Query 010456
Match_columns 510
No_of_seqs 168 out of 782
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 8E-141 2E-145 1127.1 49.7 493 1-504 1-494 (497)
2 PLN02362 hexokinase 100.0 2E-139 4E-144 1119.4 49.4 505 1-507 1-506 (509)
3 PLN02596 hexokinase-like 100.0 2E-138 5E-143 1105.6 49.6 483 1-501 2-486 (490)
4 PLN02914 hexokinase 100.0 1E-134 3E-139 1076.8 48.2 457 35-502 33-490 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 6E-125 1E-129 987.7 38.8 448 33-504 21-472 (474)
6 PTZ00107 hexokinase; Provision 100.0 4E-122 8E-127 979.7 45.9 429 39-501 7-462 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 4E-106 8E-111 824.0 39.8 445 35-502 13-462 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 5E-68 1.1E-72 525.7 20.1 240 246-501 1-243 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 6.5E-60 1.4E-64 455.7 21.0 202 38-244 2-206 (206)
10 PRK13310 N-acetyl-D-glucosamin 99.7 1.3E-15 2.9E-20 155.3 26.7 291 99-496 2-300 (303)
11 TIGR00744 ROK_glcA_fam ROK fam 99.7 1.4E-15 3E-20 155.9 26.6 302 100-497 1-309 (318)
12 PRK09698 D-allose kinase; Prov 99.7 4.5E-15 9.7E-20 151.3 26.2 286 96-497 3-295 (302)
13 PRK09557 fructokinase; Reviewe 99.7 3E-14 6.5E-19 145.3 25.6 291 99-496 2-299 (301)
14 PRK05082 N-acetylmannosamine k 99.6 9.1E-14 2E-18 141.0 26.9 278 99-496 3-286 (291)
15 COG1940 NagC Transcriptional r 99.6 2.3E-13 4.9E-18 139.5 26.9 295 95-498 4-307 (314)
16 PRK13311 N-acetyl-D-glucosamin 99.5 6.1E-12 1.3E-16 125.7 22.5 239 99-424 2-246 (256)
17 PRK12408 glucokinase; Provisio 99.5 3.6E-12 7.9E-17 132.4 20.0 297 92-496 10-331 (336)
18 PRK00292 glk glucokinase; Prov 99.4 1.7E-11 3.7E-16 126.1 23.7 286 98-496 3-313 (316)
19 PF00480 ROK: ROK family; Int 99.1 2.9E-10 6.3E-15 106.8 11.6 141 101-273 1-145 (179)
20 PRK14101 bifunctional glucokin 99.1 2E-09 4.3E-14 121.0 18.9 291 97-499 18-331 (638)
21 PTZ00288 glucokinase 1; Provis 98.9 2.1E-07 4.6E-12 98.9 23.7 332 61-501 5-393 (405)
22 TIGR00749 glk glucokinase, pro 98.9 6.1E-08 1.3E-12 99.9 16.4 289 100-493 1-316 (316)
23 KOG1794 N-Acetylglucosamine ki 98.7 4.7E-06 1E-10 83.4 22.2 310 96-501 2-319 (336)
24 PF01869 BcrAD_BadFG: BadF/Bad 98.6 9.4E-07 2E-11 88.9 14.0 271 100-496 1-271 (271)
25 smart00732 YqgFc Likely ribonu 98.1 9.5E-06 2.1E-10 68.7 6.4 97 98-239 2-99 (99)
26 PF02685 Glucokinase: Glucokin 97.9 0.00019 4.1E-09 74.2 14.7 290 100-497 1-314 (316)
27 COG2971 Predicted N-acetylgluc 97.6 0.018 3.9E-07 58.7 21.8 274 97-497 5-290 (301)
28 TIGR02707 butyr_kinase butyrat 97.4 0.073 1.6E-06 56.0 24.2 56 398-471 266-321 (351)
29 PRK03011 butyrate kinase; Prov 96.7 0.93 2E-05 47.9 25.2 71 398-492 268-338 (358)
30 COG0837 Glk Glucokinase [Carbo 96.2 1.2 2.5E-05 45.7 21.2 184 97-332 6-206 (320)
31 PF00370 FGGY_N: FGGY family o 95.5 0.053 1.2E-06 53.5 8.3 60 98-160 1-63 (245)
32 PRK13318 pantothenate kinase; 95.3 0.019 4.1E-07 57.6 4.5 82 246-338 124-210 (258)
33 COG1069 AraB Ribulose kinase [ 93.7 13 0.00029 41.0 23.0 80 98-183 4-84 (544)
34 TIGR01314 gntK_FGGY gluconate 93.3 0.25 5.4E-06 54.3 8.0 59 99-160 2-63 (505)
35 TIGR01315 5C_CHO_kinase FGGY-f 92.8 0.3 6.5E-06 54.3 7.8 60 99-161 2-64 (541)
36 TIGR01312 XylB D-xylulose kina 92.6 0.35 7.7E-06 52.5 8.0 76 100-182 1-81 (481)
37 PRK10939 autoinducer-2 (AI-2) 92.5 0.35 7.7E-06 53.4 7.9 60 98-160 4-68 (520)
38 TIGR01311 glycerol_kin glycero 92.4 0.35 7.5E-06 53.1 7.5 61 98-161 2-65 (493)
39 PRK00047 glpK glycerol kinase; 91.9 0.4 8.6E-06 52.6 7.3 61 98-161 6-69 (498)
40 TIGR01234 L-ribulokinase L-rib 91.9 0.43 9.4E-06 52.9 7.6 61 98-161 2-77 (536)
41 PRK15027 xylulokinase; Provisi 91.7 0.51 1.1E-05 51.6 7.7 60 98-160 1-63 (484)
42 PRK10331 L-fuculokinase; Provi 91.4 0.61 1.3E-05 50.8 8.0 59 98-159 3-66 (470)
43 PRK00976 hypothetical protein; 91.2 1.9 4.1E-05 44.9 10.9 74 398-498 238-311 (326)
44 COG1070 XylB Sugar (pentulose 90.6 0.72 1.5E-05 50.8 7.7 62 98-161 5-69 (502)
45 PTZ00294 glycerol kinase-like 90.2 0.85 1.8E-05 50.2 7.8 60 98-160 3-65 (504)
46 TIGR02628 fuculo_kin_coli L-fu 90.2 0.77 1.7E-05 50.0 7.4 59 98-159 2-65 (465)
47 PRK13321 pantothenate kinase; 89.2 0.88 1.9E-05 45.6 6.4 47 99-154 2-48 (256)
48 PLN02295 glycerol kinase 88.8 1.2 2.6E-05 49.2 7.6 60 99-161 2-64 (512)
49 PRK04123 ribulokinase; Provisi 88.5 1.4 3.1E-05 49.0 8.0 61 98-161 4-74 (548)
50 PF02782 FGGY_C: FGGY family o 88.0 2.8 6.2E-05 39.5 8.8 46 445-499 152-197 (198)
51 TIGR01175 pilM type IV pilus a 81.4 13 0.00029 38.4 10.8 102 98-219 4-106 (348)
52 TIGR02627 rhamnulo_kin rhamnul 80.6 2.4 5.3E-05 45.9 5.2 59 100-158 1-63 (454)
53 PRK13410 molecular chaperone D 80.3 5.6 0.00012 45.6 8.1 83 393-501 297-379 (668)
54 KOG2517 Ribulose kinase and re 80.1 11 0.00023 41.8 9.8 97 96-203 5-103 (516)
55 COG0554 GlpK Glycerol kinase [ 77.4 7.5 0.00016 42.4 7.5 107 96-216 4-119 (499)
56 CHL00094 dnaK heat shock prote 76.0 8.3 0.00018 43.7 7.9 49 444-501 331-379 (621)
57 PTZ00400 DnaK-type molecular c 74.5 10 0.00022 43.4 8.1 83 393-501 336-418 (663)
58 PTZ00186 heat shock 70 kDa pre 74.4 15 0.00031 42.2 9.3 83 393-501 322-404 (657)
59 PLN02669 xylulokinase 74.2 9.4 0.0002 42.8 7.6 45 446-499 449-493 (556)
60 PRK00290 dnaK molecular chaper 72.7 7.9 0.00017 43.9 6.7 49 444-501 329-377 (627)
61 PRK05183 hscA chaperone protei 72.6 8.9 0.00019 43.5 7.0 84 392-501 296-379 (616)
62 PRK15080 ethanolamine utilizat 70.8 38 0.00081 34.1 10.4 114 91-239 18-131 (267)
63 PRK13324 pantothenate kinase; 69.1 23 0.00051 35.7 8.4 47 99-153 2-48 (258)
64 PTZ00009 heat shock 70 kDa pro 68.8 29 0.00062 39.7 10.1 50 444-501 335-384 (653)
65 TIGR01174 ftsA cell division p 67.3 1.7E+02 0.0036 30.7 15.6 33 206-240 156-188 (371)
66 TIGR00241 CoA_E_activ CoA-subs 67.3 14 0.0003 36.7 6.4 46 99-159 2-47 (248)
67 PLN03184 chloroplast Hsp70; Pr 63.0 21 0.00046 40.9 7.6 83 393-501 334-416 (673)
68 TIGR00904 mreB cell shape dete 62.1 1.3E+02 0.0029 30.9 12.8 48 210-259 114-161 (333)
69 TIGR01314 gntK_FGGY gluconate 61.9 38 0.00083 37.2 9.1 77 398-500 374-450 (505)
70 COG4972 PilM Tfp pilus assembl 60.2 37 0.0008 35.5 7.9 128 98-227 11-168 (354)
71 PRK13411 molecular chaperone D 59.1 36 0.00078 39.0 8.5 19 97-115 2-20 (653)
72 TIGR02350 prok_dnaK chaperone 57.7 21 0.00046 40.1 6.4 83 393-501 293-375 (595)
73 PRK10939 autoinducer-2 (AI-2) 56.7 53 0.0012 36.3 9.2 46 446-500 413-458 (520)
74 PF00012 HSP70: Hsp70 protein; 55.7 36 0.00078 38.0 7.8 33 208-242 149-181 (602)
75 KOG0104 Molecular chaperones G 54.4 2E+02 0.0044 33.5 13.0 83 393-501 333-416 (902)
76 PRK13929 rod-share determining 53.8 2.7E+02 0.0059 28.8 13.6 48 211-260 115-162 (335)
77 TIGR01991 HscA Fe-S protein as 52.0 53 0.0011 37.2 8.3 83 393-501 281-363 (599)
78 TIGR01312 XylB D-xylulose kina 50.9 78 0.0017 34.3 9.2 47 446-501 394-440 (481)
79 PTZ00294 glycerol kinase-like 50.6 74 0.0016 35.0 9.1 46 446-500 410-455 (504)
80 PRK03657 hypothetical protein; 50.2 47 0.001 31.4 6.4 67 50-118 71-145 (170)
81 PRK00047 glpK glycerol kinase; 49.9 70 0.0015 35.1 8.7 46 446-500 407-452 (498)
82 TIGR01234 L-ribulokinase L-rib 48.4 85 0.0018 34.8 9.1 49 445-501 438-486 (536)
83 COG1521 Pantothenate kinase ty 48.4 75 0.0016 32.0 7.8 29 309-337 177-207 (251)
84 PRK04123 ribulokinase; Provisi 47.0 74 0.0016 35.3 8.4 48 445-500 441-488 (548)
85 TIGR01311 glycerol_kin glycero 46.8 91 0.002 34.1 9.0 46 446-500 403-448 (493)
86 COG1070 XylB Sugar (pentulose 46.1 1.7E+02 0.0037 32.2 11.0 77 398-500 374-450 (502)
87 PRK01433 hscA chaperone protei 45.5 76 0.0016 36.0 8.3 19 97-115 19-37 (595)
88 PRK13927 rod shape-determining 44.9 3.5E+02 0.0077 27.6 12.6 45 210-256 112-156 (334)
89 PRK15027 xylulokinase; Provisi 43.4 1.2E+02 0.0025 33.2 9.1 47 210-257 210-257 (484)
90 COG0443 DnaK Molecular chapero 41.2 1.1E+02 0.0024 34.5 8.7 175 97-304 5-216 (579)
91 PRK10331 L-fuculokinase; Provi 41.2 1.2E+02 0.0026 33.0 8.8 47 446-501 393-439 (470)
92 COG5146 PanK Pantothenate kina 40.7 71 0.0015 32.1 6.1 175 98-307 19-200 (342)
93 TIGR03192 benz_CoA_bzdQ benzoy 40.6 63 0.0014 33.3 6.0 69 395-498 218-288 (293)
94 TIGR01315 5C_CHO_kinase FGGY-f 40.5 1.2E+02 0.0027 33.7 8.9 47 445-500 446-492 (541)
95 smart00842 FtsA Cell division 39.9 2.1E+02 0.0047 26.8 9.3 56 99-159 1-58 (187)
96 PRK13317 pantothenate kinase; 37.7 1.5E+02 0.0033 30.1 8.3 49 445-497 225-273 (277)
97 PLN02295 glycerol kinase 36.0 1.5E+02 0.0032 32.8 8.5 48 445-501 415-462 (512)
98 KOG2517 Ribulose kinase and re 35.8 99 0.0022 34.4 6.9 49 445-502 417-465 (516)
99 TIGR00671 baf pantothenate kin 35.4 98 0.0021 30.8 6.4 43 100-151 2-44 (243)
100 PRK10854 exopolyphosphatase; P 34.9 1.5E+02 0.0033 32.8 8.4 62 98-159 12-75 (513)
101 TIGR02628 fuculo_kin_coli L-fu 33.9 1.9E+02 0.0041 31.5 8.8 47 446-501 397-443 (465)
102 PRK13430 F0F1 ATP synthase sub 33.6 4E+02 0.0087 27.0 10.6 46 444-493 200-245 (271)
103 TIGR03286 methan_mark_15 putat 33.4 56 0.0012 35.2 4.5 24 92-115 139-162 (404)
104 PF02419 PsbL: PsbL protein; 33.3 33 0.00072 24.0 1.8 30 308-337 2-31 (37)
105 PF11104 PilM_2: Type IV pilus 33.1 91 0.002 32.3 6.0 59 101-161 1-59 (340)
106 COG3734 DgoK 2-keto-3-deoxy-ga 32.1 39 0.00084 34.7 2.8 23 96-118 4-26 (306)
107 PRK00753 psbL photosystem II r 31.8 47 0.001 23.4 2.4 30 308-337 4-33 (39)
108 TIGR03706 exo_poly_only exopol 31.7 1.6E+02 0.0034 30.2 7.3 61 99-159 2-64 (300)
109 TIGR02259 benz_CoA_red_A benzo 31.6 98 0.0021 33.5 5.8 50 394-469 358-407 (432)
110 PRK13320 pantothenate kinase; 31.3 1.1E+02 0.0023 30.6 5.8 17 99-115 4-20 (244)
111 PF09887 DUF2114: Uncharacteri 31.0 4.4E+02 0.0095 28.3 10.3 55 442-501 365-422 (448)
112 CHL00038 psbL photosystem II p 29.6 56 0.0012 23.0 2.4 30 308-337 3-32 (38)
113 TIGR02518 EutH_ACDH acetaldehy 29.6 41 0.00089 37.1 2.9 76 175-259 110-198 (488)
114 COG0145 HyuA N-methylhydantoin 29.5 94 0.002 35.8 5.7 61 56-116 210-297 (674)
115 TIGR00555 panK_eukar pantothen 29.4 99 0.0021 31.7 5.3 46 99-156 2-47 (279)
116 PF11215 DUF3010: Protein of u 29.3 1.4E+02 0.003 27.4 5.6 59 99-161 3-61 (138)
117 PF00012 HSP70: Hsp70 protein; 29.2 1.1E+02 0.0024 34.1 6.2 25 95-119 186-210 (602)
118 PRK10640 rhaB rhamnulokinase; 28.4 2.3E+02 0.0051 30.9 8.5 45 446-500 379-423 (471)
119 TIGR03285 methan_mark_14 putat 28.0 5.9E+02 0.013 27.3 10.6 54 442-501 362-418 (445)
120 TIGR02261 benz_CoA_red_D benzo 27.9 1.4E+02 0.0029 30.4 5.9 49 394-468 188-236 (262)
121 TIGR02627 rhamnulo_kin rhamnul 27.5 2.3E+02 0.0051 30.6 8.2 46 446-501 391-436 (454)
122 COG1546 CinA Uncharacterized p 27.1 1.3E+02 0.0027 28.4 5.1 67 51-119 66-140 (162)
123 PF05402 PqqD: Coenzyme PQQ sy 26.8 1.4E+02 0.0031 22.9 4.8 34 37-70 30-63 (68)
124 PRK13411 molecular chaperone D 26.4 1.6E+02 0.0035 33.7 7.0 25 95-119 184-208 (653)
125 TIGR02350 prok_dnaK chaperone 26.2 1.5E+02 0.0033 33.3 6.7 23 96-118 182-204 (595)
126 TIGR03123 one_C_unchar_1 proba 26.2 46 0.00099 34.7 2.3 30 395-424 249-278 (318)
127 TIGR03286 methan_mark_15 putat 25.4 1.7E+02 0.0036 31.7 6.4 69 37-114 17-87 (404)
128 PF14574 DUF4445: Domain of un 24.7 1.4E+02 0.0031 32.3 5.8 81 388-497 295-376 (412)
129 PRK07058 acetate kinase; Provi 24.5 3E+02 0.0066 29.7 8.1 51 398-470 296-346 (396)
130 PRK11031 guanosine pentaphosph 24.2 2.5E+02 0.0053 31.1 7.7 62 98-159 7-70 (496)
131 TIGR00987 himA integration hos 23.8 1.6E+02 0.0036 24.6 4.9 36 40-75 5-40 (96)
132 PRK10753 transcriptional regul 23.7 1.7E+02 0.0037 24.4 4.9 35 41-75 5-39 (90)
133 KOG3127 Deoxycytidylate deamin 23.3 51 0.0011 32.5 1.9 22 234-255 73-94 (230)
134 smart00411 BHL bacterial (prok 23.0 1.8E+02 0.004 23.7 5.0 36 40-75 4-39 (90)
135 PRK00285 ihfA integration host 22.6 1.8E+02 0.0038 24.5 4.9 36 40-75 6-41 (99)
136 CHL00094 dnaK heat shock prote 22.6 1.8E+02 0.004 33.0 6.5 22 97-118 187-208 (621)
137 PF13941 MutL: MutL protein 22.6 97 0.0021 34.0 4.0 29 98-126 1-29 (457)
138 TIGR00199 cinA_cterm competenc 22.5 1.6E+02 0.0035 27.0 5.0 54 50-104 53-114 (146)
139 PRK00290 dnaK molecular chaper 22.3 2.2E+02 0.0048 32.3 7.0 22 97-118 185-206 (627)
140 PF01968 Hydantoinase_A: Hydan 22.1 81 0.0017 32.2 3.2 18 98-115 78-95 (290)
141 PRK13326 pantothenate kinase; 22.0 2E+02 0.0043 29.1 5.9 45 98-151 7-51 (262)
142 PLN02544 phosphoribosylaminoim 21.8 1.4E+02 0.0031 31.8 4.9 92 315-413 155-252 (370)
143 PRK13410 molecular chaperone D 21.7 2.4E+02 0.0051 32.6 7.1 23 96-118 186-208 (668)
144 PRK03661 hypothetical protein; 21.6 1.7E+02 0.0037 27.4 5.0 68 50-118 65-140 (164)
145 PLN02669 xylulokinase 21.3 3.9E+02 0.0085 30.0 8.6 27 89-118 3-29 (556)
146 PF00216 Bac_DNA_binding: Bact 20.7 1.9E+02 0.0042 23.4 4.7 36 40-75 4-39 (90)
147 PRK13428 F0F1 ATP synthase sub 20.4 9.2E+02 0.02 26.3 11.1 157 315-494 252-420 (445)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=8.2e-141 Score=1127.12 Aligned_cols=493 Identities=59% Similarity=0.978 Sum_probs=456.8
Q ss_pred CCccceeeeeehhhhhhhhhhheeeechhhhchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 010456 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRVKSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKL 80 (510)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l 80 (510)
||| +.+++++++++++|++++..+++|.++..+|.++++++++|+++|.+|.++|++|+++|..||++||+++++|++
T Consensus 1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (497)
T PLN02405 1 MGK--VAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKL 78 (497)
T ss_pred CCc--eeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 555 445666777777777777888888877778889999999999999999999999999999999999998767899
Q ss_pred ceeecccccCCCCccceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhc
Q 010456 81 KMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 81 ~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
+||||||+++|||+|+|+|||||||||||||++|+|+|++..++.+++++++||+++|.+++++||||||+||.+|++++
T Consensus 79 ~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 79 KMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred ceeccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998766667777788999999999999999999999999999988
Q ss_pred CCCCCCCCCccccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcc
Q 010456 161 GNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (510)
Q Consensus 161 ~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ 240 (510)
+.+....+++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|+|++|+|+||||||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~ 238 (497)
T PLN02405 159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG 238 (497)
T ss_pred ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence 75443334568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhc
Q 010456 241 HYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 320 (510)
Q Consensus 241 ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmi 320 (510)
+|.+++|.||+|+|||||+||+|+.++|+||++..+.+++||||||||+||++++|+|+||+++|.+|.|||+|+||||+
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (497)
T PLN02405 239 RYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKII 318 (497)
T ss_pred hcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHH
Confidence 99999999999999999999999999999998766677899999999999988999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhcCCCCC-CCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010456 321 SGMYLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKI 399 (510)
Q Consensus 321 SG~YLGEivR~vl~~l~~~~~lF~-~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I 399 (510)
||||||||+|++|++|++++.||+ ..|++|.+||+|+|++||.|+.|++++++.+.++|++.|+++..+.+|+++||+|
T Consensus 319 SG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i 398 (497)
T PLN02405 319 SGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVEL 398 (497)
T ss_pred hhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999 7899999999999999999999999999999999999999987888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccE
Q 010456 400 CDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHV 479 (510)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v 479 (510)
|++|.+|||||+||+|+||++|+++...+ ....++++||||||+|+|||.|+++++++++++++++.+++|
T Consensus 399 ~~~V~~RAArL~Aa~iaail~k~~~~~~~---------~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v 469 (497)
T PLN02405 399 CNIVATRGARLSAAGIYGILKKLGRDTVK---------DGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESI 469 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccc---------cCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceE
Confidence 99999999999999999999999885321 011246899999999999999999999999999998777899
Q ss_pred EEEEcCCcchHHHHHHHHHhccccc
Q 010456 480 ILKVTEDGSGIGAALLAASHSSYSV 504 (510)
Q Consensus 480 ~l~~s~DgSgiGAAl~Aa~~~~~~~ 504 (510)
++++++||||+||||+||++++|.+
T Consensus 470 ~l~~a~DGSGvGAAl~AA~~~~~~~ 494 (497)
T PLN02405 470 EVEHSNDGSGIGAALLAASHSLYLE 494 (497)
T ss_pred EEEEecCchHHHHHHHHHHHhhhhc
Confidence 9999999999999999999998744
No 2
>PLN02362 hexokinase
Probab=100.00 E-value=1.9e-139 Score=1119.36 Aligned_cols=505 Identities=84% Similarity=1.254 Sum_probs=457.9
Q ss_pred CCccceeeeeehhhhhhhhhhheeeechhhhchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 010456 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRVKSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKL 80 (510)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l 80 (510)
||| +.+++++++++++|++++..++|+++...+|.++++++++|+++|.+|.++|++|+++|.+||++||+++++|++
T Consensus 1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (509)
T PLN02362 1 MGK--VAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKL 78 (509)
T ss_pred CCc--eeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 555 445666777777777777788888877778889999999999999999999999999999999999998766899
Q ss_pred ceeecccccCCCCccceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhc
Q 010456 81 KMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 81 ~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
+||||||+++|||+|+|+|||||||||||||++|+|.|++...+.+++++|+||+++|.+++++||||||+||++|++++
T Consensus 79 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~ 158 (509)
T PLN02362 79 KMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKE 158 (509)
T ss_pred ceecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988766666566667999999999999999999999999999987
Q ss_pred CCCCCCCCCccccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcc
Q 010456 161 GNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (510)
Q Consensus 161 ~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ 240 (510)
..+...+..+.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~ 238 (509)
T PLN02362 159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG 238 (509)
T ss_pred CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence 65433333467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhc
Q 010456 241 HYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 320 (510)
Q Consensus 241 ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmi 320 (510)
+|.+++|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+||++++|+|+||++||.+|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (509)
T PLN02362 239 HYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 318 (509)
T ss_pred hcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHH
Confidence 99999999999999999999999999999998766677899999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010456 321 SGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKIC 400 (510)
Q Consensus 321 SG~YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~ 400 (510)
||||||||+|+||++|++++.||+..|++|.+||+|+|++||.|+.|++++++.+.++|++.|+++.++.+|+++||+||
T Consensus 319 SG~YLGEivRlvL~~l~~~~~lF~~~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~ 398 (509)
T PLN02362 319 SGMYLGDIVRRVILRMSQESDIFGPVSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKIC 398 (509)
T ss_pred hhccHHHHHHHHHHHHHhccccccCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC-ccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccE
Q 010456 401 DVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRS-RSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHV 479 (510)
Q Consensus 401 ~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~-~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v 479 (510)
++|.+|||||+||+|+||++|+++..+........ +.....++++||||||+|+|||.|+++++++++++++++...+|
T Consensus 399 ~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v 478 (509)
T PLN02362 399 DVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHV 478 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceE
Confidence 99999999999999999999998643210000000 11112346999999999999999999999999999998888899
Q ss_pred EEEEcCCcchHHHHHHHHHhcccccccc
Q 010456 480 ILKVTEDGSGIGAALLAASHSSYSVDTV 507 (510)
Q Consensus 480 ~l~~s~DgSgiGAAl~Aa~~~~~~~~~~ 507 (510)
+|++++||||+||||+||++++|.++..
