BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010458
         (510 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera]
          Length = 529

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/526 (69%), Positives = 430/526 (81%), Gaps = 17/526 (3%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGR 43
           MF + +   LAA R FS + A +  L             +   K   G     GRDTLGR
Sbjct: 1   MFRQRVHTALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGR 60

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           RLLSLVYAKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM  Q+DI
Sbjct: 61  RLLSLVYAKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDI 120

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
           KL++GDYAVHLDLI+KIRGL+SAE FFE+L DKM+G  TC+ALLH+YVQNK S +AEALM
Sbjct: 121 KLLAGDYAVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALM 180

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
           EKMSECGFLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL  CASQN
Sbjct: 181 EKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQN 240

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D ETAEK  LE+KK KIDPDW++YS+LT+LYIK  L +KAATTL EMEKRT RK R+AYS
Sbjct: 241 DVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYS 300

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           SL+SL+TNM  KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+
Sbjct: 301 SLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSV 360

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           S TGD RVPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKV
Sbjct: 361 SPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKV 420

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
           L+ F+KA+GSV+KW PD +L+   Y  LEEQG+I+GAE +LV LR AGHVSTEIYN LLR
Sbjct: 421 LDYFEKAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLR 480

Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
            YAKAGKMPLI+ E M+KD V+MD ET +++K TS+M VSEVSS F
Sbjct: 481 AYAKAGKMPLIVAEWMKKDKVEMDEETHRLIKETSKMCVSEVSSKF 526


>gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/519 (70%), Positives = 427/519 (82%), Gaps = 17/519 (3%)

Query: 8   ATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGRRLLSLVY 50
           + LAA R FS + A +  L             +   K   G     GRDTLGRRLLSLVY
Sbjct: 121 SALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGRRLLSLVY 180

Query: 51  AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
           AKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM  Q+DIKL++GDY
Sbjct: 181 AKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDY 240

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
           AVHLDLI+KIRGL+SAE FFE+L DKM+G  TC+ALLH+YVQNK S +AEALMEKMSECG
Sbjct: 241 AVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECG 300

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
           FLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL  CASQND ETAEK
Sbjct: 301 FLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEK 360

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             LE+KK KIDPDW++YS+LT+LYIK  L +KAATTL EMEKRT RK R+AYSSL+SL+T
Sbjct: 361 VLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHT 420

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           NM  KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+S TGD R
Sbjct: 421 NMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSR 480

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           VPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKVL+ F+KA
Sbjct: 481 VPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKA 540

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           +GSV+KW PD +L+   Y  LEEQG+I+GAE +LV LR AGHVSTEIYN LLR YAKAGK
Sbjct: 541 VGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGK 600

Query: 471 MPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           MPLI+ E M+KD V+MD ET +++K TS+M VSEVSS F
Sbjct: 601 MPLIVAEWMKKDKVEMDEETHRLIKETSKMCVSEVSSKF 639


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/517 (69%), Positives = 423/517 (81%), Gaps = 17/517 (3%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGR 43
           MF + +   LAA R FS + A +  L             +   K   G     GRDTLGR
Sbjct: 1   MFRQRVHTALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGR 60

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           RLLSLVYAKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM  Q+DI
Sbjct: 61  RLLSLVYAKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDI 120

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
           KL++GDYAVHLDLI+KIRGL+SAE FFE+L DKM+G  TC+ALLH+YVQNK S +AEALM
Sbjct: 121 KLLAGDYAVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALM 180

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
           EKMSECGFLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL  CASQN
Sbjct: 181 EKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQN 240

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D ETAEK  LE+KK KIDPDW++YS+LT+LYIK  L +KAATTL EMEKRT RK R+AYS
Sbjct: 241 DVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYS 300

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           SL+SL+TNM  KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+
Sbjct: 301 SLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSV 360

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           S TGD RVPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKV
Sbjct: 361 SPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKV 420

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
           L+ F+KA+GSV+KW PD +L+   Y  LEEQG+I+GAE +LV LR AGHVSTEIYN LLR
Sbjct: 421 LDYFEKAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLR 480

Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
            YAKAGKMPLI+ E M+KD V+MD ET +++K TS+M
Sbjct: 481 AYAKAGKMPLIVAEWMKKDKVEMDEETHRLIKETSKM 517



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 25/257 (9%)

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           KT +D   +  S+L S+Y K   PE+A  +  E+      K+ ++++S++S Y+ MG+  
Sbjct: 595 KTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEV----LNKDIISWTSMISAYSRMGWAT 650

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E + ++ +M+      +    +C++SS        +A+  +        T D  V N LL
Sbjct: 651 ECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALL 710

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSV 414
           + Y     L++AE F+ R+  +     +  W L+  GY K G + K +  F+  + +G +
Sbjct: 711 SMYCKFGFLKLAEKFFGRVNEQN----FEAWNLMVSGYGKIGLIMKCIGLFREMQCLG-I 765

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT-----LRNAGHVSTEIYNSLLRTYAKAG 469
                    + ++ ++L       GA HL  +     ++N    +  + NSL+  Y K+G
Sbjct: 766 ESDSNSLVSVVSSCSQL-------GATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSG 818

Query: 470 KMPLI--IVERMQKDNV 484
            + +   I  R+ +D V
Sbjct: 819 NLTIARRIFCRIPRDIV 835


>gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa]
 gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/470 (74%), Positives = 397/470 (84%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTLGRRL SLVY KRSA IT+RKWKEEGH V KYELNRIVRELRKLKRYKHALEVCEWM 
Sbjct: 40  DTLGRRLFSLVYGKRSAVITIRKWKEEGHNVRKYELNRIVRELRKLKRYKHALEVCEWMT 99

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            Q DIKLV GDYAVHLDLI+KIRGL+SAE FFE++PDKMR    CSALLH YVQNK  ++
Sbjct: 100 KQSDIKLVPGDYAVHLDLIAKIRGLNSAEKFFEDIPDKMRDYQACSALLHVYVQNKSISK 159

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
           AEALMEKMSECGFLK  LPYNHML++Y++NGQL+KV +++QELKK TSPDVVTYN+WL A
Sbjct: 160 AEALMEKMSECGFLKNALPYNHMLSVYVANGQLEKVAEIIQELKKKTSPDVVTYNMWLTA 219

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
           CASQND ETAEK F+ELKK+K+DPDW++YSTLT+LYIK E  EKAA TLKE+EKR  +KN
Sbjct: 220 CASQNDVETAEKVFMELKKSKLDPDWVTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKN 279

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           RV YSSLLSL+ NM  KD + R W KM S+F KMNDAEY C+ISSLVKLGEF  AEN+Y+
Sbjct: 280 RVTYSSLLSLHANMKDKDGLHRTWNKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYN 339

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           EWES+S T D RV NI+LA+YINRNQ+E AE+F  R+V KGI PCYTTWELLT G+LK  
Sbjct: 340 EWESVSATRDSRVSNIVLASYINRNQMEDAENFCQRMVQKGITPCYTTWELLTCGHLKTE 399

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
           QMEKVLE FKKA+ SVRKW PD RLI   +  LEE+GDI+GAE LLV LR+AGHVST IY
Sbjct: 400 QMEKVLENFKKALCSVRKWTPDKRLIGDIFKNLEERGDIEGAEKLLVILRDAGHVSTMIY 459

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSI 508
           NSLLRTYAKAGKMP+II ERMQKDNV++D ET K+++ TS M VSEVSS+
Sbjct: 460 NSLLRTYAKAGKMPVIIEERMQKDNVELDDETHKLIQTTSTMCVSEVSSL 509


>gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/511 (66%), Positives = 405/511 (79%), Gaps = 6/511 (1%)

Query: 2   FLRSLGATLAAARVFSTKA-AKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMR 60
            LRS+G  LA  R FS  A A++     +     +GG DTLGRRLLSLVY KRSA + + 
Sbjct: 10  LLRSVGTYLAVVRHFSASAEARVG----SAAASSSGGGDTLGRRLLSLVYPKRSAVVAIN 65

Query: 61  KWKEEGH-TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
           KWKEEGH    KY+LNRIVRELRK KRYKHALEVCEWM LQ D+KLV GDYAVHLDLI+K
Sbjct: 66  KWKEEGHEPPRKYQLNRIVRELRKDKRYKHALEVCEWMTLQKDMKLVQGDYAVHLDLITK 125

Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           +RGL+SAE FFE+LPD+MRG  TCSALLH+YVQN    +AEALM KMSEC  L  PLPYN
Sbjct: 126 VRGLNSAEKFFEDLPDRMRGKQTCSALLHAYVQNNLVDKAEALMLKMSECDLLINPLPYN 185

Query: 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           HM++LYISNG+L+KVP+++QELK NTSPD+VT+NLWLAACASQND ETAE+  LELKK K
Sbjct: 186 HMISLYISNGKLEKVPKIIQELKMNTSPDIVTFNLWLAACASQNDVETAERVLLELKKAK 245

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           IDPDW++YSTLT+LYIK    EKA  T+KEME RT RK RVAYSSLLSL+TNMG KD+V 
Sbjct: 246 IDPDWVTYSTLTNLYIKNASLEKAGATVKEMENRTSRKTRVAYSSLLSLHTNMGNKDDVN 305

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           RIW+KM + F KMND EY C+ISSL+KLG+F  AE++Y EWES+SGT D RV NILL +Y
Sbjct: 306 RIWEKMKASFRKMNDNEYICMISSLLKLGDFAGAEDLYREWESVSGTNDVRVSNILLGSY 365

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           IN++Q+EMAE F N++V KG+ PCYTTWEL TWGYLK+  +EK L+ F KAI SV KW P
Sbjct: 366 INQDQMEMAEDFCNQIVQKGVIPCYTTWELFTWGYLKRKDVEKFLDYFSKAISSVTKWSP 425

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
           D RL+  A+  +EEQ    GAE LLV LRNAGHV+T IYN  L+TYA AGKMP+I+ ERM
Sbjct: 426 DQRLVQEAFKIIEEQAHTKGAEQLLVILRNAGHVNTNIYNLFLKTYATAGKMPMIVAERM 485

Query: 480 QKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           +KDNV++D ET+++L +TS+M VS+VS I S
Sbjct: 486 RKDNVKLDEETRRLLDLTSKMCVSDVSRILS 516


>gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 551

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/501 (67%), Positives = 410/501 (81%), Gaps = 5/501 (0%)

Query: 1   MFLRSLGATLAAA-RVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM 59
           M  RS  ATLAAA R FST+AA   T   A  + G    DTLGRR+ SLVY+KRSA I +
Sbjct: 1   MLRRSSRATLAAAARYFSTEAAATETAEKAVRRGG----DTLGRRIFSLVYSKRSAVIAI 56

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
           RKWK EGH V KY+LNRIVRELRK+KRYKHALEVCEWM  + ++KL+ GDYAVHLDL++K
Sbjct: 57  RKWKTEGHKVQKYQLNRIVRELRKMKRYKHALEVCEWMTQERELKLLPGDYAVHLDLVAK 116

Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           +RGL+SAE FFE+LPD+MRG  TC+ALLH+YV+ K   +AEALMEKM +C F+K PLPYN
Sbjct: 117 VRGLTSAEKFFEDLPDEMRGWQTCTALLHTYVKCKDVVKAEALMEKMRDCSFVKNPLPYN 176

Query: 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           HM++LYI++G+ DK  ++++ELKK+T+PDVVT+NLWL+ CAS ND E+A+K  LELKK K
Sbjct: 177 HMISLYIADGEFDKAKRIVEELKKSTTPDVVTFNLWLSMCASLNDVESAKKVLLELKKLK 236

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I+ DWI+YSTLT+LY+K +L E A +TLKEMEKR  RKNR+AYSSLLSLYTNMG KD V 
Sbjct: 237 IEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKRASRKNRLAYSSLLSLYTNMGDKDAVH 296

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           RIW KM SLF KMNDAEYTC++SSL+KL E EKAEN+Y EWES+SGTGDP+V NILLAAY
Sbjct: 297 RIWNKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGDPQVANILLAAY 356

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           INRNQ+E +E+FY R+V KG+ PCYTTWELLTWG+LK  QMEKVL+CFKKAI  V+ W P
Sbjct: 357 INRNQIEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQMEKVLDCFKKAITIVKTWSP 416

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
           D RL+   +  LEE+G+ +GAE  LV LRNAG+VSTEIYNSLLRTYAKAGKMPLI+ ERM
Sbjct: 417 DKRLVREVFKILEEKGNAEGAEEFLVMLRNAGYVSTEIYNSLLRTYAKAGKMPLIVTERM 476

Query: 480 QKDNVQMDAETQKVLKITSEM 500
           +KD V++D ET +++K TS M
Sbjct: 477 KKDGVELDEETHRLIKTTSSM 497


>gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Cucumis sativus]
 gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Cucumis sativus]
          Length = 531

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/518 (64%), Positives = 401/518 (77%), Gaps = 10/518 (1%)

Query: 2   FLRSLGATLA--AARVFSTKAAKITTLGLATEKKGA--------GGRDTLGRRLLSLVYA 51
             RS   +LA  AAR FS +A+   +   A E            GGRDTLGRRL+SL++ 
Sbjct: 1   MFRSFRPSLATAAARRFSGEASMAASENTALEGAAGTRVVSGKGGGRDTLGRRLMSLIFP 60

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           KRSA   +RKW+EEG TV KYELNR VRELRKLKRYKHALEVCEWM LQ D++LV GDYA
Sbjct: 61  KRSAVTAIRKWQEEGRTVRKYELNRNVRELRKLKRYKHALEVCEWMTLQKDMRLVPGDYA 120

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           VHLDLI KIRGL+ AE FFE+LPDK+R    C++LLH+YVQN  S +AEALMEKMSECGF
Sbjct: 121 VHLDLICKIRGLNRAEKFFEDLPDKIREQSVCTSLLHAYVQNNLSEKAEALMEKMSECGF 180

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
           LK PL +NHML+L+ISN QL+KVP +++ LKKNT PDVVTYNL L  C  QND E AE  
Sbjct: 181 LKSPLSFNHMLSLHISNKQLEKVPALIEGLKKNTKPDVVTYNLLLNVCTLQNDTEAAENI 240

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           FLE+KKTKI PDW+S+STL +LY K +L EKAA TLKEMEK   + NR++ SSLLSLYTN
Sbjct: 241 FLEMKKTKIQPDWVSFSTLANLYCKNQLTEKAAATLKEMEKMAFKSNRLSLSSLLSLYTN 300

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K+EV RIWKK+ S F KM+D EY C+ISSLVKL E E+AE +Y EWES+SGT D RV
Sbjct: 301 LGDKNEVYRIWKKLKSSFRKMSDREYMCMISSLVKLNELEEAEKLYTEWESVSGTRDTRV 360

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N++L AYI +NQ+E AESFYNR++ KG  P YTTWELLTWGYLK+ QMEKVL  F+KA+
Sbjct: 361 SNVMLGAYIKKNQIEQAESFYNRMLQKGTVPSYTTWELLTWGYLKENQMEKVLHFFRKAV 420

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             V+KW  D RL+     KLEEQG+I+G E LL+ LRNAGHV TEIYNSLLRTYAKAGKM
Sbjct: 421 NRVKKWNADERLVKGVCKKLEEQGNINGVEQLLLILRNAGHVDTEIYNSLLRTYAKAGKM 480

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           PLI+ ERM++DNVQ++ ET+++L++TS+M VSEVSS  
Sbjct: 481 PLIVAERMERDNVQLNDETRELLRLTSKMCVSEVSSTL 518


>gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/525 (61%), Positives = 409/525 (77%), Gaps = 15/525 (2%)

Query: 1   MFLRSLGATLAA-ARVFSTKAAKITTL------------GLATEKKG--AGGRDTLGRRL 45
           M LRS   TLA+  R+FS  A  + T             G AT +K    GGRDTLG RL
Sbjct: 1   MLLRSARPTLASICRLFSAAAGTVDTTAEAAVKTRSGGGGAATNRKETVVGGRDTLGGRL 60

Query: 46  LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           LSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CEWM LQ DIKL
Sbjct: 61  LSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVLQEDIKL 120

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEK 165
            +GDYAVHLDLISKIRGL+SAE FFE+LPD+MRG   C++LLHSYVQNK S +AEAL EK
Sbjct: 121 QAGDYAVHLDLISKIRGLNSAEKFFEDLPDQMRGHAACTSLLHSYVQNKLSDKAEALFEK 180

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
           M ECGFLK  LPYNHML+++IS GQ +KV  +++ELK  TSPD+VTYNLWL A AS ND 
Sbjct: 181 MGECGFLKSCLPYNHMLSMFISKGQFEKVSVLIKELKMKTSPDIVTYNLWLTAFASGNDV 240

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E AEK +L+ K++K++PDW++YS LT+LY K +  EKA   LKEMEK   +KNRVAY+SL
Sbjct: 241 EGAEKVYLKAKESKLNPDWVTYSVLTNLYAKTDNLEKAKLALKEMEKLVSKKNRVAYASL 300

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +SL+ N+G KD V   WKK+ S F KMNDAEY  +IS++VKLGEFE+A+ +YDEWES+SG
Sbjct: 301 ISLHANLGDKDGVNLTWKKVRSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSG 360

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           TGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YLK+  +EKVL+
Sbjct: 361 TGDARIPNLILAEYMNRDEILLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDLEKVLD 420

