Query 010457
Match_columns 510
No_of_seqs 124 out of 141
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 00:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05003 DUF668: Protein of un 100.0 1.2E-44 2.7E-49 307.4 8.5 86 242-327 1-89 (89)
2 PF11961 DUF3475: Domain of un 99.9 5.4E-28 1.2E-32 191.0 4.0 57 22-78 1-57 (57)
3 PRK04778 septation ring format 31.8 2.5E+02 0.0054 31.6 9.3 40 123-162 201-245 (569)
4 PF06160 EzrA: Septation ring 31.1 2.4E+02 0.0052 31.8 9.1 93 100-192 169-271 (560)
5 COG4295 Uncharacterized protei 29.7 18 0.00039 37.0 0.1 29 4-43 101-130 (285)
6 PF01418 HTH_6: Helix-turn-hel 28.3 49 0.0011 27.3 2.4 65 29-104 2-66 (77)
7 KOG3498 Preprotein translocase 28.0 44 0.00096 28.2 2.0 31 77-107 6-36 (67)
8 KOG4403 Cell surface glycoprot 27.6 1.1E+02 0.0024 34.2 5.5 80 59-138 167-257 (575)
9 PF09139 Mmp37: Mitochondrial 25.1 1.1E+02 0.0023 32.8 4.8 50 268-317 241-302 (330)
10 PF13094 CENP-Q: CENP-Q, a CEN 24.8 2E+02 0.0044 26.7 6.1 52 139-195 33-84 (160)
11 PF04111 APG6: Autophagy prote 23.5 1.1E+02 0.0023 32.2 4.3 29 175-203 115-143 (314)
12 KOG4552 Vitamin-D-receptor int 23.3 5.1E+02 0.011 26.8 8.8 70 126-206 56-132 (272)
13 PF11598 COMP: Cartilage oligo 23.2 97 0.0021 24.3 3.0 20 175-194 17-36 (45)
14 PF04799 Fzo_mitofusin: fzo-li 23.0 2.7E+02 0.0058 27.4 6.6 23 93-115 96-118 (171)
15 PF10168 Nup88: Nuclear pore c 22.5 6E+02 0.013 30.0 10.4 65 125-190 602-670 (717)
16 KOG2991 Splicing regulator [RN 21.2 3.8E+02 0.0082 28.4 7.6 23 173-195 278-300 (330)
17 PF12777 MT: Microtubule-bindi 20.9 8.7E+02 0.019 25.5 10.4 39 175-213 272-311 (344)
18 TIGR02865 spore_II_E stage II 20.5 1.2E+03 0.027 27.5 12.5 148 9-159 227-403 (764)
19 COG2443 Sss1 Preprotein transl 20.4 61 0.0013 27.2 1.5 31 75-105 4-34 (65)
No 1
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=1.2e-44 Score=307.42 Aligned_cols=86 Identities=63% Similarity=1.001 Sum_probs=85.1
Q ss_pred CcchhhhhhhHHHHHHHHHHHhhcCCCCCCchHHHHhhcCchhHHHHHHhcccccccc---chhhHHHHHHHHHHHhhhh
Q 010457 242 RLGPAGLALHYANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSKLQSFHVK---EEFTVAQIKDEMEKTLQWL 318 (510)
Q Consensus 242 tLG~AgLALHYANiIi~Ie~lvs~p~~v~~~aRD~LY~mLP~sIRsaLRskLr~~~~~---de~la~ewk~~m~kiL~WL 318 (510)
|||+|||||||||||+|||+|+++|++||+|+||+||||||++||++||+|||++++. |+.+++|||++|+|||+||
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~~~~d~~~a~~~~~~m~kiL~WL 80 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKKAIYDELLAAEWKDAMEKILEWL 80 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhhhh
Q 010457 319 VPIATNTAK 327 (510)
Q Consensus 319 aPmAhNtir 327 (510)
+||||||+|
T Consensus 81 ~P~A~nt~r 89 (89)
T PF05003_consen 81 APMAHNTIR 89 (89)
T ss_pred HHHHHhccC
Confidence 999999997
No 2
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.94 E-value=5.4e-28 Score=191.01 Aligned_cols=57 Identities=51% Similarity=0.656 Sum_probs=56.4
Q ss_pred eehHHHHHHHHHHHHhhhcCChHHHHHHhhhccCccccccccccChHHHHHHHHHHH
Q 010457 22 ILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADK 78 (510)
Q Consensus 22 ILAFEVAntmsK~~~L~~SLSd~~i~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk 78 (510)
||||||||||||++||||||||++|.+||+||++|||||+|||+|++|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 3
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.81 E-value=2.5e+02 Score=31.62 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHhhh
Q 010457 123 QEAELLMEQLMTLVQHTAELYNELQ-----ILDRFEQDCQHKRQE 162 (510)
Q Consensus 123 ~~ae~~~~km~~lV~~Ta~LY~ELe-----aL~~lEq~~rrk~~~ 162 (510)
.+++..+..|+.++..--.||+++. .|++++.+||++...