T Consensus 479 ~i~~a~DGSgvGAAl~AA~~~~~~~~~~ 506 (509)
T PLN02362 479 ILKATEDGSGIGSALLAASYSSYSVDTV 506 (509)
T ss_pred EEEEccCchHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999976333
No 3
>PLN02596 hexokinase-like
Probab=100.00 E-value=2.1e-138 Score=1105.57 Aligned_cols=483 Identities=45% Similarity=0.790 Sum_probs=451.1
Q ss_pred CCccceeeeeehhhhhhhhhhheeeechhh-hchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010456 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRV-KSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSK 79 (510)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~ 79 (510)
||| +.+++++++++++|+++ ++++||. +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+++.+|+
T Consensus 2 ~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~ 78 (490)
T PLN02596 2 MRK--EVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTT 78 (490)
T ss_pred Ccc--eeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 555 44667777777888887 8888888 6667999999999999999999999999999999999999998866689
Q ss_pred cceeecccccCCCCccceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhh
Q 010456 80 LKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEK 159 (510)
Q Consensus 80 l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (510)
++||||||+++|||+|+|+|||||||||||||++|+|.|++..+.+..+++|+||++++.+++++||||||+||++|+++
T Consensus 79 l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 79 LNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred CceecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998875556666677899999999999999999999999999998
Q ss_pred cCCCCCCCCCccccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhc
Q 010456 160 EGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLAL 239 (510)
Q Consensus 160 ~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla 239 (510)
+..+.....++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++||+|+|+||+|+||+|||||||++
T Consensus 159 ~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a 237 (490)
T PLN02596 159 HPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAG 237 (490)
T ss_pred hccccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHh
Confidence 765433333457999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhh
Q 010456 240 GHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKM 319 (510)
Q Consensus 240 ~ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKm 319 (510)
++|.+++|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+|++.++|+|+||++||++|.|||+|+||||
T Consensus 238 ~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKM 317 (490)
T PLN02596 238 GRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKL 317 (490)
T ss_pred hhcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHH
Confidence 99999999999999999999999999999999876667789999999999998889999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCC-CCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 010456 320 ISGMYLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVK 398 (510)
Q Consensus 320 iSG~YLGEivR~vl~~l~~~~~lF~-~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~ 398 (510)
+||||||||+|+||++|++++.||+ .+|++|.++|+|+|++||.|+.|++++++.+.++|++.|+++.++++|+++||+
T Consensus 318 iSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~ 397 (490)
T PLN02596 318 TSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAE 397 (490)
T ss_pred HhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999 789999999999999999999999999999999999999998789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCccc
Q 010456 399 ICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQH 478 (510)
Q Consensus 399 I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~ 478 (510)
||++|.+|||||+||+|+||++|+++.. .++++||||||+|+|||.|+++|++++++++|++...+
T Consensus 398 i~~~V~~RAArL~Aa~iaail~k~g~~~--------------~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~ 463 (490)
T PLN02596 398 VCDIVAERGARLAGAGIVGIIKKLGRIE--------------NKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDN 463 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------CCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCc
Confidence 9999999999999999999999998642 24699999999999999999999999999999887889
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 010456 479 VILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 479 v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
|++.+++||||+||||+||++++
T Consensus 464 i~~~~s~DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 464 VVIEHSHGGSGAGALFLAACQTG 486 (490)
T ss_pred EEEEEccCchhHHHHHHHHhhcc
Confidence 99999999999999999999986
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=1.2e-134 Score=1076.82 Aligned_cols=457 Identities=55% Similarity=0.930 Sum_probs=427.0
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCccceeEEEEEeCCceeEEEEE
Q 010456 35 KWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRV 114 (510)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V 114 (510)
...++..++++|+++|.+|.++|++|+++|.+||++||+++++|+++||||||.++|||+|+|.|||||||||||||++|
T Consensus 33 ~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V 112 (490)
T PLN02914 33 NAVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRV 112 (490)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEE
Confidence 34478899999999999999999999999999999999987668999999999999999999999999999999999999
Q ss_pred EEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeecccccccCCceEEEe
Q 010456 115 QLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIK 194 (510)
Q Consensus 115 ~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~ 194 (510)
+|.|++..+.+..+++++||++++.+++++||||||+||++|++++..++.++.++.+||||||||||+|+++++|+|++
T Consensus 113 ~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~ 192 (490)
T PLN02914 113 QLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMK 192 (490)
T ss_pred EecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEE
Confidence 99887656677777889999999999999999999999999999876544443456899999999999999999999999
Q ss_pred cccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCCcceeeEcccCccccccCC
Q 010456 195 WTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGL 274 (510)
Q Consensus 195 wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~ 274 (510)
|||||++++++|+||+++|++||+|++++|+|+||||||||||++++|.+++|.||+|+|||||+||+|+.++|+||++.
T Consensus 193 WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~ 272 (490)
T PLN02914 193 WTKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQ 272 (490)
T ss_pred eccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHHhhhcCCCCC-CCchhhccC
Q 010456 275 LTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEESDIFG-PASSRLSMA 353 (510)
Q Consensus 275 ~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~l~~~~~lF~-~~p~~l~~~ 353 (510)
.+..++|+||||||+|+ +++|+|+||+.+|.+|.|||+|+||||+||||||||+|++|++|++++.||+ ..|++|.+|
T Consensus 273 ~~~~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~ 351 (490)
T PLN02914 273 KSSSGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTP 351 (490)
T ss_pred CCCCceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCC
Confidence 56678999999999996 5799999999999999999999999999999999999999999999999999 789999999
Q ss_pred CCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 010456 354 FILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSG 433 (510)
Q Consensus 354 ~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~ 433 (510)
|+|+|++||+|+.|+++++..+.++|++.|++. ++.+|+++||+||++|.+|||||+||+|+||++|+++....
T Consensus 352 ~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~----- 425 (490)
T PLN02914 352 FALRTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKG----- 425 (490)
T ss_pred CccccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 999999999999999999999999999999995 89999999999999999999999999999999999874211
Q ss_pred CCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhccc
Q 010456 434 RSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSSY 502 (510)
Q Consensus 434 ~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~~ 502 (510)
....++++||||||+|+|||.|+++++++++++++++.+++|++++++||||+||||+||++++|
T Consensus 426 ----~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s~~ 490 (490)
T PLN02914 426 ----MIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNSKY 490 (490)
T ss_pred ----cCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhhcC
Confidence 00124699999999999999999999999999999887889999999999999999999999976
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-125 Score=987.69 Aligned_cols=448 Identities=49% Similarity=0.753 Sum_probs=417.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCC-CCCcceeecccccCCCCccceeEEEEEeCCceeEE
Q 010456 33 RRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEG-GSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRV 111 (510)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~-~s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV 111 (510)
..+++.++.+++++++.|.+|.++|++|+++|.+||++||+... ++.++||||||.++|+|+|+|.|||||||||||||
T Consensus 21 ~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv 100 (474)
T KOG1369|consen 21 ASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRV 100 (474)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEE
Confidence 35788899999999999999999999999999999999998544 34499999999999999999999999999999999
Q ss_pred EEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeecccccccCCceE
Q 010456 112 LRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGI 191 (510)
Q Consensus 112 ~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~ 191 (510)
++|+|+|++. .+.+..++|+||+++|.+++++|||||++|+.+|+++++.. + ..++|+||||||||+|+|+++|+
T Consensus 101 ~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~-~---~~~l~lgFTFSfP~~Q~si~~g~ 175 (474)
T KOG1369|consen 101 LLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLK-G---ASKLPLGFTFSFPCRQTSIDKGT 175 (474)
T ss_pred EEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccc-c---ccccccceEEeeeeeecccccce
Confidence 9999988765 56667778999999999999999999999999999988754 1 11299999999999999999999
Q ss_pred EEecccceecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccCCCCceEEEEeeCCcceeeEcccCcccc
Q 010456 192 LIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIK 270 (510)
Q Consensus 192 Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k 270 (510)
|++|||||++++++|+||+++|+++|+|++++ ++|+||+|||||||++++|++++|.||+|+|||||+||+|+..+|+|
T Consensus 176 L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k 255 (474)
T KOG1369|consen 176 LIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEK 255 (474)
T ss_pred EEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhh
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEeeccCCcCC--CCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHHhhhcCCCCCCCch
Q 010456 271 CQGLLTTSGGMVVNMEWGNFWS--SHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEESDIFGPASS 348 (510)
Q Consensus 271 ~~~~~~~~~~miIN~EwG~f~~--~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~l~~~~~lF~~~p~ 348 (510)
+++..... +||||||||+||+ .++|+|+||..+|++|+|||+|.||||+||||||||||++|++|.+++.||+...+
T Consensus 256 ~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~~ 334 (474)
T KOG1369|consen 256 VEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQST 334 (474)
T ss_pred cccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhccccc
Confidence 99876544 8999999999994 57999999999999999999999999999999999999999999999999993327
Q ss_pred hhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 010456 349 RLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSG 428 (510)
Q Consensus 349 ~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~ 428 (510)
+| +||.|+|+++|+|++|+++++..+.. +.+.|+++..+.+|++.|+++|+.|++|||||+||+|+||++++++.
T Consensus 335 ~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~--- 409 (474)
T KOG1369|consen 335 KL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL--- 409 (474)
T ss_pred cc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc---
Confidence 77 99999999999999999999999999 77779999899999999999999999999999999999999999963
Q ss_pred CCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhccccc
Q 010456 429 GISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSSYSV 504 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~~~~ 504 (510)
..++++||+|||+|++||.|+++|++++++|+| ...+|.+.+++||||+||||+||+++++++
T Consensus 410 -----------~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg--~~~~v~i~~s~dgSg~GAAL~Aav~~~~~~ 472 (474)
T KOG1369|consen 410 -----------SRKRVTVGVDGSLYKNHPFFREYLKEALRELLG--PSIHVKLVLSEDGSGRGAALIAAVASRLKQ 472 (474)
T ss_pred -----------ccCceEEEeccchhHcCchHHHHHHHHHHHHhC--CCceEEEEECCCCccccHHHHHHHHhhhhc
Confidence 236799999999999999999999999999999 457899999999999999999999999765
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=3.9e-122 Score=979.67 Aligned_cols=429 Identities=38% Similarity=0.608 Sum_probs=392.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCCcceeecccccCCCCccceeEEEEEeCCcee
Q 010456 39 VMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE---------GGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNF 109 (510)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~ 109 (510)
.+..+++++++|.+|.++|++|+++|.+||++||+++ ++|+++||||||+++|||+|+|+|||||||||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 3456778888888999999999999999999999876 3588999999999999999999999999999999
Q ss_pred EEEEEEEcCCcceeeeeeeeeecCCcccccc---------ChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeec
Q 010456 110 RVLRVQLGGQRSSILSSDVERQPIPPELMTG---------TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSF 180 (510)
Q Consensus 110 RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~---------~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSF 180 (510)
||++|+|.|++. .+..++++.||++++.+ ++++||||||+||.+|++++.... ...+.+||||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEee
Confidence 999999987643 33344679999999998 899999999999999999876211 12357999999999
Q ss_pred ccccccCCceEEEecccceec-----CCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccCC----CCceEEE
Q 010456 181 PVKQTSVSSGILIKWTKGFAI-----ESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHD----EDTVAAV 251 (510)
Q Consensus 181 Pv~q~si~~g~Li~wtKgF~~-----~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~----~~~~igl 251 (510)
||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||+|||||||++++|.+ ++|.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999 9999999
Q ss_pred EeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHH
Q 010456 252 IIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRR 331 (510)
Q Consensus 252 IlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~ 331 (510)
|+|||||+||+|+... . +..+.|+||||||+||+ .+|+|+||+.+|+.|.|||+|+||||+||||||||+|+
T Consensus 243 IlGTG~NacY~E~~~~-----~--~~~~~~iINtEwG~F~~-~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rl 314 (464)
T PTZ00107 243 IIGTGSNACYFEPEVS-----A--YGYAGTPINMECGNFDS-KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRR 314 (464)
T ss_pred EEeccccceeeehhhc-----c--CCCCcEEEEeeccccCC-CCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHH
Confidence 9999999999995432 1 23457999999999964 59999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010456 332 VILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLA 411 (510)
Q Consensus 332 vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~ 411 (510)
+|++|++++ .|++|.++|+|+|++||.|+.|++++++.+.++|.+.+++. ++.+|++++|+||++|++|||+|+
T Consensus 315 vl~~l~~~~-----~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L~ 388 (464)
T PTZ00107 315 LIVHLLQLK-----APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQLA 388 (464)
T ss_pred HHHHHHhcC-----CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998864 57889999999999999999999999999999999999986 788999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHH
Q 010456 412 AAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIG 491 (510)
Q Consensus 412 Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiG 491 (510)
||+|+||++++++.. .+++||||||+|+|||.|+++++++++++++++ +++|+|.+++||||+|
T Consensus 389 Aa~iaail~k~~~~~---------------~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~G 452 (464)
T PTZ00107 389 AAFIAAPAKKTRTVQ---------------GKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADDGSGKG 452 (464)
T ss_pred HHHHHHHHHHhCCCC---------------CceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccCchHHH
Confidence 999999999998632 469999999999999999999999999999877 6789999999999999
Q ss_pred HHHHHHHhcc
Q 010456 492 AALLAASHSS 501 (510)
Q Consensus 492 AAl~Aa~~~~ 501 (510)
|||+||++++
T Consensus 453 AAl~AA~~~~ 462 (464)
T PTZ00107 453 AAIIAAMVAN 462 (464)
T ss_pred HHHHHHHhcc
Confidence 9999999875
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-106 Score=823.99 Aligned_cols=445 Identities=39% Similarity=0.621 Sum_probs=412.9
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCccceeEEEEEeCCceeEEEEE
Q 010456 35 KWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRV 114 (510)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V 114 (510)
-|..+++.+.++++.|.+|.|+|.+++++|.+||++||+...+..++|+|+||..+|+|+|.|.|||||+||||||||+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 57889999999999999999999999999999999999944444599999999999999999999999999999999999
Q ss_pred EEcCCcceeeeeeeeeecCCcccccc-ChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeecccccccCCceEEE
Q 010456 115 QLGGQRSSILSSDVERQPIPPELMTG-TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILI 193 (510)
Q Consensus 115 ~l~g~~~~i~~~~~~~~~Ip~~~~~~-~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li 193 (510)
+|+|.+...+++ ++ +.+|.+.... +.++||+|||++|+.|++++..+. ...++++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~-sk-s~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQ-SK-SFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCccccc-Cc-ccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 998876655543 33 4499998876 789999999999999999987543 24589999999999999999999999
Q ss_pred ecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCCcceeeEcccCccccccC
Q 010456 194 KWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQG 273 (510)
Q Consensus 194 ~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~ 273 (510)
+|||||++++++|+||+++|+++|+++++||+|+||+|||||||+|+.|.++++.||+|+|||||+||+|+.+.|||++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCcEEEeeccCCcCCCC--CCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHHhhhcCCCCC-CCchh
Q 010456 274 L-LTTSGGMVVNMEWGNFWSSH--LPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEESDIFG-PASSR 349 (510)
Q Consensus 274 ~-~~~~~~miIN~EwG~f~~~~--lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~l~~~~~lF~-~~p~~ 349 (510)
+ .+..+.|+||+|||+|++.+ ||+|+||..+|.+|++||.|.||||+||+||||++|++|.++..++.+|. ..|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 3 46678899999999999765 99999999999999999999999999999999999999999999999998 89999
Q ss_pred hccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010456 350 LSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGG 429 (510)
Q Consensus 350 l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~ 429 (510)
+..|+.++|..+|.|+.|++++++.+...+++.|+.+ ++.++++.|+.+|++|.+|||||+|+.|+||+.++|. .
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~-~--- 402 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGA-Y--- 402 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCC-C---
Confidence 9999999999999999999999999999999889997 8899999999999999999999999999999999996 2
Q ss_pred CCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhccc
Q 010456 430 ISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSSY 502 (510)
Q Consensus 430 ~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~~ 502 (510)
++..|+.||++|++||.|++++.++++++++++.. +|.+++.+||||+|||++|+.+..-
T Consensus 403 ------------k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~ 462 (466)
T COG5026 403 ------------KAYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKP 462 (466)
T ss_pred ------------ccceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhccc
Confidence 23559999999999999999999999999996655 8999999999999999999887653
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=5e-68 Score=525.73 Aligned_cols=240 Identities=44% Similarity=0.759 Sum_probs=214.8
Q ss_pred CceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCC--CCCCCccccccccCCCCCCccchhhhcccc
Q 010456 246 DTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSS--HLPRTSYDIDLDAESPNPNDQGFEKMISGM 323 (510)
Q Consensus 246 ~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~ 323 (510)
+|.||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.||+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999988 67889999999999663 389999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhcCCCCC-CCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010456 324 YLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDV 402 (510)
Q Consensus 324 YLGEivR~vl~~l~~~~~lF~-~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~ 402 (510)
|||||+|++|+++++++.||+ ..|++|.++|+|+|++||.|++|+++++..+.++|.+.|++. ++.+|++++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEE
Q 010456 403 VTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILK 482 (510)
Q Consensus 403 V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~ 482 (510)
|++|||+|+||+|+||+.++++.... ...+++||+|||+|+|||.|++++++++++++++. ..+|+|+
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~~-----------~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~ 224 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKGR-----------PRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFV 224 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTC-----------SSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEE
T ss_pred HHHHhHHHHHHHHHHHHHhhhccccc-----------cCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEE
Confidence 99999999999999999997643221 23589999999999999999999999999999876 5789999
Q ss_pred EcCCcchHHHHHHHHHhcc
Q 010456 483 VTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 483 ~s~DgSgiGAAl~Aa~~~~ 501 (510)
+++||||+|||++||+++|
T Consensus 225 ~~~dgsg~GAAi~AA~a~r 243 (243)
T PF03727_consen 225 LSEDGSGVGAAIAAAVACR 243 (243)
T ss_dssp E-SSTHHHHHHHHHHHHHH
T ss_pred EecCchHHHHHHHHHHhcC
Confidence 9999999999999999864
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=6.5e-60 Score=455.71 Aligned_cols=202 Identities=47% Similarity=0.772 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCC--CCcceeecccccCCCCccceeEEEEEeCCceeEEEEEE
Q 010456 38 RVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGG--SKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~--s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V~ 115 (510)
+.++.++++.++|.+|.++|++|+++|++||+.||+++++ +.++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4567888999999999999999999999999999997653 24999999999999999999999999999999999999
Q ss_pred EcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeecccccccCCceEEEec
Q 010456 116 LGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKW 195 (510)
Q Consensus 116 l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~w 195 (510)
|.|++. ++..+++|+||++++.+++++||||||+||++|++++... +.+++++||||||||++|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 988753 3334567999999999999999999999999999987642 23568999999999999999999999999
Q ss_pred ccceecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccCC
Q 010456 196 TKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHD 244 (510)
Q Consensus 196 tKgF~~~~~~G~dv~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~~ 244 (510)
||||++++++|+||+++|++||+|++++ ++|+||+|||||||||++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999997 999999999999999999975
No 10
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.73 E-value=1.3e-15 Score=155.30 Aligned_cols=291 Identities=19% Similarity=0.224 Sum_probs=197.7
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeee
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (510)
+++||+|||++|++++++.|+ +.... .++.|. .+.+++.+.|++.+.++..... ....+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEeC
Confidence 689999999999999998763 44332 244442 2467888999988888765432 123589999
Q ss_pred ecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccC----CCCceEEEEee
Q 010456 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVAAVIIG 254 (510)
Q Consensus 179 SFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~----~~~~~iglIlG 254 (510)
+.|++. ++|++. ++ +.+++.+.|+.+.|++.+ ++|| .+.||+.+..++..+. +.+..+++.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~pV---~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCCe---EEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 999974 456653 44 567788899999999888 7886 7999999988888753 56789999999
Q ss_pred CCcceeeEcccCccccccCCCCCCCcEEEeec-cCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHH
Q 010456 255 TGTNACYLERTDAIIKCQGLLTTSGGMVVNME-WGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVI 333 (510)
Q Consensus 255 TGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~E-wG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl 333 (510)
||..++++.+..-+...++...+-++|.|+-. ...+|... | ... -.-.+.| .+|..+||..|-+.+|...
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~-~---~~~---C~CG~~g--clE~~~S~~al~~~~~~~~ 202 (303)
T PRK13310 132 TGVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDA-P---LRR---CGCGQKG--CIENYLSGRGFEWLYQHYY 202 (303)
T ss_pred CceEEEEEECCEEeeCCCCccccccceeecccccccccccC-C---Ccc---CCCCCcc--hHHHhhcHHHHHHHHHHhc
Confidence 99999999987777776666667788877531 00000000 0 000 0112334 8999999987754443210
Q ss_pred HHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 334 LRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAA 413 (510)
Q Consensus 334 ~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa 413 (510)
+ . .+ +.+.+.+..++ .+ ..|..+.+++++..|.
T Consensus 203 ----------~-------~--~~--------------~~~~l~~~~~~------gd--------~~a~~~~~~~~~~la~ 235 (303)
T PRK13310 203 ----------G-------E--PL--------------QAPEIIALYYQ------GD--------EQAVAHVERYLDLLAI 235 (303)
T ss_pred ----------c-------C--CC--------------CHHHHHHHHHc------CC--------HHHHHHHHHHHHHHHH
Confidence 0 0 00 11222222222 22 5677789999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEE---EcCCcchH
Q 010456 414 GIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILK---VTEDGSGI 490 (510)
Q Consensus 414 ~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~---~s~DgSgi 490 (510)
+|+.++..+++ -.|.+.|++.+ .+.|.+.+++.+++...+.. ..+.|+ +.+|.+.+
T Consensus 236 ~l~n~~~~ldP-------------------~~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~ 294 (303)
T PRK13310 236 CLGNILTIVDP-------------------HLVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHGDAGGVR 294 (303)
T ss_pred HHHHHHHHcCC-------------------CEEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccCchHHHH
Confidence 99999999976 24667888877 78899999999987543221 234444 45677888
Q ss_pred HHHHHH
Q 010456 491 GAALLA 496 (510)
Q Consensus 491 GAAl~A 496 (510)
|||.++
T Consensus 295 GAa~~~ 300 (303)
T PRK13310 295 GAAFLH 300 (303)
T ss_pred hHHHHh
Confidence 998775
No 11
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.73 E-value=1.4e-15 Score=155.88 Aligned_cols=302 Identities=20% Similarity=0.230 Sum_probs=198.0
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeee
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (510)
++||+|||++|++++++.|. +..+. .++.+ .+.+++++.|.+.|.+|+++.... ..+...+|+.++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV----GHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC----ccceEEEEEecc
Confidence 58999999999999998763 44332 23333 146889999999999999875421 123567788888
Q ss_pred cccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc----CCCCceEEEEeeC
Q 010456 180 FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY----HDEDTVAAVIIGT 255 (510)
Q Consensus 180 FPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay----~~~~~~iglIlGT 255 (510)
-|++. ++|++. |+ ...+|.+.|+.+.|++.+ ++|| .+.||+.+..++..+ .+.+..+.+.+||
T Consensus 67 G~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~~~alaE~~~g~~~~~~~~~~v~igt 133 (318)
T TIGR00744 67 GPVNR---QRGTVY-FA---VNLDWKQEPLKEKVEARV---GLPV---VVENDANAAALGEYKKGAGKGARDVICITLGT 133 (318)
T ss_pred ccccC---CCCEEE-ec---CCCCCCCCCHHHHHHHHH---CCCE---EEechHHHHHHHHHHhcccCCCCcEEEEEeCC
Confidence 88873 456643 33 223577888989998877 7886 899999999888764 3567899999999
Q ss_pred CcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHH
Q 010456 256 GTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILR 335 (510)
Q Consensus 256 GtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~ 335 (510)
|.+++++.+..-+...++...+-++|+++-+ |.. .. .-.+.| .+|.++|+..|-+..+.....