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
           CF+KAI SV+KW  + RL+ A   +LEEQG++ GAE L+  L+ AGHV+T++YNSLLRTY
Sbjct: 421 CFEKAIDSVKKWTVNVRLVKAVCKELEEQGNVKGAEKLMTLLQKAGHVNTQLYNSLLRTY 480

Query: 466 AKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           AKAG+M LI+ ERM KDNV++D ET++++++TS M V+E+SS  S
Sbjct: 481 AKAGEMALIVEERMAKDNVELDEETKELIRLTSRMRVTEISSTIS 525


>gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula]
 gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/515 (63%), Positives = 408/515 (79%), Gaps = 12/515 (2%)

Query: 1   MFLRSLGATLAA-ARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM 59
           M LRS+G+ LA  AR  ST+ A+    G+      +GG DTLGRRLLSLVY KRSA I +
Sbjct: 1   MSLRSVGSYLATTARHLSTEPAR---RGVTAASSSSGG-DTLGRRLLSLVYPKRSAVIAI 56

Query: 60  RKWKEEGHTV-HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
            KWKEEGHT+  KY+LNR++RELRK KRYKHALEVCEWM+LQ DIKLV GDYAV LDLI+
Sbjct: 57  NKWKEEGHTLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVQLDLIT 116

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL+SAE FFE+LPDKMRG  TC+ALLH+YVQN  + +AEALM KMSECGFL+ P+PY
Sbjct: 117 KVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLTNKAEALMSKMSECGFLRSPVPY 176

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N M++LYISNG+L+KVP++ +ELK NTSPDVVT+NL L ACAS+ND ETAE+  L+LKK 
Sbjct: 177 NRMMSLYISNGKLEKVPKLFEELKVNTSPDVVTFNLLLTACASENDVETAERVLLQLKKA 236

Query: 239 KIDPDWISYSTLTSLYIKM----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           K+DPDW++YSTLT+LYI+     +  EKAA+TLKEMEKRT R+ RVAYSSLLSL+ NMG 
Sbjct: 237 KVDPDWVTYSTLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGN 296

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            DEV RIW KM + F KM+D EY C+ISSLVKLG+F   EN+Y EWES+SGT D RV N+
Sbjct: 297 VDEVNRIWGKMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKEWESVSGTNDVRVSNL 356

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           LL +Y+++ Q+EMAE F N+LV KG+   Y++WELLT GYLKK  ++K L  F KAI SV
Sbjct: 357 LLTSYVDQGQMEMAEIFCNQLVEKGVCLSYSSWELLTRGYLKKKDVKKFLHYFGKAISSV 416

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
           ++W+PD RL+  A+  ++EQ  I+GAE LLV LRNAGHV+T IYN  L+TYA AGKMPL+
Sbjct: 417 KQWIPDPRLVQEAFTVIQEQAHIEGAEQLLVILRNAGHVNTNIYNLFLKTYAAAGKMPLV 476

Query: 475 IVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           + ERM+KDNVQ+D ET ++L +TS+M V  +S+++
Sbjct: 477 VAERMKKDNVQLDKETHRLLDLTSKMCV--ISAVY 509


>gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g02820, mitochondrial; Flags: Precursor
 gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 532

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/475 (64%), Positives = 389/475 (81%)

Query: 36  GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
           GGRDTLG RLLSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CE
Sbjct: 58  GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICE 117

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM +Q DIKL +GDYAVHLDLISKIRGL+SAE FFE++PD+MRG   C++LLHSYVQNK 
Sbjct: 118 WMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKL 177

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
           S +AEAL EKM ECGFLK  LPYNHML++YIS GQ +KVP +++ELK  TSPD+VTYNLW
Sbjct: 178 SDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLW 237

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           L A AS ND E AEK +L+ K+ K++PDW++YS LT+LY K +  EKA   LKEMEK   
Sbjct: 238 LTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVS 297

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           +KNRVAY+SL+SL+ N+G KD V   WKK+ S F KMNDAEY  +IS++VKLGEFE+A+ 
Sbjct: 298 KKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKG 357

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +YDEWES+SGTGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YL
Sbjct: 358 LYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYL 417

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           K+  MEKVL+CF KAI SV+KW  + RL+  A  +LEEQG++ GAE L+  L+ AG+V+T
Sbjct: 418 KRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNT 477

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           ++YNSLLRTYAKAG+M LI+ ERM KDNV++D ET++++++TS+M V+E+SS  S
Sbjct: 478 QLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTIS 532


>gi|17064738|gb|AAL32523.1| Unknown protein [Arabidopsis thaliana]
 gi|27311917|gb|AAO00924.1| Unknown protein [Arabidopsis thaliana]
          Length = 532

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/475 (64%), Positives = 389/475 (81%)

Query: 36  GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
           GGRDTLG RLLSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CE
Sbjct: 58  GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICE 117

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM +Q DIKL +GDYAVHLDLISKIRGL+SAE FFE++PD+MRG   C++LLHSYVQNK 
Sbjct: 118 WMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKL 177

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
           S +AEAL EKM ECGFLK  LPYNHML++YIS GQ +KVP +++ELK  TSPD+VTYNLW
Sbjct: 178 SDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLW 237

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           L A AS ND E AEK +L+ K+ K++PDW++YS LT+LY K +  EKA   L+EMEK   
Sbjct: 238 LTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALREMEKLVS 297

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           +KNRVAY+SL+SL+ N+G KD V   WKK+ S F KMNDAEY  +IS++VKLGEFE+A+ 
Sbjct: 298 KKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKG 357

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +YDEWES+SGTGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YL
Sbjct: 358 LYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYL 417

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           K+  MEKVL+CF KAI SV+KW  + RL+  A  +LEEQG++ GAE L+  L+ AG+V+T
Sbjct: 418 KRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNT 477

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           ++YNSLLRTYAKAG+M LI+ ERM KDNV++D ET++++++TS+M V+E+SS  S
Sbjct: 478 QLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTIS 532


>gi|108862755|gb|ABA99305.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215704853|dbj|BAG94881.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712260|dbj|BAG94387.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 514

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 255/472 (54%), Positives = 359/472 (76%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTLGRRLL L+Y KRSAA+ +R+W EEG TV KY+LNR+VRELRK +R+KHALE+CEWM 
Sbjct: 43  DTLGRRLLKLIYPKRSAAVVLRRWAEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMR 102

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            Q +++L+ GD+AVHLDL++K+RGL SAE FFE++P++ +GP TC+ALLH+YVQ+ +  +
Sbjct: 103 TQPEMRLLPGDHAVHLDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDK 162

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
           AEA++E+M++ G+L C LP+NHM++LY+S+G+L+KVP+M++EL++ T PD+VTYN+WL  
Sbjct: 163 AEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTY 222

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
           C+ +N  + AEK +  +K  ++ PDW+++S L S+YI   L  K    L EMEKR  RK 
Sbjct: 223 CSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKE 282

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           R AYSSLL+LY ++  +  + R+W+KM   F K +D EY C+++SL + G+  +AE+ Y 
Sbjct: 283 RAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYS 342

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           EWES SGT D R+PN +LA YI    +E AE F + +V KG+KP Y+TWEL  WGYL  G
Sbjct: 343 EWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDG 402

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
           +M+KVLEC KKA+  + KW P+ +L TA Y+++EE+GDI+ AE LLV  R AG+V+TEIY
Sbjct: 403 RMDKVLECLKKALSCLEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTEIY 462

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           NS+LRTYAKA  MPLI+ ERM +D V MD ET+ +L++TS+ P+ EVS++ S
Sbjct: 463 NSVLRTYAKAELMPLIVDERMDQDKVSMDDETRSLLRLTSKYPIGEVSTLMS 514


>gi|326505170|dbj|BAK02972.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 263/511 (51%), Positives = 372/511 (72%), Gaps = 2/511 (0%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMR 60
           M  R L A    AR+ S  A   +T G A      GG DTLG+RLL L+Y KRSA + +R
Sbjct: 1   MLSRRLAAATGYARLLSASAPAASTGG-AGGSISVGGGDTLGKRLLKLIYPKRSAVVVLR 59

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           +W EEG  VHKY+LNR+VRELRK +R+KHALE+CEWM  Q +I+L+ GD+AVHLDL++K+
Sbjct: 60  RWAEEGRAVHKYQLNRVVRELRKYRRFKHALEICEWMRTQPEIRLLPGDHAVHLDLVAKV 119

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           RGL+SAE FFE++P++ +GP TC++LLH+YVQ+    +AEA++++M++ G+L C LP+NH
Sbjct: 120 RGLASAEKFFEDVPERAKGPSTCNSLLHAYVQHGARDKAEAMLKEMADAGYLTCALPFNH 179

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           M++LY+S G+L+KVP+M++EL++ T PD+VTYN+WL  C+ +N  ++AEK F  +K  ++
Sbjct: 180 MMSLYMSVGELEKVPEMIKELRRYTIPDLVTYNIWLTYCSRKNSVKSAEKVFDLMKDDRV 239

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            PDW+++S L S+YI   L  K    L EMEKR  RK R AYSSLL++Y ++  +  + R
Sbjct: 240 VPDWMTFSLLASIYINAGLHVKGRDALVEMEKRASRKERAAYSSLLTMYASLSDRGNLDR 299

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W KM   F K +DAEY C+++SL + G+   AE +Y EWES SGT D R+PN +L+ YI
Sbjct: 300 VWSKMRQTFRKFSDAEYKCMLTSLTRFGDIAAAEFVYGEWESQSGTKDSRIPNTILSFYI 359

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ-MEKVLECFKKAIGSVRKWVP 419
              ++E AESF   +V KG+KP Y+TWEL  WGYL   +  +KV+EC KKA+ S+ KW P
Sbjct: 360 KNGEMEKAESFLQYIVQKGVKPSYSTWELFVWGYLGNDERTDKVMECLKKALSSLEKWEP 419

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
           + +L+ A ++++E++GDI+ AE LLV LR AG+V+TEIYN +LRTYAKA  MPLII ERM
Sbjct: 420 NPQLVAALFSQIEKKGDIEAAEELLVVLRGAGYVTTEIYNLVLRTYAKAEMMPLIIDERM 479

Query: 480 QKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
            +D V MD ET+++LK TS+ P+ EVS++ S
Sbjct: 480 DQDKVSMDDETRRLLKSTSKYPIGEVSTLMS 510


>gi|357151797|ref|XP_003575907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 251/472 (53%), Positives = 359/472 (76%), Gaps = 1/472 (0%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTLG+RLL L+Y KRSA + +R+W EEG TV KY+LNR+VRELRK +R+KHALE+CEWM 
Sbjct: 30  DTLGKRLLKLMYPKRSAVVVLRRWTEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMR 89

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            Q ++KL+ GD+AVHLDL++K+RGL+SAE FFE++P++ +GP TC+ALLH+YVQN    +
Sbjct: 90  TQPEMKLLPGDHAVHLDLVAKVRGLASAEKFFEDVPERAKGPSTCNALLHAYVQNGVRDK 149

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
           AEA++ +M++ G+L C LP+NHM+++Y+S+G+L+KVP+M++EL++ T PD+VTYN+WL  
Sbjct: 150 AEAMLREMADAGYLTCALPFNHMMSMYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTY 209

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
           C+ +N  +TAEK F  +K  K+ PDW+++S + S+YI   L  K    L EMEKR  RK 
Sbjct: 210 CSRKNSVKTAEKVFDLMKDDKVFPDWMTFSLMASIYINAGLHVKGRDALVEMEKRASRKE 269

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           R AYSSLL+LY ++  +  + R+W KM  +F K +D EY C+++SL + G+   AE++Y 
Sbjct: 270 RTAYSSLLTLYASLSDRGNLDRVWSKMREIFRKFSDTEYKCMLTSLTRFGDITAAESVYS 329

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           EWES SGT D R+PN +L+ +I   ++EMAESF   ++ KG+KP Y+TWEL  WGYL   
Sbjct: 330 EWESESGTRDSRIPNTILSFHIKNGKMEMAESFLQHIMQKGVKPSYSTWELFVWGYLGND 389

Query: 399 Q-MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           + ++K+LEC KKA+ S+ KW P+ +L+ A ++ +E++GDI+ AE LLV LR AG+V+TEI
Sbjct: 390 ERIDKILECLKKALSSLDKWEPNPQLVAALFSLIEKRGDIEAAEELLVVLRGAGYVTTEI 449

Query: 458 YNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           YNS+LRTY+KA  MPLII ERM +D V MD ET+ +LK+TS+ P+ EVS+I 
Sbjct: 450 YNSVLRTYSKAEMMPLIIDERMDQDKVSMDEETRGLLKLTSKYPIGEVSTIM 501


>gi|242083618|ref|XP_002442234.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
 gi|241942927|gb|EES16072.1| hypothetical protein SORBIDRAFT_08g016710 [Sorghum bicolor]
          Length = 501

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/505 (49%), Positives = 365/505 (72%), Gaps = 5/505 (0%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEE 65
           L AT    R+FS  +A+    G A     AG  DTLG+RLL L+Y KRSA + +R+W EE
Sbjct: 2   LAAT--GGRLFSAASARG---GHAGGGVSAGSGDTLGKRLLKLIYPKRSAVVVLRRWAEE 56

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G TV KY+LNR+VRELRK  R+KHALE+CEWM  + +++L+ GD+AVHLDL++K+RGL+S
Sbjct: 57  GRTVEKYQLNRVVRELRKYGRFKHALEICEWMRTRPEMRLLPGDHAVHLDLVAKVRGLAS 116

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           A  FFE++P++ + P TC+ALLH+YVQ+    +AEA+M +M+  G+L C LP+NHM++LY
Sbjct: 117 AVKFFEDMPERAKAPSTCNALLHAYVQHGAREKAEAMMAEMARAGYLTCALPFNHMMSLY 176

Query: 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
           +++G+L++VP+M++EL++ T PD+VTYN+WL  C+ +   ++AEK F  +K  ++ PDW+
Sbjct: 177 MASGELERVPEMIKELRRYTVPDLVTYNMWLTYCSKKKSVKSAEKVFALMKDDRVVPDWM 236

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           ++S L S+YI   L  +    L EMEK   RK R AYSSLL+LY ++  +  + R+W KM
Sbjct: 237 TFSLLGSIYINAGLHVEGRNALVEMEKMASRKERAAYSSLLTLYASLSDRGNLDRVWNKM 296

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
              F K +D EY C+++SL +  +   AE +Y EWES SGT D R+PN +L+ YI    +
Sbjct: 297 RETFRKFSDTEYKCMLTSLTRFNDIAAAEGLYREWESASGTRDSRIPNTILSYYIKNGMI 356

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           E AESF  ++V KG+KP Y+TWEL  WGYL   + +KVLEC KKA+ S+ KW P+H L T
Sbjct: 357 EKAESFLGQIVEKGVKPSYSTWELFIWGYLGDNKTDKVLECLKKALSSLEKWEPNHELAT 416

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQ 485
           A ++++E+ GDI+ AE LLV  R+AG+V+TE+YNS+LRTYA+A  MPLI+ ERM++D V 
Sbjct: 417 AIFSQVEKTGDIEAAEKLLVVFRDAGYVTTEMYNSVLRTYAEAKLMPLIVDERMEQDKVA 476

Query: 486 MDAETQKVLKITSEMPVSEVSSIFS 510
           MD ET+++L++TS+ P+ EVS++ S
Sbjct: 477 MDVETRRLLRLTSKYPIGEVSTLMS 501


>gi|226530677|ref|NP_001151760.1| tetratricopeptide-like helical [Zea mays]
 gi|195649553|gb|ACG44244.1| tetratricopeptide-like helical [Zea mays]
 gi|223942137|gb|ACN25152.1| unknown [Zea mays]
 gi|413916645|gb|AFW56577.1| Tetratricopeptide-like helical [Zea mays]
          Length = 501

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 239/475 (50%), Positives = 351/475 (73%), Gaps = 1/475 (0%)

Query: 32  KKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHAL 91
           + G  G DTLG+RLL L+Y KRSA + +++W +EG TV KY+LNR+VRELRK  R+KHAL
Sbjct: 24  RGGHAGGDTLGKRLLKLIYPKRSAVVVLQRWADEGRTVQKYQLNRVVRELRKYGRFKHAL 83

Query: 92  EVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151
           E+CEWM  Q +++L+ GD+AVHLDL++K+RGL+SA  FFE++P++ +GP TC+ALLH+YV
Sbjct: 84  EICEWMRTQPEMRLLPGDHAVHLDLVAKVRGLASATKFFEDMPERAKGPSTCNALLHAYV 143

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211
           QN    +AEA++ +M+  G+L C LP+NHM++LY++ G+L++VP+M++EL++ T PD+VT
Sbjct: 144 QNGAREKAEAMLAEMARVGYLTCALPFNHMMSLYMATGELERVPEMIKELRRYTLPDLVT 203

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           YN+WL  C+ ++  ++AEK F  +K   + PDW+++S L S+YI   L  +    L EME
Sbjct: 204 YNIWLTYCSKKDSVKSAEKVFGLMKDDCVVPDWMTFSLLGSIYINAGLHVEGRNALVEME 263

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           KR  RK R AYSSLL+LY ++  +  + R+W KM   F K +D EY C+++SL++  +  
Sbjct: 264 KRASRKERAAYSSLLTLYASLSDRGNLDRVWNKMRGTFRKFSDTEYKCMLTSLLRFDDIA 323

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            AE+I+ EWES SGT D R+PN +L+ YI    ++ AESF + +V KG+KP Y+TWE   
Sbjct: 324 AAESIFSEWESTSGTRDSRIPNTILSYYIKNGMIKKAESFLDHIVEKGVKPSYSTWEAFV 383