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~ 245 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEE 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 5677788888888888888999887 589999999877543
No 4
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.13 E-value=2.4e+02 Score=31.78 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=56.3
Q ss_pred cccchhHHHHHHhh---c--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHhhhcCCCCCC
Q 010457 100 QWHNLGRYFEKISR---E--LIPQKQLKQEAELLMEQLMTLVQHTAELYNELQ-----ILDRFEQDCQHKRQEEDNPVGS 169 (510)
Q Consensus 100 ~~h~fdr~F~~l~~---~--~~~~~~~~~~ae~~~~km~~lV~~Ta~LY~ELe-----aL~~lEq~~rrk~~~~~~~~~~ 169 (510)
++.+++.-|+.+.. . ....+..-.+++..+..|+..+..--.||++++ .|++++.+|+++..+.-....-
T Consensus 169 ~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~ 248 (560)
T PF06160_consen 169 QLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHL 248 (560)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 44455555555543 1 111222336788888999999999999999997 7999999998775533211100
Q ss_pred CCCccHHHHHHHHHHHHHHHHhh
Q 010457 170 QKGESFAILRAELKSQRKQVKIL 192 (510)
Q Consensus 170 ~~g~~l~~l~~el~~Qrk~Vk~L 192 (510)
.-...+..++.++..=...+++|
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 01123455556665555555544
No 5
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.70 E-value=18 Score=37.00 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=22.8
Q ss_pred CCCCCCc-cccccCCCceeeehHHHHHHHHHHHHhhhcCCh
Q 010457 4 LNPNNGF-SGVGTKSNELSILAFEVANTIVKGSNLMLSISE 43 (510)
Q Consensus 4 l~~~~gf-sg~~~k~~kIgILAFEVAntmsK~~~L~~SLSd 43 (510)
=|||||| +|+-.... -++++++||.||-.
T Consensus 101 KNPGGGF~~GAqAQEE-----------slaR~S~lY~sL~k 130 (285)
T COG4295 101 KNPGGGFQSGAQAQEE-----------SLARASSLYPSLIK 130 (285)
T ss_pred cCCCCccccchhhhhH-----------HHhhhccchHhhhc
Confidence 3899999 88755543 46899999999865
No 6
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=28.28 E-value=49 Score=27.27 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCccccch
Q 010457 29 NTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNL 104 (510)
Q Consensus 29 ntmsK~~~L~~SLSd~~i~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaRlG~rC~DP~~h~f 104 (510)
|.+.|+-..+..||+.|-. |-.-+-++.+.+..+-..|..+.+.+-..+|+||.+++.=..|..|
T Consensus 2 ~l~~~i~~~~~~ls~~e~~-----------Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~ef 66 (77)
T PF01418_consen 2 NLLEKIRSQYNSLSPTEKK-----------IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEF 66 (77)
T ss_dssp -HHHHHHHHGGGS-HHHHH-----------HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHH
T ss_pred cHHHHHHHHHhhCCHHHHH-----------HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHH
Confidence 4566777788889888744 4445567788888899999999999999999999999874444333
No 7
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.95 E-value=44 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHhhccCCCccccchhHH
Q 010457 77 DKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 107 (510)
Q Consensus 77 Ek~eeL~~~A~~VaRlG~rC~DP~~h~fdr~ 107 (510)
.+.+-++.|+++-.||-+||.-|.-..|-..
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki 36 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKI 36 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3567789999999999999999976665543
No 8
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.65 E-value=1.1e+02 Score=34.20 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=48.7
Q ss_pred cccccccChHHH---HHHHHHHHHHHHhHHHHHHHHhhccCCCc-cc-cchhHHHHHHhhcccchh------hhHHHHHH
Q 010457 59 VQNLVSKDMDEL---LKIFAADKRDDLKIFTGEVVRFGNRSKDP-QW-HNLGRYFEKISRELIPQK------QLKQEAEL 127 (510)
Q Consensus 59 V~~LVS~D~~~L---L~LA~aEk~eeL~~~A~~VaRlG~rC~DP-~~-h~fdr~F~~l~~~~~~~~------~~~~~ae~ 127 (510)
.-+|-+.+-+|+ |.|-----++-|..-|=.|+=||---+++ .| .+|=-+|.-+..-...|. ..++.+.+
T Consensus 167 lPRlAv~n~~f~~~~Lgikd~~hrQKlqLkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~k 246 (575)
T KOG4403|consen 167 LPRLAVPNSDFLGKVLGIKDRSHRQKLQLKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNK 246 (575)
T ss_pred ccccccCchHHhhhhhccCchHHHHhhhhhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 345555666665 44444556888888999999999766665 45 677777777664322222 23455555
Q ss_pred HHHHHHHHHHH
Q 010457 128 LMEQLMTLVQH 138 (510)
Q Consensus 128 ~~~km~~lV~~ 138 (510)
.|++|+-|-.+
T Consensus 247 m~kdle~Lq~a 257 (575)
T KOG4403|consen 247 MMKDLEGLQRA 257 (575)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 9
>PF09139 Mmp37: Mitochondrial matrix Mmp37; InterPro: IPR015222 MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane [].