T Consensus 134 GiG~giv~~G~~~~G~~g~agEiGh~~v~~~-g~~------~C--------~cG~~g--clE~~~s~~al~~~~~~~~~~ 196 (318)
T TIGR00744 134 GLGGGIIINGEIRHGHNGVGAEIGHIRMVPD-GRL------LC--------NCGKQG--CIETYASATGLVRYAKRANAK 196 (318)
T ss_pred ccEEEEEECCEEeecCCCCCcccCceEeCCC-CCc------cc--------CCCCcc--hHHHHhCHHHHHHHHHHHhcc
Confidence 9999999876666665555555566665431 000 00 001333 899999998875544431110
Q ss_pred hhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 336 MSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGI 415 (510)
Q Consensus 336 l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~i 415 (510)
. ..++.+ .....+.....+.+.+..++ .+ ..|..+++++++..+.+|
T Consensus 197 ~--------~~~~~~-----------~~~~~~~~~~~~~i~~~~~~------gD--------~~a~~i~~~~~~~L~~~i 243 (318)
T TIGR00744 197 P--------ERAEVL-----------LALGDGDGISAKHVFVAARQ------GD--------PVAVDSYREVARWAGAGL 243 (318)
T ss_pred c--------cccchh-----------hcccccCCCCHHHHHHHHHC------CC--------HHHHHHHHHHHHHHHHHH
Confidence 0 000000 00000001122333333332 23 567789999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEE---EcCCcchHHH
Q 010456 416 VGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILK---VTEDGSGIGA 492 (510)
Q Consensus 416 aaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~---~s~DgSgiGA 492 (510)
+.++..+++ -.|.+.|++.+..+.|.+.+++.+++..-+.....+.+. +.++...+||
T Consensus 244 ~~~~~~~dP-------------------~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Ga 304 (318)
T TIGR00744 244 ADLASLFNP-------------------SAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGA 304 (318)
T ss_pred HHHHHHhCC-------------------CEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHH
Confidence 999998865 247789999988899999999999876432222234444 4566778899
Q ss_pred HHHHH
Q 010456 493 ALLAA 497 (510)
Q Consensus 493 Al~Aa 497 (510)
|.++.
T Consensus 305 a~~~~ 309 (318)
T TIGR00744 305 ADLAR 309 (318)
T ss_pred HHHHH
Confidence 87753
No 12
>PRK09698 D-allose kinase; Provisional
Probab=99.71 E-value=4.5e-15 Score=151.30 Aligned_cols=286 Identities=16% Similarity=0.191 Sum_probs=192.4
Q ss_pred ceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccce
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELG 175 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG 175 (510)
.+.++++|+|||++|++++++.|. ++... .++.|.. .+.+ .++.+++.|.+++++.. .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHCE--KKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEEE--EeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 467999999999999999999763 44332 2444432 1333 49999999999998653 1346788
Q ss_pred eeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccC---CCCceEEEE
Q 010456 176 FTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH---DEDTVAAVI 252 (510)
Q Consensus 176 fTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~---~~~~~iglI 252 (510)
+.++.|++. +.|+++... .+..+++.+.|+.+.|++.+ ++|+ .+.||..+..++..+. +++..+.+.
T Consensus 67 ia~pG~vd~---~~g~i~~~~-~~~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVISTP-NLPLTALDLYDLADKLENTL---NCPV---FFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEecC-CCCccccccCCHHHHHHHHh---CCCE---EEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 888888873 456655443 33333688899999999888 7886 8899999988876532 456789999
Q ss_pred eeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHH
Q 010456 253 IGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRV 332 (510)
Q Consensus 253 lGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~v 332 (510)
+|||..++++.+..-+....+...+-++|.++-... . -.--++| .+|.++|+..|-+..+..
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~~--------~--------C~CG~~g--clE~~~S~~al~~~~~~~ 198 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQ--------H--------CGCGNPG--CLETNCSGMALRRWYEQQ 198 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeCCCc--------c--------cCCCCcc--chHhhcCHHHHHHHHHHh
Confidence 999999999988776666666556667777653100 0 0112455 799999998764332210
Q ss_pred HHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 333 ILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAA 412 (510)
Q Consensus 333 l~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~A 412 (510)
+. + . +. ..+++. . .+. .+.+++++.+|
T Consensus 199 ----------~~--------~--~--------------~~---~~l~~~-~----~~~-----------~~~~~~~~~la 225 (302)
T PRK09698 199 ----------PR--------D--Y--------------PL---SDLFVH-A----GDH-----------PFIQSLLENLA 225 (302)
T ss_pred ----------cC--------C--C--------------CH---HHHHHH-c----CCH-----------HHHHHHHHHHH
Confidence 00 0 0 01 111211 1 110 24567788899
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC-CCCcccEEEE---EcCCcc
Q 010456 413 AGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG-DDIAQHVILK---VTEDGS 488 (510)
Q Consensus 413 a~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~-~~~~~~v~l~---~s~DgS 488 (510)
.+|+.++..+++ -.|.+.|++.+..+.|.+.+++.+++.+. +.....+.|. +.+|..
T Consensus 226 ~~l~~li~~ldP-------------------~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~ 286 (302)
T PRK09698 226 RAIATSINLFDP-------------------DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNG 286 (302)
T ss_pred HHHHHHHHHhCC-------------------CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCccc
Confidence 999999888876 35678999988888889999999988653 2112244455 356677
Q ss_pred hHHHHHHHH
Q 010456 489 GIGAALLAA 497 (510)
Q Consensus 489 giGAAl~Aa 497 (510)
.+|||.++.
T Consensus 287 ~~GAa~~~~ 295 (302)
T PRK09698 287 AQGAAILAH 295 (302)
T ss_pred HHhHHHHHH
Confidence 899998753
No 13
>PRK09557 fructokinase; Reviewed
Probab=99.66 E-value=3e-14 Score=145.31 Aligned_cols=291 Identities=21% Similarity=0.263 Sum_probs=189.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeee
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (510)
+|++|+|||++|++++++.|+ +..+. .++.|. .+.+++.+.|++.+.++..... ....+|+++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 789999999999999998763 44332 244442 1457788888888888765432 135688888
Q ss_pred ecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc----CCCCceEEEEee
Q 010456 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY----HDEDTVAAVIIG 254 (510)
Q Consensus 179 SFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay----~~~~~~iglIlG 254 (510)
+.|++. ++|++..... ..+.+.++.+.|++.+ ++|| .+.||+.+..++..+ .+.+..+.+.+|
T Consensus 65 pG~vd~---~~g~i~~~~~----~~~~~~~l~~~l~~~~---~~pv---~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISP---YTGLVKNANS----TWLNGQPLDKDLSARL---NREV---RLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcC---CCCeEEecCC----ccccCCCHHHHHHHHH---CCCE---EEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 888863 4566554322 2125788989999888 7777 789999999988864 245778999999
Q ss_pred CCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHH
Q 010456 255 TGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVIL 334 (510)
Q Consensus 255 TGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~ 334 (510)
||..++.+.+..-+....+...+-++|.|+. ..- . ... |.....-.--+.| .+|..+|+..|-+..+...
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~--~~~--~--~~~-~~~g~~c~cG~~G--clE~~~S~~al~~~~~~~~- 201 (301)
T PRK09557 132 TGCGAGVAINGRVHIGGNGIAGEWGHNPLPW--MDE--D--ELR-YRNEVPCYCGKQG--CIETFISGTGFATDYRRLS- 201 (301)
T ss_pred cceEEEEEECCEEEecCCCCCcccCceeccc--ccc--c--ccc-cCCCCcCCCCCCC--EEeEEEcHHHHHHHHHHhc-
Confidence 9999999987666666555555666666642 000 0 000 0000000011234 7999999988755443210
Q ss_pred HhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 335 RMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAG 414 (510)
Q Consensus 335 ~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~ 414 (510)
. . .+ +.+.+.+..++ .+ ..+..+.+++++..|.+
T Consensus 202 ---------~---~------~~--------------~~~~l~~~~~~------gd--------~~a~~~l~~~~~~La~~ 235 (301)
T PRK09557 202 ---------G---K------AL--------------KGSEIIRLVEE------GD--------PVAELAFRRYEDRLAKS 235 (301)
T ss_pred ---------c---C------CC--------------CHHHHHHHHHc------CC--------HHHHHHHHHHHHHHHHH
Confidence 0 0 01 11222222222 22 56778999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEE---EcCCcchHH
Q 010456 415 IVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILK---VTEDGSGIG 491 (510)
Q Consensus 415 iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~---~s~DgSgiG 491 (510)
|+.++..+++ -.|.+.|++.. .+.|.+.+++.+++...+... .+.++ +.+|...+|
T Consensus 236 l~~l~~~ldP-------------------~~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~G 294 (301)
T PRK09557 236 LAHVINILDP-------------------DVIVLGGGMSN-VDRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRG 294 (301)
T ss_pred HHHHHHHhCC-------------------CEEEEcCcccc-hHHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhh
Confidence 9999988876 35668888887 477888888888876432211 33344 466778899
Q ss_pred HHHHH
Q 010456 492 AALLA 496 (510)
Q Consensus 492 AAl~A 496 (510)
||.++
T Consensus 295 Aa~~~ 299 (301)
T PRK09557 295 AAWLW 299 (301)
T ss_pred hhHhh
Confidence 98754
No 14
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.64 E-value=9.1e-14 Score=141.04 Aligned_cols=278 Identities=18% Similarity=0.201 Sum_probs=187.2
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeee
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (510)
++++|+|||++|++++++.|. +.... .++.|.. .+.+++.+.|++.+.++... ...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQRR--QIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999763 44322 2455432 24677888888888877531 24689999
Q ss_pred ecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc---CCCCceEEEEeeC
Q 010456 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY---HDEDTVAAVIIGT 255 (510)
Q Consensus 179 SFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay---~~~~~~iglIlGT 255 (510)
+.|++ ++....+ ...+.++|.+.|+.+.|++.+ ++|| .+.||+.+..++..+ .+.+..+.+-+||
T Consensus 64 pG~vd-----~~~~~~~-~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIN-----DGILTAL-NPHNLGGLLHFPLVQTLEQLT---DLPT---IALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred ccccc-----CCeeEEe-cCCCCccccCCChHHHHHHHh---CCCE---EEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 99997 2332211 112345678899999998877 7876 899999999988864 2567799999999
Q ss_pred CcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHH
Q 010456 256 GTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILR 335 (510)
Q Consensus 256 GtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~ 335 (510)
|..++++.+..-+...++..++-++|.|+-+ | +++ .-.++| .+|.++|+..|-+..+.
T Consensus 132 GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~-g-------~~c--------~CG~~G--clE~~~S~~al~~~~~~---- 189 (291)
T PRK05082 132 GVGGGIVLNGKLLTGPGGLAGHIGHTLADPH-G-------PVC--------GCGRRG--CVEAIASGRAIAAAAQG---- 189 (291)
T ss_pred CcceEEEECCEEeeCCCCccccccceEecCC-C-------CCC--------CCCCcC--chhhhcCHHHHHHHHHH----
Confidence 9999999987666666665566677776431 1 001 112445 89999999877332110
Q ss_pred hhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 336 MSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGI 415 (510)
Q Consensus 336 l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~i 415 (510)
+ +. .+ +.+.+.+.+.+ .+ ..|..+.+++++..|.+|
T Consensus 190 ~------~~----------~~--------------~~~~i~~~~~~------gd--------~~a~~~~~~~~~~la~~l 225 (291)
T PRK05082 190 W------LA----------GC--------------DAKTIFERAGQ------GD--------EQAQALINRSAQAIARLI 225 (291)
T ss_pred h------hc----------CC--------------CHHHHHHHHHc------CC--------HHHHHHHHHHHHHHHHHH
Confidence 0 00 00 11222222222 22 456778999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEE---cCCcchHHH
Q 010456 416 VGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKV---TEDGSGIGA 492 (510)
Q Consensus 416 aaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~---s~DgSgiGA 492 (510)
+.++..+++ -.|.+.|++.. .+.|.+.+++.++++... ..+.+.. .+|.+.+||
T Consensus 226 ~~l~~~~dp-------------------e~IvlgG~~~~-~~~~~~~i~~~l~~~~~~---~~~~i~~s~~~~~~~~~GA 282 (291)
T PRK05082 226 ADLKATLDC-------------------QCVVLGGSVGL-AEGYLELVQAYLAQEPAI---YHVPLLAAHYRHDAGLLGA 282 (291)
T ss_pred HHHHHHhCC-------------------CEEEEcCcccc-HHHHHHHHHHHHHhcccc---cCCeEEECccCCchhhhhH
Confidence 999999976 24667888654 678889999999875221 1344553 456778899
Q ss_pred HHHH
Q 010456 493 ALLA 496 (510)
Q Consensus 493 Al~A 496 (510)
|.++
T Consensus 283 a~~~ 286 (291)
T PRK05082 283 ALWA 286 (291)
T ss_pred HHHh
Confidence 8765
No 15
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.3e-13 Score=139.50 Aligned_cols=295 Identities=23% Similarity=0.315 Sum_probs=202.4
Q ss_pred cceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 010456 95 EKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRREL 174 (510)
Q Consensus 95 E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~l 174 (510)
+...+++||+|||+++++++++.|+ +.... ..+.|... ..+++.+-|.+.+.++++.+. . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~~--~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLRE--RIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEEE--EEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4557999999999999999999774 33322 24444432 125788899999999887653 1 23567
Q ss_pred eeeeecccccccCCceE-EEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccC----CCCceE
Q 010456 175 GFTFSFPVKQTSVSSGI-LIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVA 249 (510)
Q Consensus 175 GfTFSFPv~q~si~~g~-Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~----~~~~~i 249 (510)
|+.++.|.. .+.+. +..+. ....+.+-|+.+.|++.+ ++|| .+-||+.+..++.++. +.+..+
T Consensus 69 GIgi~~pg~---~~~~~~~~~~~---~~~~~~~~~l~~~L~~~~---~~Pv---~veNDan~aalaE~~~g~~~~~~~~~ 136 (314)
T COG1940 69 GIGIPGPGD---VDNGTVIVPAP---NLGWWNGVDLAEELEARL---GLPV---FVENDANAAALAEAWFGAGRGIDDVV 136 (314)
T ss_pred EEEecccee---ccCCcEEeecC---CCCccccccHHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCCCCCCCCEE
Confidence 777777776 34454 44444 445566788999999999 7888 7889999999999974 457899
Q ss_pred EEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHH
Q 010456 250 AVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIV 329 (510)
Q Consensus 250 glIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEiv 329 (510)
.+.+|||..++++.+..-+...++...+.+.|+++-.+. -.-.+.| .+|...|+..|-+..
T Consensus 137 ~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~-----------------c~cG~~G--clE~~as~~al~~~~ 197 (314)
T COG1940 137 YITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE-----------------CGCGRRG--CLETYASGRAILRRA 197 (314)
T ss_pred EEEEccceeEEEEECCEEeecCCCccccccceEECCCCc-----------------cCCCCCC--chHHhccHHHHHHHH
Confidence 999999999999998776666666555667787776332 0122455 889999999886543
Q ss_pred HHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010456 330 RRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAAR 409 (510)
Q Consensus 330 R~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~ 409 (510)
.... +..... . +.+.+.+...+ .+ ..+..+.++++.
T Consensus 198 ---~~~~----------~~~~~~---~--------------~~~~i~~~a~~------gd--------~~a~~~~~~~~~ 233 (314)
T COG1940 198 ---AEAL----------ESEAGE---L--------------TAKDIFELAAA------GD--------PLAKEVIERAAD 233 (314)
T ss_pred ---Hhhc----------cccccC---c--------------CHHHHHHHHHc------CC--------HHHHHHHHHHHH
Confidence 0000 000000 0 11222222222 22 567789999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEe-eEeeecHhHHHHHHHHHHhhhCCC-CcccEE-EEEc-C
Q 010456 410 LAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEG-GLYSSYTLFREYLHEALTDILGDD-IAQHVI-LKVT-E 485 (510)
Q Consensus 410 L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdG-sl~~~~p~f~~~l~~~l~~l~~~~-~~~~v~-l~~s-~ 485 (510)
..|.+|+.++..+++ -.|.+.| ++-...+.+.+.+++.+....... ....+. -.+. .
T Consensus 234 ~la~~ianl~~~~~P-------------------~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (314)
T COG1940 234 YLARGLANLINLLDP-------------------EVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGN 294 (314)
T ss_pred HHHHHHHHHHHhcCC-------------------CeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccc
Confidence 999999999999876 2455777 888888999999999888765431 111111 2233 7
Q ss_pred CcchHHHHHHHHH
Q 010456 486 DGSGIGAALLAAS 498 (510)
Q Consensus 486 DgSgiGAAl~Aa~ 498 (510)
+.+.+|||+++.-
T Consensus 295 ~a~~~ga~~~~~~ 307 (314)
T COG1940 295 DAGLIGAALLALL 307 (314)
T ss_pred cccchhHHHHHHH
Confidence 8999999988754
No 16
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.48 E-value=6.1e-12 Score=125.66 Aligned_cols=239 Identities=16% Similarity=0.161 Sum_probs=160.3
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeee
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (510)
|+++|+|||++|++++++.++ ++.+. +++.|.. +.+++.+.+.+.+.++..... ....+|+.+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWHK--RVPTPRE----DYPQLLQILRDLTEEADTYCG--------VQGSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEEE--EecCCCc----CHHHHHHHHHHHHHHHHhhcC--------CCceEEEEe
Confidence 799999999999999998763 44332 3555531 356788888888877743221 124688888
Q ss_pred ecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccC----CCCceEEEEee
Q 010456 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVAAVIIG 254 (510)
Q Consensus 179 SFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~----~~~~~iglIlG 254 (510)
+-|++. +.|++ .++ +.+++.+.|+.+.|++.+ ++|| .+.||+.+..++..+. +.+..+++.+|
T Consensus 65 pG~vd~---~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~pV---~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 65 PGLPNA---DDGTV-FTA---NVPSAMGQPLQADLSRLI---QREV---RIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred cCcEEC---CCCEE-Ecc---CCCcccCCChHHHHHHHH---CCCE---EEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 888873 45664 455 566778899999999888 7786 8999999999988753 46889999999
Q ss_pred CCcceeeEcccCccccccCCCCCCCcEEEe--eccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHH
Q 010456 255 TGTNACYLERTDAIIKCQGLLTTSGGMVVN--MEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRV 332 (510)
Q Consensus 255 TGtNa~Y~e~~~~I~k~~~~~~~~~~miIN--~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~v 332 (510)
||..++.+.+..-+....+...+-++|.+. .+- .++. .++.. .-.-.+.| .+|.++||.-|.+..+.
T Consensus 132 tGiG~giv~~G~l~~G~~g~AGEiGh~~v~~~~~~-~~~~------~~~~~-~c~cG~~G--clE~~~S~~ai~~~~~~- 200 (256)
T PRK13311 132 TGVGGGLIVNGSIVSGRNHITGEFGHFRLPVDALD-ILGA------DIPRV-PCGCGHRG--CIENYISGRGFEWMYSH- 200 (256)
T ss_pred cCeEEEEEECCEEecCCCCCCccceeEEeccCccc-cccc------CCCCC-cCCCCCcc--chhheecHHHHHHHHHH-
Confidence 999999999877666666666677778773 110 0000 00000 00112344 89999999877443321
Q ss_pred HHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 333 ILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAA 412 (510)
Q Consensus 333 l~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~A 412 (510)
+. . . .+ +.+.+.+...+ .+ .+|..++++++++.|
T Consensus 201 ---~~------~--------~-~~--------------~~~~l~~~~~~------gd--------~~a~~~~~~~~~~la 234 (256)
T PRK13311 201 ---FY------Q--------H-TL--------------PATDIIAHYAA------GE--------PKAVAHVERFMDVLA 234 (256)
T ss_pred ---hc------c--------C-CC--------------CHHHHHHHHHc------CC--------HHHHHHHHHHHHHHH
Confidence 10 0 0 00 12222223322 23 677889999999999
Q ss_pred HHHHHHHHHhcc
Q 010456 413 AGIVGILKKIGR 424 (510)
Q Consensus 413 a~iaaIl~~~~~ 424 (510)
.+|+.++..++.
T Consensus 235 ~~i~nl~~~~~~ 246 (256)
T PRK13311 235 VCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHhCC
Confidence 999999998875
No 17
>PRK12408 glucokinase; Provisional
Probab=99.46 E-value=3.6e-12 Score=132.42 Aligned_cols=297 Identities=16% Similarity=0.115 Sum_probs=169.1
Q ss_pred CCccce-eEEEEEeCCceeEEEEEEEcCCc---ceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCC
Q 010456 92 TGSEKG-IYYALDLGGTNFRVLRVQLGGQR---SSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPP 167 (510)
Q Consensus 92 tG~E~G-~~LalDlGGTN~RV~~V~l~g~~---~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~ 167 (510)
++-|++ .||++|+||||.|+++|+-++.. ..+... ++++-+ ..+.+.+ -|.+|+++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~--~~~~t~------~~~~~~~----~i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDY--RTYRCA------DYPSLAA----ILADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccce--eEecCC------CccCHHH----HHHHHHhc-C------
Confidence 455566 39999999999999999764431 011111 122211 1122333 35566554 1
Q ss_pred CCccccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccC---
Q 010456 168 PIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYH--- 243 (510)
Q Consensus 168 ~~~~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~--- 243 (510)
.+...+|+.++.| + .++|++. .+ +++ +. .+.+.|++.+ +++ | .|+||..+..++..+.
T Consensus 71 -~~~~~igIg~pG~-~---~~~g~v~-~~---nl~-w~--~~~~~l~~~~---~~~~V---~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 71 -APVRRGVIASAGY-A---LDDGRVI-TA---NLP-WT--LSPEQIRAQL---GLQAV---HLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred -CCcCEEEEEecCC-c---eECCEEE-ec---CCC-Cc--cCHHHHHHHc---CCCeE---EEeecHHHHHcccccCCHh
Confidence 1245688888887 3 2367776 33 332 32 2345666555 663 6 8999999999999755
Q ss_pred ----------CC-CceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCcccccc-ccCCCCC
Q 010456 244 ----------DE-DTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDL-DAESPNP 311 (510)
Q Consensus 244 ----------~~-~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~l-D~~S~nP 311 (510)
+. ...+.+.+|||..++.+.+.. .+.-..=.|+|...- .|.++....+ ...-...
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~~--~~~~~~~~~l~~~~~~~~ 199 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAAL--AAASELEMQLLQHLLRTR 199 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCccccccC--CCCCHHHHHHHHHHHhhC
Confidence 22 578899999999999997543 122344566665421 1111110000 0000112
Q ss_pred CccchhhhccccchHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHH
Q 010456 312 NDQGFEKMISGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLK 391 (510)
Q Consensus 312 G~q~fEKmiSG~YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~ 391 (510)
|.-.+|..+||+-|..+.|.....- +. .+..++. ..+.+...+ ..+
T Consensus 200 ~~~~~E~~~Sg~gL~~~~~~~~~~~---~~----------~~~~~~~--------------~~v~~~a~~-----ggD-- 245 (336)
T PRK12408 200 THVPIEHVLSGPGLLNLYRALCALR---GA----------TPVHASP--------------AAITAAALA-----GDD-- 245 (336)
T ss_pred CceeHhheecHHHHHHHHHHHHhhc---CC----------CcccCCH--------------HHHHHHHHh-----CCC--
Confidence 2236999999999988877652210 00 0000111 111111111 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeee-cHhHHHH--HHHHHH
Q 010456 392 VRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSS-YTLFREY--LHEALT 468 (510)
Q Consensus 392 d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~-~p~f~~~--l~~~l~ 468 (510)
.+|..+.++.+++.|.+|+.+...+++. .-|.+.|++-.. .+.|.+. +++.++
T Consensus 246 ------~~A~~~~~~~~~~La~~i~nl~~~ldPe------------------~GIvIGGGIs~~~~~~l~~~~f~~~~~~ 301 (336)
T PRK12408 246 ------ALAHEALQVFCGFLGSVVGDMALAYGAR------------------GGVYLAGGILPQIADFLARSDFVERFLN 301 (336)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------ceEEEECchhHhHHhhhcCHHHHHHHhc
Confidence 6777889999999999999999998762 226688999765 3444443 666666
Q ss_pred hhhCCCC--cccEEEEEcCCcchHHHHHHH
Q 010456 469 DILGDDI--AQHVILKVTEDGSGIGAALLA 496 (510)
Q Consensus 469 ~l~~~~~--~~~v~l~~s~DgSgiGAAl~A 496 (510)
+..-... ...|.+....|.+.+|||.++
T Consensus 302 ~~~~~~~~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 302 KGPMRPALEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred cCchhhHhcCCCEEEEeCCChHHHHHHHHH
Confidence 5321111 223555444588899998543
No 18
>PRK00292 glk glucokinase; Provisional
Probab=99.45 E-value=1.7e-11 Score=126.08 Aligned_cols=286 Identities=17% Similarity=0.186 Sum_probs=163.6
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhh-cCCCCCCCCCcccccee
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEK-EGNGSEPPPIRRRELGF 176 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~-~~~~~~~~~~~~l~lGf 176 (510)
.+|++|+||||+|++++++.+. .+... +.++.+. ++.+.+.|.+|+++ .. .+...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~--~~~~~~~----------~~~~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQI--KTYATAD----------YPSLEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeee--EEEecCC----------CCCHHHHHHHHHHhccC-------CCCceEEE
Confidence 4799999999999999987442 22322 2243331 12244455566654 21 12467899
Q ss_pred eeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccC------------
Q 010456 177 TFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYH------------ 243 (510)
Q Consensus 177 TFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~------------ 243 (510)
.++.|++.. + +..+ +.+ +.. + .+.|++.+ ++| | .|.||..+..++..+.