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           WGYL   + +KVLEC KKA+  + KW P+H L TA ++++E+ GDI+ AE LLV  R+A 
Sbjct: 384 WGYLGD-KTDKVLECMKKALSCLEKWEPNHELATAIFSQIEKTGDIEAAEKLLVIFRDAE 442

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVS 506
           +V+TE+YNS+LRTYA+A  MPLI+ ERM++D V MD ET+++L++TS+ P+ EVS
Sbjct: 443 YVTTEMYNSVLRTYAEAKLMPLIVDERMEQDKVAMDVETKRLLRLTSKYPIGEVS 497


>gi|125579556|gb|EAZ20702.1| hypothetical protein OsJ_36321 [Oryza sativa Japonica Group]
          Length = 491

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/472 (50%), Positives = 336/472 (71%), Gaps = 8/472 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTLGRRLL L+Y KRSAA+ +R+W EEG TV KY+LNR+V +LRK +R+KHALE      
Sbjct: 28  DTLGRRLLKLIYPKRSAAVVLRRWAEEGRTVQKYQLNRVVCQLRKYRRFKHALE------ 81

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
               +    G          +  GL SAE FFE++P++ +GP TC+ALLH+YVQ+ +  +
Sbjct: 82  --RKLSFFRGPRRCTSTSCQRSGGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDK 139

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
           AEA++E+M++ G+L C LP+NHM++LY+S+G+L+KVP+M++EL++ T PD+VTYN+WL  
Sbjct: 140 AEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTY 199

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
           C+ +N  + AEK +  +K  ++ PDW+++S L S+YI   L  K    L EMEKR  RK 
Sbjct: 200 CSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKE 259

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           R AYSSLL+LY ++  +  + R+W+KM   F K +D EY C+++SL + G+  +AE+ Y 
Sbjct: 260 RAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYS 319

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           EWES SGT D R+PN +LA YI    +E AE F + +V KG+KP Y+TWEL  WGYL  G
Sbjct: 320 EWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDG 379

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
           +M+KVLEC KKA+  + KW P+ +L TA Y+++EE+GDI+ AE LLV  R AG+V+TEIY
Sbjct: 380 RMDKVLECLKKALSCLEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTEIY 439

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
           NS+LRTYAKA  MPLI+ ERM +D V MD ET+ +L++TS+ P+ EVS++ S
Sbjct: 440 NSVLRTYAKAELMPLIVDERMDQDKVSMDDETRSLLRLTSKYPIGEVSTLMS 491


>gi|125536853|gb|EAY83341.1| hypothetical protein OsI_38557 [Oryza sativa Indica Group]
          Length = 444

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/421 (51%), Positives = 314/421 (74%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
            L++CEWM  Q +++L+ GD+AVHLDL++K+RGL SAE FFE++P++ +GP TC+ALLH+
Sbjct: 24  CLQICEWMRTQPEMRLLPGDHAVHLDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHA 83

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209
           YVQ+ +  +AEA++E+M++ G+L C LP+NHM++LY+S+G+L+KVP+M++EL++ T PD+
Sbjct: 84  YVQHGRRDKAEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIPDL 143

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           VTYN+WL  C+ +N  + AEK +  +K  ++ PDW+++S L S+YI   L  K    L E
Sbjct: 144 VTYNIWLTYCSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIYINAGLHVKGRDALVE 203

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           MEKR  RK R AYSSLL+LY ++  +  + R+W+KM   F K +D EY C+++SL + G+
Sbjct: 204 MEKRASRKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGD 263

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
             +AE+ Y EWES SGT D R+PN +LA YI    +E AE F + +V KG+KP Y+TWEL
Sbjct: 264 IAEAESFYSEWESASGTRDSRIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWEL 323

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
             WGYL  G+M+KVLEC KKA+  + KW P+ +L TA Y+++EE+GDI+ AE LLV  R 
Sbjct: 324 FVWGYLSDGRMDKVLECLKKALSCLEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFRE 383

Query: 450 AGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           AG+V+TEIYNS+LRTYAKA  MPLI+ ERM +D V MD ET+ +L++TS+ P+ EVS++ 
Sbjct: 384 AGYVTTEIYNSVLRTYAKAELMPLIVDERMDQDKVSMDDETRSLLRLTSKYPIGEVSTLM 443

Query: 510 S 510
           S
Sbjct: 444 S 444


>gi|148909871|gb|ABR18022.1| unknown [Picea sitchensis]
          Length = 561

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 199/485 (41%), Positives = 286/485 (58%), Gaps = 10/485 (2%)

Query: 23  ITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELR 82
           ++T  +AT+K      D L RR+  L   KRSA   + +W  EG  V K+ L  IVRELR
Sbjct: 78  VSTEAVATQKTSESLPDNLYRRISRLGDPKRSAVEELERWITEGREVKKWVLREIVRELR 137

Query: 83  KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDT 142
           K  R+KHALEV EWM  ++   +  GD A+HL LI+K+ G++SAE ++ +L    +   T
Sbjct: 138 KYYRHKHALEVFEWMSKKFPCSV--GDRAMHLGLIAKVHGIASAEKYYVDLHHYEKNHLT 195

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
             ALL+ YVQ K   ++EA+ME++ + GF+K   PY  M+ LY++  Q +KVP ++QE+K
Sbjct: 196 YFALLNCYVQEKNIEKSEAIMEELKDLGFIKTAFPYTEMMTLYMNTEQFEKVPLVIQEMK 255

Query: 203 K-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELP 260
           K   S D+  YN+W+ + A+ +D +   + F E+++   I+ DW  YSTL ++YI  ++ 
Sbjct: 256 KKGISLDIHCYNIWMRSYAALSDMDQVAEVFNEIERDDNINTDWSIYSTLANIYINAKVL 315

Query: 261 EKAATTLKEMEKRT----CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +KA + LKEME +      +K+++AY+ L+SL+  +G KDEV RIW+     F KM +  
Sbjct: 316 DKAGSALKEMENKMKEIETKKDQLAYNHLISLHGRLGNKDEVYRIWQSFELAFPKMTNRS 375

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y C++SSLV +G+ E AE    +WES+    D R+   LL AYI +  L+ AE    R+V
Sbjct: 376 YVCLLSSLVGMGDIEGAEVFIKKWESMKTFDDSRIYYALLNAYIEKGWLQKAELLLERVV 435

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQ 434
            KG KP   TWE L  GY++  Q+ K +E  K+  +I     W P    + A     E+Q
Sbjct: 436 DKGGKPNAKTWETLAEGYIQNEQIHKAMEAMKRSLSIEGNSPWQPKSVNVLALLKHFEKQ 495

Query: 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           GD+  AE     LR    VSTEIYNSLLRTY   GK+P  I E M +DNV  D ET  +L
Sbjct: 496 GDVKSAEEFFKILRGVKFVSTEIYNSLLRTYVYVGKVPPRISELMLEDNVSPDEETDNLL 555

Query: 495 KITSE 499
           K T E
Sbjct: 556 KQTVE 560


>gi|297729245|ref|NP_001176986.1| Os12g0527850 [Oryza sativa Japonica Group]
 gi|255670359|dbj|BAH95714.1| Os12g0527850 [Oryza sativa Japonica Group]
          Length = 313

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 141/254 (55%), Positives = 202/254 (79%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTLGRRLL L+Y KRSAA+ +R+W EEG TV KY+LNR+VRELRK +R+KHALE+CEWM 
Sbjct: 28  DTLGRRLLKLIYPKRSAAVVLRRWAEEGRTVQKYQLNRVVRELRKYRRFKHALEICEWMR 87

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            Q +++L+ GD+AVHLDL++K+RGL SAE FFE++P++ +GP TC+ALLH+YVQ+ +  +
Sbjct: 88  TQPEMRLLPGDHAVHLDLVAKVRGLPSAEKFFEDMPERAKGPSTCNALLHAYVQHGRRDK 147

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
           AEA++E+M++ G+L C LP+NHM++LY+S+G+L+KVP+M++EL++ T PD+VTYN+WL  
Sbjct: 148 AEAMLEEMAKAGYLTCALPFNHMMSLYMSSGELEKVPEMIKELRRYTIPDLVTYNIWLTY 207

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
           C+ +N  + AEK +  +K  ++ PDW+++S L S+YI   L  K    L EMEKR  RK 
Sbjct: 208 CSKKNSVKAAEKVYDLMKDERVVPDWMTFSLLGSIYINAGLHVKGRDALVEMEKRASRKE 267

Query: 279 RVAYSSLLSLYTNM 292
           R AYSSLL+LY ++
Sbjct: 268 RAAYSSLLTLYASL 281


>gi|225459164|ref|XP_002283946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Vitis vinifera]
          Length = 475

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 273/462 (59%), Gaps = 4/462 (0%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           RD L  R+L LV+ +RSA   ++ W ++GH V   +L  + R+L K KR+KHALE+  WM
Sbjct: 10  RDDLTSRMLKLVFPRRSATAVLQNWIDQGHKVTASDLRNVSRQLLKSKRHKHALEILAWM 69

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
           E Q   ++ + D+A+ L+LI KI+ L+ AE +FE+LP+       C  LLH+YV+ +   
Sbjct: 70  EAQNRFQMSAADHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIE 129

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWL 216
           +AEALM K+++ G    P P+N M+ LY++  Q ++VP ++ ++K+N  P +V++YNLW+
Sbjct: 130 KAEALMLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWM 189

Query: 217 AACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +AC+  +   +AE  + ++   K ++  W + STL ++Y+K  L +KA   LK  EK+  
Sbjct: 190 SACSEVSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLS 249

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             NR+ Y  L+++Y ++  K+EVLR+W+    +  ++    Y C++  LVKLG+  +AE 
Sbjct: 250 AHNRLGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAER 309

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I+ EWES     D RV N+LL AY+    ++ AES +   + +G  P Y TWE+L  G++
Sbjct: 310 IFREWESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEILMEGWM 369

Query: 396 KKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
           K   M+K +   KK    ++   W P+H L+TA    LEE G+++     +  +   G  
Sbjct: 370 KSQNMDKAINAMKKGFSMLKHCDWRPNHGLVTAIARYLEEHGNVNDLNQYVKVIHQLGVA 429

Query: 454 STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
              +Y SLLR +    +    I++ M+KD ++MD ET  +++
Sbjct: 430 KLPLYKSLLRMHLLFQRPVFDILKMMEKDEIEMDDETSALVQ 471


>gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa]
 gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/426 (38%), Positives = 266/426 (62%), Gaps = 7/426 (1%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME-LQY 101
           RR+  +   +  +   + +W+ EG  + K+EL R+V+ELRK KRY+ ALEV +WM+  Q 
Sbjct: 73  RRISLMENPELGSGSVLNRWENEGKRLTKWELCRVVKELRKYKRYQQALEVYDWMKNRQE 132

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161
             +L   D A+ LDLI+K+RG+S+AE+FF +LP+  +      ALL++YVQN+   +AE 
Sbjct: 133 RFRLSPSDAAIQLDLIAKVRGVSTAEDFFLSLPNTFKDRRVYGALLNAYVQNRMREKAET 192

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L ++M + G++   LP+N  + LY++  + DKV  M+ E+ +KN   D+ +YN+WL++C 
Sbjct: 193 LFDEMRDKGYVTHALPFNVTMTLYMNIKEYDKVDLMISEMNEKNIKLDIYSYNIWLSSCG 252

Query: 221 SQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
           SQ   +  E+ + ++K  + I+P+W ++ST+ ++YIKM   EKA   L+ +E R   ++R
Sbjct: 253 SQGSADKMEQVYEQMKSDRSINPNWTTFSTMATMYIKMGQFEKAEDCLRRVESRITGRDR 312

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + Y  LLSLY N+G K+EV R+W    S+F  + +  Y  +ISSLV+L + E AE IY+E
Sbjct: 313 IPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAIISSLVRLDDIEGAEKIYEE 372

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           W SI  + DPR+ N+ +AAY+ +  L+ A+SF++ ++  G KP   TWE+L  G++ + +
Sbjct: 373 WLSIKTSYDPRIANLFIAAYVYQGNLDEAKSFFDHMLEDGGKPNSNTWEILAQGHISERR 432

Query: 400 MEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
             + L C K+A    GS + W P+   +T+ +   EE+ D+   E L   LR +GH+  +
Sbjct: 433 TSEALSCLKEAFVTPGS-KSWKPNPANVTSFFKLCEEEADMANKEALEGFLRQSGHLKDK 491

Query: 457 IYNSLL 462
            Y SLL
Sbjct: 492 AYASLL 497


>gi|225453344|ref|XP_002270492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02150
           [Vitis vinifera]
          Length = 527

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/426 (39%), Positives = 255/426 (59%), Gaps = 10/426 (2%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           RR+  +   +  +A  + +W+ EG  + K+EL R+V+ELRK KR+K ALEV EWM  + +
Sbjct: 62  RRISLMENPEMGSASVLNQWENEGKRLTKWELCRVVKELRKFKRFKMALEVYEWMNNRGE 121

Query: 103 -IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161
             +L S D A+ LDLI+K+ G+SSAE++F  LPD ++      ALL++YVQ K   +AE 
Sbjct: 122 RFRLSSSDAAIQLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEI 181

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+EK+   G+   PLP+N M+ LY++  +LDKV  M+ E+  KN   D+ +YN+WL++C 
Sbjct: 182 LIEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSSCE 241

Query: 221 SQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
           S    E  E+ F ++K +  I+P+W ++ST+ ++YIK+   EKA   LK++E R   ++R
Sbjct: 242 ST---ERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITNRDR 298

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + Y  L+SLY + G K EV R W    S F  + +  Y  +ISSLV++G+ E AE IY+E
Sbjct: 299 MPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEE 358

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           W S+  + DPR+ N+LL  Y+    LE AE F + ++  G KP  TTWE+L  G     +
Sbjct: 359 WLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKK 418

Query: 400 MEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           +   L CFK+A+   GS   W P    ++A  +  EE+ D    E L+  LR  G +  E
Sbjct: 419 ISDALSCFKRAVLAEGS-NGWKPKPVNVSAFLDLCEEEADTATKEALMGLLRQMGCLEDE 477

Query: 457 IYNSLL 462
            Y SL 
Sbjct: 478 PYASLF 483


>gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa]
 gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 273/454 (60%), Gaps = 6/454 (1%)

Query: 15  VFSTKAAKITTLG-LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYE 73
           V +   ++I   G +  E++     + + RR+  +   +  +   + +W+ +G  + K+E
Sbjct: 44  VITCSISQIHNYGTVDYERRPMMKWNAIYRRISLMENPELGSGSVLNQWENDGKRLTKWE 103

Query: 74  LNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           L R+V+ELRK KRY+ ALEV +WM   Q    L   D A+ LDLI+K+RG+SSAE+FF  
Sbjct: 104 LCRVVKELRKYKRYQQALEVYDWMNNRQERFGLSPSDAAIQLDLIAKVRGVSSAEDFFLR 163

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LP+  +      ALL++YV+N+   +AE+L+++M    ++   LPYN M+ LY++  + D
Sbjct: 164 LPNTFKDRRIYGALLNAYVRNRMREKAESLIDEMRGKDYVTHALPYNVMMTLYMNINEYD 223

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTL 250
           KV  ++ E+ +KN   D+ +YN+WL++C  Q   +  E+ F ++K    I+P+W ++ST+
Sbjct: 224 KVDLIISEMNEKNIKLDIYSYNIWLSSCGLQGSADKMEQVFEQMKSDGSINPNWTTFSTM 283

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            ++YIKM   EKA   L+ +E R   ++R+ Y  LLSLY N+G K+EV R+W    S+F 
Sbjct: 284 ATMYIKMGKFEKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEVYRVWNIYKSIFP 343

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
            + +  Y  +ISSLV++ + E AE IY+EW SI  + DPR+ N+ +AA++ +  L+ AES
Sbjct: 344 SIPNLGYHAMISSLVRMDDIEGAEKIYEEWLSIKTSYDPRIANLFMAAFVYQGNLDKAES 403

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPDHRLITAAY 428
           F++ ++ +G KP   +WE+L  G++ + +  + L C K+A  +   + W P+   +++ +
Sbjct: 404 FFDHMLEEGGKPNSHSWEILAQGHISERRTSEALSCLKEAFATPGSKSWKPNPANVSSFF 463

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
              EE+ D+   E L   LR +GH+  + Y  LL
Sbjct: 464 KLCEEEVDMASKEALASFLRQSGHLKDKAYALLL 497


>gi|356522970|ref|XP_003530115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Glycine max]
          Length = 546

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 274/455 (60%), Gaps = 7/455 (1%)

Query: 15  VFSTKAAKITTLGLAT-EKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYE 73
           V +   +KI + G    E++   G + + RR+      +  +A  + +W+ EG  + K+E
Sbjct: 56  VTTCSISKIHSYGTVDYERRPIVGWNDVYRRISLNPNPQVGSAEVLNQWENEGRHLTKWE 115

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           L+R+V+ELRK KR++ ALEV +WM  + +  ++   D A+ LDLI+K+RGLSSAE FF +
Sbjct: 116 LSRVVKELRKYKRFRRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGLSSAEAFFLS 175

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           L DK++   T  ALL+ YV ++   +AE+L + M   G++   LP+N M+ LY++  +  
Sbjct: 176 LEDKLKDKKTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHALPFNVMMTLYMNLNEYA 235

