84
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=40.87 E-value=1.1e+02 Score=28.65 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=43.2
Q ss_pred HhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 95 ~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
.+.| +++|+.|..... +-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344 477776655543 44445566677789988877766555556667888999999998753
No 85
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=40.46 E-value=1.3e+02 Score=30.19 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=75.6
Q ss_pred CCCCCCeE--EEeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCeEEEecCCCCHHH
Q 010455 69 DGKVGPYV--WLTYQEVYDAAIRFGSAMR-----SRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTLGANA 140 (510)
Q Consensus 69 ~~~~~~~~--~~Ty~~l~~~v~~lA~~L~-----~~gv~~gd~Vai~~~ns~~-~~~~~lA~~~~G~~~v~l~~~~~~~~ 140 (510)
.|..|.++ .+|++.+...+..++..+. ...+..++++....+...+ .+..++..+..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 45555433 6799999988888877654 2356778888877776544 34456778888988876654444566
Q ss_pred HHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCC
Q 010455 141 VEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (510)
Q Consensus 141 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (510)
+...++..++..+.........+. .....+..++.++.-+..-
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~-~~~~~~~~lr~~~~gG~~l 306 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTG-LVPEDAPHLVYLGVGGEKM 306 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHT-CCGGGSTTCCEEEEESSCC
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcc-cCccccCceEEEEEecCCC
Confidence 778889999999988776554432 2233446677777666553
No 86
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=40.40 E-value=1.6e+02 Score=26.87 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=44.8
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|+.|..... +-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 52 a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 467776666553 44555666777799998887766655556667888999999999863
No 87
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=40.03 E-value=1.5e+02 Score=27.31 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=45.8
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 467754444455566666777778899998877766555556667888999999998753
No 88
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=38.57 E-value=1.2e+02 Score=23.37 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=41.2
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEe--cCCCCHHHHHH
Q 010455 90 FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL--YDTLGANAVEF 143 (510)
Q Consensus 90 lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~ 143 (510)
.+.+|.+.|+.+...+.+-..+..+.+.++-=+++.|...+.+ .+..+..+.+.
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 3678888999998888888888889999999999998765555 24566555443
No 89
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=38.44 E-value=50 Score=30.06 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 010455 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (510)
Q Consensus 76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns 112 (510)
..+|-++| .+.|+++||++||+|.+.++-+
T Consensus 20 ~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 35676655 5678888999999999998744
No 90
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=37.18 E-value=1.3e+02 Score=30.14 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=45.4
Q ss_pred hCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcC
Q 010455 96 SRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 96 ~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
+.| +++|++|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++.
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578887755 4445555666778888899888777766666677888999999999975
No 91
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=35.83 E-value=99 Score=29.22 Aligned_cols=61 Identities=11% Similarity=-0.021 Sum_probs=40.3
Q ss_pred HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCC-----CCHHHHHHHHHhcC--ccEEEE
Q 010455 92 SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAE--VSIAFV 155 (510)
Q Consensus 92 ~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~ 155 (510)
..|...++++||.|.+-.+....+ .-++...|+.++.++.. ...+++...+...+ .++|+.
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 334455788999988876655443 34566789887776543 46788888774444 666664
No 92
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=35.78 E-value=1.8e+02 Score=26.76 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.| +++|++|... ..+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 5777776654 4455566777777888998877767666666677888999999999864
No 93
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=35.50 E-value=2.1e+02 Score=28.61 Aligned_cols=87 Identities=9% Similarity=-0.115 Sum_probs=67.8
Q ss_pred EEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC--C-------HhhHHHHH
Q 010455 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--D-------VRYLMEDI 308 (510)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~-------~~~~~~~i 308 (510)
-.+|.+.+...+..++..+.. .++.++|++...+|-..- -...+++++..|+..+.... . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLS--LNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 578999999998888776633 367899999999887642 23457889999999887754 2 57788889
Q ss_pred hhhcCcEEEeccHHHHHHH
Q 010455 309 QELKPTMFSGVPRVYDRIY 327 (510)
Q Consensus 309 ~~~~~t~~~~~P~~~~~l~ 327 (510)
+..++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999999887766543
No 94
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=34.72 E-value=1.5e+02 Score=27.20 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=47.7
Q ss_pred EEeHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEc-CCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccE
Q 010455 77 WLTYQEVYDAAIRF--G-SAMRSRGVNPGDRCGIYG-SNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (510)
Q Consensus 77 ~~Ty~~l~~~v~~l--A-~~L~~~gv~~gd~Vai~~-~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (510)
.+++.+........ | +.|...++++|++|+|.. .-..-.+++.+|- ..|+.++.+. +.++ ...++..++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 35676665433221 2 334556899999999997 4556666666654 5688766654 3445 56677788887
Q ss_pred EEEc
Q 010455 153 AFVQ 156 (510)
Q Consensus 153 vi~~ 156 (510)
++-.