T Consensus 62 g~pG~vd~~-----~-i~~~---n~~-w~~-~-~~~l~~~~---~~p~v---~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 62 AIAGPVDGD-----E-VRMT---NHH-WAF-S-IAAMKQEL---GLDHL---LLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEeCcccCC-----E-EEec---CCC-ccc-C-HHHHHHHh---CCCeE---EEEecHHHHHcccccCCHhheeEeCCCC
Confidence 999999742 2 2222 221 322 2 36666665 664 6 8999999999998641
Q ss_pred C--CCceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCcccc----ccccCCCCCCccchh
Q 010456 244 D--EDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDI----DLDAESPNPNDQGFE 317 (510)
Q Consensus 244 ~--~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~----~lD~~S~nPG~q~fE 317 (510)
+ .+..+.+.+|||..++.+.+. ..+ ....-.|+|...- .|.++-.. .+ ...- |.-.+|
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g--~~g---------~~g~agE~GH~~~--~~~~~~~~~~~~~~-c~~~--~~gclE 187 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV--DGR---------WIVLPGEGGHVDF--APRSEEEAQILQYL-RAEF--GHVSAE 187 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec--CCc---------eEEccCCcccccC--CCCChHHHHHHHHH-HHhc--CCceeE
Confidence 1 267899999999999999753 222 2234455554410 01110000 00 0111 223799
Q ss_pred hhccccchHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 010456 318 KMISGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIV 397 (510)
Q Consensus 318 KmiSG~YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~ 397 (510)
..+||.-|.++.|..... .+. ++ ..+ +.+.+.+..++ .-+
T Consensus 188 ~~~Sg~~L~~~~~~~~~~---~~~-----~~-----~~~--------------~~~~i~~~a~~-----gdd-------- 227 (316)
T PRK00292 188 RVLSGPGLVNLYRAICKA---DGR-----EP-----ELL--------------TPADITERALA-----GSC-------- 227 (316)
T ss_pred eeecHHhHHHHHHHHHhh---cCC-----Cc-----ccC--------------CHHHHHHHHHh-----CCC--------
Confidence 999999997765543211 000 00 001 11122222221 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEee-ecHhHHH-HHHHHHHhh--hCC
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYS-SYTLFRE-YLHEALTDI--LGD 473 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~-~~p~f~~-~l~~~l~~l--~~~ 473 (510)
.+|..+.++++++.|.+|+.++..+++. -.|.+.|++.. ..+.|.+ .+.+.+++. ...
T Consensus 228 ~~A~~~~~~~~~~lg~~i~~l~~~~~P~------------------~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (316)
T PRK00292 228 PLCRRTLSLFCVILGRVAGNLALTLGAR------------------GGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSA 289 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------ceEEEeCchHHhHHhhhccHHHHHHHhcCCChhh
Confidence 5677899999999999999999998762 13457777774 3344444 344444431 110
Q ss_pred C-CcccEEEEEcCCcchHHHHHHH
Q 010456 474 D-IAQHVILKVTEDGSGIGAALLA 496 (510)
Q Consensus 474 ~-~~~~v~l~~s~DgSgiGAAl~A 496 (510)
- ....|.+.+.+|.+.+|||.++
T Consensus 290 ~~~~~~i~~~~~~~agl~GAa~~~ 313 (316)
T PRK00292 290 YLADIPVYVITHPQPGLLGAGAYL 313 (316)
T ss_pred HHhcCCEEEEcCCChHHHHHHHHH
Confidence 0 1245667788899999998765
No 19
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.15 E-value=2.9e-10 Score=106.76 Aligned_cols=141 Identities=24% Similarity=0.409 Sum_probs=110.3
Q ss_pred EEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeec
Q 010456 101 ALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSF 180 (510)
Q Consensus 101 alDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSF 180 (510)
+||+|+|++|++++++.|+ ++.+. .+++| .+.+++.+.+.+.+.+++..... . .+|+.++-
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6899999999999999773 55443 35555 36789999999999999887641 2 78888899
Q ss_pred ccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc----CCCCceEEEEeeCC
Q 010456 181 PVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY----HDEDTVAAVIIGTG 256 (510)
Q Consensus 181 Pv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay----~~~~~~iglIlGTG 256 (510)
|++. ++|.++.... +++.+.|+.+.|++.+ ++|| .+.||+.+..++..+ .+.+..+.+-+|||
T Consensus 62 ~v~~---~~g~i~~~~~----~~~~~~~l~~~l~~~~---~~pv---~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDS---EKGRIISSPN----PGWENIPLKEELEERF---GVPV---IIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEET---TTTEEEECSS----GTGTTCEHHHHHHHHH---TSEE---EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcC---CCCeEEecCC----CCcccCCHHHHhhccc---ceEE---EEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 9985 3466666542 6788899999999988 7777 899999999888875 24578899999999
Q ss_pred cceeeEcccCccccccC
Q 010456 257 TNACYLERTDAIIKCQG 273 (510)
Q Consensus 257 tNa~Y~e~~~~I~k~~~ 273 (510)
..++++.+..-+...++
T Consensus 129 iG~~ii~~g~i~~G~~~ 145 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNG 145 (179)
T ss_dssp EEEEEEETTEEETTTTS
T ss_pred CCcceecccccccCCCc
Confidence 99999987655544433
No 20
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.12 E-value=2e-09 Score=121.03 Aligned_cols=291 Identities=17% Similarity=0.171 Sum_probs=163.8
Q ss_pred eeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccccee
Q 010456 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (510)
|-+|++|+||||.|+++++-.| .+... ..+|... |+.+.+.|.+|++..+. .....+|+
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g---~i~~~----~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPG---EITQI----RVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecCCC---cccce----eEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEEE
Confidence 4599999999999999995333 23322 1223311 24455666777765421 12467999
Q ss_pred eeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcc--------cc----CC
Q 010456 177 TFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG--------HY----HD 244 (510)
Q Consensus 177 TFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~--------ay----~~ 244 (510)
.++.|++.. + +..+ +++ |. .++ +.|++.+ |++ ++.|+||..+..++. .+ .+
T Consensus 77 g~pGpVd~~-----~-~~~~---nl~-w~-~~~-~~l~~~~---g~~--~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~ 139 (638)
T PRK14101 77 AIANPVDGD-----Q-VRMT---NHD-WS-FSI-EATRRAL---GFD--TLLVVNDFTALAMALPGLTDAQRVQVGGGTR 139 (638)
T ss_pred EEecCccCC-----e-eeec---CCC-cE-ecH-HHHHHHc---CCC--eEEEEchHHHHHcCCccCCHHHeEEeCCCCC
Confidence 999999842 1 1122 221 22 233 5566555 553 458999999999994 22 12
Q ss_pred CCceEEEEeeCCccee---eE-cccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCcccccc-ccCCCCCCccchhhh
Q 010456 245 EDTVAAVIIGTGTNAC---YL-ERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDL-DAESPNPNDQGFEKM 319 (510)
Q Consensus 245 ~~~~iglIlGTGtNa~---Y~-e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~l-D~~S~nPG~q~fEKm 319 (510)
.+..+.+++||||..+ .+ .+. +.++.-.|+|...- .|.++-...+ .....+.|.-.+|..
T Consensus 140 ~~~~~~~~lGtGTGlG~a~lv~~~g-------------~~~~~g~E~GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E~~ 204 (638)
T PRK14101 140 RQNSVIGLLGPGTGLGVSGLIPADD-------------RWIALGSEGGHASF--APQDEREDLVLQYARKKYPHVSFERV 204 (638)
T ss_pred CCCCcEEEEECCccceeeEEEecCC-------------eeEECCCCccccCC--CCCCHHHHHHHHHHHHhcCcceeeee
Confidence 3456789987765554 32 221 11333458877631 1222110000 000112233468999
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010456 320 ISGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKI 399 (510)
Q Consensus 320 iSG~YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I 399 (510)
+||.-|..+.|...... +. + .+-.++. ..+.+...+ .+ .+
T Consensus 205 ~Sg~gL~~~~~~~~~~~---~~-----~----~~~~~~~--------------~~i~~~a~~------gd--------~~ 244 (638)
T PRK14101 205 CAGPGMEIIYRALAARD---KK-----R----VAANVDT--------------AEIVERAHA------GD--------AL 244 (638)
T ss_pred cchhhHHHHHHHHHhhc---CC-----C----CcCcCCH--------------HHHHHHHHC------CC--------HH
Confidence 99999998887643211 00 0 0000111 122222221 23 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeec-HhHHH-HHHHHHHhhhCCC---
Q 010456 400 CDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSY-TLFRE-YLHEALTDILGDD--- 474 (510)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~-p~f~~-~l~~~l~~l~~~~--- 474 (510)
|..+.++.+++.|.++..+...++. +-.|.+.||+-.+. +.|.+ .+.++++.. |+-
T Consensus 245 A~~~~~~~~~~lg~~~~nl~~~~~~------------------p~~vvigGGIs~~~~~~l~~~~f~~~f~~k-g~~~~~ 305 (638)
T PRK14101 245 ALEAVECFCAILGTFAGNLALTLGA------------------LGGIYIGGGVVPKLGELFTRSSFRARFEAK-GRFEAY 305 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC------------------CCcEEEeCcHHHHHHHHcChHHHHHHHHhC-CChHHH
Confidence 8889999999999999999998863 12456899997553 22221 333333321 110
Q ss_pred -CcccEEEEEcCCcchHHHHHHHHHh
Q 010456 475 -IAQHVILKVTEDGSGIGAALLAASH 499 (510)
Q Consensus 475 -~~~~v~l~~s~DgSgiGAAl~Aa~~ 499 (510)
..-.|.+...++-+.+|||-.+.-+
T Consensus 306 ~~~ipv~~i~~~~~~l~Gaa~~~~~~ 331 (638)
T PRK14101 306 LANIPTYLITAEYPAFLGVSAILAEQ 331 (638)
T ss_pred HhcCCEEEEeCCChhHHHHHHHHHHH
Confidence 1246889999999999997655433
No 21
>PTZ00288 glucokinase 1; Provisional
Probab=98.93 E-value=2.1e-07 Score=98.88 Aligned_cols=332 Identities=15% Similarity=0.102 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcceeecccccCCCCccceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCcccccc
Q 010456 61 VDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTG 140 (510)
Q Consensus 61 ~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG~E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~ 140 (510)
...+.+++.+-|+++. +|- .+| .+++.|+||||.|+++.++...+....... .++.+ ++..
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~~-~~~------~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~ 65 (405)
T PTZ00288 5 DEIFLEQLAEELKTDA--------SWS-SGP------IFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKT 65 (405)
T ss_pred hHHHHHHHHHHhccCc--------ccc-cCC------eEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--cccc
Confidence 3456667777776542 221 122 689999999999999999832211111111 13333 2233
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhc
Q 010456 141 TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKR 220 (510)
Q Consensus 141 ~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~ 220 (510)
+-.++.+++++-+....+.... + ..+....|....|+..-.. -|....|.-.+.+++. +- .+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~---~--~~~~~a~iAvAGPV~~~~~-~~~~~~~~~~~~lTNl---pw--~i------- 127 (405)
T PTZ00288 66 DIRELLEFFDEVLQKLKKNLSF---I--QRVAAGAISVPGPVTGGQL-AGPFNNLKGIARLTDY---PV--EL------- 127 (405)
T ss_pred cHHHHHHHHHHHHHHHHhcCcc---c--cCcCeEEEEEeCceeCCEe-eccccccccccccCCC---Cc--hh-------
Confidence 4567778877776665543210 0 1233345666678863111 1233777655555542 10 01
Q ss_pred CCCceEEEEEechHHHHhccccC--------------------------------CCCceEEEEeeCCcceeeEcccCcc
Q 010456 221 GLDMRVAALVNDTVGTLALGHYH--------------------------------DEDTVAAVIIGTGTNACYLERTDAI 268 (510)
Q Consensus 221 ~l~v~V~alvNDTVgTlla~ay~--------------------------------~~~~~iglIlGTGtNa~Y~e~~~~I 268 (510)
++.+-+.++||=.|.-.+.... .....+.+.+|||.++|++.+...+
T Consensus 128 -~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l~ 206 (405)
T PTZ00288 128 -FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGVS 206 (405)
T ss_pred -cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCeec
Confidence 4555569999988776654321 1234588999999999999864433
Q ss_pred ccccCCCCCCCcEEEeeccCCcCCCCCCCCccc--cc----cccCCC-----CCCccchhhhccccchHHHHHHHHHHhh
Q 010456 269 IKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYD--ID----LDAESP-----NPNDQGFEKMISGMYLGDIVRRVILRMS 337 (510)
Q Consensus 269 ~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D--~~----lD~~S~-----nPG~q~fEKmiSG~YLGEivR~vl~~l~ 337 (510)
.++ .++-+|+|...-+.-|.+.-+ .. +..... ....-.+|.++||+-|..+.|....
T Consensus 207 ~G~---------~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~~--- 274 (405)
T PTZ00288 207 DQY---------IVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYEKR--- 274 (405)
T ss_pred CCc---------ccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHHhc---
Confidence 333 344555554421111222111 11 000000 0001268999999999887775311
Q ss_pred hcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 338 EESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGIVG 417 (510)
Q Consensus 338 ~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaa 417 (510)
..+ ++ +-..+. .+.......+ .+ ..|..+.++.+++.+.++..
T Consensus 275 ~~~------~~----~~~~~~-------------a~ia~~A~~~------gD--------~~A~~al~~f~~~LG~~~~n 317 (405)
T PTZ00288 275 GNK------PS----APLKEA-------------AEVAKLAKYG------SD--------VAAVKAMKRHYKYLMRLAAE 317 (405)
T ss_pred cCC------Cc----cCcCCH-------------HHHHHHHHhC------CC--------HHHHHHHHHHHHHHHHHHHH
Confidence 000 00 000000 0111111111 22 56778999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHH------HHHHHH-------HhhhCCCCcccEEE-EE
Q 010456 418 ILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFRE------YLHEAL-------TDILGDDIAQHVIL-KV 483 (510)
Q Consensus 418 Il~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~------~l~~~l-------~~l~~~~~~~~v~l-~~ 483 (510)
+...+++ . . |.+.|+...+...|.. .++... .+++. .-.|.+ ..
T Consensus 318 lal~l~P-----------------~-~-VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~---~ipv~~qv~ 375 (405)
T PTZ00288 318 ISMQFLP-----------------L-T-VVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLS---RTTFLRQKK 375 (405)
T ss_pred HHHHHCC-----------------C-E-EEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHh---cCceEEEEe
Confidence 9988876 2 3 5555655444432221 222211 23332 124655 67
Q ss_pred cCCcchHHHHHHHHHhcc
Q 010456 484 TEDGSGIGAALLAASHSS 501 (510)
Q Consensus 484 s~DgSgiGAAl~Aa~~~~ 501 (510)
.++-+.+|||..|...+.
T Consensus 376 ~~~~gL~Gaa~~a~~~~~ 393 (405)
T PTZ00288 376 SVNLNLLGCLQFGSQLSH 393 (405)
T ss_pred CCCccHHHHHHHHHHhhc
Confidence 889999999988865544
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=98.87 E-value=6.1e-08 Score=99.94 Aligned_cols=289 Identities=17% Similarity=0.185 Sum_probs=152.0
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeee
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (510)
|++|+||||.|+++++-.+. ++... + .+.. +.++-+.+.|.+|+++..... .......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~~-~---~~~~-------~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQA-K---TYSG-------LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceeee-E---EEec-------CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999976442 22211 1 1110 113445556666665432110 011234888888
Q ss_pred cccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhcc--------cc----CCCCc
Q 010456 180 FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG--------HY----HDEDT 247 (510)
Q Consensus 180 FPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~--------ay----~~~~~ 247 (510)
.|++. +++ ..+ ++ ++. .++ +.|++.+ +++ .+.|.||..+..++. .+ +..+.
T Consensus 64 Gpv~~-----~~v-~~~---nl-~w~-~~~-~~l~~~~---g~~--~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITG-----DWV-AMT---NH-TWA-FSI-AELKQNL---GFS--HLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccC-----CEE-Eec---CC-CCe-eCH-HHHHHhc---CCC--eEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 99842 222 233 23 232 455 3666544 653 238999999999997 43 23455
Q ss_pred eEEEEeeCCcceee--EcccCccccccCCCCCCCc-EEEeeccCCcCCCCCCCCcccc----ccccCCCCCCccchhhhc
Q 010456 248 VAAVIIGTGTNACY--LERTDAIIKCQGLLTTSGG-MVVNMEWGNFWSSHLPRTSYDI----DLDAESPNPNDQGFEKMI 320 (510)
Q Consensus 248 ~iglIlGTGtNa~Y--~e~~~~I~k~~~~~~~~~~-miIN~EwG~f~~~~lp~T~~D~----~lD~~S~nPG~q~fEKmi 320 (510)
.+.+++||||..+. +.+.. .++ ...-.|+|...- -|.++-+. .+.... ++| .+|..+
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~-----------~g~l~~~agE~GH~~~--~~~~~~~~~~~~~l~~~~-~~g--~~E~~~ 190 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV-----------DGRWVVLPGEGGHVDF--APNSELEAIILEYLRAKI-GHV--SAERVL 190 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC-----------CCCEEECCCCcccccC--CCCCHHHHHHHHHHHHhc-CCc--eeeeee
Confidence 78999966666553 54210 011 123445554310 11111110 011122 344 799999
Q ss_pred cccchHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010456 321 SGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKIC 400 (510)
Q Consensus 321 SG~YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~ 400 (510)
||.-|..+.|...... ... .....+ ...++ .+.+-+..++ .-+ .+|
T Consensus 191 Sg~gl~~~~~~~~~~~-~~~-~~~~~~-----~~~~~--------------~~~I~~aa~~-----Gdd--------~~A 236 (316)
T TIGR00749 191 SGPGLVNIYEALVKAD-PER-QFNKLP-----QENLK--------------PKDISERALA-----GSC--------TDC 236 (316)
T ss_pred cHHHHHHHHHHHHhhc-Ccc-cccccc-----cccCC--------------HHHHHHHHHc-----CCC--------HHH
Confidence 9999999888753211 000 000000 00011 1112122221 011 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeec-H-----hHHHHHHHH--HHhhhC
Q 010456 401 DVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSY-T-----LFREYLHEA--LTDILG 472 (510)
Q Consensus 401 ~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~-p-----~f~~~l~~~--l~~l~~ 472 (510)
..+.++.+++.|.+++.+...+++.. .|-+-||+..+. + .|++.+++. +++++.
T Consensus 237 ~~~~~~~~~~lg~~i~nl~~~ldpeg------------------gv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 298 (316)
T TIGR00749 237 RRALSLFCVIYGRFAGNLALNLGTRG------------------GVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVH 298 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC------------------cEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHh
Confidence 88999999999999999999997621 233556664322 2 233333221 111111
Q ss_pred CCCcccEEEEEcCCcchHHHH
Q 010456 473 DDIAQHVILKVTEDGSGIGAA 493 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAA 493 (510)
.-.|.+...++-..+|||
T Consensus 299 ---~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 299 ---DIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred ---hCCEEEEcCCCccccCCC
Confidence 236888888999999985
No 23
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.7e-06 Score=83.35 Aligned_cols=310 Identities=22% Similarity=0.277 Sum_probs=161.9
Q ss_pred ceeEEEEEeCCceeEEEEEEEcCCcceeeeee----eeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCc-
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGGQRSSILSSD----VERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIR- 170 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~----~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~- 170 (510)
.|.|.+||=|+|.-|+.+|.-.++ +.-.. ...|-||. +-+|+.|++.+.+.......++..
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~ 67 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGP 67 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCc
Confidence 468999999999999999975442 21111 11233432 335555555555432211111111
Q ss_pred cccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccCCCCceE
Q 010456 171 RRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHDEDTVA 249 (510)
Q Consensus 171 ~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~~~~~~i 249 (510)
-..||..||- +.-.|-++.|.+.|+.+-.. .+=..|.||++++|+++ +....-=|
T Consensus 68 lr~lgL~lSg-----------------------~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~Gi 123 (336)
T KOG1794|consen 68 LRSLGLGLSG-----------------------TDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGI 123 (336)
T ss_pred cceeeeeccc-----------------------CCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcE
Confidence 2345555443 33334444444444332111 23348999999999988 44445557
Q ss_pred EEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccC-CcCCCCCCCCccccccccCCCCCCccchhhhccccchHHH
Q 010456 250 AVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWG-NFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDI 328 (510)
Q Consensus 250 glIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG-~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEi 328 (510)
-||-|||+||=.+.+-....+..+ -+.|+= .|| .|+- -+|-+---+|.+- -||-|. .-=+.
T Consensus 124 VLiaGTgs~crl~~~DGs~~~~gg----wg~~iG--d~GSaywi---a~~Avq~vfda~d------g~e~~~---~~i~~ 185 (336)
T KOG1794|consen 124 VLIAGTGSNCRLVNPDGSEKGAGG----WGHMIG--DGGSAYWI---ARQAVQMVFDAED------GFENMM---DKIKD 185 (336)
T ss_pred EEEecCCceeEEECCCCCccCCCC----CCCccC--CCcchhhh---hhhhhhheeehhc------Cccccc---chHHH
Confidence 899999999765554332222111 122321 133 3332 2332222223221 112221 11112
Q ss_pred HHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCC-CccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 010456 329 VRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDD-SPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRA 407 (510)
Q Consensus 329 vR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~-s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~Ra 407 (510)
+...+.++. .++++|.. +...-+|- -+-.......|.+.-. ..+ .+++.|.++|
T Consensus 186 v~~tif~~~-------~l~d~l~m--------l~~~Ys~f~k~riA~f~~kla~~ae--~Gd--------~~~~~ifr~A 240 (336)
T KOG1794|consen 186 VKQTIFKHF-------NLRDRLQM--------LEHLYSDFDKHRIALFTEKLAEHAE--IGD--------PLSAEIFRNA 240 (336)
T ss_pred HHHHHHHHc-------CCCCHHHH--------HHHHHhcchHHHHHHHHHHHHhhhh--ccC--------HHHHHHHHHH
Confidence 222233321 12222100 00000110 0011112222222111 122 6788899999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCc
Q 010456 408 ARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDG 487 (510)
Q Consensus 408 A~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~Dg 487 (510)
+...|-.+.|++..+.+.... ....-|.+-||+|..+....+-....+... ..-.++++..-++.
T Consensus 241 g~~Lg~~V~aVl~~l~~~~k~------------g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~s 305 (336)
T KOG1794|consen 241 GETLGRHVVAVLPQLPPTLKK------------GKTLPIVCVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKES 305 (336)
T ss_pred HHHHHHHHHHHHhhcCchhcc------------cCcceEEEEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeeccc
Confidence 999999999999999875432 134567899999998887777666665542 12246788878999
Q ss_pred chHHHHHHHHHhcc
Q 010456 488 SGIGAALLAASHSS 501 (510)
Q Consensus 488 SgiGAAl~Aa~~~~ 501 (510)
|.+|||++||....