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTL 250
           KV  +  E+ +KN   D+ TYN+WL++C SQ   E  E+ F +++K   I P+W ++ST+
Sbjct: 236 KVDILASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMEKDPSIIPNWSTFSTM 295

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+YI+M+  EKA   L+++E R   ++R+ +  LLSLY ++G KDEV R+W    S+F 
Sbjct: 296 ASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVCRVWNTYKSIFP 355

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
            + +  Y  +ISSLVKL + E AE +Y+EW S+  + DPR+ N+L+  Y+ +   + A S
Sbjct: 356 SIPNLGYHAIISSLVKLDDIEVAEKLYEEWISVKSSYDPRIGNLLIGWYVKKGDTDKALS 415

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAA 427
           F+ +++  G  P   TWE+L+ G++   ++ + + C K+A    G  + W P    ++A 
Sbjct: 416 FFEQMLNDGCIPNSNTWEILSEGHIADKRISEAMSCLKEAFMAAGGSKSWRPKPSYLSAF 475

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
               +EQ D++ AE L+  LR +    +++Y SL+
Sbjct: 476 LELCQEQDDMESAEVLIGLLRQSKFNKSKVYASLI 510


>gi|297848282|ref|XP_002892022.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337864|gb|EFH68281.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 523

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 250/413 (60%), Gaps = 5/413 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
           AA  + +W++ G  + K+EL R+V+ELRK KR   ALEV +WM  + +  +L + D A+ 
Sbjct: 82  AASVLNQWEKGGRKLTKWELCRVVKELRKYKRPNQALEVYDWMNNRGERFRLSASDAAIQ 141

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI K+RG+S AE FF  LP+  +      +LL++YV+ K   +AEAL+  M + G+  
Sbjct: 142 LDLIGKVRGISDAEQFFLTLPENFKDRRVYGSLLNAYVRAKSREKAEALLHTMRDKGYAL 201

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
            PLP+N M+ LY++  + DKV  M+ E+K K+   D+ +YN+WL++C S    E  E  +
Sbjct: 202 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 261

Query: 233 LELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            ++K    I+P+W ++ST+ ++YIKM   EKA   L+++E R   +NR+ Y  LLSLY +
Sbjct: 262 QQMKSDVSINPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 321

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K E+ R+W    S+   + +  Y  ++SSL ++G+ E AE +Y+EW  +  + DPR+
Sbjct: 322 VGNKKELYRVWNVYKSVVPSIPNLGYHALVSSLARMGDIEGAEKVYEEWLPVKSSYDPRI 381

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           PN+L+  Y+  +QLE AE  ++ +V  G KP  +TWE+L  G+ +K  + + L C +KA 
Sbjct: 382 PNLLMNVYVKNDQLEKAEGLFDHMVEMGGKPSSSTWEILADGHTRKRCIPEALTCLRKAF 441

Query: 412 GS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
            +     W P   +++  +   EE+ D+   E +L  LR +GH+  + Y +L+
Sbjct: 442 SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGHLEDKAYQALI 494


>gi|297734632|emb|CBI16683.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/405 (40%), Positives = 246/405 (60%), Gaps = 10/405 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAV 112
            +A  + +W+ EG  + K+EL R+V+ELRK KR+K ALEV EWM  + +  +L S D A+
Sbjct: 7   GSASVLNQWENEGKRLTKWELCRVVKELRKFKRFKMALEVYEWMNNRGERFRLSSSDAAI 66

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
            LDLI+K+ G+SSAE++F  LPD ++      ALL++YVQ K   +AE L+EK+   G+ 
Sbjct: 67  QLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAYVQAKMRDKAEILIEKLRNKGYA 126

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
             PLP+N M+ LY++  +LDKV  M+ E+  KN   D+ +YN+WL++C S    E  E+ 
Sbjct: 127 TTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDIYSYNIWLSSCEST---ERMEQV 183

Query: 232 FLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
           F ++K +  I+P+W ++ST+ ++YIK+   EKA   LK++E R   ++R+ Y  L+SLY 
Sbjct: 184 FEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLKKVESRITNRDRMPYHYLISLYG 243

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G K EV R W    S F  + +  Y  +ISSLV++G+ E AE IY+EW S+  + DPR
Sbjct: 244 STGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVGDLEGAEKIYEEWLSVKSSYDPR 303

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N+LL  Y+    LE AE F + ++  G KP  TTWE+L  G     ++   L CFK+A
Sbjct: 304 IGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWEILAEGNTGVKKISDALSCFKRA 363

Query: 411 I---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
           +   GS   W P    ++A  +  EE+ D    E L+  LR  G+
Sbjct: 364 VLAEGS-NGWKPKPVNVSAFLDLCEEEADTATKEALMGLLRQMGY 407


>gi|449432307|ref|XP_004133941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Cucumis sativus]
 gi|449525818|ref|XP_004169913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Cucumis sativus]
          Length = 537

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 264/429 (61%), Gaps = 5/429 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           + + RR+  +   +  +A  + +W+ EG  + K+EL+R+V+ELRK KR++ ALE+ +WM 
Sbjct: 70  NAIYRRISLMENPELGSASVLNQWENEGKNITKWELSRVVKELRKYKRFERALEIYDWMS 129

Query: 99  LQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
            + +  +L + D A+ LDLISK+RG+ SAE +F  LP+ ++      ALL++Y + ++  
Sbjct: 130 NREERFRLTTSDAAIQLDLISKVRGIKSAEEYFLRLPNHLKDRRIYGALLNAYAKGRQRE 189

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL 216
           +AE L+EKM   GF   PLP+N M+ LY++  + +KV  ++ E+ +N+   D+ +YN+WL
Sbjct: 190 KAENLLEKMRTKGFTTHPLPFNVMMTLYMNVKEYEKVESLVSEMTENSIQLDIYSYNIWL 249

Query: 217 AACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           ++C  Q   E  E+ + ++K+ + I+ +W ++ST+ ++YIKM L EKA   L+ +E R  
Sbjct: 250 SSCGLQGSTEKMEEVYEQMKQDRTINANWTTFSTMATMYIKMGLMEKAEECLRRVESRIV 309

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
            ++R+ Y  L+SLY ++G K+E+ R+W    ++F  + +  Y  +IS+L+++G+ E AE 
Sbjct: 310 GRDRIPYHYLISLYGSVGNKEEMYRVWNIYKNVFPTIPNLGYHAIISALIRVGDVEGAEK 369

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           IY+EW ++  T DPR+ N+ +  Y+       AESF++ +V  G KP  +TWE+L   + 
Sbjct: 370 IYEEWLTVKSTYDPRIANLFIGWYVKEGNTSKAESFFDHMVEVGGKPNSSTWEILVDRHT 429

Query: 396 KKGQMEKVLECFKKAIGS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
           K+G++   L  +K+A  +   + W P    + A ++  E++GDI   E L+  LR   ++
Sbjct: 430 KEGRVSDALASWKEAFSAEGSKSWRPKPYNVLAYFDLCEKEGDIASKEVLVGLLRQPKYL 489

Query: 454 STEIYNSLL 462
             + Y SL+
Sbjct: 490 QDKTYASLI 498


>gi|242076656|ref|XP_002448264.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
 gi|241939447|gb|EES12592.1| hypothetical protein SORBIDRAFT_06g024190 [Sorghum bicolor]
          Length = 515

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 261/456 (57%), Gaps = 5/456 (1%)

Query: 19  KAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIV 78
           + AK+ + G    ++    R +   R +++ +  R    T+  W E    + K+EL RI 
Sbjct: 59  RVAKVHSYGAVDYERRPPLRWSTLYRRIAVGHGGRPVGRTLGAWDEGERRLDKWELCRIA 118

Query: 79  RELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137
           +ELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+S AE +F+ LPD M
Sbjct: 119 KELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEKYFDELPDAM 178

Query: 138 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           +   T  +LL+ Y Q     + E   E+M + GF    LP N ++N Y+ +G+ ++V  +
Sbjct: 179 KDKRTYGSLLNVYAQAMMKEKTEDTFEQMRKKGFASDTLPCNVLMNFYVDSGEPNEVLAI 238

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYI 255
           + E+K +N S DV TYN+W+ +CA++ D E  E+ F ++     +  +W +Y+TL S+YI
Sbjct: 239 IDEMKERNVSFDVCTYNIWIKSCAAKQDAEEMERVFSQMIADESVVANWTTYTTLASMYI 298

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K+   EKA   LK+ EKRT  + +  +  L++LY+++G K+EV RIW    + F  +++ 
Sbjct: 299 KLGNSEKAEECLKDAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRIWNWYKATFPMIHNL 358

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  ++S+LV++G+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR 
Sbjct: 359 GYQELLSALVRIGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAKEGLITKAEQTLNRF 418

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEE 433
           V KG  P   TWE+L   Y+K  ++ + L C +K  AI S  KW P    + +     +E
Sbjct: 419 VEKGGNPKPNTWEILATAYMKDDKISEALSCMEKATAIKSANKWKPRPTNVESLLASFKE 478

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
           + D +GA+ L+  L + G    E Y SL+ TYA AG
Sbjct: 479 KNDAEGADRLVSVLTSRGCAEDEEYKSLINTYAFAG 514


>gi|32488964|emb|CAE04345.1| OSJNBb0038F03.9 [Oryza sativa Japonica Group]
          Length = 511

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 263/454 (57%), Gaps = 7/454 (1%)

Query: 19  KAAKITTLG-LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           + AK+ + G L  E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI
Sbjct: 55  QVAKVHSYGALDYERRAALRWSSLYRRI-AVGHGGRPVGRTLGAWDEGERRLDKWELCRI 113

Query: 78  VRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            RELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+S AE +FE LPD 
Sbjct: 114 ARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDP 173

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           ++   T  +LL+ Y Q     + E+  E+M + GF    LP+N ++N Y+   + +KV  
Sbjct: 174 LKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSI 233

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLY 254
           ++ E+ ++N + DV TYN+W+ +CA+  D +  E+ F ++ +   +  +W +Y+TL S++
Sbjct: 234 LIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMH 293

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           IK+   EKA  +LKE EKRT  + +  +  L++LY+++G K+EV R+W    + F  +++
Sbjct: 294 IKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHN 353

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  V+S+LV+LG+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR
Sbjct: 354 LGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNR 413

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLE 432
            V KG  P   TWE+L   YLK GQ  + L C +K  A+ S  KW P    + +     +
Sbjct: 414 FVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFK 473

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466
           E+ D + A+ L+  LR+      E Y SL+ TYA
Sbjct: 474 EKNDAESADRLMNVLRSRRCEENEEYKSLINTYA 507


>gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Glycine max]
          Length = 555

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/414 (36%), Positives = 254/414 (61%), Gaps = 6/414 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
           +A  + +W+ EG  + K+EL+R+V+ELRK KR+  ALEV +WM  + +  ++   D A+ 
Sbjct: 96  SAEVLNQWENEGRHLTKWELSRVVKELRKYKRFPRALEVYDWMNNRPERFRVSESDAAIQ 155

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K+RG+SSAE FF +L DK++   T  ALL+ YV ++   +AE+L + M   G++ 
Sbjct: 156 LDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYVI 215

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
             LP N M+ LY++  +  KV  +  E+ +KN   D+ TYN+WL++C SQ   E  E+ F
Sbjct: 216 HALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVF 275

Query: 233 LELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            ++++   I P+W ++STL S+YI+M   EKA   L+++E R   ++R+ +  LLSLY +
Sbjct: 276 EQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYGS 335

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G KDEV R+W    S+F ++ +  Y  +ISSLVKL + E AE +Y+EW S+  + DPR+
Sbjct: 336 VGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPRI 395

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N+L+  Y+ ++  + A SF+ ++   G  P   TWE+L+ G++   ++ + L C K+A 
Sbjct: 396 GNLLMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISEALSCLKEAF 455

Query: 412 ---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
              G  + W P    ++A     +EQ D++ AE L+  LR +     ++Y S++
Sbjct: 456 MVAGGSKSWRPKPSYLSAFLELCQEQNDMESAEVLIGLLRQSKFSKIKVYASII 509


>gi|22329290|ref|NP_171717.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806400|sp|Q8LPS6.2|PPR3_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g02150
 gi|2317908|gb|AAC24372.1| Unknown protein [Arabidopsis thaliana]
 gi|332189272|gb|AEE27393.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 524

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/413 (36%), Positives = 248/413 (60%), Gaps = 5/413 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
           AA  + +W++ G  + K+EL R+V+ELRK KR   ALEV +WM  + +  +L + D A+ 
Sbjct: 83  AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI K+RG+  AE FF  LP+  +      +LL++YV+ K   +AEAL+  M + G+  
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
            PLP+N M+ LY++  + DKV  M+ E+K K+   D+ +YN+WL++C S    E  E  +
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262

Query: 233 LELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            ++K    I P+W ++ST+ ++YIKM   EKA   L+++E R   +NR+ Y  LLSLY +
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K E+ R+W    S+   + +  Y  ++SSLV++G+ E AE +Y+EW  +  + DPR+
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           PN+L+ AY+  +QLE AE  ++ +V  G KP  +TWE+L  G+ +K  + + L C + A 
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442

Query: 412 GS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
            +     W P   +++  +   EE+ D+   E +L  LR +G +  + Y +L+
Sbjct: 443 SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495


>gi|255573349|ref|XP_002527601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533018|gb|EEF34782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 502

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 278/497 (55%), Gaps = 11/497 (2%)

Query: 10  LAAARVFST--KAAKITTLGLATEK---KGAGGRDTLGRRLLSLVYAKRSAAITMRKWKE 64
           +A+ R F+   +   +T   + T +   K     +TL  R+  L     S    +  W +
Sbjct: 1   MASTRFFTILKRTQSLTANAILTRRYYNKARTASNTLFARISPLGEPDISLVPVLDNWVQ 60

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           EG  +  +EL +I+R+LR  +RY  AL+V EWM  +        D+AV LDLI ++RGL 
Sbjct: 61  EGKKIRGFELQKIIRDLRCHRRYTQALQVSEWMNGKGQSGFSPADHAVQLDLIGRVRGLE 120

Query: 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           SAE++F+NL ++ R   T  ALL+ YV+     ++   M+KM E GF   PL YN ++ L
Sbjct: 121 SAESYFQNLVNQDRNDKTYGALLNCYVREGLVDKSLYHMQKMKELGFASSPLNYNDLMCL 180

Query: 185 YISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDP 242
           Y   GQL+KV  +L E+K+N  +PD+ +Y + +++CA+++D +  E+   E++ ++ I  
Sbjct: 181 YTRTGQLEKVTDVLSEMKENGITPDLFSYRICMSSCAARSDLKGVEEILEEMENQSHISI 240

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           DW++YST+ S+Y+K  L EKA   LK+ E++  R + + Y+ L+SL  ++G KDEV+R+W
Sbjct: 241 DWVTYSTVASIYVKASLKEKALIYLKKCEQKVNR-DALGYNHLISLNASLGIKDEVMRLW 299

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             + +   K  + +Y  ++ +LVKL E E+A+ +  EWES     D RVPN+LL  Y  +
Sbjct: 300 GLVKTKCKKQVNRDYITMLGALVKLEELEEADKLLQEWESSCQCYDFRVPNVLLIGYCQQ 359

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKWVP 419
             +E AE+    +V K   P   +W ++  GY+ K  MEK   C K+A+      + W P
Sbjct: 360 GLIEKAEAMLKDIVKKQKNPTPNSWAIIAAGYVNKQNMEKAFNCMKEALTVQAENKGWRP 419

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
              LI++  + L E GD++  E  +  L        EIY++L++ Y + GK    ++E M
Sbjct: 420 KANLISSILSWLGENGDVEDVEAFVNLLETKVPKDREIYHTLIKAYIRGGKQVDGVLENM 479

Query: 480 QKDNVQMDAETQKVLKI 496
             + +  D ET+ +L +
Sbjct: 480 TANKIDEDEETKTILSL 496


>gi|20453085|gb|AAM19786.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
 gi|29028736|gb|AAO64747.1| At1g02150/T7I23.8 [Arabidopsis thaliana]
          Length = 524

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 248/413 (60%), Gaps = 5/413 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
           AA  + +W++ G  + K+EL R+V+ELRK KR   A+EV +WM  + +  +L + D A+ 
Sbjct: 83  AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQAIEVYDWMNNRGERFRLSASDAAIQ 142

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI K+RG+  AE FF  LP+  +      +LL++YV+ K   +AEAL+  M + G+  
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
            PLP+N M+ LY++  + DKV  M+ E+K K+   D+ +YN+WL++C S    E  E  +
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262

Query: 233 LELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            ++K    I P+W ++ST+ ++YIKM   EKA   L+++E R   +NR+ Y  LLSLY +
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K E+ R+W    S+   + +  Y  ++SSLV++G+ E AE +Y+EW  +  + DPR+
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           PN+L+ AY+  +QLE AE  ++ +V  G KP  +TWE+L  G+ +K  + + L C + A 
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442

Query: 412 GS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
            +     W P   +++  +   EE+ D+   E +L  LR +G +  + Y +L+
Sbjct: 443 SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495


>gi|125549215|gb|EAY95037.1| hypothetical protein OsI_16851 [Oryza sativa Indica Group]
          Length = 511

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 262/453 (57%), Gaps = 7/453 (1%)