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7643
No 95
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=34.57 E-value=1.5e+02 Score=27.73 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=48.1
Q ss_pred EeHHHHHHHH--HHHH-HHHHh-CCCCCCCEEEEEcC-CchhHHHHHHHHHhcCCeE-EEecCCCCHHHHHHHHHhcCcc
Q 010455 78 LTYQEVYDAA--IRFG-SAMRS-RGVNPGDRCGIYGS-NCPEWIIAMEACNSQAITY-VPLYDTLGANAVEFIINHAEVS 151 (510)
Q Consensus 78 ~Ty~~l~~~v--~~lA-~~L~~-~gv~~gd~Vai~~~-ns~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~~ 151 (510)
+++.+..... -..| +.|.+ .++++|++|+|... -..-.+++.+|- ..|+.. +...+....++....++..++.
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5666644321 1122 23444 48999999999997 456666666665 458754 4444444445555667788988
Q ss_pred EEEEc
Q 010455 152 IAFVQ 156 (510)
Q Consensus 152 ~vi~~ 156 (510)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 87753
No 96
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=33.32 E-value=1.4e+02 Score=26.78 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 010455 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI 127 (510)
Q Consensus 48 ~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~ 127 (510)
.+++..+.-|+...+++. |...-++-..|..++.+++...+..|.+.|+ ...++.=|+...++.-..-.....
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~al~~lr~~~~i 92 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAAALYDIREKLDI 92 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHHHHHHHHHhcCC
Confidence 455556678998888877 6655555678999999999999999998865 255555566665422222223455
Q ss_pred eEEE
Q 010455 128 TYVP 131 (510)
Q Consensus 128 ~~v~ 131 (510)
+++-
T Consensus 93 Pvig 96 (269)
T 3ist_A 93 PVIG 96 (269)
T ss_dssp CEEE
T ss_pred CEEe
Confidence 5544
No 97
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=33.22 E-value=1.3e+02 Score=24.70 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEe--cCCCCHHHHHHH
Q 010455 90 FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL--YDTLGANAVEFI 144 (510)
Q Consensus 90 lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~~ 144 (510)
.+.+|.+.|+.+...+.|...+..+.+.++-=+++.|...+.| .+..+..+.+.+
T Consensus 88 ~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~RRL 144 (161)
T 1oft_A 88 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQL 144 (161)
T ss_dssp CHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHH
T ss_pred CHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHH
Confidence 4678888999888888888888889999999999998865555 345565554433
No 98
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=32.33 E-value=68 Score=29.86 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEcCCch------hHHH-HHHHHHhcCCeEEEecCC------------CCHHHHHHHHHhcCccEEEEcC
Q 010455 98 GVNPGDRCGIYGSNCP------EWII-AMEACNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 98 gv~~gd~Vai~~~ns~------~~~~-~~lA~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
-+++||+|+|++|.+. +.+- +.--+-..|..++.-..- ...+++...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999752 2222 222234567777654321 1344777888888999999875
No 99
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=32.03 E-value=1.4e+02 Score=27.69 Aligned_cols=74 Identities=11% Similarity=-0.056 Sum_probs=46.8
Q ss_pred EEeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEE
Q 010455 77 WLTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (510)
Q Consensus 77 ~~Ty~~l~~~v~~l---A~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (510)
.+++.+........ -+.|.+.++++|++|+|...-..-.+++.+|- ..|+.++.+..+... + ..++..++..+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~--~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHK--K-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTT--H-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHH--H-HHHHhcCCCee
Confidence 36666654222211 23456668999999999987555666666654 568877776654332 2 24566888888
Q ss_pred E
Q 010455 154 F 154 (510)
Q Consensus 154 i 154 (510)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 8
No 100
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=31.86 E-value=1.5e+02 Score=27.76 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHh--CCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcC
Q 010455 93 AMRS--RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 93 ~L~~--~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
.|.+ .++++|++|+|...-..-.+++.+|-...|+.++.+..+ ++.+ ..++..++..++-..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHH-HHHHHhCCCEEEecc
Confidence 3556 789999999999986666777777665448876666542 3343 345678888777543
No 101
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=30.98 E-value=98 Score=28.99 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCC
Q 010455 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK 159 (510)
Q Consensus 101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 159 (510)
+.+.|... ..+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++...