T Consensus 306 sAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 306 SAVGAAILAASLDN 319 (336)
T ss_pred chHHHHHHhhhhcc
Confidence 99999999986543
No 24
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.57 E-value=9.4e-07 Score=88.90 Aligned_cols=271 Identities=22% Similarity=0.257 Sum_probs=145.7
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeee
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (510)
|+||.|||+.|+++++.+|+ +..+. ..-|.++.....++...-|.+-|.+.+..-+... .....+.+..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~---~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~- 69 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRG---KGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGA- 69 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEE---EES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEE-
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEE---EeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeE-
Confidence 68999999999999987663 44332 2334444433346666777777778777654321 0000111111
Q ss_pred cccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCCcce
Q 010456 180 FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNA 259 (510)
Q Consensus 180 FPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa 259 (510)
=|+...+... .+...+-+. -+.++||++..+.+..- +.-|-+|-|||+++
T Consensus 70 -----------------aG~~~~~~~~-----~~~~~~~~~-----~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 70 -----------------AGYGRAGDEQ-----EFQEEIVRS-----EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp -----------------EEEEETTTTT-----HHHHHHHHH-----EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred -----------------eeecCccccc-----chhhcceEE-----EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 1122222111 112222111 33789999988777643 46688999999999
Q ss_pred eeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHHhhhc
Q 010456 260 CYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEE 339 (510)
Q Consensus 260 ~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~l~~~ 339 (510)
..+.+ .+++.-.--||.+- +. .| ||.++| |+.|....++
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~~---------gD--------~G--------Sg~~ig---~~~L~~~~~~ 158 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHCL---------GD--------EG--------SGYWIG---RRALRAVLRE 158 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTTT---------TT--------TT--------SHHHHH---HHHHHHHHHH
T ss_pred EEEEc-------------CCcEEEeCCCCCCc---------CC--------CC--------cHHHHH---HHHHhHHHHH
Confidence 88752 34455445566651 11 11 344443 3334333322
Q ss_pred CCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 340 SDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVVTRRAARLAAAGIVGIL 419 (510)
Q Consensus 340 ~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl 419 (510)
-.-. .++....+ ......++.+. ..+....++ .+ .++..|++++++..+..+.+++
T Consensus 159 ~d~~--~~~~~~~~-~~~~~~~A~fa-------~~v~~~a~~------gd--------~~a~~Il~~a~~~la~~i~~~~ 214 (271)
T PF01869_consen 159 LDGR--AEPTPYAK-PASNARIAVFA-------PTVFEAAQQ------GD--------EVARDILAEAADELAELIKAVL 214 (271)
T ss_dssp HTTS--STTSHHHH-TT-HHHHHCTH-------HHHHHHHHT------TT--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCc--cccCcccC-CCChhheehhh-------HHHHHHHHc------CC--------chHHHHHHHHHHHHHHHHHHHH
Confidence 1100 01111000 01111111110 001111111 22 6777899999999999999998
Q ss_pred HHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHH
Q 010456 420 KKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLA 496 (510)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~A 496 (510)
++.+... .. |.+-||++++.+ |.+.+++.|++.+++. .-..+...+.-+.+|||++|
T Consensus 215 ~~~~~~~---------------~~--v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 215 KRLGPEK---------------EP--VVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HTCTCCC---------------CS--EEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSSHHHHHHHHHH
T ss_pred HhcCCCC---------------Ce--EEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCccHHHHHHHhC
Confidence 8876532 11 889999998755 5555767676655432 12345567888999999986
No 25
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.05 E-value=9.5e-06 Score=68.70 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=60.8
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceee
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFT 177 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfT 177 (510)
.+|+||+|||++++++++-.| .+... ..+|.. . +.+++++.+.+.+.++ . ...+|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g---~~~~~----~~~~~~--~-~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETG---KLADP----LEVIPR--T-NKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCC---CEecC----EEEEEe--c-CcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 489999999999999997544 23332 122221 1 3456677776666552 1 3457777
Q ss_pred eecccccccCCceEEE-ecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhc
Q 010456 178 FSFPVKQTSVSSGILI-KWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLAL 239 (510)
Q Consensus 178 FSFPv~q~si~~g~Li-~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla 239 (510)
+++|++ |.+. .| . .++.+.|++.+ ++|+ .+.||+.+|..+
T Consensus 59 ~pg~v~------g~~~~~~---------~-~~l~~~l~~~~---~~pv---~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMN------GTASRET---------E-EAFAELLKERF---NLPV---VLVDERLATVYA 99 (99)
T ss_pred CCcCCC------CCcCHHH---------H-HHHHHHHHHhh---CCcE---EEEeCCcccccC
Confidence 777774 3221 12 2 56666666654 7777 899999988643
No 26
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=97.94 E-value=0.00019 Score=74.25 Aligned_cols=290 Identities=22% Similarity=0.233 Sum_probs=145.8
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceeeee
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (510)
|+-|+||||.|+++++..+....+... +.|+ ......|.+.+.+.+.+.- ... .++....|..-
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~--~~~~------~~~~~s~~~~l~~~l~~~~-~~~-------~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDI--RRYP------SADFPSFEDALADYLAELD-AGG-------PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEE--EEEE------GCCCCHHHHHHHHHHHHTC-HHH-------TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCcccccc--EEEe------cCCcCCHHHHHHHHHHhcc-cCC-------CccceEEEEEe
Confidence 678999999999999986543112221 1122 2234445555555544421 110 12345777778
Q ss_pred cccccccCCceEEEecccceecCCCCCchHHHHHHHHHHh-cCCCceEEEEEechHHHHhccccC-------------CC
Q 010456 180 FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDK-RGLDMRVAALVNDTVGTLALGHYH-------------DE 245 (510)
Q Consensus 180 FPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r-~~l~v~V~alvNDTVgTlla~ay~-------------~~ 245 (510)
.|++. ++.++..|. |.++ .+.|.+ .+++ -+.|+||=.|.-.+.-.. ++
T Consensus 65 GPV~~---~~~~lTN~~--W~i~-----------~~~l~~~lg~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~ 126 (316)
T PF02685_consen 65 GPVRD---GKVRLTNLP--WTID-----------ADELAQRLGIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPDP 126 (316)
T ss_dssp S-EET---TCEE-SSSC--CEEE-----------HHHCHCCCT-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESST
T ss_pred cCccC---CEEEecCCC--cccc-----------HHHHHHHhCCc--eEEEEcccchheeccCCCCHHHeeeccCCCCCC
Confidence 88984 555665553 3333 133322 1443 448999988876544321 12
Q ss_pred CceE-EEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCcccccccc-CCCCCCccchhhhcccc
Q 010456 246 DTVA-AVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDA-ESPNPNDQGFEKMISGM 323 (510)
Q Consensus 246 ~~~i-glIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~-~S~nPG~q~fEKmiSG~ 323 (510)
...+ =+=.|||.+.|++.+. ..+..++-+|.|.-+ .-|+|+.+..+=. -...-|.=.+|..+||+
T Consensus 127 ~~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~ 193 (316)
T PF02685_consen 127 GGPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSGR 193 (316)
T ss_dssp TS-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSHH
T ss_pred CCcEEEEEcCCCcEEEEEEec-----------CCceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecchh
Confidence 2222 2236999999999763 234569999999863 3466655433310 00011444889999998
Q ss_pred chHHHHHHHHHHhhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 010456 324 YLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLIVKICDVV 403 (510)
Q Consensus 324 YLGEivR~vl~~l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v~~I~~~V 403 (510)
=|..|.+-.. ++. + .++. ..+.+.++ ...+++ .+ .+|...
T Consensus 194 GL~~ly~~l~----~~~---~-~~~~-----~~~~~~I~-------------~~A~~~------~d--------~~a~~a 233 (316)
T PF02685_consen 194 GLENLYRFLA----GER---G-AEPP-----LLSAAEIS-------------AAALEG------GD--------PLAREA 233 (316)
T ss_dssp HHHHHHHHHH----CCT---T---S---------HHHHH-------------HHHHCT----------------HHHHHH
T ss_pred hHHHHHHHHH----hcc---C-CCCC-----CCCHHHHH-------------HHHHcC------CC--------HHHHHH
Confidence 8876555421 111 0 0000 01111111 111111 22 455566
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHh------HHHHHHHH--HHhhhCCCC
Q 010456 404 TRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTL------FREYLHEA--LTDILGDDI 475 (510)
Q Consensus 404 ~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~------f~~~l~~~--l~~l~~~~~ 475 (510)
++.-.++.+.....+.-....- --|=+.||+..+.+. |++.+.+. +++++.
T Consensus 234 l~~f~~~lg~~agdlaL~~~a~------------------gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~--- 292 (316)
T PF02685_consen 234 LDLFARILGRVAGDLALTFLAR------------------GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLE--- 292 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T------------------CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHhCCC------------------eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHh---
Confidence 6666666666666555555431 235588888776654 44433321 122332
Q ss_pred cccEEEEEcCCcchHHHHHHHH
Q 010456 476 AQHVILKVTEDGSGIGAALLAA 497 (510)
Q Consensus 476 ~~~v~l~~s~DgSgiGAAl~Aa 497 (510)
.-.|.+...++-+.+|||..|.
T Consensus 293 ~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 293 DIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp T--EEEE--S-HHHHHHHHHHH
T ss_pred cCcEEEEeCCCHHHHHHHHHHh
Confidence 2468888899999999988764
No 27
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.018 Score=58.72 Aligned_cols=274 Identities=21% Similarity=0.224 Sum_probs=145.3
Q ss_pred eeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccccee
Q 010456 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (510)
-.||+||=|||..|..+-+..| +++-+- ..=|.++.+...++-+.-|.+.|.+.+++.+.. +..+++
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~~g---~vlg~g---~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~-------~~~i~~ 71 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADEDG---NVLGRG---KSGPANIQLVGKEEAVRNIKDAIREALDEAGLK-------PDEIAA 71 (301)
T ss_pred cEEEEEccCCcceEEEEEcCCC---cEEEEe---ccCCceecccchHHHHHHHHHHHHHHHHhcCCC-------HHHhCc
Confidence 3699999999999988877554 354432 345777777665788888999999988765422 222322
Q ss_pred eeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCce-EEEEEechHHHHhccccCCCCceEEEEeeC
Q 010456 177 TFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMR-VAALVNDTVGTLALGHYHDEDTVAAVIIGT 255 (510)
Q Consensus 177 TFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~-V~alvNDTVgTlla~ay~~~~~~iglIlGT 255 (510)
+++.- +..|.+.....+ .+ .+.+++- -+-++||....|.++...++-+ =+|+||
T Consensus 72 --~~agl-------------------a~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GT 126 (301)
T COG2971 72 --IVAGL-------------------ALAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDGI--IVIAGT 126 (301)
T ss_pred --eeeee-------------------eccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCCE--EEEecC
Confidence 22211 112333322222 22 3345543 5689999999999985443222 246666
Q ss_pred CcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccccchHHHHHHHHHH
Q 010456 256 GTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILR 335 (510)
Q Consensus 256 GtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~vl~~ 335 (510)
| .+|+-. ..++...-=-||++=. --.||.|||.-+=+-.++
T Consensus 127 G--Si~~~~------------~gg~~~r~GG~Gf~Ig-------------------------DegSga~ig~~~L~~~lr 167 (301)
T COG2971 127 G--SIGYGR------------KGGRRERVGGWGFPIG-------------------------DEGSGAWIGREALQEALR 167 (301)
T ss_pred C--eEEEEE------------eCCeeEEecCcCcccc-------------------------ccchHHHHHHHHHHHHHH
Confidence 6 555543 1233334344665511 124788888544333332
Q ss_pred hhhcCCCCCCCchhhccCCCCChhhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHH-----------HHHHHHHH
Q 010456 336 MSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEIPDVPLKVRKLI-----------VKICDVVT 404 (510)
Q Consensus 336 l~~~~~lF~~~p~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~v-----------~~I~~~V~ 404 (510)
..+ | ....-.|..+.|..+.. |.+.+....... .+..++...+ -.++..|.
T Consensus 168 a~D-G---------~~~~t~L~d~v~~~f~~----d~edlv~~~y~a----~~~~~~ia~lap~V~~~A~~GD~~A~~Il 229 (301)
T COG2971 168 AFD-G---------RREATPLTDAVMAEFNL----DPEDLVAFIYKA----GPGDKKIAALAPAVFEAARKGDPVAIRIL 229 (301)
T ss_pred Hhc-C---------CccCChHHHHHHHHhCC----CHHHHHHHHHhc----CCchHHHHHhhHHHHHHHHcCCHHHHHHH
Confidence 211 1 01111122233333221 222222222210 1111111111 03556677
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEc
Q 010456 405 RRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVT 484 (510)
Q Consensus 405 ~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s 484 (510)
+.||...++.+-++.... ....+.+-||+++.++.|...+++.+ ..+ .
T Consensus 230 ~~aa~~i~~~~~~l~~~~-------------------g~~~l~l~GG~~~~~~~~~~~~~~~l---~~~-----~----- 277 (301)
T COG2971 230 KEAAAYIATLLEALSIFN-------------------GSEKLSLLGGLAPSYPYYLSLFRRAL---LVP-----P----- 277 (301)
T ss_pred HHHHHHHHHHHHHHhccc-------------------CCceEEEeccccccchhhHHHHHHHh---cCC-----c-----
Confidence 777766555554443221 12457799999999999999998864 221 1
Q ss_pred CCcchHHHHHHHH
Q 010456 485 EDGSGIGAALLAA 497 (510)
Q Consensus 485 ~DgSgiGAAl~Aa 497 (510)
.+--..||.+.|.
T Consensus 278 ~~D~~~GA~~~A~ 290 (301)
T COG2971 278 IGDALSGAVLLAL 290 (301)
T ss_pred cccHHHHHHHHHH
Confidence 3445677777763
No 28
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.37 E-value=0.073 Score=56.02 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhh
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDIL 471 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~ 471 (510)
..|..+.+..++..|-+|++++..++.+ +-.|.+.|++-+ .+.+++.+.+.++.+.
T Consensus 266 ~~A~~a~d~~~~~la~~Ia~l~~~l~g~-----------------pD~IV~gGGI~e-~~~l~~~I~~~l~~~a 321 (351)
T TIGR02707 266 EKAKLILDAMAYQIAKEIGKMAVVLKGK-----------------VDAIVLTGGLAY-SKYFVSEIIKRVSFIA 321 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCEEEEcchhhc-CHHHHHHHHHHHHhhC
Confidence 4567788888888899999998888431 135778999876 4778899999998874
No 29
>PRK03011 butyrate kinase; Provisional
Probab=96.71 E-value=0.93 Score=47.90 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcc
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQ 477 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~ 477 (510)
..|..+.++.++.+|-+|+++...++.+ .-.|.+.||+-+ .+.+++.+.+.++.+.
T Consensus 268 ~~A~~ald~~~~~lak~I~~l~~~L~gd-----------------pD~IVlgGGI~~-~~~l~~~I~~~l~~~~------ 323 (358)
T PRK03011 268 EKAKLVYEAMAYQIAKEIGAMAAVLKGK-----------------VDAIVLTGGLAY-SKRLVERIKERVSFIA------ 323 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCEEEEeCcccc-CHHHHHHHHHHHHhhC------
Confidence 5577788889999999999998888421 135778999887 8999999999998762
Q ss_pred cEEEEEcCCcchHHH
Q 010456 478 HVILKVTEDGSGIGA 492 (510)
Q Consensus 478 ~v~l~~s~DgSgiGA 492 (510)
.+.+.+++++.--+|
T Consensus 324 pv~i~p~~~e~~A~a 338 (358)
T PRK03011 324 PVIVYPGEDEMEALA 338 (358)
T ss_pred CeEEEeCCCHHHHHH
Confidence 578888877644433
No 30
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=96.22 E-value=1.2 Score=45.72 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=103.1
Q ss_pred eeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccccee
Q 010456 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (510)
...|+=|+||||-|+++|.....+ ..+. +.+...+ |.-+-+.|.+|+.++.. ..+..--|
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~~--~~~~--------~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~ 65 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPAE--PLQA--------ETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACF 65 (320)
T ss_pred CceEEEecCCcceEEEEeccCCCC--cccc--------ceecccC----cCCHHHHHHHHHHHhhc------cCccceEE
Confidence 346777999999999999885421 1110 1122211 33355556666665521 12344566
Q ss_pred eeecccccccCCceEEEeccc-ceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhccccCC-----------
Q 010456 177 TFSFPVKQTSVSSGILIKWTK-GFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHD----------- 244 (510)
Q Consensus 177 TFSFPv~q~si~~g~Li~wtK-gF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~----------- 244 (510)
.---|+.- . -+++|. .|.++ .+.| |+.+..+=+.|+||-+|.-++-....
T Consensus 66 AiAgPv~g-----d-~v~lTN~~W~~s-----------~~~~-r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~ 127 (320)
T COG0837 66 AIAGPIDG-----D-EVRLTNHDWVFS-----------IARM-RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGK 127 (320)
T ss_pred EEecCccC-----C-EEeeecCccccc-----------HHHH-HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCC
Confidence 66777762 2 333331 11121 1222 33444444589999999887765531
Q ss_pred --CCceEEEEe--eCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCcccccccc-CCCCCCccchhhh
Q 010456 245 --EDTVAAVII--GTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDA-ESPNPNDQGFEKM 319 (510)
Q Consensus 245 --~~~~iglIl--GTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~-~S~nPG~q~fEKm 319 (510)
++.-+ .|+ |||-..|++.+.. .+-+.+-+|=|.- +.-|+|+-|..|=. -..+-|.-.-|..
T Consensus 128 ~~~~a~~-avlGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~ 193 (320)
T COG0837 128 PEPNAPR-AVLGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHV--DFAPRSEREFQILEYLRARFGRVSAERV 193 (320)
T ss_pred CCCCCce-EEEcCCCCcceEEEEecC-----------CeeEeccCCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhh
Confidence 22223 344 5666777776532 2356777887765 34578877766532 1223455667999
Q ss_pred ccccchHHHHHHH
Q 010456 320 ISGMYLGDIVRRV 332 (510)
Q Consensus 320 iSG~YLGEivR~v 332 (510)
+||+=|=-|-|-+
T Consensus 194 LSG~GL~~iY~al 206 (320)
T COG0837 194 LSGPGLVNLYRAL 206 (320)
T ss_pred cccccHHHHHHHH
Confidence 9999886655543
No 31
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.50 E-value=0.053 Score=53.51 Aligned_cols=60 Identities=20% Similarity=0.448 Sum_probs=42.4
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCC---ccccccChhHHHHHHHHHHHHHHhhc
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIP---PELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip---~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
.||+||+|.||+|+++++..| +++...+..++.. +....-+.+++++.+.+++++.++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~g---~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDG---KIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTS---CEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEcccceEEEEEeCCC---CEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 489999999999999998544 3444443333322 12223468999999999999999875
No 32
>PRK13318 pantothenate kinase; Reviewed
Probab=95.34 E-value=0.019 Score=57.62 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=43.3
Q ss_pred CceEEEEeeCCcceeeEcccCccc-cc--cCCCCCCCcEEEeeccCCcCCCCCCCCccccccccCCCCCCccchhhhccc
Q 010456 246 DTVAAVIIGTGTNACYLERTDAII-KC--QGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 322 (510)
Q Consensus 246 ~~~iglIlGTGtNa~Y~e~~~~I~-k~--~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG 322 (510)
...+-+-+||++...++.+....- .+ +|..-....+.=+| ..||..+.+. ....+|...-|-|-||
T Consensus 124 ~~~ivid~GTA~t~d~v~~~g~~~GG~I~PG~~l~~~aL~~~t-------a~Lp~~~~~~----~~~~~g~~T~~ai~~G 192 (258)
T PRK13318 124 GPLIVVDFGTATTFDVVSAKGEYLGGVIAPGINISADALFQRA-------AKLPRVEITK----PDSVIGKNTVEAMQSG 192 (258)
T ss_pred CCEEEEEcCCceEEEEEcCCCcEEEEEECccHHHHHHHHHhhh-------hcCCCCcCCC----CCccCCCCHHHHHHHH
Confidence 357888999999998885432211 10 00000000011111 2466544332 2345799999999999
Q ss_pred cchHHH--HHHHHHHhhh
Q 010456 323 MYLGDI--VRRVILRMSE 338 (510)
Q Consensus 323 ~YLGEi--vR~vl~~l~~ 338 (510)
.|.|-+ +..++.++.+
T Consensus 193 ~~~~~~~~i~~~~~~~~~ 210 (258)
T PRK13318 193 IYYGYVGLVEGIVKRIKE 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887653 3334444433
No 33
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=93.72 E-value=13 Score=41.01 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=53.2
Q ss_pred eEEEEEeCCceeEEEEEEEc-CCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccccee
Q 010456 98 IYYALDLGGTNFRVLRVQLG-GQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~-g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (510)
.+++||+|--.-|+++++.. |..-......+..+.++.+.-.-++++.+.-++..|.+.+++.+.+. ..-.|+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~------~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP------ADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh------hHeeEE
Confidence 58999999999999999985 53211111112224455555555789999999999999999876431 334555
Q ss_pred eeecccc
Q 010456 177 TFSFPVK 183 (510)
Q Consensus 177 TFSFPv~ 183 (510)
.|+|-|.
T Consensus 78 GvDaTcS 84 (544)
T COG1069 78 GVDATCS 84 (544)
T ss_pred EEcceee
Confidence 5555443
No 34
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=93.27 E-value=0.25 Score=54.32 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=41.8
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeec--CC-ccccccChhHHHHHHHHHHHHHHhhc
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IP-PELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~--Ip-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
+|+||+|+|+.|+++++..| +++...+.+++ .| +.....+.+++++.+.+++++.++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENG---KIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred EEEEeccccceEEEEEcCCC---CEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999998655 34444443333 22 11223357889999999999998754
No 35
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.82 E-value=0.3 Score=54.28 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=42.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC--Cc-cccccChhHHHHHHHHHHHHHHhhcC
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--PP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I--p~-~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
+|+||+|+|+.|+++++..|+ ++...+.+++. |. ....-+.+++++-+.+++++.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999987653 44433333332 22 23334678899999999999987643
No 36
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=92.65 E-value=0.35 Score=52.48 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=49.6
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC---CccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccccee
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI---PPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I---p~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (510)
|+||+|.|++|++++++.|+ ++.+.+..++. ++.....+.+++++.+++++.+++++.... +.+...+|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~----~~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEM----GQDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCC----cccEEEEEE
Confidence 58999999999999998663 45444333331 122223457889999999999999875421 123455666
Q ss_pred e--eeccc
Q 010456 177 T--FSFPV 182 (510)
Q Consensus 177 T--FSFPv 182 (510)
+ -+-++
T Consensus 74 s~~~~g~v 81 (481)
T TIGR01312 74 SGQMHGLV 81 (481)
T ss_pred ecCCceeE
Confidence 5 44555
No 37
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.55 E-value=0.35 Score=53.36 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=43.0
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCC-----ccccccChhHHHHHHHHHHHHHHhhc
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIP-----PELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip-----~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
.+|+||+|.|+.|+++++..|+ ++...+.+++.+ +....-+.+++++-+.++|.+.+++.
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~ 68 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKA 68 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999987663 444333334322 12223367899999999999998764
No 38
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.36 E-value=0.35 Score=53.06 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=42.0
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC--Ccc-ccccChhHHHHHHHHHHHHHHhhcC
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--PPE-LMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I--p~~-~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
.+|+||+|+|+.|+++++..| +++...+.+++. |.. ...-+.+++++.+.+++.+.+.+.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g---~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDG---NIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred eEEEEecCCCceEEEEECCCC---CEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999998665 344433332321 211 1122578899999999999987654
No 39
>PRK00047 glpK glycerol kinase; Provisional
Probab=91.91 E-value=0.4 Score=52.64 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=42.5
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeec--CCcc-ccccChhHHHHHHHHHHHHHHhhcC
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IPPE-LMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~--Ip~~-~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
.+|+||+|+|+.|+++++..|+ ++...+.+++ .|.. ...-+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999987663 3433333343 2221 1123678899999999999987643
No 40
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=91.90 E-value=0.43 Score=52.91 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=44.6
Q ss_pred eEEEEEeCCceeEEEEEE-EcCCcceeeeeeeeeec-------CC-------ccccccChhHHHHHHHHHHHHHHhhcC
Q 010456 98 IYYALDLGGTNFRVLRVQ-LGGQRSSILSSDVERQP-------IP-------PELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~-l~g~~~~i~~~~~~~~~-------Ip-------~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
.+|+||+|.|+.|+++++ ..|+ ++...+.+++ .| +....-+.+++++-+.+++++.+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999 7664 3433344454 23 233444688999999999999887643
No 41
>PRK15027 xylulokinase; Provisional
Probab=91.66 E-value=0.51 Score=51.61 Aligned_cols=60 Identities=20% Similarity=0.460 Sum_probs=44.0
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC--C-ccccccChhHHHHHHHHHHHHHHhhc
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--P-PELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
.||+||+|.|+.|+++++..| +++...+..+++ | +....-+.+++++.+.+++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G---~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQG---EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCC---CEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 489999999999999998655 455555444543 2 22333467889999999999998754
No 42
>PRK10331 L-fuculokinase; Provisional
Probab=91.41 E-value=0.61 Score=50.81 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=41.6
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeec--C--C-ccccccChhHHHHHHHHHHHHHHhh
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--I--P-PELMTGTSEDLFDFIASALQQFVEK 159 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~--I--p-~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (510)
.+|+||+|.|+.|+++++..|+ ++...+..++ + | +....-+.+++++-+.+++++.+++
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~ 66 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE 66 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999987663 4444333332 1 1 1122336788999999999998865
No 43
>PRK00976 hypothetical protein; Provisional
Probab=91.22 E-value=1.9 Score=44.89 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcc
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQ 477 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~ 477 (510)
..|..+.++.++.+|.+|++++..+++ -.|.+.||+-+. +.+ .+.+.+++.+.+
T Consensus 238 ~~A~~aid~~~~~LA~~IAnLi~llDP-------------------e~IVLGGGVS~~-~e~--~L~~~I~e~l~~---- 291 (326)
T PRK00976 238 EKAKLAIDTLALFVAMEIASLLLLNPE-------------------DNVVLAGSVGEM-DEP--DVSERIKELLDK---- 291 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------CEEEEcCccccC-chh--HHHHHHHHHhcc----
Confidence 357788899999999999999988864 368899998754 322 355555554432
Q ss_pred cEEEEEcCCcchHHHHHHHHH
Q 010456 478 HVILKVTEDGSGIGAALLAAS 498 (510)
Q Consensus 478 ~v~l~~s~DgSgiGAAl~Aa~ 498 (510)
. .-.+.+|.+.+|||++|.-
T Consensus 292 ~-~a~LG~dAGaiGAA~iA~~ 311 (326)
T PRK00976 292 K-VLVLGKESAAIGLALIARD 311 (326)
T ss_pred c-ccccCCchHHHHHHHHHHH
Confidence 1 3556789999999998854
No 44
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=90.64 E-value=0.72 Score=50.84 Aligned_cols=62 Identities=18% Similarity=0.375 Sum_probs=44.8
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCc---cccccChhHHHHHHHHHHHHHHhhcC
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPP---ELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~---~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
.||+||+|.|+.|+.+++..+ ..++......+.... ....-+.++++..+.++|.+.+++..