Probab=25.14 E-value=1.1e+02 Score=32.77 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=38.4
Q ss_pred CCCCchHHHHhhcCchhHHHHHHhcccccc------------ccchhhHHHHHHHHHHHhhh
Q 010457 268 SMPPSTRDALYQSLPPSIKSALRSKLQSFH------------VKEEFTVAQIKDEMEKTLQW 317 (510)
Q Consensus 268 ~v~~~aRD~LY~mLP~sIRsaLRskLr~~~------------~~de~la~ewk~~m~kiL~W 317 (510)
...+++|-.|-..||.+++..|..+..... ..|+.....++.++.+|-.|
T Consensus 241 d~s~~~~~~~l~~LP~~~~~~l~~~~~~~~~~~d~~~~~~~ia~d~~~~~~v~~aI~~IV~~ 302 (330)
T PF09139_consen 241 DKSPSARAHLLRRLPKTLRSRLYRQYDRKGRNRDGEEFLRAIASDPDLREVVRRAIRRIVRR 302 (330)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHhccCCCccchhHHHHHHhcChhHHHHHHHHHHhHhhh
Confidence 356889999999999999999998876433 22556677778888777766
No 10
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.81 E-value=2e+02 Score=26.74 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhh
Q 010457 139 TAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKK 195 (510)
Q Consensus 139 Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~l~~el~~Qrk~Vk~LKk~ 195 (510)
-..|..+++.|+.|+..+++....-+. ..+.+..|++.++.+..+++...++
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~-----d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALER-----DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667888999999888765433332 3456888888888888877766554
No 11
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.53 E-value=1.1e+02 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccHH
Q 010457 175 FAILRAELKSQRKQVKILRKKSLWSRSLE 203 (510)
Q Consensus 175 l~~l~~el~~Qrk~Vk~LKk~SLWsrt~d 203 (510)
...+...+..-+.++..|++...||.+|.
T Consensus 115 ~~sl~~q~~~~~~~L~~L~ktNv~n~~F~ 143 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKTNVYNDTFH 143 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT--TTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhceee
Confidence 46677777888889999999999998873
No 12
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.34 E-value=5.1e+02 Score=26.76 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HH------HHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhhccc
Q 010457 126 ELLMEQLMTLVQHTAELYNELQILDR-FE------QDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLW 198 (510)
Q Consensus 126 e~~~~km~~lV~~Ta~LY~ELeaL~~-lE------q~~rrk~~~~~~~~~~~~g~~l~~l~~el~~Qrk~Vk~LKk~SLW 198 (510)
+..+++|+++|-.-++..|+|+.|.. .| |.+++-++.. -.+|-..++.-+|..|++++.-+=
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~a-----------E~iLtta~fqA~qKLksi~~A~kr 124 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSA-----------EVILTTACFQANQKLKSIKEAEKR 124 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678888888888888888877631 22 2232222222 246777777788888888887666
Q ss_pred cccHHHHH
Q 010457 199 SRSLEEVM 206 (510)
Q Consensus 199 srt~d~vv 206 (510)
--+-|+++
T Consensus 125 pvsSEelI 132 (272)
T KOG4552|consen 125 PVSSEELI 132 (272)
T ss_pred CCCHHHHH
Confidence 66666554
No 13
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=23.22 E-value=97 Score=24.26 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 010457 175 FAILRAELKSQRKQVKILRK 194 (510)
Q Consensus 175 l~~l~~el~~Qrk~Vk~LKk 194 (510)
+.+++..++.|+||+..||.
T Consensus 17 l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999985
No 14
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.99 E-value=2.7e+02 Score=27.44 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=7.2
Q ss_pred hccCCCccccchhHHHHHHhhcc
Q 010457 93 GNRSKDPQWHNLGRYFEKISREL 115 (510)
Q Consensus 93 G~rC~DP~~h~fdr~F~~l~~~~ 115 (510)
+..|.+--.+.++..|++|....