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 33443333 44555566778899999988777776666667788899999999998653
No 102
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=30.98 E-value=1.7e+02 Score=27.05 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=48.6
Q ss_pred EEeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEE
Q 010455 77 WLTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (510)
Q Consensus 77 ~~Ty~~l~~~v~~l---A~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (510)
.+++.+........ -+.|...++++|++|+|......-.+++.+|- ..|+.++.+.. +++.+. .++..++..+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 36776654222221 23455568999999999887556666666665 56887777655 344443 5677888877
Q ss_pred EEcC
Q 010455 154 FVQE 157 (510)
Q Consensus 154 i~~~ 157 (510)
+-..
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 103
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=30.84 E-value=18 Score=36.84 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=14.6
Q ss_pred HHHHHHhc-CCCee-eecccccc
Q 010455 400 EEFLRVTS-GAPLT-QGYGLTES 420 (510)
Q Consensus 400 ~~~~~~~~-g~~l~-~~yG~tE~ 420 (510)
...++..+ +.+++ ..|+.||.
T Consensus 319 ~~~l~~~~g~~p~~~~~Y~ASEg 341 (581)
T 4epl_A 319 VPKLRHYAGDLPLVSHDYGSSEG 341 (581)
T ss_dssp HHHHHHHHTTSCEEECCEEETTE
T ss_pred HHHHHHHcCCCccccCceeccce
Confidence 34455444 67776 89999995
No 104
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=30.76 E-value=1.6e+02 Score=27.19 Aligned_cols=78 Identities=9% Similarity=-0.051 Sum_probs=50.1
Q ss_pred EeHHHHHHHHHHH---HHHHHhC--CCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccE
Q 010455 78 LTYQEVYDAAIRF---GSAMRSR--GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (510)
Q Consensus 78 ~Ty~~l~~~v~~l---A~~L~~~--gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (510)
+++.+...-.... .+.|.+. ++++|++|+|...-..-.+++.+|-..-|+.++.++.+ ++.+ .+++..++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHH-HHHHHcCCCE
Confidence 5666554322221 2335554 78999999999886667777777776657777776553 3333 4567788888
Q ss_pred EEEcCC
Q 010455 153 AFVQEN 158 (510)
Q Consensus 153 vi~~~~ 158 (510)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776543
No 105
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=30.01 E-value=79 Score=29.57 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCch------hHHHHHHH-HHhcCCeEEEecCC------------CCHHHHHHHHHhcCccEEEEcC
Q 010455 98 GVNPGDRCGIYGSNCP------EWIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 98 gv~~gd~Vai~~~ns~------~~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
-+++||+|+|++|.+. +.+-.... +-..|..++.-... ...++|...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4789999999999873 22322232 33478777653211 1234677777778899999875
No 106
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=29.43 E-value=2.3e+02 Score=26.60 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=40.3
Q ss_pred HHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCC----CCHHHHHHHHHhc--CccEEEEcC
Q 010455 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHA--EVSIAFVQE 157 (510)
Q Consensus 94 L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 157 (510)
++..++++||.|.+..+....... ++...|+.++.++.. ...+++...++.. ++++|++..