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999974 234444333333221 12334689999999999999998753
No 45
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=90.24 E-value=0.85 Score=50.17 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=42.4
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC--C-ccccccChhHHHHHHHHHHHHHHhhc
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--P-PELMTGTSEDLFDFIASALQQFVEKE 160 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (510)
.+|+||+|.|+.|+++++..| .++...+..+++ | +....-+.+++++-+.++|.+.+++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G---~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 65 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKG---NVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL 65 (504)
T ss_pred EEEEEecCCCceEEEEECCCC---CEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999998765 344443333431 1 22223357889999999999988764
No 46
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=90.22 E-value=0.77 Score=49.96 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecC----C-ccccccChhHHHHHHHHHHHHHHhh
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI----P-PELMTGTSEDLFDFIASALQQFVEK 159 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~I----p-~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (510)
.+|+||+|.|+.|+++++..| +++.+.+.+++. | +....-+.+++++-+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g---~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQG---KIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCC---CEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 378999999999999998765 344443333321 1 2223346788999999999999854
No 47
>PRK13321 pantothenate kinase; Reviewed
Probab=89.24 E-value=0.88 Score=45.60 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=29.9
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHH
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQ 154 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~ 154 (510)
+|+||+|||++++++++ ++ ++... +.+|..... +.+++++.+.+.+.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~~----~~~~T~~~~-~~~~~~~~l~~l~~ 48 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLRS----FRLPTDKSR-TSDELGILLLSLFR 48 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEEE----EEEecCCCC-CHHHHHHHHHHHHH
Confidence 68999999999999997 33 23332 445544322 34666666655443
No 48
>PLN02295 glycerol kinase
Probab=88.76 E-value=1.2 Score=49.18 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=43.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeec--CCc-cccccChhHHHHHHHHHHHHHHhhcC
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IPP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~--Ip~-~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
+|+||+|.|+.|+++++..|+ ++...+.+++ .|+ ....-+.+++++-+.++|++.+++..
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999987663 4433333333 222 23334688999999999999987654
No 49
>PRK04123 ribulokinase; Provisional
Probab=88.45 E-value=1.4 Score=48.95 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=41.5
Q ss_pred eEEEEEeCCceeEEEEEEE-cCCcceeeeeeeeeecC--------Cc-cccccChhHHHHHHHHHHHHHHhhcC
Q 010456 98 IYYALDLGGTNFRVLRVQL-GGQRSSILSSDVERQPI--------PP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l-~g~~~~i~~~~~~~~~I--------p~-~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
.+|+||+|.|+.|+++++. +|+ ++...+..++. |+ ....-+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999985 663 33333333431 21 12233477889999999999886543
No 50
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=88.04 E-value=2.8 Score=39.47 Aligned_cols=46 Identities=33% Similarity=0.450 Sum_probs=36.6
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHh
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASH 499 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~ 499 (510)
.|-+.||.. +++.+.+.+.+.+. ..|.....++++.+|||++|+++
T Consensus 152 ~i~~~GG~~-~n~~~~q~~Advl~--------~~V~~~~~~e~~a~GaA~~A~~a 197 (198)
T PF02782_consen 152 RIRVSGGGA-KNPLWMQILADVLG--------RPVVRPEVEEASALGAALLAAVA 197 (198)
T ss_dssp EEEEESGGG-GSHHHHHHHHHHHT--------SEEEEESSSTHHHHHHHHHHHHH
T ss_pred eeEeccccc-cChHHHHHHHHHhC--------CceEeCCCCchHHHHHHHHHHhh
Confidence 455778876 99999998887653 36766667999999999999876
No 51
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=81.36 E-value=13 Score=38.45 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=59.4
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccceee
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFT 177 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfT 177 (510)
.+++||+|.+++|++.++-.+++..+.. ....+.|.+......-.=.+-+++.|.+.+++.+. +.. -..
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~--~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~-------~~k--~v~ 72 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEH--YAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI-------NTK--KAA 72 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEE--EEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC-------Ccc--eEE
Confidence 6899999999999998876554333333 23467776654322111134567777777766431 112 346
Q ss_pred eecccccccCCceEEEecccceecCC-CCCchHHHHHHHHHHh
Q 010456 178 FSFPVKQTSVSSGILIKWTKGFAIES-MVGQEVTESLQRALDK 219 (510)
Q Consensus 178 FSFPv~q~si~~g~Li~wtKgF~~~~-~~G~dv~~lL~~al~r 219 (510)
+++|-.+. + +|-+.++. +-.+++.+.+.-..++
T Consensus 73 ~alp~~~~------~---~r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 73 TAVPGSAV------I---TKVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred EEecCCee------E---EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 66666531 1 13356665 5667777777655544
No 52
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=80.63 E-value=2.4 Score=45.91 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=37.6
Q ss_pred EEEEeCCceeEEEEEEEcCCcceee-eeeeeeecCC--cc-ccccChhHHHHHHHHHHHHHHh
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSIL-SSDVERQPIP--PE-LMTGTSEDLFDFIASALQQFVE 158 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~-~~~~~~~~Ip--~~-~~~~~~~~lFd~IA~~i~~fl~ 158 (510)
||||+|.|+.|+++++.++.+..+. ...++..+.. .+ ...-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 5899999999999999975423343 2222211111 11 1122466899999999998865
No 53
>PRK13410 molecular chaperone DnaK; Provisional
Probab=80.28 E-value=5.6 Score=45.61 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|.-+..|...++--++ +..+-.. ..-..+|-+.||. ..|..++.+++. ++
T Consensus 297 R~~FE~l~~~l~~r~~~~i~~~L----~~ag~~~-------------~dId~VvLVGGss--RiP~V~~~l~~~----fg 353 (668)
T PRK13410 297 RKQFESLCGDLLDRLLRPVKRAL----KDAGLSP-------------EDIDEVVLVGGST--RMPMVQQLVRTL----IP 353 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh-------------hhCcEEEEECCcc--ccHHHHHHHHHH----cC
Confidence 44556777778877666554443 2222110 0112456677775 678777777665 44
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
...... + -.+..-.+|||+.||..+.
T Consensus 354 ~~~~~~--~-npdeaVA~GAAi~aa~ls~ 379 (668)
T PRK13410 354 REPNQN--V-NPDEVVAVGAAIQAGILAG 379 (668)
T ss_pred CCcccC--C-CCchHHHHhHHHHHHhhcc
Confidence 322111 1 2345678899999987653
No 54
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=80.10 E-value=11 Score=41.81 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=62.5
Q ss_pred ceeEEEEEeCCceeEEEEEEE-cCCcceeeeeee-eeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 010456 96 KGIYYALDLGGTNFRVLRVQL-GGQRSSILSSDV-ERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRE 173 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l-~g~~~~i~~~~~-~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~ 173 (510)
...+++||+|-|.-|.++++- .+..-...+... ..++.+ ....-++++++.-+.+||+.-.++-... ..-.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~-~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~~~ 77 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKE-GWVEQDPKEIWQAVCRCIEKACEKLGVL------NIKV 77 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCC-CeEEeCHHHHHHHHHHHHHHHHHhhccc------cccc
Confidence 457999999999999999973 332111111111 012222 2344578999999999999987654321 2344
Q ss_pred ceeeeecccccccCCceEEEecccceecCC
Q 010456 174 LGFTFSFPVKQTSVSSGILIKWTKGFAIES 203 (510)
Q Consensus 174 lGfTFSFPv~q~si~~g~Li~wtKgF~~~~ 203 (510)
.|.|-|-=+.| ....+-|.|+..-+.
T Consensus 78 ~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 78 VGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred cccEEEEEEec----CCceEEeecCCCCcc
Confidence 56777777777 557778888876654
No 55
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=77.38 E-value=7.5 Score=42.39 Aligned_cols=107 Identities=21% Similarity=0.327 Sum_probs=71.8
Q ss_pred ceeEEEEEeCCceeEEEEEEEcCCcceeeeeee-eeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGGQRSSILSSDV-ERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRREL 174 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~-~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~l 174 (510)
...++|||-|-|+-|..+++-.|+--.+.+.+. +.||-|. ....++.+++.-...++.+.+.+.+. .+.+.--|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~G-WVEhDp~eIw~~~~~~l~~a~~~~~i----~~~~iaaI 78 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPG-WVEHDPLEIWASVRSVLKEALAKAGI----KPGEIAAI 78 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCC-ccccCHHHHHHHHHHHHHHHHHHcCC----CccceEEE
Confidence 357899999999999988876654222222222 2255555 34557999999999999998877642 24557789
Q ss_pred eeeeecccccccCCceEEEeccc--ceecCC------CCCchHHHHHHHH
Q 010456 175 GFTFSFPVKQTSVSSGILIKWTK--GFAIES------MVGQEVTESLQRA 216 (510)
Q Consensus 175 GfTFSFPv~q~si~~g~Li~wtK--gF~~~~------~~G~dv~~lL~~a 216 (510)
|+| +| +.+.+-|.| |=-+.+ --..++++.|.+.
T Consensus 79 GIT-----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 79 GIT-----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred Eee-----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 998 44 889999997 322222 2455666666654
No 56
>CHL00094 dnaK heat shock protein 70
Probab=76.00 E-value=8.3 Score=43.73 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=30.9
Q ss_pred EEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 444 TVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 444 ~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.++-+.||. ..|..++.+++.+ +.... ..+ ..++.-..|||+.||..+.
T Consensus 331 ~ViLvGGss--riP~v~~~l~~~f----g~~~~--~~~-~pdeava~GAA~~aa~ls~ 379 (621)
T CHL00094 331 EVVLVGGST--RIPAIQELVKKLL----GKKPN--QSV-NPDEVVAIGAAVQAGVLAG 379 (621)
T ss_pred EEEEECCcc--CChHHHHHHHHHh----CCCcC--cCC-CchhHHHhhhHHHHHHhcC
Confidence 456666664 7888888887765 32211 111 2244678899999998664
No 57
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=74.54 E-value=10 Score=43.45 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|+-+..|.-.++--.| +..+-.. ..-..++-+.||. ..|..++.+++.+ +
T Consensus 336 R~efe~l~~~l~~~~~~~i~~~L----~~a~~~~-------------~~i~~ViLvGGss--riP~v~~~l~~~f----~ 392 (663)
T PTZ00400 336 RAKLEELTHDLLKKTIEPCEKCI----KDAGVKK-------------DELNDVILVGGMT--RMPKVSETVKKIF----G 392 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCH-------------HHCcEEEEECCcc--CChHHHHHHHHHh----C
Confidence 44455777777777655554433 2222110 0112456667765 6777777777664 4
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.+.... + -.+..-..|||+.|+..+.
T Consensus 393 ~~~~~~--~-npdeaVA~GAAi~aa~l~~ 418 (663)
T PTZ00400 393 KEPSKG--V-NPDEAVAMGAAIQAGVLKG 418 (663)
T ss_pred CCcccC--C-CCccceeeccHHHHHhhcC
Confidence 321111 1 2345557899999987653
No 58
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=74.43 E-value=15 Score=42.19 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|+-+.+|.-..+--++ +..+-... .-.-+|-+.||. ..|..++.+.+.+ +
T Consensus 322 R~efe~l~~~l~~r~~~~v~~~L----~~a~~~~~-------------dId~VvLVGGss--riP~V~~~l~~~f----g 378 (657)
T PTZ00186 322 RSKFEGITQRLIERSIAPCKQCM----KDAGVELK-------------EINDVVLVGGMT--RMPKVVEEVKKFF----Q 378 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCChh-------------hCCEEEEECCcc--cChHHHHHHHHHh----C
Confidence 44555778788887766655443 22221100 112456677776 7888887777754 3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
... +.-.-.+..-.+|||+.|+..+.
T Consensus 379 ~~~---~~~~nPdeaVA~GAAi~a~~l~~ 404 (657)
T PTZ00186 379 KDP---FRGVNPDEAVALGAATLGGVLRG 404 (657)
T ss_pred CCc---cccCCCchHHHHhHHHHHHHhcc
Confidence 211 11122345667899999987654
No 59
>PLN02669 xylulokinase
Probab=74.24 E-value=9.4 Score=42.76 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHh
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASH 499 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~ 499 (510)
|-+.||- .+++.+.+.+-+.+. ..|......+++.+|||++|+..
T Consensus 449 i~~~GGg-s~s~~w~Qi~ADVlg--------~pV~~~~~~ea~alGAA~~A~~~ 493 (556)
T PLN02669 449 IIATGGA-SANQSILKLIASIFG--------CDVYTVQRPDSASLGAALRAAHG 493 (556)
T ss_pred EEEEcCh-hcCHHHHHHHHHHcC--------CCeEecCCCCchHHHHHHHHHHH
Confidence 3344443 388888888777543 24555556788999999999873
No 60
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=72.74 E-value=7.9 Score=43.94 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=30.1
Q ss_pred EEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 444 TVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 444 ~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.++-+.||. ..|..++.+++.+ +..... .+ -.+..-..|||+.||..+.
T Consensus 329 ~ViLvGGss--riP~v~~~l~~~f----g~~~~~--~~-npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 329 EVILVGGST--RMPAVQELVKEFF----GKEPNK--GV-NPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred EEEEECCcC--CChHHHHHHHHHh----CCCCCc--Cc-CChHHHHHhHHHHHHHhcC
Confidence 455666665 6788887777764 432111 11 2345667899999987653
No 61
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=72.58 E-value=8.9 Score=43.50 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhh
Q 010456 392 VRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDIL 471 (510)
Q Consensus 392 d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~ 471 (510)
.+..+.++|.-+..|...++-..| +..+-.. ..-..++-+.||. ..|..++.+.+.+
T Consensus 296 tr~efe~l~~~l~~~~~~~i~~~L----~~a~~~~-------------~~i~~ViLvGGss--riP~v~~~l~~~f---- 352 (616)
T PRK05183 296 TREQFNALIAPLVKRTLLACRRAL----RDAGVEA-------------DEVKEVVMVGGST--RVPLVREAVGEFF---- 352 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCc-------------ccCCEEEEECCcc--cChHHHHHHHHHh----
Confidence 345555777777777665544333 2222110 0112455666665 6777777776654
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 472 GDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 472 ~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
+...... + -.+..-..|||+.|+..+.
T Consensus 353 g~~~~~~--~-npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 353 GRTPLTS--I-DPDKVVAIGAAIQADILAG 379 (616)
T ss_pred ccCcCcC--C-CchHHHHHHHHHHHHHhcc
Confidence 3221111 1 2345667899999987654
No 62
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=70.80 E-value=38 Score=34.13 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCccceeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 010456 91 PTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIR 170 (510)
Q Consensus 91 PtG~E~G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~ 170 (510)
|.-+..+.+++||+|-|++|+...+..+. .+..- ......++.|.-.+ ++-....|..+++.-.... +.
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~~---~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~----g~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAGA---LEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKL----GR 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEEE---eccccccCCCEEee-HHHHHHHHHHHHHHHHHHh----CC
Confidence 33445778999999999999887655332 22221 11122233332111 5556667777765321000 00
Q ss_pred cccceeeeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEechHHHHhc
Q 010456 171 RRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLAL 239 (510)
Q Consensus 171 ~l~lGfTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla 239 (510)
..+ ...-+.|..++. .+ ...+.+++++.|+++ ..++++..|...+
T Consensus 87 ~i~-~v~~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~~--~~ii~e~~A~a~~ 131 (267)
T PRK15080 87 ELT-HAATAIPPGTSE--------------------GD-PRAIINVVESAGLEV--THVLDEPTAAAAV 131 (267)
T ss_pred CcC-eEEEEeCCCCCc--------------------hh-HHHHHHHHHHcCCce--EEEechHHHHHHH
Confidence 111 112256655421 01 123557888778765 4789999987765
No 63
>PRK13324 pantothenate kinase; Reviewed
Probab=69.10 E-value=23 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=29.6
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHH
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASAL 153 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i 153 (510)
.|+||+|=||.+.++.+ ++ +... .++++..-...+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSVDSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCccccchHHHHHHHHHHH
Confidence 58999999999999987 21 2333 256665222335666666655433
No 64
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=68.76 E-value=29 Score=39.73 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=29.8
Q ss_pred EEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 444 TVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 444 ~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.++-+.||. ..|..++.+++.+.. ...... + -.+..-..|||+.||..+.
T Consensus 335 ~ViLvGGss--riP~v~~~i~~~f~~---~~~~~~--~-npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 335 EVVLVGGST--RIPKVQSLIKDFFNG---KEPCKS--I-NPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred EEEEECCCC--CChhHHHHHHHHhCC---CCCCCC--C-CcchHHhhhhhhhHHHhcC
Confidence 455666665 778777777765421 111111 1 2345667899999988664
No 65
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=67.28 E-value=1.7e+02 Score=30.71 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHhcCCCceEEEEEechHHHHhcc
Q 010456 206 GQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (510)
Q Consensus 206 G~dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ 240 (510)
-++.++-+.++++..|+++ ..|+++..|...+.
T Consensus 156 ~~~~v~~~~~~~~~aGl~~--~~i~~~~~A~a~a~ 188 (371)
T TIGR01174 156 SSTILRNLVKCVERCGLEV--DNIVLSGLASAIAV 188 (371)
T ss_pred EHHHHHHHHHHHHHcCCCe--eeEEEhhhhhhhhh
Confidence 3567777777887777654 57788888887754
No 66
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=67.26 E-value=14 Score=36.69 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=29.8
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhh
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEK 159 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (510)
+++||+|.|+.|+++++ .+ .++...+ . ++ +..++-.++.+.+.+++
T Consensus 2 ~lGIDiGtts~K~vl~d-~g---~il~~~~---~-~~-------~~~~~~~~~~l~~~~~~ 47 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DG---KVIGYKW---L-DT-------TPVIEETARAILEALKE 47 (248)
T ss_pred EEEEEcChhheEEEEEc-CC---EEEEEEE---e-cC-------CCCHHHHHHHHHHHHHH
Confidence 68999999999999996 44 3444322 1 21 22455566777776654
No 67
>PLN03184 chloroplast Hsp70; Provisional
Probab=62.98 E-value=21 Score=40.94 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|.-+..|...++-.+| +..+-.. ..-..++-+.||. ..|..++.+++.+ +
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L----~~a~~~~-------------~dId~ViLvGGss--riP~V~~~i~~~f----g 390 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENAL----RDAKLSF-------------KDIDEVILVGGST--RIPAVQELVKKLT----G 390 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh-------------hHccEEEEECCcc--ccHHHHHHHHHHh----C
Confidence 34455777777777665444433 2222110 0113456677776 6788777777754 4
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
... ...+ -.+..-..|||+.||..+.
T Consensus 391 ~~~--~~~~-npdeaVA~GAAi~aa~ls~ 416 (673)
T PLN03184 391 KDP--NVTV-NPDEVVALGAAVQAGVLAG 416 (673)
T ss_pred CCc--cccc-CcchHHHHHHHHHHHHhcc
Confidence 321 1122 2355667899999987654
No 68
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=62.07 E-value=1.3e+02 Score=30.88 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCCcce
Q 010456 210 TESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNA 259 (510)
Q Consensus 210 ~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa 259 (510)
.+.++++++..|+ +++.++|+.++++++......+..-++|+--|-..
T Consensus 114 r~~~~~~~~~ag~--~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gt 161 (333)
T TIGR00904 114 RRAVKESALSAGA--REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGT 161 (333)
T ss_pred HHHHHHHHHHcCC--CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCe
Confidence 4557777776655 45799999999998755433333334555555444
No 69
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=61.85 E-value=38 Score=37.21 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcc
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQ 477 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~ 477 (510)
+++++|.+=-|.-....+-.+.+..+.. ...|-+.||. -+++.+.+.+.+.+ + .
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~~-----------------~~~i~~~GGg-a~s~~w~Qi~Adv~----g----~ 427 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGDP-----------------LNMIQATGGF-ASSEVWRQMMSDIF----E----Q 427 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------CcEEEEecCc-ccCHHHHHHHHHHc----C----C
Confidence 4555555555555555555554434321 1234455664 37788888887754 3 3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhc
Q 010456 478 HVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 478 ~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
.|.+....+++.+|||++|+.+.
T Consensus 428 pv~~~~~~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 428 EIVVPESYESSCLGACILGLKAL 450 (505)
T ss_pred eeEecCCCCcchHHHHHHHHHhc
Confidence 57666677899999999998766
No 70
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.25 E-value=37 Score=35.54 Aligned_cols=128 Identities=22% Similarity=0.352 Sum_probs=79.9
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCC-----C-----
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEP-----P----- 167 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~-----~----- 167 (510)
.-++||+|-+.++|+-.+-.|+..+. +.+...++|++.+....-.=.+-+++.|++.+.+++..... +
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kL--e~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKL--EKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceee--eeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 46899999999998666533433322 34445789999886544344677888888888776543210 0
Q ss_pred ------C----Cc------cccceeeeecccccccCCceEEEecccce---ecCC-CCCchHHHHHHHHHHhcCCCceEE
Q 010456 168 ------P----IR------RRELGFTFSFPVKQTSVSSGILIKWTKGF---AIES-MVGQEVTESLQRALDKRGLDMRVA 227 (510)
Q Consensus 168 ------~----~~------~l~lGfTFSFPv~q~si~~g~Li~wtKgF---~~~~-~~G~dv~~lL~~al~r~~l~v~V~ 227 (510)
+ ++ ....+--+|||++..+++==+|=...-+= .+-= .--+++++...++++..|+...|+
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 0 00 13467788999998877644443222110 0000 135899999999999999876554
No 71
>PRK13411 molecular chaperone DnaK; Provisional
Probab=59.09 E-value=36 Score=38.96 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.8
Q ss_pred eeEEEEEeCCceeEEEEEE
Q 010456 97 GIYYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~ 115 (510)
+..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3589999999999999875
No 72
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=57.69 E-value=21 Score=40.13 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|+-+..|...++--.| +..+-.. ..-..++-+.||. ..|..++.+++.+ +
T Consensus 293 r~~fe~l~~~l~~~~~~~i~~~l----~~a~~~~-------------~~i~~V~LvGGss--riP~v~~~i~~~f----~ 349 (595)
T TIGR02350 293 RAKFEELTADLVERTKEPVRQAL----KDAGLSA-------------SDIDEVILVGGST--RIPAVQELVKDFF----G 349 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCH-------------hHCcEEEEECCcc--cChHHHHHHHHHh----C
Confidence 44455677777777665554333 2222110 0112455566665 6787777777654 3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
...... + -.+..-..|||+.||..+.
T Consensus 350 ~~~~~~--~-~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 350 KEPNKS--V-NPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred CcccCC--c-CcHHHHHHHHHHHHHHhcC
Confidence 211111 1 2245567899999987654
No 73
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=56.68 E-value=53 Score=36.25 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=33.8
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
|-+.|| .-+++.+.+.+.+.+ + ..|.....++++.+|||++|+...
T Consensus 413 i~~~GG-ga~s~~w~Qi~ADvl----g----~pV~~~~~~e~~alGaA~lA~~~~ 458 (520)
T PRK10939 413 LVFAGG-GSKGKLWSQILADVT----G----LPVKVPVVKEATALGCAIAAGVGA 458 (520)
T ss_pred EEEeCC-cccCHHHHHHHHHhc----C----CeeEEecccCchHHHHHHHHHHHh
Confidence 445566 368888888777754 3 356666678899999999998775
No 74
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=55.75 E-value=36 Score=37.96 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc
Q 010456 208 EVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY 242 (510)
Q Consensus 208 dv~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay 242 (510)
.=.+.+.+|.+..|+ ++..|+|+.+|+.++..+
T Consensus 149 ~qr~~~~~Aa~~agl--~~~~li~Ep~Aaa~~y~~ 181 (602)
T PF00012_consen 149 EQRQALRDAAELAGL--NVLRLINEPTAAALAYGL 181 (602)
T ss_dssp HHHHHHHHHHHHTT---EEEEEEEHHHHHHHHTTT
T ss_pred hhhhccccccccccc--ccceeecccccccccccc
Confidence 334555666666676 457899999999887543
No 75
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=54.44 E-value=2e+02 Score=33.45 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHh-hh
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTD-IL 471 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~-l~ 471 (510)
|+.+-++|.-.-.|+..=.==+ +++-+-.- ..-..+|-++|+. .-|...+-+++++.. -+
T Consensus 333 Re~fEelc~Dl~~r~~~Pi~dA----l~~a~l~l-------------deIn~ViL~Gg~T--RVP~VQe~l~k~v~~~ei 393 (902)
T KOG0104|consen 333 REEFEELCADLEERIVEPINDA----LKKAQLSL-------------DEINQVILFGGAT--RVPKVQETLIKAVGKEEL 393 (902)
T ss_pred HHHHHHHHHHHHHhhhhhHHHH----HHhcCCCh-------------hhhheeEEecCcc--cCchHHHHHHHHHhHHHH
Confidence 4555678888888875433222 23322110 0112567777776 677777777766642 12
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 472 GDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 472 ~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
+ + ..-++++...||++-||--+.