Query: 19  KAAKITTLG-LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           + AK+ + G L  E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI
Sbjct: 55  QVAKVHSYGALDYERRAALRWSSLYRRI-AVGHGGRPVGRTLGAWDEGERRLDKWELCRI 113

Query: 78  VRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            RELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+S AE +FE LPD 
Sbjct: 114 ARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDP 173

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           ++   T  +LL+ Y Q     + E+  E+M + GF    LP+N ++N Y+   + +KV  
Sbjct: 174 LKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSI 233

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLY 254
           ++ E+ ++N + DV TYN+W+ +CA+  D +  E+ F ++ +   +  +W +Y+TL S++
Sbjct: 234 LIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMH 293

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           IK+   EKA  +LKE EKRT  + +  +  L++LY+++G K+EV R+W    + F  +++
Sbjct: 294 IKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHN 353

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  V+S+LV+LG+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR
Sbjct: 354 LGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNR 413

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLE 432
            V KG  P   TWE+L   YLK GQ  + L C +K  A+ S  KW P    + +     +
Sbjct: 414 FVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFK 473

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
           E+ D + A+ L+  LR+      E Y SL+ TY
Sbjct: 474 EKNDAESADRLMNVLRSRRCEENEEYKSLINTY 506


>gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/430 (36%), Positives = 267/430 (62%), Gaps = 7/430 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           +++ RR+  +   +  AA  + + +++G  + K+EL R+V+ELRK KR+K ALEV +WM 
Sbjct: 69  NSVYRRISLMEKPELGAATVLNEMEKDGKKLTKWELCRVVKELRKYKRHKQALEVYDWMN 128

Query: 99  LQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
            + +  +L + D A+ LDL++K+RG+SSAE++F  L D ++      ALL+SYV+ +   
Sbjct: 129 NREERFRLSASDAAIQLDLVAKVRGVSSAEDYFMRLSDNVKDRRVYGALLNSYVKARMRE 188

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL 216
           +AE+L+EKM +  +    LP+N M+ LY++  + DKV  M+ E+  KN   D+ +YN+WL
Sbjct: 189 KAESLIEKMRKKDYTTHALPFNVMMTLYMNLKEYDKVDMMISEMMAKNIRLDIYSYNIWL 248

Query: 217 AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           ++  SQ   E  E+ + ++K  + I+P+W ++ST+ ++YIKM   EKA   L+ +E R  
Sbjct: 249 SSRGSQGSIERMEEVYEQMKLDSTINPNWTTFSTMATMYIKMGQLEKAEDCLRRVESRIT 308

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
            ++R+ Y  LLSLY N+G K+E+ R+W    S+FA + +  Y  +ISSLV++ + E AE 
Sbjct: 309 GRDRIPYHYLLSLYGNVGNKEEIYRVWNIYKSIFATIPNLGYHAIISSLVRMDDIEGAEK 368

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           IY+EW  +  + DPR+ N+L+  Y+    L+ AESF++ ++  G KP  +TWE+L  G+ 
Sbjct: 369 IYEEWLPVKSSYDPRIGNLLMGWYVRGGNLDKAESFFDHMMEVGGKPNSSTWEILADGHT 428

Query: 396 KKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
           ++ ++ + L CFK+A    GS + W P   +I++ +   EE+ D+     L   L  +G+
Sbjct: 429 REKRISEALSCFKEAFLAQGS-KSWKPKPVIISSFFKLCEEEADMASTGVLEDLLAQSGY 487

Query: 453 VSTEIYNSLL 462
           +  + Y SL+
Sbjct: 488 LEDKTYASLI 497


>gi|293332912|ref|NP_001168310.1| hypothetical protein [Zea mays]
 gi|223947377|gb|ACN27772.1| unknown [Zea mays]
 gi|414586053|tpg|DAA36624.1| TPA: hypothetical protein ZEAMMB73_688721 [Zea mays]
          Length = 513

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 164/457 (35%), Positives = 260/457 (56%), Gaps = 7/457 (1%)

Query: 19  KAAKITTLGLAT-EKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           + AK+ + G    E++      TL RR+ ++ +  R    T+  W E    + K+EL RI
Sbjct: 57  RVAKVHSYGTVDYERRSPLRWGTLYRRI-AVGHGGRPVGRTLGAWDEGERRLDKWELCRI 115

Query: 78  VRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            +ELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+  AE +F+ LPD 
Sbjct: 116 AKELRKFRRFNLALQVYDWMTERRDRFPLSSSDMAIQLDLIAKVRGVPHAEKYFDELPDA 175

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           M+   T  +LL+ Y Q     + E   E+M + GF    LP N ++N Y+ +G+ D+V  
Sbjct: 176 MKDKRTYGSLLNVYAQAMMKEKTEETFEQMRKKGFASDTLPCNVLMNFYVDSGEPDEVLA 235

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLY 254
           ++ E+K +N S DV TYN+W+ +CA++ D E  E+ F ++     +  +W +Y+TL S+Y
Sbjct: 236 IIDEMKERNVSFDVCTYNIWIKSCAAKQDAEEMEQVFSQMIADESVVANWTTYTTLASMY 295

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           +K+   EKA   LK+ EKRT  + +  +  L++LY+++G K+EV RIW    + F  +++
Sbjct: 296 LKLGNSEKAEECLKDAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRIWNWYKATFPMIHN 355

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  ++S+L+++G+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR
Sbjct: 356 LGYQELLSALIRIGDIEGAELLYEEWASKSYSFDPKTMNILLAWYAKEGLITKAEQTVNR 415

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLE 432
            V KG  P   TWE+L   Y+   ++ + L C +K  A+ S  KW P    +       +
Sbjct: 416 FVEKGGNPKPNTWEILATAYMNDDKISEALSCMEKATAVKSASKWKPRPTNVETLLASFK 475

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
           E+ D +GA+ L+  L + G    E Y SL+ TYA AG
Sbjct: 476 EKNDAEGADRLVSVLTSRGCAEDEEYKSLIDTYAFAG 512


>gi|356518447|ref|XP_003527890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 496

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 264/456 (57%), Gaps = 6/456 (1%)

Query: 50  YAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           ++K+S    ++ W ++G+ V  ++L  I R L K KRY HALEV EW++ Q +  ++  D
Sbjct: 41  FSKQSPLPALQNWVDQGNDVSPFQLRSIARTLVKSKRYHHALEVFEWIKNQKNFHMIPAD 100

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC 169
           +A+ L+LI +  GL  AE +F NLPD       C  LL  YV+++ +++AE  M K+ E 
Sbjct: 101 HAMKLELIIENHGLMEAEEYFMNLPDSAAKKAACLILLRGYVRDRDTSKAETFMLKLYEL 160

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETA 228
           G +  P P+N M+ LY+   +  KVP ++Q++K+N  P +V++YNLW+ AC+ +     A
Sbjct: 161 GLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYVVA 220

Query: 229 --EKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             E  F + L    ++  W S +TL + Y K    +KA   LK+ EK+    NR+ +  L
Sbjct: 221 AVETVFRQMLNDRNVEVGWGSLATLANAYKKAGQSKKAILVLKDAEKKLSTCNRLGHFFL 280

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++LY ++  K+ VLR+W+   ++  +++ A Y C+++ LVKLG+  +A+ I+ EWES   
Sbjct: 281 ITLYASLKDKEGVLRLWEASKAVRGRISCANYICILTCLVKLGDIVQAKRIFLEWESNCQ 340

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D RV N+LL AY+    +E AES +   + KG  P Y T E+L  GY+   +M++ + 
Sbjct: 341 KYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTLEILMEGYVNWQKMDEAII 400

Query: 406 CFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
             K+A+  ++   W P H ++ A    LE+ G+++ A+  +  + N G VS  +Y  LLR
Sbjct: 401 TMKRALAMMKDCHWRPPHGIVLAIAEYLEKDGNLEYADKYITDIHNLGLVSLSLYKVLLR 460

Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
            +  A K P  I++ M +D V++D ET  +LK  +E
Sbjct: 461 MHLSANKPPFHILKMMDEDKVEIDNETLSILKAFTE 496


>gi|225461407|ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial [Vitis vinifera]
          Length = 504

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 261/449 (58%), Gaps = 16/449 (3%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + +W EEG  V   EL+RI+R+LR  KRY  ALEV EWM  +          AV LDLI
Sbjct: 56  VLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLI 115

Query: 118 SKIRGLSSAENFFENLP-----DKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
            ++RGL SAEN+F N+      DKM G     ALL+ YV+ +   ++ + ++KM E GF 
Sbjct: 116 GQVRGLESAENYFNNMSAEEKIDKMYG-----ALLNCYVRERVIDKSLSHLQKMKELGFA 170

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 231
             PLPYN ++ LYI+  QL+K+P +L E+++N  SPD  +Y L + +  +++D  + EK 
Sbjct: 171 STPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKI 230

Query: 232 FLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             E++ K+ I  DW++YS + + YIK  L EKA   LK+ E +   K+ + Y+ L+SLY 
Sbjct: 231 LEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETK-LHKDPLGYNHLISLYA 289

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           ++G K E++R+W++  +   K+ + +Y  ++ SLVKLGE E  E +  EWES     D R
Sbjct: 290 SLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFR 349

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           VPN LL  +  +  +E AES    +V +G  P   +W ++  GY++K  MEK  EC K+A
Sbjct: 350 VPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEA 409

Query: 411 IGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
           I  +   + W P  ++I++  + L +  D++  E  +  L+    +  E+Y++ +R   +
Sbjct: 410 IAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDREMYHAQIRASIR 469

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLKI 496
           AGK    I++ M+ D +  D ET+K+L +
Sbjct: 470 AGKEVDGILDSMKADKIDEDEETRKILSL 498


>gi|302143027|emb|CBI20322.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 261/449 (58%), Gaps = 16/449 (3%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + +W EEG  V   EL+RI+R+LR  KRY  ALEV EWM  +          AV LDLI
Sbjct: 56  VLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLI 115

Query: 118 SKIRGLSSAENFFENLP-----DKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
            ++RGL SAEN+F N+      DKM G     ALL+ YV+ +   ++ + ++KM E GF 
Sbjct: 116 GQVRGLESAENYFNNMSAEEKIDKMYG-----ALLNCYVRERVIDKSLSHLQKMKELGFA 170

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 231
             PLPYN ++ LYI+  QL+K+P +L E+++N  SPD  +Y L + +  +++D  + EK 
Sbjct: 171 STPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKI 230

Query: 232 FLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             E++ K+ I  DW++YS + + YIK  L EKA   LK+ E +   K+ + Y+ L+SLY 
Sbjct: 231 LEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETK-LHKDPLGYNHLISLYA 289

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           ++G K E++R+W++  +   K+ + +Y  ++ SLVKLGE E  E +  EWES     D R
Sbjct: 290 SLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFR 349

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           VPN LL  +  +  +E AES    +V +G  P   +W ++  GY++K  MEK  EC K+A
Sbjct: 350 VPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEA 409

Query: 411 IGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
           I  +   + W P  ++I++  + L +  D++  E  +  L+    +  E+Y++ +R   +
Sbjct: 410 IAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDREMYHAQIRASIR 469

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLKI 496
           AGK    I++ M+ D +  D ET+K+L +
Sbjct: 470 AGKEVDGILDSMKADKIDEDEETRKILSL 498


>gi|356510143|ref|XP_003523799.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Glycine max]
          Length = 530

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 269/487 (55%), Gaps = 9/487 (1%)

Query: 25  TLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKL 84
           TL  + + + +     L R+L S    K+S    ++ W +EG+ V   EL RI R L K 
Sbjct: 44  TLCSSVDSRASAFHVPLARKLKS---RKQSPLPALKNWVDEGNDVSHSELRRIARTLVKS 100

Query: 85  KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS 144
           K Y HALEV +W+E Q +  ++  DYA+ L+LI +   L  AE +F NLPD       C 
Sbjct: 101 KCYHHALEVVKWIENQKNFHMIPADYAMKLELIIENYDLMEAEEYFMNLPDSAAKKAACL 160

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            LL  Y++ + + +AE  M K+ E G +  P P+N M+ LY++  +  KVP ++Q++K+N
Sbjct: 161 TLLRGYIRVRDTNKAETFMVKLYELGLVLSPHPFNEMMKLYLATCEYRKVPLVMQQMKRN 220

Query: 205 TSP-DVVTYNLWLAACASQNDKETA--EKAFLELKKTK-IDPDWISYSTLTSLYIKMELP 260
             P +V++YNLW+ AC  +     A  E  F +++  + ++  W S +TL + Y K    
Sbjct: 221 KVPCNVLSYNLWMNACTEEEGYGVAAVETVFRQMQNDRNVEVGWSSLATLANAYKKAGQS 280

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA   LK+ E++    NR+ Y  L++LY ++  K+ VLR+W+   ++  +++ A Y C+
Sbjct: 281 KKAILVLKDAERKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYICI 340

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  LVKLG+  +A+ I+ EWES     D RV N+LL AY     +E AES +   + KG 
Sbjct: 341 LICLVKLGDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYARNGSMEEAESLHLHTLQKGG 400

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDID 438
            P Y T E+L  GY+   +M++ +   K+A+  ++   W P H L+ A    LE+ G++ 
Sbjct: 401 CPNYKTLEILMEGYVNWQKMDEAIITMKRALAMMKDCHWRPPHGLVLAIAEYLEKDGNLK 460

Query: 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
            A   +  LRN G  S  +Y  LLR +  A K P  I++ M +D ++MD ET  +LK  +
Sbjct: 461 YANKYITDLRNFGLFSLSLYKILLRMHLSANKPPFHILKMMDEDKIEMDNETLSILKAFT 520

Query: 499 EMPVSEV 505
               +EV
Sbjct: 521 GCVQAEV 527


>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 490

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 250/435 (57%), Gaps = 8/435 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V+K+E+   +++LR    Y  AL++ E M  +   K VS D A+HLDL++K RG+ +AE 
Sbjct: 53  VYKWEVGDTLKKLRSRGLYYPALKLSEAMSKRGMNKTVS-DQAIHLDLVAKTRGIPAAEI 111

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           FF +LP+  +   T  ALL+ Y     + EAEALMEKM E       + YN ++ LY   
Sbjct: 112 FFIDLPETSKNHLTYGALLNCYCNQLMTEEAEALMEKMKELNLGLSSMSYNSLMTLYTKI 171

Query: 189 GQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +++P ++QE+K ++  PD  TYN+W+ A A+ ND   AE+   E+K+  ++  DW +
Sbjct: 172 GQPERIPGIIQEMKSDSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS L S+Y+  +L EKA  TLKE+EKR   ++  A+  L++LY  +G   E+ RIW+ + 
Sbjct: 232 YSNLASIYVDAQLFEKAEKTLKELEKRNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLR 291

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F K ++  Y  +I  LV L +   AE  + EWES     D RV N+L+ AY  +  LE
Sbjct: 292 LAFPKTSNISYLNMIQVLVNLKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLE 351

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            AE    R + +G KP   TWE+ +  Y + G ++  +EC   AI    G  +KW+P   
Sbjct: 352 KAEELKERAIGRGAKPNAKTWEIFSDYYFENGDIKLSVECLANAISKGRGDGQKWIPSPE 411

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
           ++ +     E+Q D+DGAE  +  L+ A   V   ++ SL+RTYA AG+   ++  R++ 
Sbjct: 412 VVASFMAHFEQQKDVDGAEGFIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRRRLKM 471

Query: 482 DNVQMDAETQKVLKI 496
           +NV++    QK+L++
Sbjct: 472 ENVEVSEAGQKLLEM 486


>gi|326493098|dbj|BAJ85010.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326510377|dbj|BAJ87405.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/443 (36%), Positives = 251/443 (56%), Gaps = 6/443 (1%)

Query: 31  EKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHA 90
           E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI RELRK +R+  A
Sbjct: 60  ERRPALRWSSLYRRV-AVGHGGRPVGRTLADWDEGERRLDKWELCRIARELRKFRRFNLA 118

Query: 91  LEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           LEV +WM  + D   L S D A+ LDLI+K+RG+  AE +FE LPD ++   T  +LL+ 
Sbjct: 119 LEVYDWMTDRRDRFSLSSSDMAIQLDLIAKVRGVPDAEEYFEKLPDPLKDKRTYGSLLNV 178

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPD 208
           Y Q +   + E   E+M + GF    LP+N ++N Y+   + +KV  +  E+K +N S D
Sbjct: 179 YAQARMKEKTEYTFEQMRKKGFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFD 238

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTL 267
           V TYN+W+  CA+  D +  E+   ++   + +  +W +Y+TL S++IK+E  EKA   L
Sbjct: 239 VCTYNIWIKCCAAMKDADAMERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECL 298

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           KE EKR   +++  +  L++LY+++  K+EV RIW    + F  +++  Y  V+S+LV+L
Sbjct: 299 KEAEKRATGRDKKCFHFLITLYSHLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRL 358

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G+ E AE +Y+EW S S + DP+  NILLA Y     +  A+   NR V KG  P   TW
Sbjct: 359 GDIEGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTW 418

Query: 388 ELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           E+L   YLK  Q+ + L C +K  A+ S  KW P    +       +E+ D +  + L+ 
Sbjct: 419 EILATAYLKDNQLSEALSCLEKATAVKSASKWRPRPTNVETLLAYFKEKNDTESVDRLMS 478