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334457899998888777665543 334578877766543 4677888888754 567776654
No 107
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=27.20 E-value=1.3e+02 Score=27.90 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=45.9
Q ss_pred EeHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHhcCccEE
Q 010455 78 LTYQEVYDAAIRF--G-SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIA 153 (510)
Q Consensus 78 ~Ty~~l~~~v~~l--A-~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (510)
+++.+.......+ | +.+...++++|++|+|...-..-.+++.+| ...|+ .++.++.+ ++. ..+++..++..+
T Consensus 140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~v 215 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR--KHC-CDIALEYGATDI 215 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC--HHH-HHHHHHHTCCEE
T ss_pred CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC--HHH-HHHHHHhCCceE
Confidence 6666654321211 1 235566899999999998655566655555 46787 56666543 333 355677888877
Q ss_pred EE
Q 010455 154 FV 155 (510)
Q Consensus 154 i~ 155 (510)
+-
T Consensus 216 i~ 217 (352)
T 3fpc_A 216 IN 217 (352)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 108
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=27.05 E-value=2.8e+02 Score=25.26 Aligned_cols=64 Identities=6% Similarity=-0.042 Sum_probs=44.0
Q ss_pred HHhCCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~gv-~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.|. ++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 345554 6776555543 455556666777899988877666555556667888999999998764
No 109
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=27.02 E-value=1.2e+02 Score=28.74 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=41.4
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh
Q 010455 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (510)
Q Consensus 105 Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (510)
..+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++....
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 150 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLD 150 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTT
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 33444445556677777889999888777766666777888999999999986543
No 110
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.57 E-value=88 Score=29.74 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCch------hHHHHHHH-HHhcCCeEEEecCC------------CCHHHHHHHHHhcCccEEEEcC
Q 010455 98 GVNPGDRCGIYGSNCP------EWIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 98 gv~~gd~Vai~~~ns~------~~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
-+++||+|+|++|.+. +.+-.... +-..|..++.-+.. ...++|...+.+-++++|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999873 22222222 33478777654321 1234677777777889999875
No 111
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.66 E-value=95 Score=28.96 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEcCCch------hHHHHHHH-HHhcCCeEEEecCC------------CCHHHHHHHHHhcCccEEEEcC
Q 010455 98 GVNPGDRCGIYGSNCP------EWIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 98 gv~~gd~Vai~~~ns~------~~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
-+++||+|+|++|.+. +.+-.... +-..|..++.-+.- ...++|...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4789999999999864 22322233 33478777654321 1234677777778899999875
No 112
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=25.53 E-value=2.9e+02 Score=24.98 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=40.2
Q ss_pred HHhCCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 94 L~~~gv-~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
+.+.|. +++ .| ....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~~-vv--~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 58 AEKRGLLKNG-IV--EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHTTCCTTC-EE--EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCC-EE--EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344454 445 33 334344445666677789988777666555556667788899999998754
No 113
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.47 E-value=2.2e+02 Score=26.31 Aligned_cols=33 Identities=3% Similarity=-0.157 Sum_probs=13.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEe
Q 010455 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132 (510)
Q Consensus 100 ~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l 132 (510)
++||.|.+..+....+.....++...|+.++.+
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 119 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEE
Confidence 345555444443333333333333445544444
No 114
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.30 E-value=3.2e+02 Score=24.94 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEec--CC----CCHHHHHHHHHh----cCccEEEEcC
Q 010455 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY--DT----LGANAVEFIINH----AEVSIAFVQE 157 (510)
Q Consensus 99 v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~vi~~~ 157 (510)
+++||.|.+..+........ +...|+.++.++ .. ...+++...++. -+++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 45788887776655544433 566777776665 22 256777777764 3556666543
No 115
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.26 E-value=2.3e+02 Score=27.38 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=31.9
Q ss_pred EEEcCCchhHHH-HHHHHHhcCCeEEEecCCCCHH--HHHHHHHhcCccEEEEcCCChhhHhhcC
Q 010455 106 GIYGSNCPEWII-AMEACNSQAITYVPLYDTLGAN--AVEFIINHAEVSIAFVQENKIPSILSCL 167 (510)
Q Consensus 106 ai~~~ns~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 167 (510)
++++.+..+.+. ++.++.+.|-.++.-++..... .+...+...++++++++....+.+.+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 445555554443 3334445555555445544322 1222566677777777766555555444
No 116
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.06 E-value=1.5e+02 Score=20.61 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCe
Q 010455 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (510)
Q Consensus 76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~ 128 (510)
..+.+.++.+ .+.++++.+++.|.+++........+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 5678877754 344456788899999999888777777777778863
No 117
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=23.96 E-value=2.1e+02 Score=26.64 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=47.9
Q ss_pred EEeHHHHHHHH--HHHH-HHHHhC-CCCCC-CEEEEEcC-CchhHHHHHHHHHhcCCeEEEecCCCCH-HHHHHHHHhcC
Q 010455 77 WLTYQEVYDAA--IRFG-SAMRSR-GVNPG-DRCGIYGS-NCPEWIIAMEACNSQAITYVPLYDTLGA-NAVEFIINHAE 149 (510)
Q Consensus 77 ~~Ty~~l~~~v--~~lA-~~L~~~-gv~~g-d~Vai~~~-ns~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~ 149 (510)
.+++.+..... -..| +.|.+. ++++| ++|+|... -..-.+++.+|- ..|+.++.+...... ++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 36776654322 1222 234453 79999 99999987 556666666665 468866655433222 34445557788
Q ss_pred ccEEEEc
Q 010455 150 VSIAFVQ 156 (510)
Q Consensus 150 ~~~vi~~ 156 (510)
+..++-.