T Consensus 394 ~----k---nlNaDEA~vmGav~~aA~LSk 416 (902)
T KOG0104|consen 394 G----K---NLNADEAAVMGAVYQAAHLSK 416 (902)
T ss_pred h----c---ccChhHHHHHHHHHHHHhhcc
Confidence 2 2 224678889999998887664
No 76
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=53.76 E-value=2.7e+02 Score=28.77 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCCccee
Q 010456 211 ESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNAC 260 (510)
Q Consensus 211 ~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa~ 260 (510)
+.+.++++..|+ +++.++|+.+++.++.-....+..-++|+--|-...
T Consensus 115 ~~l~~a~~~ag~--~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt 162 (335)
T PRK13929 115 RAISDAVKNCGA--KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTT 162 (335)
T ss_pred HHHHHHHHHcCC--CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeE
Confidence 445567765554 556899999999997544333344456655554443
No 77
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=52.03 E-value=53 Score=37.17 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhC
Q 010456 393 RKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILG 472 (510)
Q Consensus 393 ~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~ 472 (510)
+..+.++|+-+..|.-.++--.+ +..+-.. ..-..++-+.||. ..|..++.+++.+ +
T Consensus 281 r~efe~l~~~ll~~i~~~i~~~L----~~a~~~~-------------~~id~ViLvGGss--riP~V~~~l~~~f----~ 337 (599)
T TIGR01991 281 RDEFEALIQPLVQKTLSICRRAL----RDAGLSV-------------EEIKGVVLVGGST--RMPLVRRAVAELF----G 337 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh-------------hhCCEEEEECCcC--CChHHHHHHHHHh----C
Confidence 44455777777777665544333 2222111 0112455666665 7788777777754 3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 473 DDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 473 ~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
...... + ..+..-..|||+.|+..+.
T Consensus 338 ~~~~~~--~-npdeaVA~GAai~a~~l~~ 363 (599)
T TIGR01991 338 QEPLTD--I-DPDQVVALGAAIQADLLAG 363 (599)
T ss_pred CCCCCC--C-CCcHHHHHHHHHHHHHhcc
Confidence 221111 1 2345678899999987653
No 78
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=50.91 E-value=78 Score=34.25 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=34.7
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
|-+.||. -+++.+.+.+.+.+ + ..|.....++++.+|||++|+...-
T Consensus 394 i~~~GG~-s~s~~~~Q~~Adv~----g----~pv~~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 394 IRLIGGG-AKSPAWRQMLADIF----G----TPVDVPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred EEEeccc-cCCHHHHHHHHHHh----C----CceeecCCCcchHHHHHHHHHHhcC
Confidence 5566665 48888888877764 3 2465555788999999999998774
No 79
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=50.60 E-value=74 Score=34.97 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=32.5
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
|.+.||.- +++.+.+.+.+.+ + ..|.....++.+.+|||++|+.+.
T Consensus 410 i~~~GG~a-~s~~w~Qi~Adv~----g----~pV~~~~~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 410 LRVDGGLT-KNKLLMQFQADIL----G----KDIVVPEMAETTALGAALLAGLAV 455 (504)
T ss_pred EEEecccc-cCHHHHHHHHHHh----C----CceEecCcccchHHHHHHHHHhhc
Confidence 44555554 6777777777654 3 356655567889999999999776
No 80
>PRK03657 hypothetical protein; Validated
Probab=50.18 E-value=47 Score=31.45 Aligned_cols=67 Identities=19% Similarity=0.443 Sum_probs=44.1
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeCCceeEEEEEEEcC
Q 010456 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 50 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG----~E~G-~~LalDlGGTN~RV~~V~l~g 118 (510)
+.+|.+.|++ ++.....+|-.|.....++++-.--|-+.. |+| ++.| .|++|...+. ..+-...+.|
T Consensus 71 LgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 71 LSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred cCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 4577777777 777888888888765555677666666654 654 4567 5889987654 4444445544
No 81
>PRK00047 glpK glycerol kinase; Provisional
Probab=49.94 E-value=70 Score=35.07 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=33.9
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
|-+.||. .+++.+.+.+.+.+ + ..|.....++++.+|||++|+.+.
T Consensus 407 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 407 LRVDGGA-VANNFLMQFQADIL----G----VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred EEEecCc-ccCHHHHHHHHHhh----C----CeeEecCcccchHHHHHHHHhhhc
Confidence 4455553 58899888888764 3 356655577899999999998876
No 82
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=48.39 E-value=85 Score=34.83 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=35.3
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.|-+.||..-+++.+.+.+.+.+ + ..|......+++.+|||++|+.+.-
T Consensus 438 ~i~~~GGg~a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 438 ELMAAGGIARKNPVIMQIYADVT----N----RPLQIVASDQAPALGAAIFAAVAAG 486 (536)
T ss_pred eEEEeCCccccCHHHHHHHHHhh----C----CeeEeccCCcchhHHHHHHHHHHcC
Confidence 35577776557888888666654 3 3566556678999999999987663
No 83
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=48.36 E-value=75 Score=32.04 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCCCccchhhhccccchHHH--HHHHHHHhh
Q 010456 309 PNPNDQGFEKMISGMYLGDI--VRRVILRMS 337 (510)
Q Consensus 309 ~nPG~q~fEKmiSG~YLGEi--vR~vl~~l~ 337 (510)
.-||+..-|-|-||.+.|-+ +|..+.+..
T Consensus 177 ~~~gk~T~~aiqsG~v~g~~~~i~~~~~~~k 207 (251)
T COG1521 177 SVPGKNTVEAIQSGVVYGYVGLIEGLLKEIK 207 (251)
T ss_pred ccCCcchHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56788899999999999853 455555544
No 84
>PRK04123 ribulokinase; Provisional
Probab=46.96 E-value=74 Score=35.34 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=35.6
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
.|-+.||..-+++.+.+.+.+.+ + ..|...-..+++.+|||++|+.+.
T Consensus 441 ~i~~~GGg~s~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 441 EVIAAGGIARKNPVLMQIYADVL----N----RPIQVVASDQCPALGAAIFAAVAA 488 (548)
T ss_pred eEEEeCCCcccCHHHHHHHHHhc----C----CceEecCccccchHHHHHHHHHHh
Confidence 35577777668888888777754 3 356555567899999999998765
No 85
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=46.79 E-value=91 Score=34.14 Aligned_cols=46 Identities=22% Similarity=0.440 Sum_probs=33.8
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
|.+.||. -+++.+.+.+.+.+ + ..|.....++++.+|||++|+.+.
T Consensus 403 i~~~GGg-a~s~~w~Qi~ADv~----g----~pv~~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 403 LRVDGGM-TNNNLLMQFQADIL----G----VPVVRPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred EEEeccc-ccCHHHHHHHHHhc----C----CeeEecCCCcchHHHHHHHHHhhc
Confidence 4456664 38888888888764 3 346555567899999999998876
No 86
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=46.15 E-value=1.7e+02 Score=32.21 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcc
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQ 477 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~ 477 (510)
+++++|.+=.|.-.+-++-.+.+..+.. . ..|-+.||-- +++.+.+.+.+.+ + .
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~~----------------~-~~i~~~GGga-rs~~w~Qi~Ad~~----g----~ 427 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGKP----------------P-SRVRVVGGGA-RSPLWLQILADAL----G----L 427 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----------------c-cEEEEECCcc-cCHHHHHHHHHHc----C----C
Confidence 5667777766666666666555544541 1 2344555553 6688888887754 3 3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhc
Q 010456 478 HVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 478 ~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
.|......+.+..|+|++++.+.
T Consensus 428 ~v~~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 428 PVVVPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred eeEecCcccchHHHHHHHHHHHh
Confidence 56665667888777777776665
No 87
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=45.55 E-value=76 Score=35.96 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.6
Q ss_pred eeEEEEEeCCceeEEEEEE
Q 010456 97 GIYYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~ 115 (510)
...++||||-||-.|+...
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999999874
No 88
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=44.93 E-value=3.5e+02 Score=27.64 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhccccCCCCceEEEEeeCC
Q 010456 210 TESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTG 256 (510)
Q Consensus 210 ~~lL~~al~r~~l~v~V~alvNDTVgTlla~ay~~~~~~iglIlGTG 256 (510)
.+.+++++++.|+ +++.++|+.++++++.........-++|+--|
T Consensus 112 r~~~~~a~~~ag~--~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 112 RRAVRESALGAGA--REVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHcCC--CeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 3567777776654 55789999999988754432222223444444
No 89
>PRK15027 xylulokinase; Provisional
Probab=43.44 E-value=1.2e+02 Score=33.23 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEechHHHHhccccCCCCceEEEEeeCCc
Q 010456 210 TESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGT 257 (510)
Q Consensus 210 ~~lL~~al~r~~l~-v~V~alvNDTVgTlla~ay~~~~~~iglIlGTGt 257 (510)
+.+-.++=++-|++ +.|++=.-|+.+..++.--.. ...+.+++||+.
T Consensus 210 G~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~ 257 (484)
T PRK15027 210 GALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVD-ANQAMLSLGTSG 257 (484)
T ss_pred ccccHHHHHHhCCCCCeEEecccHHHHHHhccCccc-CCcEEEEecCce
Confidence 33333333344764 777888889999998665333 355778889974
No 90
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=41.18 E-value=1.1e+02 Score=34.52 Aligned_cols=175 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred eeEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChh-HHHHHHHHHHHHHHhhcCCCCCCCCCccccce
Q 010456 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSE-DLFDFIASALQQFVEKEGNGSEPPPIRRRELG 175 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~-~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG 175 (510)
..+++||||-||-=|+.++-++ .-.++.-......+|.-+--.... .++.+-|..- +......... ..+..+|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q--~~~~p~~t~~---~~kr~~G 78 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQ--AVDNPENTIF---SIKRKIG 78 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHH--hhhCCcceEE---EEehhcC
Q ss_pred eeeecccccccCCceEEEecccceecCCCCCchHHHHHHH------------------------------HHHhcCCCce
Q 010456 176 FTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQR------------------------------ALDKRGLDMR 225 (510)
Q Consensus 176 fTFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~------------------------------al~r~~l~v~ 225 (510)
.. ..........++|-|...+....-+..+.++ |....|+++-
T Consensus 79 ~~-------~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vl 151 (579)
T COG0443 79 RG-------SNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVL 151 (579)
T ss_pred CC-------CCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeE
Q ss_pred EEEEEechHHHHhccccCCCCceEEEEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCc------CCCCCCCCc
Q 010456 226 VAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNF------WSSHLPRTS 299 (510)
Q Consensus 226 V~alvNDTVgTlla~ay~~~~~~iglIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f------~~~~lp~T~ 299 (510)
.++|+.+|..++-.+.......=+|+-=|-..--+- +|..+||.| |+.+|-=..
T Consensus 152 --rlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvS------------------ll~~~~g~~ev~at~gd~~LGGdd 211 (579)
T COG0443 152 --RLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVS------------------LLEIGDGVFEVLATGGDNHLGGDD 211 (579)
T ss_pred --EEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEE------------------EEEEcCCEEEEeecCCCcccCchh
Q ss_pred ccccc
Q 010456 300 YDIDL 304 (510)
Q Consensus 300 ~D~~l 304 (510)
||..|
T Consensus 212 fD~~l 216 (579)
T COG0443 212 FDNAL 216 (579)
T ss_pred HHHHH
No 91
>PRK10331 L-fuculokinase; Provisional
Probab=41.17 E-value=1.2e+02 Score=32.98 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.5
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
|-+.||- -+++.+.+.+.+.+ + ..|.....++++.+|||++|+++.-
T Consensus 393 i~~~GGg-a~s~~w~Qi~Advl----g----~pV~~~~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 393 LLLVGGG-SRNALWNQIKANML----D----IPIKVLDDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred EEEEccc-ccCHHHHHHHHHhc----C----CeeEecCcccchHHHHHHHHHHhcC
Confidence 3345553 48888888877754 3 3565556678999999999998763
No 92
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=40.72 E-value=71 Score=32.12 Aligned_cols=175 Identities=19% Similarity=0.196 Sum_probs=90.5
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcCCCCCCCCCcccc-cee
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRE-LGF 176 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~-lGf 176 (510)
.-+|||+|||=.+|..-.... .+. .|.+-++ ..-+++.+|++.-|.+..+.-..... -.. =|=
T Consensus 19 ~~vaiDiGGtLaKvv~sp~~s-----nrl---~F~t~eT---~kId~~ve~l~~li~~h~k~C~~~~~-----liatGGg 82 (342)
T COG5146 19 MKVAIDIGGTLAKVVQSPSQS-----NRL---TFKTEET---KKIDQVVEWLNNLIQQHEKLCLTKIT-----LIATGGG 82 (342)
T ss_pred EEEEEecCceeeeeeeCcccc-----cce---eeehHhh---hhHHHHHHHHHHHHHHHHhhhhheee-----EEecCCc
Confidence 358999999988875511110 111 1332222 23577888888776665432110000 000 011
Q ss_pred eeecccccccCCceEEEecccceecCCCCCchHHHHHHHHHHh--cCCCceEEEEEechHHHHh----ccccCCCCceEE
Q 010456 177 TFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDK--RGLDMRVAALVNDTVGTLA----LGHYHDEDTVAA 250 (510)
Q Consensus 177 TFSFPv~q~si~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r--~~l~v~V~alvNDTVgTll----a~ay~~~~~~ig 250 (510)
.|-| --++.|.|+++ +...+-.+.|..-|.- .++|-+| .+.||..+-.+ .+.|.+-...+=
T Consensus 83 a~kf-----------yd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~ev-Fv~~d~~~e~~~~~~~~~~h~lypyil 149 (342)
T COG5146 83 AYKF-----------YDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAEV-FVEFDAASEGLGILLKEQGHDLYPYIL 149 (342)
T ss_pred chhh-----------HHHHhhhccce-eeecchHHHHHhcccceeeeccHHH-eeeeccccchhhhhhhhccccccceee
Confidence 1111 11356666665 5555554555444422 1233333 56788765443 344444467788
Q ss_pred EEeeCCcceeeEcccCccccccCCCCCCCcEEEeeccCCcCCCCCCCCccccccccC
Q 010456 251 VIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAE 307 (510)
Q Consensus 251 lIlGTGtNa~Y~e~~~~I~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~lD~~ 307 (510)
+=+|+|+-.-|+...++.....|.. -.+- |=||..- ---+.|.||..+|-.
T Consensus 150 vNiGsGvSilkvtgpsqf~RvGGss-lGGG----tlwGLls-Llt~a~~ydqmld~a 200 (342)
T COG5146 150 VNIGSGVSILKVTGPSQFERVGGSS-LGGG----TLWGLLS-LLTQATDYDQMLDMA 200 (342)
T ss_pred EeccCCeEEEEecCcchhccccccc-cCcc----hHHHHHH-HHcccccHHHHHHHH
Confidence 8899999988887655554444321 1122 3466541 113678899888753
No 93
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.59 E-value=63 Score=33.34 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhhhCCC
Q 010456 395 LIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDILGDD 474 (510)
Q Consensus 395 ~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~ 474 (510)
++.-||++|.+|- +.++++.+. . -.|.+.|++ -++|.+++.+++.+ +.
T Consensus 218 I~aGl~~sia~rv--------~~~~~~~~i-~-----------------~~v~~~GGv-a~N~~l~~al~~~L----g~- 265 (293)
T TIGR03192 218 VIAAYCQAMAERV--------VSLLERIGV-E-----------------EGFFITGGI-AKNPGVVKRIERIL----GI- 265 (293)
T ss_pred HHHHHHHHHHHHH--------HHHhcccCC-C-----------------CCEEEECcc-cccHHHHHHHHHHh----CC-
Confidence 6778999999983 334444432 1 125789997 57888888777755 31
Q ss_pred CcccEE-E-EEcCCcchHHHHHHHHH
Q 010456 475 IAQHVI-L-KVTEDGSGIGAALLAAS 498 (510)
Q Consensus 475 ~~~~v~-l-~~s~DgSgiGAAl~Aa~ 498 (510)
.|. + ....--+.+|||++|.-
T Consensus 266 ---~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 266 ---KAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred ---CceeCCCCccHHHHHHHHHHHHH
Confidence 222 1 11233456788888743
No 94
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=40.52 E-value=1.2e+02 Score=33.68 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=34.8
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
.|-+.||. -+.+.+.+.+.+.+ + ..|+....++++.+|||++|+.+.
T Consensus 446 ~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 446 SIFMSGGQ-CQNPLLMQLIADAC----D----MPVLIPYVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred EEEEecCc-ccCHHHHHHHHHHH----C----CeeEecChhHHHHHHHHHHHHHhc
Confidence 35577775 58888888777754 3 356666677889999999998765
No 95
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=39.91 E-value=2.1e+02 Score=26.77 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=33.4
Q ss_pred EEEEEeCCceeEEEEEEEcCCc-ceeeeeeeeeecCCcc-ccccChhHHHHHHHHHHHHHHhh
Q 010456 99 YYALDLGGTNFRVLRVQLGGQR-SSILSSDVERQPIPPE-LMTGTSEDLFDFIASALQQFVEK 159 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~-~~i~~~~~~~~~Ip~~-~~~~~~~~lFd~IA~~i~~fl~~ 159 (510)
|.+||+|-|+++++..+..+++ -.+.... ..|.. +..|.-.+ .+-+++.|.+.+++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~ 58 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEE 58 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHH
Confidence 5799999999999999886443 2333321 22433 44543222 34556666666654
No 96
>PRK13317 pantothenate kinase; Provisional
Probab=37.74 E-value=1.5e+02 Score=30.13 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=30.6
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHH
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAA 497 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa 497 (510)
.|.+.|+-+.++|.+++.+.+.++. +. ..-+..+...--..+|||+.+.
T Consensus 225 ~Ivf~G~gla~n~~l~~~l~~~l~~--~~--~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 225 NIVYIGSTLTNNPLLQEIIESYTKL--RN--CTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred eEEEECcccccCHHHHHHHHHHHhc--CC--ceEEecCCCchhHHHHHHHHhh
Confidence 5779998778999999988876542 11 1112233334455677877653
No 97
>PLN02295 glycerol kinase
Probab=35.99 E-value=1.5e+02 Score=32.76 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=34.9
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
.|-+.||. .+++.+.+.+.+.+ + ..|.....++++.+|||++|+.+.-
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQADLL----G----SPVVRPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHHhc----C----CceEecCccccHHHHHHHHHHhhcC
Confidence 35566664 58888888887754 3 3565555678999999999987763
No 98
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=35.80 E-value=99 Score=34.40 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=37.7
Q ss_pred EEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhccc
Q 010456 445 VVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSSY 502 (510)
Q Consensus 445 ~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~~ 502 (510)
++.++||+ -++|.|.+...+.+ | ..|.+-..-|..++|||++|++++..
T Consensus 417 ~L~~~GG~-s~N~ll~Q~~ADi~----g----~pv~~p~~~e~~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 417 TLRVCGGL-SKNPLLMQLQADIL----G----LPVVRPQDVEAVALGAAMLAGAASGK 465 (516)
T ss_pred eeeecccc-ccCHHHHHHHHHHh----C----CccccccchhHHHHHHHHHHHhhcCC
Confidence 47899998 58889988887754 3 24555555577999999999999874
No 99
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=35.40 E-value=98 Score=30.80 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=29.5
Q ss_pred EEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHH
Q 010456 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIAS 151 (510)
Q Consensus 100 LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~ 151 (510)
|++|+|=||+.+++.+ ++ +++.. |.+|.+... +.+++..++..
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~~~----~r~~t~~~~-t~de~~~~l~~ 44 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVYQF----WRLATNLMK-TYDEHSEFLKE 44 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEEEE----EEecCCCcc-ChHHHHHHHHH
Confidence 7899999999999986 22 33332 677766654 56776655543
No 100
>PRK10854 exopolyphosphatase; Provisional
Probab=34.88 E-value=1.5e+02 Score=32.81 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=45.1
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccc-cC-hhHHHHHHHHHHHHHHhh
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMT-GT-SEDLFDFIASALQQFVEK 159 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~-~~-~~~lFd~IA~~i~~fl~~ 159 (510)
.|=+||+|-.++|..+++..++..+++....+...+.+.+.. +. .++-.+-..+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 577999999999999999865444555555555677666533 22 467788888999998664
No 101
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=33.91 E-value=1.9e+02 Score=31.46 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=33.0
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
|-+.||- -+++.+.+.+.+.+ + ..|.....++++.+|||++|+.+.-
T Consensus 397 i~~~GGg-a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 397 LLLVGGG-SKNTLWNQIRANML----D----IPVKVVDDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred EEEecCc-cCCHHHHHHhhhhc----C----CeeEeccCCcchHHHHHHHHHHhcC
Confidence 4444443 48888888777654 3 3565555678899999999998763
No 102
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=33.58 E-value=4e+02 Score=26.99 Aligned_cols=46 Identities=26% Similarity=0.186 Sum_probs=36.8
Q ss_pred EEEEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHH
Q 010456 444 TVVAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAA 493 (510)
Q Consensus 444 ~~I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAA 493 (510)
..++.-=|-+.-.+.=++++.+.+...+|. +|.+...-|.|.+|..
T Consensus 200 ~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~----~V~l~~~VDpsLIGGi 245 (271)
T PRK13430 200 RSVATVTTAVPLSDEQKQRLAAALSRIYGR----PVHLNSEVDPSVLGGM 245 (271)
T ss_pred eeEEEEEecCCCCHHHHHHHHHHHHHHHCC----ceEEEeeECccccCcE
Confidence 556666677888889999999999988874 5777777799999864
No 103
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=33.35 E-value=56 Score=35.20 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCccceeEEEEEeCCceeEEEEEE
Q 010456 92 TGSEKGIYYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 92 tG~E~G~~LalDlGGTN~RV~~V~ 115 (510)
.+..+|.|++||+|+|+.++.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 356678999999999999998875
No 104
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=33.26 E-value=33 Score=24.02 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCCCCccchhhhccccchHHHHHHHHHHhh
Q 010456 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMS 337 (510)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~vl~~l~ 337 (510)
++||.+|+.|-=-+..|+|-++=-++.-+.
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHHh
Confidence 579999999999999999998877776543
No 105
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=33.08 E-value=91 Score=32.35 Aligned_cols=59 Identities=17% Similarity=0.379 Sum_probs=33.8
Q ss_pred EEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcC
Q 010456 101 ALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 101 alDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
+||+|-.++|++.++-.+++..+. ..-..++|+.......-.=.+.+++.|.+.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~--~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~ 59 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLE--AFASIPLPPGAISDGEIVDPEALAEALKELLKENK 59 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEE--EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT
T ss_pred CeecCCCeEEEEEEEEcCCccEEE--EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcC
Confidence 689999999998887755433333 23347888876542211224567777777777654
No 106
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=32.10 E-value=39 Score=34.70 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=19.6
Q ss_pred ceeEEEEEeCCceeEEEEEEEcC
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g 118 (510)
...|+++|=|.||||+-+++-+|
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 45799999999999999886654
No 107
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=31.82 E-value=47 Score=23.43 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCCCCccchhhhccccchHHHHHHHHHHhh
Q 010456 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMS 337 (510)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~vl~~l~ 337 (510)
.+||.+|+.|-=-...|+|-++=-++.-+.
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vLF 33 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGILF 33 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHHH
Confidence 579999999999999999998877776543
No 108
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=31.66 E-value=1.6e+02 Score=30.16 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=41.1
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccc-cC-hhHHHHHHHHHHHHHHhh
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMT-GT-SEDLFDFIASALQQFVEK 159 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~-~~-~~~lFd~IA~~i~~fl~~ 159 (510)
|=+||+|-.++|..++++.+....++........+.+.+.. +. .++-.+-+.++|.+|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999864333444444444667666522 22 356667777888888764
No 109
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=31.57 E-value=98 Score=33.48 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHh
Q 010456 394 KLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTD 469 (510)
Q Consensus 394 ~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~ 469 (510)
.++.-+|++|.+|.+.+ +.+..... -.|.+.||+- +++.+.+.+++.+++
T Consensus 358 DIaAGL~~SIA~Rv~s~--------l~r~~~i~-----------------~~VvftGGvA-~N~gvv~aLe~~L~~ 407 (432)
T TIGR02259 358 DILAGLHRAIILRAISI--------ISRSGGIT-----------------DQFTFTGGVA-KNEAAVKELRKLIKE 407 (432)
T ss_pred HHHHHHHHHHHHHHHHH--------HhcccCCC-----------------CCEEEECCcc-ccHHHHHHHHHHHcc
Confidence 35568999999987765 34442211 2477999985 788888888887653
No 110
>PRK13320 pantothenate kinase; Reviewed
Probab=31.27 E-value=1.1e+02 Score=30.64 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=16.1
Q ss_pred EEEEEeCCceeEEEEEE
Q 010456 99 YYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~ 115 (510)
+|+||+|-|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999987
No 111
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=31.02 E-value=4.4e+02 Score=28.31 Aligned_cols=55 Identities=27% Similarity=0.422 Sum_probs=36.5
Q ss_pred ceEEEEEEee--EeeecHhHHHHHHHHHHhh-hCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 442 RRTVVAIEGG--LYSSYTLFREYLHEALTDI-LGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 442 ~~~~I~vdGs--l~~~~p~f~~~l~~~l~~l-~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
+...||+.|- +-.+-|. ++.+++.++ +.++..++|.| .+||=..|||+.|.|-..
