Query 010457
Match_columns 510
No_of_seqs 124 out of 141
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 77.4 5.8 0.0002 43.0 8.2 87 175-280 119-205 (562)
2 3hls_A Guanylate cyclase solub 60.7 3.4 0.00012 32.9 1.6 16 275-290 49-64 (66)
3 3twe_A Alpha4H; unknown functi 60.1 11 0.00037 25.2 3.7 23 138-160 2-24 (27)
4 1deq_A Fibrinogen (alpha chain 31.6 73 0.0025 33.4 6.4 42 252-294 181-222 (390)
5 1z23_A CRK-associated substrat 26.9 3.1E+02 0.011 25.5 9.1 129 24-226 20-160 (163)
6 3f4m_A Tumor necrosis factor, 24.4 3.1E+02 0.011 25.4 8.6 120 120-264 28-157 (161)
7 3mp7_B Preprotein translocase 19.2 31 0.001 27.2 0.6 32 76-107 2-33 (61)
8 1uk5_A BAG-family molecular ch 18.2 2.7E+02 0.0091 24.4 6.4 37 74-110 31-67 (111)
9 1m1j_A Fibrinogen alpha subuni 17.6 1.4E+02 0.0046 32.2 5.2 26 252-278 179-204 (491)
10 3pdy_A Plectin; cytoskeleton, 17.5 4.5E+02 0.015 23.7 8.3 38 119-156 91-128 (210)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.41 E-value=5.8 Score=43.02 Aligned_cols=87 Identities=13% Similarity=0.285 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHH
Q 010457 175 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN 254 (510)
Q Consensus 175 l~~l~~el~~Qrk~Vk~LKk~SLWsrt~d~vvekLv~iV~~i~~rI~~vFG~~~~~~~~~~~~~~~~tLG~AgLALHYAN 254 (510)
+..|+.+|..|-+.++.|+. ++++.+.++-+-=--|-..|..-.|++.-... -.--|. -|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~------~~vd~~------sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA------REVDLK------DYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCC------CCCCHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhe------eecchH------HHHH
Confidence 45666666666666666654 45666555555444455667766676643211 111111 3999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHhhc
Q 010457 255 IILQIDSLVARSSSMPPSTRDALYQS 280 (510)
Q Consensus 255 iIi~Ie~lvs~p~~v~~~aRD~LY~m 280 (510)
+=-|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999977 4566787788888876
No 2
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=60.69 E-value=3.4 Score=32.94 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=11.7
Q ss_pred HHHhhcCchhHHHHHH
Q 010457 275 DALYQSLPPSIKSALR 290 (510)
Q Consensus 275 D~LY~mLP~sIRsaLR 290 (510)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 5577888887777766
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.06 E-value=11 Score=25.21 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Q 010457 138 HTAELYNELQILDRFEQDCQHKR 160 (510)
Q Consensus 138 ~Ta~LY~ELeaL~~lEq~~rrk~ 160 (510)
+.-+||.|||.|.+-=..+|+|+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999998877666666554
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.60 E-value=73 Score=33.38 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHHhhcCchhHHHHHHhccc
Q 010457 252 YANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSKLQ 294 (510)
Q Consensus 252 YANiIi~Ie~lvs~p~~v~~~aRD~LY~mLP~sIRsaLRskLr 294 (510)
|-|+--|+|.+.+ -.+.|.-.|-.|+.+=|..++..+..+-|
T Consensus 181 ye~qqKQL~qv~a-~~llP~~~~q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIA-INLLPSRDIQYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhh-hccccccccccccccccccccccCChhhc
Confidence 5577777777543 33445444545655555555554433333
No 5
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=26.90 E-value=3.1e+02 Score=25.46 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHh---------hhcC---ChHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHH
Q 010457 24 AFEVANTIVKGSNL---------MLSI---SESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVR 91 (510)
Q Consensus 24 AFEVAntmsK~~~L---------~~SL---Sd~~i~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaR 91 (510)
==||+..++++..+ |++. -+.+|..+|.-+.+ .-+-+.+|-.||+-+.
T Consensus 20 Q~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~-------------------v~~Sl~efL~Farga~- 79 (163)
T 1z23_A 20 QQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAA-------------------VHGAVHELLEFARSAV- 79 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH-
Confidence 34677778888777 7777 34555555554332 1122344555555543
Q ss_pred hhccCCCccccchhHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCC
Q 010457 92 FGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQK 171 (510)
Q Consensus 92 lG~rC~DP~~h~fdr~F~~l~~~~~~~~~~~~~ae~~~~km~~lV~~Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~ 171 (510)
||-|.- ..+.+..++.+.+++|+ .....|.+-.++|+.-+ +.+
T Consensus 80 -~nA~~~------------------~d~~L~~kl~r~Lq~l~---ds~qiL~~~~~~Ld~~~-------------~~~-- 122 (163)
T 1z23_A 80 -SSATHT------------------SDRTLHAKLSRQLQKME---DVYQTLVVHGQVLDSGR-------------GGP-- 122 (163)
T ss_dssp -TTCCCT------------------TCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCS-------------SSC--
T ss_pred -hhcccc------------------ccchHHHHHHHHHHHHh---hHHHHHHHHHHHHHccC-------------CCC--
Confidence 565541 12234444544444444 45555555555555333 111
Q ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 010457 172 GESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGS 226 (510)
Q Consensus 172 g~~l~~l~~el~~Qrk~Vk~LKk~SLWsrt~d~vvekLv~iV~~i~~rI~~vFG~ 226 (510)
..+...|-+=|+.-|.. - +-..+.+-||+.-+..-|-.