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8877753
No 118
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=23.92 E-value=3.5e+02 Score=26.38 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHHHHHhCC-CCCCCEEEEEcCCchhHHHHHHHHHh----cC--CeEEEecCCCC-H------HHHHHHHHhcCccEEE
Q 010455 89 RFGSAMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNS----QA--ITYVPLYDTLG-A------NAVEFIINHAEVSIAF 154 (510)
Q Consensus 89 ~lA~~L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~vi 154 (510)
++.+.+.+.+ +.++++|++.++-..|+++++..+.. .| ..++-++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4556666665 68899999999999999888877766 34 56777787765 2 2455667777888777
Q ss_pred EcCC
Q 010455 155 VQEN 158 (510)
Q Consensus 155 ~~~~ 158 (510)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 119
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.87 E-value=3.1e+02 Score=24.28 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 010455 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (510)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G 126 (510)
..+++..+..|+...+.+. |...-.+-..++.++.+++...++.|.+.|+ | ..++.=|+...++.-..-...+
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTas~~~l~~lr~~~~ 89 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI---K-MLVIACNTATAVVLEEMQKQLP 89 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---S-EEEECCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhhHHHHHHHHHhCC
Confidence 3456666778988888777 6544344457899999999999999988765 3 4444445554322222223345
Q ss_pred CeEEE
Q 010455 127 ITYVP 131 (510)
Q Consensus 127 ~~~v~ 131 (510)
.+++-
T Consensus 90 iPvig 94 (267)
T 2gzm_A 90 IPVVG 94 (267)
T ss_dssp SCEEE
T ss_pred CCEEe
Confidence 55554
No 120
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=23.78 E-value=4e+02 Score=24.74 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhc---CccEEEEcC
Q 010455 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHA---EVSIAFVQE 157 (510)
Q Consensus 99 v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~~ 157 (510)
.++||.|.+..+....+. .++...|+.++.++. ...+++...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 467887777766554443 345556777777654 4567777777654 566666554
No 121
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=23.68 E-value=3.2e+02 Score=25.52 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCC----CCHHHHHHHHHhcCccEEEEcC
Q 010455 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (510)
Q Consensus 99 v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (510)
+++||.|.+..+...... ..-++...|+.++.++.. ...+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 568888777765433311 223455667666555432 3567777777755667666654
No 122
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=23.51 E-value=2.2e+02 Score=26.71 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFV 155 (510)
Q Consensus 94 L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (510)
|...++++|++|+|...-..-.+++.+|- ..|+ .++.+..+ ++. ..+++..++..++-
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 55558999999999987545556555554 6788 66666543 333 34566778877664
No 123
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.07 E-value=2.2e+02 Score=26.38 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCC-------CCHHHHHHHHHhcCccEEEEc
Q 010455 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-------LGANAVEFIINHAEVSIAFVQ 156 (510)
Q Consensus 100 ~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 156 (510)
++||.|.+..+....+ ..++...|+.++.++.. ...+++...++..++++|++.