T Consensus 365 ~~t~iGiTGRAgItG~KP~---lIle~l~~~~~~d~~~~~vvF--vdDGLArGAavMaRCMNs 422 (448)
T PF09887_consen 365 PKTAIGITGRAGITGKKPE---LILEYLEELGIYDDPFDNVVF--VDDGLARGAAVMARCMNS 422 (448)
T ss_pred CCceeeeeccccccCCChH---HHHHHHHhcccccCcccceEE--eccchhhhHHHHHHHHHh
Confidence 4567888874 3344454 455666665 55555555555 589999999999987544
No 112
>CHL00038 psbL photosystem II protein L
Probab=29.61 E-value=56 Score=23.00 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCCCCccchhhhccccchHHHHHHHHHHhh
Q 010456 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMS 337 (510)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~vl~~l~ 337 (510)
.+||.+|+.|-=-...|+|-++=-++.-+.
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 569999999999999999998877776553
No 113
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=29.61 E-value=41 Score=37.06 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=44.8
Q ss_pred eee-eecccccccC--------CceEEEecccceecCCCCCchHHHHHHHHHHhcCCCceEEEEEech----HHHHhccc
Q 010456 175 GFT-FSFPVKQTSV--------SSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDT----VGTLALGH 241 (510)
Q Consensus 175 GfT-FSFPv~q~si--------~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~V~alvNDT----VgTlla~a 241 (510)
+++ |.||+..... .+..+++=++ -......-++++|++++.+.|+|-.++.++..+ +..|+.
T Consensus 110 ~I~P~n~P~~~~~~k~~~AL~aGNaVIlKps~---~a~~s~~~~~~~l~~~l~eaGlP~gvv~~v~g~~~e~~~~L~~-- 184 (488)
T TIGR02518 110 GLIPSTNPTSTAIYKTLISIKARNAIVFSPHP---NAKKCIIETVKLMRKAAEEAGAPEGAIGCITVPTIEGTNELMK-- 184 (488)
T ss_pred EEcccCChHHHHHHHHHHHHHcCCcEEEECCc---cchHHHHHHHHHHHHHHHHcCcCcccEEEEcCCCHHHHHHHHh--
Confidence 345 6777643322 3445555442 122345667888999999999998888888742 233333
Q ss_pred cCCCCceEEEEeeCCcce
Q 010456 242 YHDEDTVAAVIIGTGTNA 259 (510)
Q Consensus 242 y~~~~~~iglIlGTGtNa 259 (510)
+++ |.+|+-||..+
T Consensus 185 --~~~--vd~V~fTGs~~ 198 (488)
T TIGR02518 185 --NKD--TSLILATGGEA 198 (488)
T ss_pred --CCC--cCEEEEeCCHH
Confidence 222 55666666554
No 114
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.46 E-value=94 Score=35.83 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCCcceeecc--------cccCCC------------------CccceeEEEEEeCCce
Q 010456 56 RLRQVVDAMAVEMHAGLASEG-GSKLKMLLTF--------VDNLPT------------------GSEKGIYYALDLGGTN 108 (510)
Q Consensus 56 ~L~~i~~~f~~em~~gL~~~~-~s~l~MlPs~--------v~~lPt------------------G~E~G~~LalDlGGTN 108 (510)
.|..+.++|.+.+++.|...+ +..+.|+-|. ....|. |...|..+++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 567788888888888775432 1223333221 112233 5566679999999999
Q ss_pred eEEEEEEE
Q 010456 109 FRVLRVQL 116 (510)
Q Consensus 109 ~RV~~V~l 116 (510)
.-|+++.-
T Consensus 290 tDva~i~~ 297 (674)
T COG0145 290 TDVALIID 297 (674)
T ss_pred eeeeeeec
Confidence 99999864
No 115
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=29.37 E-value=99 Score=31.66 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=0.0
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHH
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQF 156 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~f 156 (510)
.++||+|||..+++....++ ++.-..++...++ ++.+|+-+....+
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~---~~~f~~~~~~~~~---------~~~~~l~~~~~~~ 47 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKG---RRKFKTFETTNID---------KFIEWLKNQIHRH 47 (279)
T ss_pred eEEEEeCcceEEEEEEcCCC---cEEEEEeecccHH---------HHHHHHHHHHHhh
No 116
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.26 E-value=1.4e+02 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=42.3
Q ss_pred EEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHHHHHHHHhhcC
Q 010456 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEG 161 (510)
Q Consensus 99 ~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (510)
..+++|=|+..++|++.+.+....+......++.+++.- +.+++=+|. ..++.|++++.
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~ 61 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYK 61 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcC
Confidence 568999999999999998766556666666678887754 345555544 44677777765
No 117
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=29.18 E-value=1.1e+02 Score=34.08 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred cceeEEEEEeCCceeEEEEEEEcCC
Q 010456 95 EKGIYYALDLGGTNFRVLRVQLGGQ 119 (510)
Q Consensus 95 E~G~~LalDlGGTN~RV~~V~l~g~ 119 (510)
..+.++.+|+||+++-|.+++...+
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cccceeccccccceEeeeehhcccc
Confidence 4568999999999999999998643
No 118
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=28.43 E-value=2.3e+02 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=30.1
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHS 500 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~ 500 (510)
|-+.||- -+++.+.+.+.+.+ + ..|.... .+++.+|||++|+++.
T Consensus 379 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~-~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 379 LHIVGGG-CQNALLNQLCADAC----G----IRVIAGP-VEASTLGNIGIQLMTL 423 (471)
T ss_pred EEEECCh-hhhHHHHHHHHHHh----C----CCeeeCC-hhHHHHHHHHHHHHHc
Confidence 4455554 57777877777754 3 2453322 3689999999999876
No 119
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.97 E-value=5.9e+02 Score=27.32 Aligned_cols=54 Identities=28% Similarity=0.435 Sum_probs=35.8
Q ss_pred ceEEEEEEee--EeeecHhHHHHHHHHHHhh-hCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 442 RRTVVAIEGG--LYSSYTLFREYLHEALTDI-LGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 442 ~~~~I~vdGs--l~~~~p~f~~~l~~~l~~l-~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
+...||+.|- .-.+-|. ++.+++.++ +.++ .++|.| .+||=..|||+.|.|-..
T Consensus 362 ~~t~iGiTGRAgITG~KP~---lIle~l~~~~~~d~-~d~vVF--vdDGLA~GAavMaRCMNs 418 (445)
T TIGR03285 362 EKTTLGITGRAGITGYKPE---LILEYLKNSFLWDK-EENVVF--VDDGLALGAAVMARCMNS 418 (445)
T ss_pred CCCeeeeeeccccCCCChH---HHHHHHHhccccCC-CCcEEE--eccchhhhHHHHHHHHhc
Confidence 4577888884 3344454 455666665 4444 455555 589999999999987554
No 120
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=27.89 E-value=1.4e+02 Score=30.41 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHH
Q 010456 394 KLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALT 468 (510)
Q Consensus 394 ~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~ 468 (510)
+++.-+|++|.+|.+.+ +++++.. .-.|.+.||+ -+++.+.+.+++.+.
T Consensus 188 dI~aGl~~sia~r~~~~--------~~~~~~~-----------------~~~v~~~GGv-a~n~~~~~~le~~l~ 236 (262)
T TIGR02261 188 NILKGIHESMADRLAKL--------LKSLGAL-----------------DGTVLCTGGL-ALDAGLLEALKDAIQ 236 (262)
T ss_pred HHHHHHHHHHHHHHHHH--------HhccCCC-----------------CCcEEEECcc-cccHHHHHHHHHHhc
Confidence 45668888888886544 3444331 1247789996 578888888888764
No 121
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=27.48 E-value=2.3e+02 Score=30.58 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=30.9
Q ss_pred EEEEeeEeeecHhHHHHHHHHHHhhhCCCCcccEEEEEcCCcchHHHHHHHHHhcc
Q 010456 446 VAIEGGLYSSYTLFREYLHEALTDILGDDIAQHVILKVTEDGSGIGAALLAASHSS 501 (510)
Q Consensus 446 I~vdGsl~~~~p~f~~~l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa~~~~ 501 (510)
|-+.||- -+.+.+.+.+.+.+ + ..|... .++++.+|||++|+.+.-
T Consensus 391 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~-~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 391 LHIVGGG-SQNAFLNQLCADAC----G----IRVIAG-PVEASTLGNIGVQLMALD 436 (454)
T ss_pred EEEECCh-hhhHHHHHHHHHHh----C----CceEcC-CchHHHHHHHHHHHHhcC
Confidence 3355553 47777877777754 3 245433 366889999999998774
No 122
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=27.08 E-value=1.3e+02 Score=28.42 Aligned_cols=67 Identities=28% Similarity=0.553 Sum_probs=46.3
Q ss_pred CCCHHHHH---HHHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeCCceeEEEEEEEcCC
Q 010456 51 ETTVSRLR---QVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLGGQ 119 (510)
Q Consensus 51 ~~~~~~L~---~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG----~E~G-~~LalDlGGTN~RV~~V~l~g~ 119 (510)
.++.+.|. .|+..-..||-.|.....++++-.=-|-|.. |+| ++.| .|+++..|| ..-+-+++++|+
T Consensus 66 gV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~-~~~~~~~~~~g~ 140 (162)
T COG1546 66 GVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGG-EAITIRVNFGGD 140 (162)
T ss_pred CCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCC-ceEEEEEEcCCC
Confidence 46666664 4788888899999876666777777777764 874 3567 588899944 444456667664
No 123
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=26.82 E-value=1.4e+02 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 010456 37 KRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHA 70 (510)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 70 (510)
..++++++.+.+.|.++.+.+++=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999998875
No 124
>PRK13411 molecular chaperone DnaK; Provisional
Probab=26.39 E-value=1.6e+02 Score=33.68 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.2
Q ss_pred cceeEEEEEeCCceeEEEEEEEcCC
Q 010456 95 EKGIYYALDLGGTNFRVLRVQLGGQ 119 (510)
Q Consensus 95 E~G~~LalDlGGTN~RV~~V~l~g~ 119 (510)
+.+.++.+||||.+|-|.++++.+.
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeCC
Confidence 3457999999999999999999653
No 125
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=26.23 E-value=1.5e+02 Score=33.30 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.3
Q ss_pred ceeEEEEEeCCceeEEEEEEEcC
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g 118 (510)
...++.+|+||.+|-|.++++.+
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~ 204 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD 204 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC
Confidence 45789999999999999999965
No 126
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=26.17 E-value=46 Score=34.74 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010456 395 LIVKICDVVTRRAARLAAAGIVGILKKIGR 424 (510)
Q Consensus 395 ~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~ 424 (510)
.+.+++..|.+.+....+.+|--+..+.+.
T Consensus 249 ~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~ 278 (318)
T TIGR03123 249 DVRNLAKYYYEAQLEQLTEAIEEVLERYGL 278 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455788888888888888888777775443
No 127
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=25.40 E-value=1.7e+02 Score=31.66 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCc--cceeEEEEEeCCceeEEEEE
Q 010456 37 KRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGS--EKGIYYALDLGGTNFRVLRV 114 (510)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG~--E~G~~LalDlGGTN~RV~~V 114 (510)
+.++++.+.+--+.-.|.-+|..|...+. +-||.-.+ ++|++.-.--.++-.|. -.+.|++ |-||.+--
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 87 (404)
T TIGR03286 17 PEIEKAAEKVGAEIIFPEVDLDYIDEACR---DFGLTVKS-GDLKLMIARAMALVEGYTEADAVFIA-----TCFRCAEG 87 (404)
T ss_pred HHHHHHHHHcCCEEEcccccHHHHHHHHH---HhCcccCC-CchHHHHHHHHHHhcCCcccceEEEe-----ehhcccch
Confidence 34556666665555567777777666543 35776543 45655443333444443 3466774 67887653
No 128
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=24.74 E-value=1.4e+02 Score=32.26 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHH
Q 010456 388 VPLKVRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEAL 467 (510)
Q Consensus 388 ~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l 467 (510)
.+..|.+.++ +|=.=+.||+-.++++.+-... .--.|-+-|++ -.|-.-. .++
T Consensus 295 itq~DIr~~q--------lAKaAi~aGi~~Ll~~agi~~~--------------di~~v~lAG~F-G~~l~~~----~a~ 347 (412)
T PF14574_consen 295 ITQKDIREFQ--------LAKAAIRAGIEILLEEAGISPE--------------DIDRVYLAGGF-GNYLDPE----SAI 347 (412)
T ss_dssp EEHHHHHHHH--------HHHHHHHHHHHHHHHHTT--GG--------------G--EEEEECSS--SEEEHH----HHH
T ss_pred EeHHHHHHHH--------HHHHHHHHHHHHHHHHcCCCHH--------------HccEEEEeCcc-cccCCHH----HHh
Confidence 4566766554 2222345677777787764211 11235566665 4443333 333
Q ss_pred H-hhhCCCCcccEEEEEcCCcchHHHHHHHH
Q 010456 468 T-DILGDDIAQHVILKVTEDGSGIGAALLAA 497 (510)
Q Consensus 468 ~-~l~~~~~~~~v~l~~s~DgSgiGAAl~Aa 497 (510)
+ -|+|+....+|+ ...++++.||.++..
T Consensus 348 ~iGLlP~~~~~kv~--~~GN~al~GA~~~Ll 376 (412)
T PF14574_consen 348 RIGLLPDVPAEKVR--FVGNAALAGARMALL 376 (412)
T ss_dssp HTTSS--S-GGGEE--EEC-HHHHHHHHHHH
T ss_pred hcCCCCCccccCEE--EECcHHHHHHHHHhC
Confidence 3 356665445554 457999999987654
No 129
>PRK07058 acetate kinase; Provisional
Probab=24.50 E-value=3e+02 Score=29.66 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHHHHHHHHhh
Q 010456 398 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREYLHEALTDI 470 (510)
Q Consensus 398 ~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~l~~~l~~l 470 (510)
..-++.+.|.+++.++-.+++ ..+ -.|...||+=|+.+..|+.+.+.+.-+
T Consensus 296 lA~d~f~yri~k~IGa~~a~L-g~v---------------------DaiVfTGGIgEns~~vr~~i~~~l~~l 346 (396)
T PRK07058 296 EALDLFALRIAGEIARLAATL-GGL---------------------DAVVFTAGIGEHQPAIRAAVCERLAWL 346 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCC---------------------CEEEECCccccCcHHHHHHHHhhhhhh
Confidence 344566778888887776665 322 247799999999999999999998754
No 130
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=24.19 E-value=2.5e+02 Score=31.06 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=43.8
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCcccc-ccC-hhHHHHHHHHHHHHHHhh
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGT-SEDLFDFIASALQQFVEK 159 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~-~~~-~~~lFd~IA~~i~~fl~~ 159 (510)
.|=+||+|-.++|..+++..+....++....+...+.+.+. +|. .++=.+-..+++..|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999985544345544445567765543 222 457788888999999764
No 131
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=23.77 E-value=1.6e+02 Score=24.65 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010456 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (510)
Q Consensus 40 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 75 (510)
.++++.+.+...+|..+...+.+.|.++|...|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356667777778999999999999999999999764
No 132
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=23.70 E-value=1.7e+02 Score=24.39 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010456 41 GVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (510)
Q Consensus 41 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 75 (510)
++++.+.+...++..+...+.+.|.+.|...|..+
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666666778999999999999999999999864
No 133
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=23.31 E-value=51 Score=32.46 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.0
Q ss_pred HHHHhccccCCCCceEEEEeeC
Q 010456 234 VGTLALGHYHDEDTVAAVIIGT 255 (510)
Q Consensus 234 VgTlla~ay~~~~~~iglIlGT 255 (510)
+|.|.|.+-.|+++.+|.-+++
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~ 94 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVD 94 (230)
T ss_pred HHHHHHHhccCcccceeeEEEc
Confidence 7888888889999999943333
No 134
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=22.97 E-value=1.8e+02 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010456 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (510)
Q Consensus 40 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 75 (510)
.++++++.+...++..+...+.+.|.++|...|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777777888999999999999999999999863
No 135
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=22.62 E-value=1.8e+02 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010456 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (510)
Q Consensus 40 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 75 (510)
.++++.+.+.+.++..+...+.+.|.++|...|+..
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999864
No 136
>CHL00094 dnaK heat shock protein 70
Probab=22.61 E-value=1.8e+02 Score=32.97 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred eeEEEEEeCCceeEEEEEEEcC
Q 010456 97 GIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g 118 (510)
..++.+||||.+|-|.++++++
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~ 208 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGD 208 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcC
Confidence 4689999999999999999964
No 137
>PF13941 MutL: MutL protein
Probab=22.58 E-value=97 Score=33.99 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=22.9
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeee
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSS 126 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~ 126 (510)
.||++|+|.|.-|+.+|++.....+++-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~ 29 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ 29 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE
Confidence 48999999999999999965555555554
No 138
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=22.51 E-value=1.6e+02 Score=27.01 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=35.0
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEe
Q 010456 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDL 104 (510)
Q Consensus 50 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG----~E~G-~~LalDl 104 (510)
+.+|.+.|++ ++.....+|-+|..+..++++----|-+.. |+| ++.| .|++|-.
T Consensus 53 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 53 LGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred hCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 3567777776 777788888877765445666655555543 543 4566 4777765
No 139
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=22.34 E-value=2.2e+02 Score=32.34 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.9
Q ss_pred eeEEEEEeCCceeEEEEEEEcC
Q 010456 97 GIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 97 G~~LalDlGGTN~RV~~V~l~g 118 (510)
..++.+|+||.+|-|.++++.+
T Consensus 185 ~~vlV~D~GggT~dvsv~~~~~ 206 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEIGD 206 (627)
T ss_pred CEEEEEECCCCeEEEEEEEEeC
Confidence 5699999999999999999965
No 140
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.13 E-value=81 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.6
Q ss_pred eEEEEEeCCceeEEEEEE
Q 010456 98 IYYALDLGGTNFRVLRVQ 115 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~ 115 (510)
..|.+|+|||+.-|+++.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999985
No 141
>PRK13326 pantothenate kinase; Reviewed
Probab=21.96 E-value=2e+02 Score=29.07 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=30.2
Q ss_pred eEEEEEeCCceeEEEEEEEcCCcceeeeeeeeeecCCccccccChhHHHHHHHH
Q 010456 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIAS 151 (510)
Q Consensus 98 ~~LalDlGGTN~RV~~V~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~ 151 (510)
-.|+||+|=||..+++.+ ++ +++. .|+++.+.. .+.++++.++..
T Consensus 7 ~~L~IDiGNT~ik~glf~-~~---~l~~----~~r~~t~~~-~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK-DN---KMQI----FCKLKTKLD-LSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE-CC---EEEE----EEEeccCCC-CCHHHHHHHHhc
Confidence 479999999999999986 22 2333 266665443 356777766643
No 142
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=21.82 E-value=1.4e+02 Score=31.77 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=56.4
Q ss_pred chhhhccccchHHHHHHHHHHhhhcC-CCCC-CCchhhccCCCCChhhhhhh----ccCCCccHHHHHHHHHhhcCCCCC
Q 010456 315 GFEKMISGMYLGDIVRRVILRMSEES-DIFG-PASSRLSMAFILRTPLMAAM----HEDDSPELTEVARILNDVLEIPDV 388 (510)
Q Consensus 315 ~fEKmiSG~YLGEivR~vl~~l~~~~-~lF~-~~p~~l~~~~~l~t~~ls~i----~~d~s~~~~~~~~il~~~~~~~~~ 388 (510)
|+|-.+-|..-|-++|+...++.+.+ .+-+ .+|+.+..-..|+.+.+--- +.|+.-+.+. ++. +|+ .
T Consensus 155 PlEvVvR~y~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~---i~~--~g~--~ 227 (370)
T PLN02544 155 PVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEE---IVE--EGL--M 227 (370)
T ss_pred eEEEEEEeeeeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHH---HHH--hcC--C
Confidence 78888888888998888888877632 3333 45544433333332222111 1333322222 222 444 6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 010456 389 PLKVRKLIVKICDVVTRRAARLAAA 413 (510)
Q Consensus 389 ~~~d~~~v~~I~~~V~~RaA~L~Aa 413 (510)
+.++.+.+++++..|-++++.+++.
T Consensus 228 ~~ee~~~i~~~alki~~~l~~~~~~ 252 (370)
T PLN02544 228 TQEDFDEVSSKALALFAFGQEVAAE 252 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999988887654
No 143
>PRK13410 molecular chaperone DnaK; Provisional
Probab=21.67 E-value=2.4e+02 Score=32.55 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.2
Q ss_pred ceeEEEEEeCCceeEEEEEEEcC
Q 010456 96 KGIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 96 ~G~~LalDlGGTN~RV~~V~l~g 118 (510)
.+.++.+||||.+|-|.++++.+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~ 208 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGN 208 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcC
Confidence 34699999999999999999965
No 144
>PRK03661 hypothetical protein; Validated
Probab=21.63 E-value=1.7e+02 Score=27.41 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=41.4
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeCCceeEEEEEEEcC
Q 010456 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 50 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lPtG----~E~G-~~LalDlGGTN~RV~~V~l~g 118 (510)
+.+|.+.|++ ++.....+|-.|.....++++-.--|-+.. |+| ++.| .|++|...+....+-...+.|
T Consensus 65 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~~~~~~~~~~~~~g 140 (164)
T PRK03661 65 IGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASASGEGITRRECFSG 140 (164)
T ss_pred cCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeCCCcEEEEEEecCC
Confidence 3577777766 777777778777765445666666666643 654 4567 588887643333333444433
No 145
>PLN02669 xylulokinase
Probab=21.25 E-value=3.9e+02 Score=29.96 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=21.5
Q ss_pred cCCCCccceeEEEEEeCCceeEEEEEEEcC
Q 010456 89 NLPTGSEKGIYYALDLGGTNFRVLRVQLGG 118 (510)
Q Consensus 89 ~lPtG~E~G~~LalDlGGTN~RV~~V~l~g 118 (510)
+||.+. .||+||+|.|++|+++++..|
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g 29 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNL 29 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCC
Confidence 466544 689999999999999998665
No 146
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=20.72 E-value=1.9e+02 Score=23.41 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010456 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (510)
Q Consensus 40 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 75 (510)
.++++.+.+...++..+...+.+.|.++|...|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667777778999999999999999999999753
No 147
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.40 E-value=9.2e+02 Score=26.26 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=85.0
Q ss_pred chhhhccccc---------hHHHHHHHHHHhhhcCCCCCCCchhhccCCC--CChhhhhhhccCCCccHHHHHHHHHhhc
Q 010456 315 GFEKMISGMY---------LGDIVRRVILRMSEESDIFGPASSRLSMAFI--LRTPLMAAMHEDDSPELTEVARILNDVL 383 (510)
Q Consensus 315 ~fEKmiSG~Y---------LGEivR~vl~~l~~~~~lF~~~p~~l~~~~~--l~t~~ls~i~~d~s~~~~~~~~il~~~~ 383 (510)
.+.-+++++| +-++.+.+|..++++..-...+-+.|..-.. -..+.+..+..|+.-..+.=.+++...|
T Consensus 252 ~~~~~~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~ 331 (445)
T PRK13428 252 VLRTAVSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVL 331 (445)
T ss_pred HHHHHHhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4455566666 6678888888887754222111122211111 1234555555565555444445566555
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccccceEEEEEEeeEeeecHhHHHH
Q 010456 384 EIP-DVPLKVRKLIVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGISSGRSRSDIRMRRTVVAIEGGLYSSYTLFREY 462 (510)
Q Consensus 384 ~~~-~~~~~d~~~v~~I~~~V~~RaA~L~Aa~iaaIl~~~~~~~~~~~~~~~~~~~~~~~~~~I~vdGsl~~~~p~f~~~ 462 (510)
+-. ..++.-...++.+++- .|. ......+.......... ....++.-=|-+.-.+.=++.
T Consensus 332 ~~~~~~~~~~~nfl~~lv~~--~R~-~~l~~i~~~~~~l~~~~----------------~g~~~a~VtsA~pLs~~q~~~ 392 (445)
T PRK13428 332 GGASTVNPVTVALLSQTVEL--LRG-QPAEEAVLFLAELAVAR----------------RGEVVAQVSAAAELSDAQRTR 392 (445)
T ss_pred hccccCCHHHHHHHHHHHHC--Cch-hhHHHHHHHHHHHHHHH----------------CCeeEEEEEeecCCCHHHHHH
Confidence 420 1344444444433321 122 12222222222222221 235566666778888899999
Q ss_pred HHHHHHhhhCCCCcccEEEEEcCCcchHHHHH
Q 010456 463 LHEALTDILGDDIAQHVILKVTEDGSGIGAAL 494 (510)
Q Consensus 463 l~~~l~~l~~~~~~~~v~l~~s~DgSgiGAAl 494 (510)
+.+.+...+|. .|.+...-|-|.+|..+
T Consensus 393 L~~~L~k~~g~----~V~l~~~VDpsLiGGiv 420 (445)
T PRK13428 393 LTEVLSRIYGR----PVSVQLHIDPELLGGLS 420 (445)
T ss_pred HHHHHHHHHCC----ceEEEeeeCchhhCceE
Confidence 99999988873 68888888999998743
Done!