Query: 446 TLRNAGHVSTEIYNSLLRTYAKA 468
            LR+ G    E Y SL+ TYA A
Sbjct: 479 VLRSRGCAENEEYKSLIDTYALA 501


>gi|297603118|ref|NP_001053460.2| Os04g0544400 [Oryza sativa Japonica Group]
 gi|255675659|dbj|BAF15374.2| Os04g0544400 [Oryza sativa Japonica Group]
          Length = 571

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 255/437 (58%), Gaps = 7/437 (1%)

Query: 19  KAAKITTLG-LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           + AK+ + G L  E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI
Sbjct: 55  QVAKVHSYGALDYERRAALRWSSLYRRI-AVGHGGRPVGRTLGAWDEGERRLDKWELCRI 113

Query: 78  VRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            RELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+S AE +FE LPD 
Sbjct: 114 ARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDP 173

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           ++   T  +LL+ Y Q     + E+  E+M + GF    LP+N ++N Y+   + +KV  
Sbjct: 174 LKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSI 233

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLY 254
           ++ E+ ++N + DV TYN+W+ +CA+  D +  E+ F ++ +   +  +W +Y+TL S++
Sbjct: 234 LIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMH 293

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           IK+   EKA  +LKE EKRT  + +  +  L++LY+++G K+EV R+W    + F  +++
Sbjct: 294 IKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHN 353

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  V+S+LV+LG+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR
Sbjct: 354 LGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNR 413

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLE 432
            V KG  P   TWE+L   YLK GQ  + L C +K  A+ S  KW P    + +     +
Sbjct: 414 FVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFK 473

Query: 433 EQGDIDGAEHLLVTLRN 449
           E+ D + A+ L+  LR+
Sbjct: 474 EKNDAESADRLMNVLRS 490


>gi|326498623|dbj|BAK02297.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 250/443 (56%), Gaps = 6/443 (1%)

Query: 31  EKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHA 90
           E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI RELRK +R+  A
Sbjct: 60  ERRPALRWSSLYRRV-AVGHGGRPVGRTLADWDEGERRLDKWELCRIARELRKFRRFNLA 118

Query: 91  LEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           LEV +WM  + D   L S D A+ LDLI+K+RG+   E +FE LPD ++   T  +LL+ 
Sbjct: 119 LEVYDWMTDRRDRFSLSSSDMAIQLDLIAKVRGVPDTEEYFEKLPDPLKDKRTYGSLLNV 178

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPD 208
           Y Q +   + E   E+M + GF    LP+N ++N Y+   + +KV  +  E+K +N S D
Sbjct: 179 YAQARMKEKTEYTFEQMRKKGFATDTLPFNVLMNFYVDVAEPEKVSTVTDEMKQRNISFD 238

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTL 267
           V TYN+W+  CA+  D +  E+   ++   + +  +W +Y+TL S++IK+E  EKA   L
Sbjct: 239 VCTYNIWIKCCAAMKDADAMERVLNQMTADESVVANWTTYTTLASMHIKLENFEKAEECL 298

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           KE EKR   +++  +  L++LY+++  K+EV RIW    + F  +++  Y  V+S+LV+L
Sbjct: 299 KEAEKRATGRDKKCFHFLITLYSHLQKKEEVYRIWNWYKATFKTIHNLGYQEVLSALVRL 358

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G+ E AE +Y+EW S S + DP+  NILLA Y     +  A+   NR V KG  P   TW
Sbjct: 359 GDIEGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTW 418

Query: 388 ELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           E+L   YLK  Q+ + L C +K  A+ S  KW P    +       +E+ D +  + L+ 
Sbjct: 419 EILATAYLKDNQLSEALSCLEKATAVKSASKWRPRPTNVETLLAYFKEKNDTESVDRLMS 478

Query: 446 TLRNAGHVSTEIYNSLLRTYAKA 468
            LR+ G    E Y SL+ TYA A
Sbjct: 479 VLRSRGCAENEEYKSLIDTYALA 501


>gi|357165075|ref|XP_003580262.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g02150-like [Brachypodium distachyon]
          Length = 513

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 246/431 (57%), Gaps = 5/431 (1%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD- 102
           R +++ + +R    T+  W E    + K+EL R+ RELRK +R+  AL+V +WM  + D 
Sbjct: 82  RRIAVGHGRRPVGRTLADWDEGERRLDKWELCRVARELRKFRRFNLALQVYDWMTERRDR 141

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL 162
             L S D A+ LDL++K+RG+  AE +FE+LPD ++   T  +LL+ Y Q +   + E  
Sbjct: 142 FSLSSSDMAIQLDLVAKVRGVPHAEEYFESLPDPLKDKRTYGSLLNVYAQARMKEKTEDT 201

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACAS 221
            E+M + G+    LP+N ++N Y+   +  KV  +  E+K +N S DV TYN+W+ + A+
Sbjct: 202 FEQMRKKGYASDTLPFNVLMNFYVDVEEPQKVSAVTDEMKERNVSFDVCTYNIWIKSFAA 261

Query: 222 QNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
             D +  ++ F ++     +  +W +Y+TL S++IK+   EKA   LKE EKRT  +++ 
Sbjct: 262 MKDADGMDRVFNQMIADESVVANWTTYTTLASMHIKLGNFEKAEVCLKEAEKRTTGRDKK 321

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            +  L++LY+ +  K+EV RIW    + F+ +++  Y  V+S+LV+LG+ E AE +Y+EW
Sbjct: 322 CFHFLITLYSYLQKKEEVYRIWNWYKATFSTIHNLGYQEVLSALVRLGDIEGAELLYEEW 381

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
            S S + DP+  NILLA Y     +  AE   NR V KG  P   TWE+L   YLK  Q+
Sbjct: 382 ASKSSSFDPKTMNILLAWYSREGFVVKAEQTLNRFVEKGGNPKPNTWEILASAYLKDNQL 441

Query: 401 EKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
            + L C +K  A+ S  +W P    + +     +E  D D A+ L+  L + G    E Y
Sbjct: 442 SEALSCMEKAAAVKSASRWRPRPSNVESLLAYFKENNDTDSADRLMGVLTSRGCAENEEY 501

Query: 459 NSLLRTYAKAG 469
            SL+ TYA AG
Sbjct: 502 KSLINTYALAG 512


>gi|302142021|emb|CBI19224.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 230/379 (60%), Gaps = 2/379 (0%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           RD L  R+L LV+ +RSA   ++ W ++GH V   +L  + R+L K KR+KHALE+  WM
Sbjct: 37  RDDLTSRMLKLVFPRRSATAVLQNWIDQGHKVTASDLRNVSRQLLKSKRHKHALEILAWM 96

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
           E Q   ++ + D+A+ L+LI KI+ L+ AE +FE+LP+       C  LLH+YV+ +   
Sbjct: 97  EAQNRFQMSAADHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIE 156

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWL 216
           +AEALM K+++ G    P P+N M+ LY++  Q ++VP ++ ++K+N  P +V++YNLW+
Sbjct: 157 KAEALMLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWM 216

Query: 217 AACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +AC+  +   +AE  + ++   K ++  W + STL ++Y+K  L +KA   LK  EK+  
Sbjct: 217 SACSEVSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLS 276

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             NR+ Y  L+++Y ++  K+EVLR+W+    +  ++    Y C++  LVKLG+  +AE 
Sbjct: 277 AHNRLGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAER 336

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I+ EWES     D RV N+LL AY+    ++ AES +   + +G  P Y TWE+L  G++
Sbjct: 337 IFREWESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEILMEGWM 396

Query: 396 KKGQMEKVLECFKKAIGSV 414
           K   M+K +   KK    +
Sbjct: 397 KSQNMDKAINAMKKGFSII 415


>gi|218195308|gb|EEC77735.1| hypothetical protein OsI_16848 [Oryza sativa Indica Group]
          Length = 1300

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 255/441 (57%), Gaps = 11/441 (2%)

Query: 19  KAAKITTLG-LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           + AK+ + G L  E++ A    +L RR+ ++ +  R    T+  W E    + K+EL RI
Sbjct: 55  QVAKVHSYGALDYERRAALRWSSLYRRI-AVGHGGRPVGRTLGAWDEGERRLDKWELCRI 113

Query: 78  VRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            RELRK +R+  AL+V +WM  + D   L S D A+ LDLI+K+RG+S AE +FE LPD 
Sbjct: 114 ARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDP 173

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           ++   T  +LL+ Y Q     + E+  E+M + GF    LP+N ++N Y+   + +KV  
Sbjct: 174 LKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSI 233

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLY 254
           ++ E+ ++N + DV TYN+W+ +CA+  D +  E+ F ++ +   +  +W +Y+TL S++
Sbjct: 234 LIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMH 293

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           IK+   EKA  +LKE EKRT  + +  +  L++LY+++G K+EV R+W    + F  +++
Sbjct: 294 IKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHN 353

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  V+S+LV+LG+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR
Sbjct: 354 LGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNR 413

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLE 432
            V KG  P   TWE+L   YLK GQ  + L C +K  A+ S  KW P    + +     +
Sbjct: 414 FVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFK 473

Query: 433 EQGDIDGAEHLLVTLRNAGHV 453
           E+ D + A+ L+    N G V
Sbjct: 474 EKNDAESADRLM----NPGFV 490


>gi|224084592|ref|XP_002307350.1| predicted protein [Populus trichocarpa]
 gi|222856799|gb|EEE94346.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 256/461 (55%), Gaps = 6/461 (1%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           RL + +   +S +  ++ W   G+ V   +LN I ++L K KRYK ALE+ +WME Q + 
Sbjct: 51  RLETEILRLKSPSRVLQDWINNGNKVKLSQLNLISKQLLKSKRYKQALEILQWMENQNNF 110

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
           ++  G +A+ ++LI K+ GL+ A  +FE +P           LLH YV+ +  ++AE+ M
Sbjct: 111 RITPGHHALMMELIVKVNGLNKAGEYFERIPGSGSKKAASLPLLHGYVKERDISKAESFM 170

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQ 222
            K+S  G L  P PYN M+ LY++  Q +KVP ++ E+K+N    +V++YNLW+ A    
Sbjct: 171 IKLSSSGLLVTPHPYNEMMKLYMALSQYEKVPLVIAEMKRNKLCRNVLSYNLWMGAFGEV 230

Query: 223 NDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
            +   AE  + E+     +   W + ++L ++YIK    +KA   LK+ E +     R+ 
Sbjct: 231 FEVAKAEMVYKEMVSDENVGVGWSTLASLANVYIKAGFVDKALLVLKDAEMKLSTNGRLG 290

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y  L++LY+++  K+ VLR+W+   ++  ++  A+Y CVIS LVK+G+   AE ++ EWE
Sbjct: 291 YFFLITLYSSLKNKEGVLRLWEASKAVGGRIPCADYMCVISCLVKVGDLVAAEQVFAEWE 350

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +     D RV N+LL AY+    +  AESF+   V +G  P Y TWE+L  G++K  +M+
Sbjct: 351 TNCFKYDIRVSNVLLGAYVRNGLMGKAESFHLHTVERGGCPNYKTWEILMEGWVKSQKMD 410

Query: 402 KVLECFKKAIGSVR----KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           K ++  KK    ++     W P H ++ A     E+ G+ + A H +  +   G  +  +
Sbjct: 411 KAIDAMKKGFSVLKVERCDWRPSHSILMAIAEHFEKHGNFEDANHYIKAVHGLGVATLPL 470

Query: 458 YNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
           Y   LR Y  A +    I++ M+KD +++D ET  ++ + S
Sbjct: 471 YKLFLRMYLNAQRPAWDILKMMEKDRIELDDETSALVALNS 511


>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 491

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 249/438 (56%), Gaps = 8/438 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V K+E+   +++LR    Y  AL++ E ME +   K VS D A+HLDL++K RG+++ EN
Sbjct: 53  VFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVS-DQAIHLDLVAKARGITAGEN 111

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +   T  +LL+ Y +   + +AE L+ KM E       + YN ++ LY   
Sbjct: 112 YFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKT 171

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +KVP M+QELK +N  PD  TYN+W+ A A+ ND    E+   E+ +  ++ PDW +
Sbjct: 172 GQTEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS + S+Y+   L +KA   L+E+E +  +++  AY  L++LY  +G   EV RIW+ + 
Sbjct: 232 YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLR 291

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
               K ++  Y  +I  LVKL +   AE ++ EW++   T D R+ N+L+ AY     +E
Sbjct: 292 LAMPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIE 351

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            A+    +   +G K    TWE+    Y+K G M   LEC  KA+    G   KW+P   
Sbjct: 352 KAKELKEKAPRRGGKANAKTWEIFMDYYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQE 411

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
            +    +  E++ D++GAE+LL  L+N   ++  EI+ SL+RTYA AGK    +  R++ 
Sbjct: 412 TVRTLMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKM 471

Query: 482 DNVQMDAETQKVLKITSE 499
           +NV+++  T+K+L   S+
Sbjct: 472 ENVEVNEVTKKLLDEVSQ 489


>gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Cucumis sativus]
 gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g60770-like [Cucumis sativus]
          Length = 489

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 260/461 (56%), Gaps = 6/461 (1%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           RL     +++S  + + K+ +    V K+E+   +R+LR  K Y  AL++ E M  +   
Sbjct: 30  RLFKDGGSEKSVRLQLNKFIKSHKRVFKWEVGDTLRKLRDRKLYYPALKLSEIMAKRGMN 89

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
           K VS D A+HLDL++K RG+ +AEN+F +LP+  +   + S+LL+ Y +   + +AEAL 
Sbjct: 90  KTVS-DQAIHLDLVAKARGIDAAENYFVSLPESSKNHLSYSSLLNCYCKELLTEKAEALF 148

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQ 222
           EK+ E      P+PYN ++ LY   G+ DKV  ++QE+K  N + D  TY +W+ A A+ 
Sbjct: 149 EKIKELNLPVTPVPYNSLMTLYSKIGRPDKVCTIIQEMKAANVTFDPYTYIVWMRALAAL 208

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           ND    E+   E+K+  +  DW +YS L S+Y+   + EKAA  LK++EK   R++ + +
Sbjct: 209 NDISGVERVIDEMKRDGVKGDWTTYSNLASIYVNANMFEKAAKALKDLEKINTRRDLIGF 268

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
             L++LY  +G   EV R+W+ +   F +  +  Y  +I +L KL +   AE  + EWES
Sbjct: 269 QFLITLYGQIGDLTEVYRVWRSLRLAFPRTANISYLNMIQTLTKLKDLPGAEKCFKEWES 328

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            S T D R+PN L+ AY     LE A +   R + +G +P   TWE     YLK G  + 
Sbjct: 329 GSPTYDIRIPNALIGAYTKGGLLEKAMALKERALRRGARPNAKTWEFFLNYYLKNGDFKL 388

Query: 403 VLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYN 459
             +C  KAI  G   KW+P   +I +  +  E++ D+DGAE  L +  +    + +E++ 
Sbjct: 389 AGDCVAKAIGKGDRGKWIPSPEIIKSFMSHFEQEKDVDGAESFLEIVKKTVDSLESEVFE 448

Query: 460 SLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL-KITSE 499
           SL+RTY+ AG+    +  R++ +NV++    +K+L KI+ E
Sbjct: 449 SLIRTYSAAGRTSSSMSRRLKMENVEVSEACKKLLNKISIE 489


>gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Glycine max]
          Length = 490

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 249/437 (56%), Gaps = 8/437 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V+K+E+   +++LR  K Y+ AL++ E M  +  IK VS D+A+HLDL++K RG+++AEN
Sbjct: 53  VYKWEVGDTLKKLRDRKLYQPALKLSETMAKRNMIKTVS-DHAIHLDLLAKARGITAAEN 111

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +      ALL+ Y +   + ++E LMEKM E       +PYN ++ LY   
Sbjct: 112 YFVSLPEPSKNHLCYGALLNCYCKELMTEKSEGLMEKMKELSLPLSSMPYNSLMTLYTKV 171

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +K+P ++QE+K  N   D  TYN+W+ A A+ ND    E+   E+K+  ++  DW +
Sbjct: 172 GQPEKIPSLIQEMKASNVMLDSYTYNVWMRALAAVNDISGVERVHDEMKRGGQVTGDWTT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS L S+++   L +KA   LKE+EKR   K+  AY  L++LY   G   EV R+W+ + 
Sbjct: 232 YSNLASIFVDAGLFDKAEVALKELEKRNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLR 291

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F K  +  Y  +I  LV L +   AE  + EWE    T D RV N+L+ AY+  + LE
Sbjct: 292 LAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLE 351

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            AE    R   +G KP   T E+    YL KG  +  ++   +AI    G+  KWVP  R
Sbjct: 352 KAEELKERARRRGAKPNAKTLEIFMDYYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSR 411

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIVERMQK 481
           +I+      E++ D+DGAE  L  L+ +      E++ SL+RTYA AG++   +  R++ 
Sbjct: 412 IISIMMRHFEQEKDVDGAEEFLEILKKSVESPGVEVFESLIRTYAAAGRISSAMQRRLKM 471

Query: 482 DNVQMDAETQKVLKITS 498
           +NV++   TQK+L+  S
Sbjct: 472 ENVEVSEGTQKLLEAIS 488


>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 253/446 (56%), Gaps = 5/446 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    +  W  +G+ +   EL RI+R+LRK  R+  AL++ EWM  +        +YAVH
Sbjct: 36  SVVPVLDDWVFKGNKLRVAELQRIIRDLRKRSRFSQALQISEWMHNKGVCIFSPTEYAVH 95