T Consensus 107 ~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 107 SPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp CTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 4666665544443332 23344566665555432 456666666654455655543
No 124
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=22.97 E-value=2.1e+02 Score=26.64 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCC-----CCHHHHHHHHHhcCccEEEE
Q 010455 97 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFV 155 (510)
Q Consensus 97 ~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~ 155 (510)
.++++||.|.+..+...... -++...|+.++.++.. ...+++...++. ++++|++
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 34567777666555444332 3344566655554421 345555555542 4455554
No 125
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=22.89 E-value=2.1e+02 Score=26.59 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=46.1
Q ss_pred EEeHHHHHHHHHH--H-HHHHHhCCCC-CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccE
Q 010455 77 WLTYQEVYDAAIR--F-GSAMRSRGVN-PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (510)
Q Consensus 77 ~~Ty~~l~~~v~~--l-A~~L~~~gv~-~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (510)
.+++.+....... . -+.|.+.+++ +|++|+|...-..-.+++.+|-. .|+.++.+..+ ++.+..+.+..++..
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 3677664322111 1 1335566888 99999999865566666666654 58776666553 334444444677776
Q ss_pred EEEc
Q 010455 153 AFVQ 156 (510)
Q Consensus 153 vi~~ 156 (510)
++..
T Consensus 229 vi~~ 232 (357)
T 2cf5_A 229 YVIG 232 (357)
T ss_dssp EEET
T ss_pred eecc
Confidence 6643
No 126
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.68 E-value=3.1e+02 Score=25.10 Aligned_cols=63 Identities=8% Similarity=-0.022 Sum_probs=40.4
Q ss_pred HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455 92 SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (510)
Q Consensus 92 ~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (510)
..+...++++|++|++...-..-.+++.+|- ..|+ +++.++.+ ++. ..+++..++..++-..+
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~~--~~k-~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDIS--SEK-LALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HHH-HHHHHHTTCSEEEETTT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEech--HHH-HHHHHHcCCeEEEeCCC
Confidence 3355668999999999987556666555554 4554 44555442 333 45667888888876543
No 127
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.24 E-value=1.8e+02 Score=22.80 Aligned_cols=57 Identities=7% Similarity=-0.070 Sum_probs=39.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh
Q 010455 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161 (510)
Q Consensus 102 gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 161 (510)
-|.|.++.| ......++..|..+|...+.+.+....+++....+..+.+ +.++....
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~--~igpnc~g 126 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE--YSFGRCIM 126 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE--EECSCCHH
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE--EEcCCcce
Confidence 466777766 4555556667888888888888776678888888877766 44555443
No 128
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=22.17 E-value=4.5e+02 Score=25.41 Aligned_cols=57 Identities=5% Similarity=-0.168 Sum_probs=41.9
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh
Q 010455 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161 (510)
Q Consensus 105 Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 161 (510)
..+....+-.-..+.++|.++|..++.+-|...+..-...++..++.+++++....+
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~ 218 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV 218 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 445555556666777778888998877766666666677788999999999876433
No 129
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.16 E-value=2.1e+02 Score=25.73 Aligned_cols=62 Identities=8% Similarity=-0.066 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 010455 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (510)
Q Consensus 48 ~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~ 116 (510)
.++...+.-|+...+.+. |...-++-.-+|.++.+++...++.|.+.|+ ...+++=|+...+
T Consensus 39 v~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~----d~IVIACNTa~~~ 100 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQI----DMLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChhHH
Confidence 345555678998888887 7544444568999999999999999977765 3555666666644
No 130
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.90 E-value=1.8e+02 Score=27.98 Aligned_cols=51 Identities=4% Similarity=-0.038 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCEEEEEcCCc-hh-HHHHHHHHHhcCCeEEEec