T Consensus 123 ~~~~DdLDrfVmvaR~v--------------p---dD~kqlas~I~~na~lLFkr 160 (163)
T 1z23_A 123 GFTLDDLDRLVACSRAV--------------P---EDAKQLASFLHGNASLLFRR 160 (163)
T ss_dssp CCCHHHHHHHHHHHHHH--------------H---HHHHHHHHHHHHHHHHHSCC
T ss_pred CCCcchHHHHHHhhccC--------------C---HHHHHHHHHHHhhhhheecc
Confidence 22367787777775532 2 22333456667777777743
No 6
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=24.37 E-value=3.1e+02 Score=25.35 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhhcC-C--CCCCCCCccHHHHHHHHHHHHHHH
Q 010457 120 QLKQEAELLMEQLMTLVQHTAELYN-------ELQILDRFEQDCQHKRQEED-N--PVGSQKGESFAILRAELKSQRKQV 189 (510)
Q Consensus 120 ~~~~~ae~~~~km~~lV~~Ta~LY~-------ELeaL~~lEq~~rrk~~~~~-~--~~~~~~g~~l~~l~~el~~Qrk~V 189 (510)
+.+++|++.++.+.+.|-...-||+ ||..+++|-+.++.- .-.- + -+.+. =....|..-+..-|...
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~-amt~iSF~eVdfT--fD~~~L~~~L~ec~~lL 104 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQG-AMTALSFGEVDFT--FEAAVLAGLLTECRDVL 104 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-HHHHHHHTSTTSC--CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHH-HHHHhhhhccCcc--ccHHHHHHHHHHHHHHH
Confidence 4578999999999999999999996 666666555444321 1000 0 00111 11334555555555555
Q ss_pred HhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHhh
Q 010457 190 KILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVA 264 (510)
Q Consensus 190 k~LKk~SLWsrt~d~vvekLv~iV~~i~~rI~~vFG~~~~~~~~~~~~~~~~tLG~AgLALHYANiIi~Ie~lvs 264 (510)
..|=+.-|=-++ +.||.+||+-.....-...-..+ -..-|--+|+--+++|+-
T Consensus 105 ~~lv~~HLT~KS---------------~~Ri~~vF~~f~~~efL~~lf~~-------~~~~~L~kI~~~Lnklld 157 (161)
T 3f4m_A 105 LELVEHHLTPKS---------------HGRIRHVFDHFSDPGLLTALYGP-------DFTQHLGKICDGLRKLLD 157 (161)
T ss_dssp HHHHTTTSCHHH---------------HHHHHHHHHHHTCHHHHHHHTSG-------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCcch---------------HHHHHHHHHHhCCHHHHHHHhCc-------HHHHHHHHHHHHHHHHHh
Confidence 444333333222 57888888643321000000111 344566677777777653
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=19.21 E-value=31 Score=27.25 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCccccchhHH
Q 010457 76 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 107 (510)
Q Consensus 76 aEk~eeL~~~A~~VaRlG~rC~DP~~h~fdr~ 107 (510)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678889999999999999999999887654
No 8
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=18.18 E-value=2.7e+02 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCCccccchhHHHHH
Q 010457 74 FAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEK 110 (510)
Q Consensus 74 A~aEk~eeL~~~A~~VaRlG~rC~DP~~h~fdr~F~~ 110 (510)
+..+...+++.++..|..|+..+.|-.+..|+.+..+
T Consensus 31 ~I~~I~~eV~~L~~qV~~f~g~k~dkey~~L~E~L~k 67 (111)
T 1uk5_A 31 KVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTK 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4567788888899999999888899887777776554
No 9
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=17.58 E-value=1.4e+02 Score=32.20 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHHh
Q 010457 252 YANIILQIDSLVARSSSMPPSTRDALY 278 (510)
Q Consensus 252 YANiIi~Ie~lvs~p~~v~~~aRD~LY 278 (510)
|-|+=-|+|.+.+ ..+.|.-.|..|+
T Consensus 179 Ye~~QKqLeQv~a-~dL~p~~d~q~Lp 204 (491)
T 1m1j_A 179 YDNIQKHLTQASS-IDMHPDFQTTTLS 204 (491)
T ss_dssp THHHHHHHHHHTT-CCCCCSCCCCCCS
T ss_pred HHHHHHHHHHhhc-cccCCccchhhhh
Confidence 8888889999763 4445544443444
No 10
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=17.55 E-value=4.5e+02 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010457 119 KQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC 156 (510)
Q Consensus 119 ~~~~~~ae~~~~km~~lV~~Ta~LY~ELeaL~~lEq~~ 156 (510)
..+.+-++.+.++|+.|-+.-.+...++.=|++-|+..
T Consensus 91 ~~L~~~a~~R~~~L~~L~~f~~~~~~~~~Wl~eke~~~ 128 (210)
T 3pdy_A 91 AKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888866555555555555555555554
Done!