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI K+ G SSAE +F+ L D+ +   T  ALL+ YV+ +++ +A + ++KM + GF  
Sbjct: 96  LDLIGKVHGFSSAETYFDALKDQHKTNKTYGALLNCYVRQRQTDKALSHLQKMKDLGFAS 155

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAF 232
            PL YN ++ LY + GQ +KVP +L+E+K+N   PD  +Y + + +   ++D    E+  
Sbjct: 156 SPLTYNDIMCLYTNIGQHEKVPDVLREMKQNQVLPDNFSYRICINSYGVRSDFGGVERVL 215

Query: 233 LELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            E++ +  I  DW +YS   + YIK  L   A   L++ E+R   K+   Y+ L+SLY  
Sbjct: 216 KEMETQPNIVMDWNTYSIAANFYIKAGLTRDAVCALRKSEERLDNKDGQGYNHLISLYAQ 275

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K+EV+RIW    +   +  + ++T ++ SLVKLGE ++AE I  EWES     D  +
Sbjct: 276 LGLKNEVMRIWDLEKNACKRCINRDFTTLLESLVKLGELDEAEKILKEWESSDNCYDFGI 335

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           P+I++  Y  +   E A +    L  K        W ++  GY+ KG+MEK  +CFK A+
Sbjct: 336 PSIVIIGYSQKGLHEKALAMLEELQNKEKVTTPNCWSIVAGGYIHKGEMEKAFKCFKTAL 395

Query: 412 G---SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
                 + W P+ ++I      + + G ++ AE L+  LRNA  V+ ++Y++L++TY + 
Sbjct: 396 SLYVENKGWKPNAKVIAELLRWIGDNGSVEDAEVLVSLLRNAVPVNRQMYHTLIKTYIRG 455

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVL 494
           GK    ++ RM+KD +  + ET+K++
Sbjct: 456 GKEVDDLLGRMEKDGIDENKETKKII 481


>gi|224077120|ref|XP_002305141.1| predicted protein [Populus trichocarpa]
 gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 254/441 (57%), Gaps = 7/441 (1%)

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS-GDYAVHLDLISKI 120
           W   G+ V   EL RI+ +LRK KR+ HAL+V EWM  + DI + S  ++AV LDLI ++
Sbjct: 52  WVRSGNKVRVAELQRIIHDLRKRKRFSHALQVSEWMH-KKDICIFSPSEHAVQLDLIGRV 110

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            G  SAEN+F NL D+ +   T  ALL+ YV+ +++ ++   ++KM E GF K  L YN 
Sbjct: 111 HGFVSAENYFNNLRDQDKNEKTYGALLNCYVRQRETDKSILHLQKMKEMGFAKSSLTYND 170

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELK-KT 238
           ++ LY + GQ +KVPQ+L E+K+N   PD  +Y L + +  +++D E  EK   E++ + 
Sbjct: 171 IMCLYTNVGQHEKVPQVLNEMKENNVLPDNFSYRLCINSFGARDDLEGMEKILNEMEHQP 230

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I  DW +Y+   + YI  +L +KA  TLK+ E R  +K+   Y+ L+SLY  +G K EV
Sbjct: 231 DIVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTGYNHLISLYAKLGNKTEV 290

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           LR+W    S   +  + +Y  ++ SL+KL EFE+AE +  EWES     D RVPN L+  
Sbjct: 291 LRLWDLEKSACERHINKDYIIMMESLLKLSEFEEAEKMLKEWESSGNFYDVRVPNTLIIG 350

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVR 415
           Y  +   E A++    L  KG      +W ++  G+  K ++ K   C K A+      +
Sbjct: 351 YSRKGLCEKAKALLENLTEKGKMTLPNSWGIVAAGFFDKSEVAKAFSCMKAALCLYVENK 410

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLII 475
            W P+ R+I    + L ++G  + AE  + +L+    V+ E+Y+++L+   +AGK    +
Sbjct: 411 GWKPNQRVINGILSWLGDEGSAEDAEAFVSSLKTVIPVNREMYHAVLKANIRAGKEVHRL 470

Query: 476 VERMQKDNVQMDAETQKVLKI 496
           ++ M+  N++ D ET+K+L++
Sbjct: 471 LDGMKTYNIKEDEETKKILRM 491


>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 265/467 (56%), Gaps = 9/467 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +++L  R+   +  + S    + +W++EG ++ + +L+R++R+LR  KRY HALE+ EW+
Sbjct: 34  KESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWI 93

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             ++   +  GD A+ LDLISK+ GL  AE +F   P+ +R      ALL+ Y Q K   
Sbjct: 94  RDKFYFDISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLE 153

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +AEA+M++M + GF+K  L YN ML LY   G+ +K+  ++QE+++N    D  TY + L
Sbjct: 154 KAEAIMQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRL 212

Query: 217 AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-T 274
            A  + +D E  EK  ++L+    ++ DW +Y    + Y+K +L EKA   LK+ E+  +
Sbjct: 213 NAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFIS 272

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            R  R  Y  LL+LY  MG K EV RIW  +     K  +  Y  ++SSL+KL + + AE
Sbjct: 273 GRSRRFGYEILLTLYATMGNKTEVYRIW-NLYKTIGKFFNTGYVAMVSSLLKLDDMDGAE 331

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
             ++EW S +   D RVPN+L+ AY  +  LE AE   +R + +G +P   TW+ L  GY
Sbjct: 332 KTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGY 391

Query: 395 LKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            +  QMEK ++  KKA + + + W P+   ++A    L+ +GD++ AE+L+  LR    V
Sbjct: 392 HENNQMEKAVDTLKKALLATSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLV 451

Query: 454 STEIYNS-LLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
           S   Y+S  L  Y ++ +     + +M  D+  +DAET  V+ +  E
Sbjct: 452 SA--YDSDRLVNYIRSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 496


>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa]
 gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa]
 gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]
          Length = 490

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 247/434 (56%), Gaps = 8/434 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V K+E+   +++LR    Y  A+++ E M  +   K VS D A+HLDL++K RG+ +AEN
Sbjct: 53  VFKWEVGDTIKKLRSRNLYYPAVKLSETMSSRGMNKTVS-DQAIHLDLVAKTRGIPAAEN 111

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +   T  ALL+ Y +   + EAEAL+EKM E       + YN ++ LY   
Sbjct: 112 YFIDLPETSKNLRTYGALLNCYCKELMTEEAEALIEKMKELNLGLSSMSYNSLMTLYTKV 171

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +++P ++QE+K  N  PD  TYN+W+ A A+ ND    E+   E+K+  ++  +W +
Sbjct: 172 GQPERIPAIIQEMKADNVMPDSYTYNVWMRALAAVNDISGVERVIEEMKRDGRVAANWTT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS L S+Y+     +KA   LKE+EK    K+  A+  L++LY   G   EV RIW+ + 
Sbjct: 232 YSNLASIYVDAGYFDKAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLR 291

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F K  +  Y  +I  LV L +   AE  + EWES   T D RV N++++AY     ++
Sbjct: 292 LAFPKTANISYLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVD 351

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            AE    R   +G KP   TWE+    YLK G ++  ++C   A+    G+ +KWVP   
Sbjct: 352 KAEELKERARRRGAKPNSKTWEIFCDYYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPV 411

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
           ++ +     E+Q D+DGAE L+  L+ A   V+ E++ SL+RTYA AG+   ++  R++ 
Sbjct: 412 IVGSLMAHFEQQKDVDGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKM 471

Query: 482 DNVQMDAETQKVLK 495
           +NV++  + QK+L+
Sbjct: 472 ENVEVSDDCQKLLE 485


>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770
 gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana]
 gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana]
 gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana]
 gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 248/438 (56%), Gaps = 8/438 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V K+E+   +++LR    Y  AL++ E ME +   K VS D A+HLDL++K R +++ EN
Sbjct: 53  VFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVS-DQAIHLDLVAKAREITAGEN 111

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +   T  +LL+ Y +   + +AE L+ KM E       + YN ++ LY   
Sbjct: 112 YFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKT 171

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           G+ +KVP M+QELK +N  PD  TYN+W+ A A+ ND    E+   E+ +  ++ PDW +
Sbjct: 172 GETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS + S+Y+   L +KA   L+E+E +  +++  AY  L++LY  +G   EV RIW+ + 
Sbjct: 232 YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLR 291

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
               K ++  Y  +I  LVKL +   AE ++ EW++   T D R+ N+L+ AY     ++
Sbjct: 292 LAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQ 351

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            A     +   +G K    TWE+    Y+K G M + LEC  KA+    G   KW+P   
Sbjct: 352 KANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPE 411

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
            + A  +  E++ D++GAE+LL  L+N   ++  EI+  L+RTYA AGK    +  R++ 
Sbjct: 412 TVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKM 471

Query: 482 DNVQMDAETQKVLKITSE 499
           +NV+++  T+K+L   S+
Sbjct: 472 ENVEVNEATKKLLDEVSQ 489


>gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
           [Vitis vinifera]
          Length = 489

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 245/437 (56%), Gaps = 8/437 (1%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V K+E+   V++LR  KR+  AL++ E M  +  + +   D A++LDLI+K RG+++AEN
Sbjct: 52  VFKWEVGDTVKKLRDRKRFYPALKLSETMA-KRGMNMTISDQAIYLDLITKTRGVAAAEN 110

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +   T  ALL+ Y +   + +AEALME+M E       +PYN ++ LY   
Sbjct: 111 YFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKI 170

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +K+P ++QELK  +  PD  TYN+W+ A A+ ND    E+   E+K+  ++  DW +
Sbjct: 171 GQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTT 230

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS L S+Y+   + EKA   LKE+EKR   ++  A+  L++LY  +G   EV R+W+ + 
Sbjct: 231 YSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLR 290

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F K  +  Y  +I  LV L +   AE  + EWES     D RV N L+ AY     LE
Sbjct: 291 LAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLE 350

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
            AE        +G KP   TWE+    +LK  +M++ ++C   AI    G  +KWVP   
Sbjct: 351 KAEELKEHARRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPE 410

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
           +I       E++ D+DGAE  L  L++    +  E++ SL+R YA AG+   ++  R++ 
Sbjct: 411 IIGVFMQHFEQEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKM 470

Query: 482 DNVQMDAETQKVLKITS 498
           +NV++    +K+L+  S
Sbjct: 471 ENVEVSDSCKKLLEEVS 487


>gi|255556039|ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 485

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 255/444 (57%), Gaps = 5/444 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +  W ++G+ V   EL RI+R+LRK  R+  ALEV EWM  +      S ++AV LDLI 
Sbjct: 34  LDNWVQDGNKVRVGELQRIIRDLRKRNRFTQALEVSEWMNKKGICIFSSTEHAVQLDLIG 93

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RG  SAEN+F NL D  +   T  ALL+ YV+ +++  + +  +KM E G    PL Y
Sbjct: 94  KVRGFLSAENYFNNLMDHDKTDKTYGALLNCYVRQRQTDRSISHWQKMKEMGLASSPLAY 153

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK- 236
           N ++ LYI+ G  +KV  +L E+K+N  SPD  +Y + + +  +++D +  EK   E++ 
Sbjct: 154 NDIMCLYINLGLYEKVLHVLTEMKENKISPDNFSYRICINSYGARSDIQGMEKVLNEMEC 213

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +     DW +Y+ + + YIK  L +KA   L++ E++  +K+ + Y+ L+SLY  +G K 
Sbjct: 214 RLGNAMDWNTYAVVANFYIKAGLADKAVDALRKSEEKLDKKDGIGYNHLISLYATLGIKS 273

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           EVLRIW    S+  +  + ++  ++ SLVKLG+ E+AE +  EWES     D R+PNI++
Sbjct: 274 EVLRIWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAEKVLKEWESSGNFYDVRIPNIVV 333

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVR 415
             Y      E AE+    L+ KG      +W ++  GYL+KG+  K  EC K A   +V 
Sbjct: 334 VGYSKNGLHEKAEASLEALMEKGRATTPNSWAMIASGYLEKGEKAKAFECMKAAFSLNVE 393

Query: 416 K--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
           K  W P+ R++      L ++G  +  E  + +L  A  ++ +IY++LL+   ++G+   
Sbjct: 394 KKGWKPNPRVVMDILIWLGDEGSPEDVEAFVASLSVAIPLNRQIYHALLKAKIRSGRDAH 453

Query: 474 IIVERMQKDNVQMDAETQKVLKIT 497
            I++RM+ D +  D ET+++L I+
Sbjct: 454 EILDRMKTDKIDEDEETKEILGIS 477


>gi|147807263|emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
          Length = 506

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 263/463 (56%), Gaps = 5/463 (1%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G+ +L  ++  L     S    +  W + G+ V   EL RI+ +LRK KR+  ALE+ EW
Sbjct: 37  GKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRKRFSQALEISEW 96

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +        ++AV LDLI ++RG  SAE++F +L +  +   T  ALL+ YV+ +++
Sbjct: 97  MSKKGICAFSPTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQT 156

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
            ++ + ++KM E GF   PL YN ++ LY + GQ +KVP +L E+K+ +  PD  +Y + 
Sbjct: 157 DKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSHVYPDNFSYRIC 216

Query: 216 LAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
           + + A+Q+D +  EK   E+ ++  I  DW +Y+   + YIK  LP+KA   LK+ E+R 
Sbjct: 217 INSYAAQSDIQGMEKVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL 276

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            +++ + Y+ L+SLY ++G K EVLR+W    S   +  + +Y  ++ SLV+LGE E+AE
Sbjct: 277 DKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAE 336

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +  EWES     D RVPNI++  Y  +   E AE+    L+ KG      +W  +  GY
Sbjct: 337 KVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPDSWGTVASGY 396

Query: 395 LKKGQMEKVLECFKKAIG---SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           + +G+MEK +EC K AI    + +   P+ R+I    + L ++G ++  E  + +LR   
Sbjct: 397 MDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSLRIVI 456

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++  +Y++L+    +AGK    ++  M+ D +  D ET+K+L
Sbjct: 457 PMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499


>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 493

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 158/416 (37%), Positives = 238/416 (57%), Gaps = 11/416 (2%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL RR+      + S    + +W EEG  V + +L  ++++LRK  R+  AL++CEW+ 
Sbjct: 36  DTLFRRVYRAGDPRTSIVRVLDQWVEEGRQVKQSDLQTLIKQLRKFGRFNQALQLCEWVR 95

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            + +  L +GD AV L LISK RGL  AE +F ++ +  R      ALLH YV+NK   +
Sbjct: 96  NERNQCLSTGDIAVELHLISKARGLEQAEKYFSSIGESSRDHKVYGALLHCYVENKNLKK 155

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           AEA+M+KM E GF+K PL YN MLNLY   G+ +K+ ++L+E+++    PD  TYN+ + 
Sbjct: 156 AEAIMQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMN 215

Query: 218 ACASQNDKETAEKAFLELKKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           A A+ +D    EK    L K + DP    DW +Y  + + Y K  L E +   LK+ E+ 
Sbjct: 216 AYAAASDITNMEKL---LSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQF 272

Query: 274 TCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
              K + +AY  L++LY  +G KDEV R+W    +L  + N   Y C+ISSL+KL + + 
Sbjct: 273 IGDKQKWLAYQYLMTLYAAIGNKDEVYRVWNLYTNLRKRFNSG-YLCIISSLMKLDDIDG 331

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE I  EWES   + D R+PN+++ +Y  +  ++ AE++ NRL+  G +P   TW+LL  
Sbjct: 332 AERILKEWESGDTSFDFRIPNMMINSYCMKGFVDKAEAYINRLIETGKEPEANTWDLLAS 391

Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           GY   G   KV E  KKAI  S   W P + ++ A    L+   ++D AE ++  L
Sbjct: 392 GYHSNGLTNKVAETLKKAISVSPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLL 447


>gi|224125490|ref|XP_002329818.1| predicted protein [Populus trichocarpa]
 gi|222870880|gb|EEF08011.1| predicted protein [Populus trichocarpa]
          Length = 494

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/440 (35%), Positives = 248/440 (56%), Gaps = 5/440 (1%)

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
           W + G  V   EL RI+ + R  KR+ HAL+V EWM  +         +AV LDLI ++ 
Sbjct: 52  WIQNGKKVKVAELQRIIHDFRMRKRFTHALQVSEWMNKKGICIFSPSQHAVQLDLIGRVH 111

Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           G  SAEN+F NL D+ +   T  ALL+ YVQ +++ ++ + ++KM E GF K  L YN +
Sbjct: 112 GFVSAENYFNNLRDQDKNEKTYGALLNCYVQKRETDKSISHLQKMKEMGFAKSSLSYNDI 171

Query: 182 LNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK-KTK 239
           + LY + GQ +KVPQ+L E+K+N  SPD  +Y L + +  ++ D E  EK   E++ +  
Sbjct: 172 MCLYTNVGQHEKVPQVLNEMKENNVSPDNFSYRLCMNSYGARGDLEGMEKMLNEMEHQPD 231

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  DW SY+   S YIK  L +KA  +LK+ E R  +K+   Y+ L+SLY  +G K EVL
Sbjct: 232 IVVDWNSYAVAASSYIKGGLTDKAIDSLKKSETRLDKKDGTGYNHLISLYATLGEKTEVL 291

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           R+W    S   +  + +Y  +++SLVKL EFE+ E +  EWE+     D RVPN L+  Y
Sbjct: 292 RLWDLEKSTCERPINKDYINIMASLVKLDEFEEVEKVLKEWEASGNFYDVRVPNTLIIGY 351