Q 010455 83 VYDAAIRFGSAMRSR--GVNPGDRCGIYGSNC-PE-WIIAMEACNSQAITYVPLY 133 (510)
Q Consensus 83 l~~~v~~lA~~L~~~--gv~~gd~Vai~~~ns-~~-~~~~~lA~~~~G~~~v~l~ 133 (510)
+..+.+++|..+.+. ++++|+.|.|..+.. .+ .-.+.-++.++|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 356778888888876 689999999999864 23 3455667888898877654
No 131
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.87 E-value=2.1e+02 Score=26.78 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455 92 SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (510)
Q Consensus 92 ~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (510)
+.|.+.++++|++|+|......-.+++.+|- ..|+.++.+..+ ++.+. .++..++..++-
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~~--~~~~~-~a~~lGa~~vi~ 244 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTS--EAKRE-AAKALGADEVVN 244 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESS--GGGHH-HHHHHTCSEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHH-HHHHcCCcEEec
Confidence 3455668999999999987555666666654 468876655543 33333 334577776664
No 132
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=21.68 E-value=4.6e+02 Score=23.85 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCC-CCCCCEEEEEcCCchhHHHHHHHHHhc----C---CeEEEecCCCC---H---HHHHHHHHhcCccE
Q 010455 87 AIRFGSAMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQ----A---ITYVPLYDTLG---A---NAVEFIINHAEVSI 152 (510)
Q Consensus 87 v~~lA~~L~~~g-v~~gd~Vai~~~ns~~~~~~~lA~~~~----G---~~~v~l~~~~~---~---~~l~~~l~~~~~~~ 152 (510)
..++.+.+.+.+ +.++++|++.++-..|..+++..+... | ..++.++..+. . +.+..+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 345566666554 678999999999999999888777764 3 45667776653 2 23455666777777
Q ss_pred EEEcCC
Q 010455 153 AFVQEN 158 (510)
Q Consensus 153 vi~~~~ 158 (510)
.+.+-+
T Consensus 88 ~v~~~~ 93 (317)
T 1wy5_A 88 FVGKED 93 (317)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 776543
No 133
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=21.62 E-value=2.2e+02 Score=26.48 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=45.0
Q ss_pred EeHHHHHHHHHHHHH---HHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHhcCccEE
Q 010455 78 LTYQEVYDAAIRFGS---AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIA 153 (510)
Q Consensus 78 ~Ty~~l~~~v~~lA~---~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (510)
+++.+..- ...++. .|...++++|++|+|...-..-.+++.+|- ..|+ .++.+..+ ++.+ .+++..++..+
T Consensus 146 l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~~-~~a~~lGa~~v 220 (356)
T 1pl8_A 146 VTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--ATRL-SKAKEIGADLV 220 (356)
T ss_dssp SCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HHHH-HHHHHTTCSEE
T ss_pred CCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHHH-HHHHHhCCCEE
Confidence 67766442 223332 244458999999999987555666666665 4687 66666542 3333 44567788766
Q ss_pred EE
Q 010455 154 FV 155 (510)
Q Consensus 154 i~ 155 (510)
+.
T Consensus 221 i~ 222 (356)
T 1pl8_A 221 LQ 222 (356)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 134
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=21.61 E-value=3.8e+02 Score=24.78 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecC----CCCHHHHHHHHHhcCccEEEEc
Q 010455 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD----TLGANAVEFIINHAEVSIAFVQ 156 (510)
Q Consensus 99 v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~vi~~ 156 (510)
+++||.|.+..+....+. ..-++...|+.++.++. ....+++...++..++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 457888777766554432 12245566766655543 2456777777765456666654
No 135
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=21.59 E-value=3.1e+02 Score=25.02 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=39.0
Q ss_pred HhCCCCCCCEEEEEcCCc-hhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455 95 RSRGVNPGDRCGIYGSNC-PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (510)
Q Consensus 95 ~~~gv~~gd~Vai~~~ns-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (510)
...++++|++|+|....+ .-..++.+| ...|+.++.+.. +++.+..+.+..++..++-
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 345899999999999854 555555544 467887766654 3555555547778776654
No 136
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=21.55 E-value=3.3e+02 Score=24.23 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=43.7
Q ss_pred HHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (510)
Q Consensus 49 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~ 115 (510)
++...+.-|+...+.+. |...-++-.-+|.++.+++...+..|.+.|+ ...++.=|+...
