Query 010457
Match_columns 510
No_of_seqs 124 out of 141
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010457.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010457hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 28.1 47 0.0034 23.8 5.2 50 47-97 6-55 (66)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 23.5 20 0.0014 27.9 2.4 20 279-298 55-74 (89)
3 d2pjqa1 a.211.1.1 (A:1-215) Un 18.4 58 0.0042 28.3 4.8 67 71-137 117-206 (215)
4 d1htaa_ a.22.1.2 (A:) Archaeal 16.7 1.2E+02 0.0089 21.3 5.5 52 41-97 4-55 (68)
5 d1r6ta1 a.16.1.3 (A:7-60) N-te 16.7 81 0.0059 22.7 4.3 49 174-226 2-50 (54)
6 d1ku5a_ a.22.1.2 (A:) Archaeal 16.0 65 0.0047 22.9 3.7 43 54-97 12-54 (66)
7 d1ugoa_ a.7.7.1 (A:) BAG-famil 15.5 1.5E+02 0.011 23.2 6.2 37 74-110 19-55 (99)
8 d2oufa1 a.292.1.1 (A:13-92) Hy 15.4 68 0.005 24.8 3.9 52 306-379 17-72 (80)
9 d2bdea1 c.108.1.23 (A:2-459) C 13.3 98 0.0071 30.4 5.3 36 123-158 324-359 (458)
10 d2o3fa1 a.4.1.20 (A:1-83) Puta 11.8 63 0.0046 24.3 2.7 64 30-104 5-68 (83)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.07 E-value=47 Score=23.82 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHHhhccCC
Q 010457 47 RQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 97 (510)
Q Consensus 47 ~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaRlG~rC~ 97 (510)
.|.|. |+++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|+.
T Consensus 6 srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 6 ARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44444 344333335899999999999999999999999999999877654
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.52 E-value=20 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=17.3
Q ss_pred hcCchhHHHHHHhccccccc
Q 010457 279 QSLPPSIKSALRSKLQSFHV 298 (510)
Q Consensus 279 ~mLP~sIRsaLRskLr~~~~ 298 (510)
+.+|++.|+.+.+|||.|-.
T Consensus 55 r~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 55 REIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp TTSCTTTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 35999999999999998754
No 3
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=18.42 E-value=58 Score=28.27 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhH--HHHHHHHh---hccCCCcccc----------------chhHHHHHHhh--cccchhhhHHHHHH
Q 010457 71 LKIFAADKRDDLKI--FTGEVVRF---GNRSKDPQWH----------------NLGRYFEKISR--ELIPQKQLKQEAEL 127 (510)
Q Consensus 71 L~LA~aEk~eeL~~--~A~~VaRl---G~rC~DP~~h----------------~fdr~F~~l~~--~~~~~~~~~~~ae~ 127 (510)
--+--||+++.|-. +|+..+-- |+.=.||... .++++|++|.. +..--..-++.|+.
T Consensus 117 ~Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~ 196 (215)
T d2pjqa1 117 QVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAH 196 (215)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567899998876 45655533 3334566432 58899998865 22222233567888
Q ss_pred HHHHHHHHHH
Q 010457 128 LMEQLMTLVQ 137 (510)
Q Consensus 128 ~~~km~~lV~ 137 (510)
+.+-|+.|++
T Consensus 197 R~~~m~~Fl~ 206 (215)
T d2pjqa1 197 RTAVMHEFVD 206 (215)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 4
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=16.70 E-value=1.2e+02 Score=21.34 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=43.2
Q ss_pred CChHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHHhhccCC
Q 010457 41 ISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 97 (510)
Q Consensus 41 LSd~~i~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaRlG~rC~ 97 (510)
|.-..|.++= ++-|+.+ ||+|--+++.=++-+...+|-.-|..+++-++|+.
T Consensus 4 LP~a~I~ri~----k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRII----KNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHHH----HHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHH----HHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5556666653 4457776 89999999999999999999999999999888875
No 5
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.70 E-value=81 Score=22.66 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 010457 174 SFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGS 226 (510)
Q Consensus 174 ~l~~l~~el~~Qrk~Vk~LKk~SLWsrt~d~vvekLv~iV~~i~~rI~~vFG~ 226 (510)
++.+|.++|..|=-.||.||..--=....|..|.+| .-+=+..+.+.|.