T Consensus 96 sancs~QVqqeL~~tf~rL~~~V 118 (171)
T PF04799_consen 96 SANCSHQVQQELSSTFARLCQQV 118 (171)
T ss_dssp --------------HHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998754
No 15
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.47 E-value=6e+02 Score=29.95 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 010457 125 AELLMEQLMTLVQHTAELYNELQ----ILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVK 190 (510)
Q Consensus 125 ae~~~~km~~lV~~Ta~LY~ELe----aL~~lEq~~rrk~~~~~~~~~~~~g~~l~~l~~el~~Qrk~Vk 190 (510)
.|...++-+.|++....+.+-++ .|.+-|+++++.++..... ...-..++..++.++..|+.++.
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~-l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ-LQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444333 2555666665444432210 00011234555555555555554
No 16
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.22 E-value=3.8e+02 Score=28.42 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhh
Q 010457 173 ESFAILRAELKSQRKQVKILRKK 195 (510)
Q Consensus 173 ~~l~~l~~el~~Qrk~Vk~LKk~ 195 (510)
..+.+||++++.-|+++.+|++.
T Consensus 278 sTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 278 STILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999874
No 17
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.87 E-value=8.7e+02 Score=25.53 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhccccccHHHHHHHHHHHH
Q 010457 175 FAILRAELKSQRKQVKILR-KKSLWSRSLEEVMEKLVDIV 213 (510)
Q Consensus 175 l~~l~~el~~Qrk~Vk~LK-k~SLWsrt~d~vvekLv~iV 213 (510)
+...+.++..-.+.+..|. ++.=|..+++..-+.+..++
T Consensus 272 ~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 272 IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccH
Confidence 3455556666666666664 45569999999877766654
No 18
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.46 E-value=1.2e+03 Score=27.45 Aligned_cols=148 Identities=14% Similarity=0.247 Sum_probs=73.2
Q ss_pred Cc-cccccCCCcee-eehHHHHHHHHHHHH-----hhhcCChHHHHHHhhhccCc---cccccccc-------cChHHH-
Q 010457 9 GF-SGVGTKSNELS-ILAFEVANTIVKGSN-----LMLSISESSVRQLKEVVLPA---EGVQNLVS-------KDMDEL- 70 (510)
Q Consensus 9 gf-sg~~~k~~kIg-ILAFEVAntmsK~~~-----L~~SLSd~~i~~Lr~evl~S---eGV~~LVS-------~D~~~L- 70 (510)
|+ +|.-++++|+| +++|=+++++..+.. +...|-|--|.-+==-+++. +.+.+.++ ..+.+.
T Consensus 227 GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~~~~e~~ia~~lFll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (764)
T TIGR02865 227 GLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSLALYEALIATLLFLLIPNKIYKKLERYLDGERKQPDLQEDYMR 306 (764)
T ss_pred HHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCchhhhhhhHHHHH
Confidence 66 78878888865 689999998875542 11111111111111001121 12222222 122222
Q ss_pred -HHHHHHHHHHHHhHHHHHHHH-hhccCCCc----cccchhHHHHHHhhcc-----cchhhhHHHHHHHHHHHHHHHHHH
Q 010457 71 -LKIFAADKRDDLKIFTGEVVR-FGNRSKDP----QWHNLGRYFEKISREL-----IPQKQLKQEAELLMEQLMTLVQHT 139 (510)
Q Consensus 71 -L~LA~aEk~eeL~~~A~~VaR-lG~rC~DP----~~h~fdr~F~~l~~~~-----~~~~~~~~~ae~~~~km~~lV~~T 139 (510)
++=..++|++++..+=.++++ |++.|.++ .=...|.+|+.+.... .-...|.++.+...+.|..+.+..
T Consensus 307 ~~~~~~~~rl~~~a~~~~~Ls~tf~~~~~~~~~~~~~~~~~~~~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~ 386 (764)
T TIGR02865 307 KVREIAAEKLEEFSEVFRELSNTFVEALASNEKLTMKRKSSYLLENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENL 386 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHH
Confidence 333445666655554444444 43344332 1246788888877532 223456677777777777666654
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 010457 140 AELYNELQILDRFEQDCQHK 159 (510)
Q Consensus 140 a~LY~ELeaL~~lEq~~rrk 159 (510)
.+ +.+.+ .++.+.++++
T Consensus 387 e~-~~~~~--~~~p~~~~~~ 403 (764)
T TIGR02865 387 EE-KKDPN--SKLPDEFERK 403 (764)
T ss_pred Hh-cCCch--hhhhHHHHHh
Confidence 44 33333 5555555444
No 19
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=20.35 E-value=61 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHHHHHhhccCCCccccchh
Q 010457 75 AADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 105 (510)
Q Consensus 75 ~aEk~eeL~~~A~~VaRlG~rC~DP~~h~fd 105 (510)
.-++.|++..|-++-.|+=++|+-|.|..|-
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~ 34 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYS 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3578899999999999999999999986553
Done!