T Consensus 23 ~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~----~~iVIACNTa~~ 82 (268)
T 3out_A 23 VKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEV----KAIIIACNTISA 82 (268)
T ss_dssp HHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHH
T ss_pred HHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChHH
Confidence 44445568888888777 6544455568999999999999999998765 355555566654
No 137
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.91 E-value=4e+02 Score=25.23 Aligned_cols=59 Identities=8% Similarity=-0.190 Sum_probs=42.7
Q ss_pred CCC-EEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh
Q 010455 101 PGD-RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (510)
Q Consensus 101 ~gd-~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (510)
+++ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++....
T Consensus 110 ~~~~~vv~-aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 169 (398)
T 4d9i_A 110 GEKMTFAT-TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYD 169 (398)
T ss_dssp SCCCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHH
T ss_pred cCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 344 4433 5555566677777888899888777766666777788999999999987543
No 138
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=20.85 E-value=3.6e+02 Score=24.02 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhH
Q 010455 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEW 115 (510)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~ 115 (510)
..+++..+..|+...+.+. |...-.+-..++.++.+++...+..|.+ .|+ | ..++.=|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~---d-~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHI---K-MLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCC---S-EEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC---C-EEEEeCchhhH
Confidence 4566667789998888776 5533334457899999999999999998 776 3 44444455553
No 139
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=20.76 E-value=2.7e+02 Score=26.96 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=46.7
Q ss_pred EEeHHHHHHHHHHHHHH---HHh---CCCCCCCEEEEEcCCc-hhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcC
Q 010455 77 WLTYQEVYDAAIRFGSA---MRS---RGVNPGDRCGIYGSNC-PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAE 149 (510)
Q Consensus 77 ~~Ty~~l~~~v~~lA~~---L~~---~gv~~gd~Vai~~~ns-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 149 (510)
.+++.+...-....+.. |.. .++++|++|+|....+ .-.+++.+| ...|+.++.+.. +++.+. .++..+
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~lG 273 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAMG 273 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHHT
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhhC
Confidence 36777765322222222 322 4789999999998844 555555555 467887776653 455544 457788
Q ss_pred ccEEEEc
Q 010455 150 VSIAFVQ 156 (510)
Q Consensus 150 ~~~vi~~ 156 (510)
+..++-.
T Consensus 274 a~~vi~~ 280 (456)
T 3krt_A 274 AEAIIDR 280 (456)
T ss_dssp CCEEEET
T ss_pred CcEEEec
Confidence 8877653
No 140
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=20.72 E-value=1.6e+02 Score=26.98 Aligned_cols=57 Identities=11% Similarity=-0.096 Sum_probs=40.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCC
Q 010455 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK 159 (510)
Q Consensus 102 gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 159 (510)
++.|... ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++...
T Consensus 54 ~~~vv~~-ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~ 110 (318)
T 2rkb_A 54 CRHLVCS-SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW 110 (318)
T ss_dssp CCEEEEC-CCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSH
T ss_pred CCEEEEE-CCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCH
Confidence 3444443 44555566677788999988777666555666778889999999987643
No 141
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=20.54 E-value=1.7e+02 Score=26.92 Aligned_cols=57 Identities=4% Similarity=-0.057 Sum_probs=42.0
Q ss_pred CEEEEE-cCCchhHHHHHHHHHhcCCeEEEecCCCC-HHHHHHHHHhcCccEEEEcCCC
Q 010455 103 DRCGIY-GSNCPEWIIAMEACNSQAITYVPLYDTLG-ANAVEFIINHAEVSIAFVQENK 159 (510)
Q Consensus 103 d~Vai~-~~ns~~~~~~~lA~~~~G~~~v~l~~~~~-~~~l~~~l~~~~~~~vi~~~~~ 159 (510)
++|.-. ...+-.-....++|.+.|..++.+-|... +..-...++..++++++++...
T Consensus 71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~ 129 (325)
T 1j0a_A 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCS
T ss_pred CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcch
Confidence 345444 25566677788899999998877666544 5666678889999999998754
No 142
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=20.01 E-value=3.4e+02 Score=25.11 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecC--C--CCHHHHHHHHHh-cCccEEEEcC
Q 010455 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--T--LGANAVEFIINH-AEVSIAFVQE 157 (510)
Q Consensus 99 v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~-~~~~~vi~~~ 157 (510)
+++||.|.+..+...... ..-.+...|+.++.++. . ...+++...++. .++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 468888877766544332 11122345665554443 2 467788888864 3567776654
Done!