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~L----L~LK~~yk~~tG~ 50 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKML----VSLKMSYKAAAGE 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH----HHHHHHHHHhhCC
Confidence 467899999999999999997543333444555554 3344556666653
No 6
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=16.00 E-value=65 Score=22.89 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=36.4
Q ss_pred cCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHHhhccCC
Q 010457 54 LPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 97 (510)
Q Consensus 54 l~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaRlG~rC~ 97 (510)
++..|+. -||.|--+++.-||-+..+.|-.-|..++.-++|..
T Consensus 12 ~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 12 IRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445665 489999999999999999999999999998877764
No 7
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.54 E-value=1.5e+02 Score=23.16 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCCccccchhHHHHH
Q 010457 74 FAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEK 110 (510)
Q Consensus 74 A~aEk~eeL~~~A~~VaRlG~rC~DP~~h~fdr~F~~ 110 (510)
+..+..++++.+...|..|...|.|.....|.....+
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~ 55 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTK 55 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3457788888999999999999999766666655443
No 8
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=15.43 E-value=68 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccCCc--cchhhhccCCCCCCCCCCCCCeeeeehhcc--cchhhHHHHHHHHHHH
Q 010457 306 QIKDEMEKTLQWLVPIATNTAKAHHGFG--WVGEWANLGSDLNRKPAGPTDVIRLETLYH--ADKEKTEAYILDLLLW 379 (510)
Q Consensus 306 ewk~~m~kiL~WLaPmAhNtirah~gfg--W~~Ewa~~~s~~~~~~~~~t~vlllQTLyf--ADkeKTEaaI~ELLVg 379 (510)
=.+.+++++|+|||-|= .++. ++|+| |..| +|-++| ..+++.+..--.|-++
T Consensus 17 lv~~ELek~lerlaamE-~l~E-~~~~~e~~e~~--------------------~~~~~~~~e~~d~v~~~~~dl~Ie 72 (80)
T d2oufa1 17 LSKKELERLLELLALLE-TFIE-KEDLEEKFESF--------------------AKALRIDEELQQKIESRKTDIVIQ 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH-HTTCHHHHHHH--------------------HHGGGTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-HhCCcHHHHHH--------------------HHHHHHhHHhHHHHHhhccchHHH
Confidence 35679999999999774 3333 45776 5554 455666 4566666655555443
No 9
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=13.30 E-value=98 Score=30.41 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010457 123 QEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQH 158 (510)
Q Consensus 123 ~~ae~~~~km~~lV~~Ta~LY~ELeaL~~lEq~~rr 158 (510)
+|.+.+++...+-......|-.-+..+.+++|.+..
T Consensus 324 ~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 359 (458)
T d2bdea1 324 EELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVD 359 (458)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445555444433333333332223334456665543
No 10
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=11.78 E-value=63 Score=24.25 Aligned_cols=64 Identities=6% Similarity=0.054 Sum_probs=49.9
Q ss_pred HHHHHHHhhhcCChHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCccccch
Q 010457 30 TIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNL 104 (510)
Q Consensus 30 tmsK~~~L~~SLSd~~i~~Lr~evl~SeGV~~LVS~D~~~LL~LA~aEk~eeL~~~A~~VaRlG~rC~DP~~h~f 104 (510)
.|..+-..+.+||..+-. |.+-|-++.+.+..+-..|..++..+--.+|.||.+++.=..|..|
T Consensus 5 ~l~~i~~~~~~Ls~~e~~-----------ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~ 68 (83)
T d2o3fa1 5 GLAIIQSMKHKLPPSERK-----------LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDL 68 (83)
T ss_dssp HHHHHHHHGGGSCHHHHH-----------HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHhhCCHHHHH-----------HHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCCCCHHHH
Confidence 456677777888876653 4456778889999999999999999999999999999974433333
Done!