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRK 416
             +   E A++    L  KG       W  +  G+  K ++ K   C K A+      ++
Sbjct: 352 SGKGLYEKAKALLENLTEKGKATLPNIWGKVAAGFFDKNEVAKAFSCMKAALCLYEENKE 411

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIV 476
           W P+ ++IT   + L ++G  + AE  + +L+N   ++ E+Y+++L+ + +AGK    ++
Sbjct: 412 WKPNQKVITGILSWLGDEGSAEDAEAFVSSLKNVIPMNREMYHAVLKAHIRAGKEVHGLL 471

Query: 477 ERMQKDNVQMDAETQKVLKI 496
           + M+   ++ D ET+K+L +
Sbjct: 472 DGMKTCKIKEDEETKKILSM 491


>gi|359483464|ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 261/463 (56%), Gaps = 5/463 (1%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G+ +L  ++  L     S    +  W + G+ V   EL RI+ +LRK KR+  ALE+ EW
Sbjct: 37  GKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRKRFSQALEISEW 96

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +        ++AV LDLI ++RG  SAE++F +L +  +   T  ALL+ YV+ +++
Sbjct: 97  MSKKGICAFSPTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQT 156

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
            ++ + ++KM E GF   PL YN ++ LY + GQ +KVP +L E+K+ N  PD  +Y + 
Sbjct: 157 DKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQSNVYPDNFSYRIC 216

Query: 216 LAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
           + +  +Q+D +  E    E+ ++  I  DW +Y+   + YIK  LP+KA   LK+ E+R 
Sbjct: 217 INSYGAQSDIQGMENVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL 276

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            +++ + Y+ L+SLY ++G K EVLR+W    S   +  + +Y  ++ SLV+LGE E+AE
Sbjct: 277 DKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAE 336

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +  EWES     D RVPNI++  Y  +   E AE+    L+ KG      +W  +  GY
Sbjct: 337 KVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKITTPNSWGTVASGY 396

Query: 395 LKKGQMEKVLECFKKAIG---SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           + +G+MEK +EC K AI    + +   P+ R+I    + L ++G ++  E  + +LR   
Sbjct: 397 MDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVEDVEAFVGSLRIVI 456

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++  +Y++L+    +AGK    ++  M+ D +  D ET+K+L
Sbjct: 457 PMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499


>gi|326531954|dbj|BAK01353.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 255/475 (53%), Gaps = 11/475 (2%)

Query: 25  TLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKL 84
           T   A E++G    D L  RLL L  +  +AA  + +W +E   V + +L R V +LR+ 
Sbjct: 38  TPATAGEREG----DPLSWRLLRL-RSPGAAAAAIDRWAQERGRVSRPDLQRAVSQLRRA 92

Query: 85  KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS 144
           +RY HALE+  WM+   +IKL+  D+A  LDLI+K+ G S AE ++  LP+         
Sbjct: 93  RRYGHALEILSWMDSHKEIKLLPLDHAARLDLIAKVHGTSQAEEYYNKLPNSASREAASF 152

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            LLH YV  +   +AE+ M  +   G    P  +N M+ LY++  + +KV  ++  +K+N
Sbjct: 153 PLLHCYVAERNVQKAESFMASLQSIGLPVDPHSFNEMMKLYVATCEYEKVFSVIDLMKRN 212

Query: 205 TSP-DVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEK 262
             P + ++YNLW+ AC S +D  + +  F E+     I+  W +Y TL ++++K  L  K
Sbjct: 213 NIPRNALSYNLWMNAC-SVSDVTSVQSVFKEMVNDGTIEVGWSTYCTLANIFMKHGLNSK 271

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+  E +     R+ YS +++ Y  +G  D V+R+W+    +  ++  A Y   I 
Sbjct: 272 AFACLRTAETKLSTAQRLGYSFVMTCYAALGDSDGVMRLWEASKCVPGRIPSANYMSAIL 331

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L+K+G+ ++AE I+  WE      D RV N+LL AY+    +E AE  +  ++ KG +P
Sbjct: 332 CLIKVGDIDRAEWIFGSWEVECRKHDVRVSNVLLGAYVRNGWIEKAEKLHLHMLEKGGRP 391

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGA 440
            Y TWE+L  G+++  QM+K +   KKA+  ++   W P  RL+ A     EEQG+ D A
Sbjct: 392 NYKTWEILMEGFVQSRQMDKAVNAMKKALSLMKGCHWRPPLRLVEAIATFFEEQGNTDDA 451

Query: 441 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM-PLIIVERMQKDNVQMDAETQKVL 494
              +  L+     S  +Y S+LR Y KA  M P  I E + +D++ MD E   ++
Sbjct: 452 NRYIKVLQKFNLTSLPLYKSVLRAYIKADTMLPTNISEMIARDDIVMDEEMDHLI 506


>gi|15240937|ref|NP_198098.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214236|sp|Q3E911.1|PP400_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27460
 gi|332006308|gb|AED93691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 255/468 (54%), Gaps = 9/468 (1%)

Query: 23  ITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELR 82
           +++L   ++      R++L + +L     +RS    +++  + GH V   EL  I + L 
Sbjct: 23  VSSLADGSDTSSVANRNSL-KEILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLI 81

Query: 83  KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---MRG 139
           +  RY  AL++ EWME Q DI+    D A+ LDLI K  GL   E +FE L      MR 
Sbjct: 82  RSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRV 141

Query: 140 PDTCS-ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
             +    LL +YV+NK   EAEALMEK++  GFL  P P+N M+ LY ++GQ +KV  ++
Sbjct: 142 AKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVV 201

Query: 199 QELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIK 256
             +K N  P +V++YNLW+ AC   +     E  + E+   K ++  W S  TL ++YIK
Sbjct: 202 SMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIK 261

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               EKA   L++ EK   R NR+ Y  L++LY ++G K+ V+R+W+   S+  +++   
Sbjct: 262 SGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVN 321

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y CV+SSLVK G+ E+AE ++ EWE+     D RV N+LL AY+   ++  AES +  ++
Sbjct: 322 YICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVL 381

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQ 434
            +G  P Y TWE+L  G++K   MEK ++   +    +R+  W P H ++ A     E++
Sbjct: 382 ERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKE 441

Query: 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKD 482
             I+ A   +  L   G  S  +Y  LLR +  A +    I E M+ D
Sbjct: 442 EKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLD 489


>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
          Length = 499

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 263/467 (56%), Gaps = 9/467 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +++L  R+   +  + S    + +W++EG ++ + +L+R++R+LR  KRY HALE+ EW+
Sbjct: 34  KESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWI 93

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             ++   +  GD A+ LDLISK+ GL  AE +F   P+ +R      ALL+ Y Q K   
Sbjct: 94  RDKFYFDISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLE 153

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +AEA+M++M + GF+K  L YN ML LY   G+ +K+  ++QE+++N    D  TY + L
Sbjct: 154 KAEAIMQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRL 212

Query: 217 AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-T 274
            A  + +D E  EK  ++L+    ++ DW +Y    + Y+K +L EKA   LK+ E+  +
Sbjct: 213 NAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFIS 272

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            R  R  Y  LL+LY  MG K E  RIW  +     K  +  Y  ++SSL+KL + + AE
Sbjct: 273 GRSRRFGYEILLTLYATMGNKTEXYRIW-NLYKTIGKFFNTGYVAMVSSLLKLDDMDGAE 331

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
             ++EW S +   D RVPN+L+ AY  +  LE AE   +R + +G +P   TW+ L  GY
Sbjct: 332 KTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGY 391

Query: 395 LKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            +  QMEK ++  KKA + + + W P+   ++A    L+ + D++ AE+L+  LR    V
Sbjct: 392 HENNQMEKAVDTLKKALLATSQGWKPNPVTLSACLEYLKGKXDVEEAENLIRLLREQSLV 451

Query: 454 STEIYNS-LLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
           S   Y+S  L  Y ++ +     + +M  D+  +DAET  V+ +  E
Sbjct: 452 SA--YDSDRLVNYIRSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 496


>gi|395146485|gb|AFN53641.1| pentatricopeptide repeat-containing protein [Linum usitatissimum]
          Length = 516

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 260/479 (54%), Gaps = 13/479 (2%)

Query: 31  EKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHA 90
           E++ +G    L RRL +L     +    +  +  +G ++ K EL R V+ELRK  R+ H 
Sbjct: 36  EQRSSGNPLRLYRRLSALGATGGTVDKVLNDYVMDGMSIRKVELMRCVKELRKYGRFNHG 95

Query: 91  LEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150
           LE+ EWME +  I L  GD AV LDLI K +G++ AEN+F  L    + P T  +LL+SY
Sbjct: 96  LEIMEWME-KRGINLGHGDLAVRLDLICKTKGITEAENYFNGLVPSAKNPATYGSLLNSY 154

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDV 209
            +   S +A  L +KM +  F +  LP+N+++++Y+  GQ +KVP+++ ++K+ N  P  
Sbjct: 155 CKKLDSEKALQLFQKMDKLKFFRNSLPFNNLMSMYMRLGQQEKVPELVSQMKQMNLPPCT 214

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKT---KIDPDWISYSTLTSLYIKMELPEKAATT 266
            TYN+W+ +     D E  +K   E++       + +W +YS L ++Y      E+A   
Sbjct: 215 FTYNIWIQSLGHMRDFEGIKKVLEEMRNDVNFGNNFNWTTYSNLAAVYTSAGEFERAKLA 274

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           LK ME+R    +R AY  LL+LY  +   +EV R+W  + + F ++ +A Y  ++ +L +
Sbjct: 275 LKMMEERIDSHDRNAYHFLLTLYGGIADLEEVHRVWGCLKAKFNQVTNASYLVMLQALAR 334

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           L + E    +++EWES+  + D RV N+ +  Y+ +     AE+ ++  + +   P + T
Sbjct: 335 LKDVEGISKVFEEWESVCTSYDMRVANVAIRVYLEKGMYNEAEAVFDGAMERTPGPYFKT 394

Query: 387 WELLTWGYLKKGQMEKVLECFKKAI--------GSVRKWVPDHRLITAAYNKLEEQGDID 438
            E+L    LK+ Q+E  L+  K A         G  ++W P   ++ A +   EE+ D++
Sbjct: 395 REMLMVSLLKRRQLEPALKQMKAAFTEVGQNEKGHEKEWRPSAEIVNAFFGYFEEEKDVE 454

Query: 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKIT 497
           GAE +   L+      + +Y  L++TY  AGK  + +  R+ +D V++D E Q++L + 
Sbjct: 455 GAEKMWKILKCINRCDSTVYRLLMKTYIAAGKSAVDMRTRLAEDAVEVDEEIQRLLDVV 513


>gi|147803609|emb|CAN75355.1| hypothetical protein VITISV_002476 [Vitis vinifera]
          Length = 736

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 223/377 (59%), Gaps = 10/377 (2%)

Query: 92  EVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150
           +V EWM  + +  +L S D A+ LDLI+K+ G+SSAE++F  LPD ++      ALL++Y
Sbjct: 320 KVYEWMNNRGERFRLSSSDAAIQLDLIAKVCGVSSAEDYFSRLPDTLKDKRIYGALLNAY 379

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDV 209
           VQ K   +AE L+EK+   G+   PLP+N M+ LY++  +LDKV  M+ E+  KN   D+
Sbjct: 380 VQAKMRDKAEILIEKLRNKGYATTPLPFNVMMTLYMNLKELDKVQSMISEMMNKNIQLDI 439

Query: 210 VTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
            +YN+WL++C S    E  E+ F ++K +  I+P+W ++ST+ ++YIK+   EKA   LK
Sbjct: 440 YSYNIWLSSCEST---ERMEQVFEQMKLERTINPNWTTFSTMATMYIKLGQFEKAEECLK 496

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           ++E R   ++R+ Y  L+SLY + G K EV R W    S F  + +  Y  +ISSLV++G
Sbjct: 497 KVESRITNRDRMPYHYLISLYGSTGNKAEVYRAWNIYKSKFPNIPNLGYHALISSLVRVG 556

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           + E AE IY+EW S+  + DPR+ N+LL  Y+    LE AE F + ++  G KP  TTWE
Sbjct: 557 DLEGAEKIYEEWLSVKSSYDPRIGNLLLGCYVKEGFLEKAEGFLDHMIEAGGKPNSTTWE 616

Query: 389 LLTWGYLKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           +L  G     ++   L CFK+A+   GS   W P    ++A  +  EE+ D    E L+ 
Sbjct: 617 ILAEGNTGVKKISDALSCFKRAVLAEGS-NGWKPKPVNVSAFLDLCEEEADTATKEALMG 675

Query: 446 TLRNAGHVSTEIYNSLL 462
            LR  G +  E Y SL 
Sbjct: 676 LLRQMGCLEDEPYASLF 692



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEV 93
           RR+  +   +  +A  + +W+ EG  + K+EL R+V+ELRK KR+K ALE+
Sbjct: 62  RRISLMENPEMGSASVLNQWENEGKRLTKWELCRVVKELRKFKRFKMALEL 112


>gi|125591164|gb|EAZ31514.1| hypothetical protein OsJ_15655 [Oryza sativa Japonica Group]
          Length = 531

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 226/387 (58%), Gaps = 7/387 (1%)

Query: 87  YKHAL--EVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143
           + H+L  +V +WM  + D   L S D A+ LDLI+K+RG+S AE +FE LPD ++   T 
Sbjct: 141 HTHSLAKDVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTY 200

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
            +LL+ Y Q     + E+  E+M + GF    LP+N ++N Y+   + +KV  ++ E+ +
Sbjct: 201 GSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMME 260

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPE 261
           +N + DV TYN+W+ +CA+  D +  E+ F ++ +   +  +W +Y+TL S++IK+   E
Sbjct: 261 RNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSE 320

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA  +LKE EKRT  + +  +  L++LY+++G K+EV R+W    + F  +++  Y  V+
Sbjct: 321 KAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVL 380

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S+LV+LG+ E AE +Y+EW S S + DP+  NILLA Y     +  AE   NR V KG  
Sbjct: 381 SALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGN 440

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           P   TWE+L   YLK GQ  + L C +K  A+ S  KW P    + +     +E+ D + 
Sbjct: 441 PKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFKEKNDAES 500

Query: 440 AEHLLVTLRNAGHVSTEIYNSLLRTYA 466
           A+ L+  LR+      E Y SL+ TYA
Sbjct: 501 ADRLMNVLRSRRCEENEEYKSLINTYA 527


>gi|224114960|ref|XP_002316903.1| predicted protein [Populus trichocarpa]
 gi|222859968|gb|EEE97515.1| predicted protein [Populus trichocarpa]
          Length = 437

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 248/436 (56%), Gaps = 6/436 (1%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
            L  R+  L   + S A  + +W EEG  V  YEL  IV+ LR+ KR+K ALEV +WM  
Sbjct: 1   NLYSRISPLGDPRISLAPVLDQWVEEGKKVKDYELRTIVKGLRERKRFKQALEVSQWMSS 60

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
                    D AV LDLI K+ GL SAE++F+NL +K +   T  ALL+ YV+     ++
Sbjct: 61  NRLCNFSPSDDAVRLDLIGKVHGLESAESYFKNLDEKDKIHKTYGALLNCYVRGGLVEKS 120

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAA 218
            + ++KM E GF    L YN ++ LY++ G L+KVP +L ++K+N  SPD+ +Y + L +
Sbjct: 121 LSHVQKMKELGFFSTALNYNDLMCLYVNTGLLEKVPDVLSDMKENGISPDLFSYRICLKS 180

Query: 219 CASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              ++D +  EK   E++ ++ I  DW +++T+ ++Y++  L EKA   LK+ E++   K
Sbjct: 181 YGERSDFDNVEKILREMESQSHISMDWRTFATVANIYLEAGLKEKALVYLKKCEEKV-NK 239

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N + Y+ L+SLY ++G KDE++R+W+   +   K  + +Y  ++ SLVKLG  E+AE + 
Sbjct: 240 NALGYNHLISLYASLGNKDEMMRLWELAKANCKKQLNRDYITILGSLVKLGHLEEAEKLL 299

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +WES     D RVPN++L  Y  +   E AE+    ++ K      ++W +++ GY+ K
Sbjct: 300 QDWESSCQYYDFRVPNVVLIGYSRKGLPEKAEAMLQDIIEKQKMKNPSSWSIISAGYMDK 359

Query: 398 GQMEKVLECFKKAIGSVRK---WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
             MEK  EC K+A+ +  +   W P   +I+   N L +  D    E  +  L      S
Sbjct: 360 QNMEKAFECMKEALAAETENNGWRPKPAMISNILNWLGDNRDAQEVEAFVGLLETKVPKS 419

Query: 455 TEIYNSLLRTYAKAGK 470
            E+Y++L+++Y + GK
Sbjct: 420 REMYHALIKSYIRCGK 435


>gi|255553773|ref|XP_002517927.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542909|gb|EEF44445.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 247/448 (55%), Gaps = 6/448 (1%)

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           K S    + +W  EGHTV K  L  +V  ++  KR+ HALE+  WM       L   D A
Sbjct: 61  KESIIPVLNQWVSEGHTVGKALLQSLVHLMKGYKRFNHALEMSHWMTDCRYFSLSPSDVA 120

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           V L+LI ++ G + AE +FE + DK++  +   ALL  YV+     +AEA++++M E G 
Sbjct: 121 VRLELIYRVYGSAHAEMYFEKISDKLKSGNVYGALLSGYVRENSVQKAEAVLQEMREKGI 180

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEK 230
                PYN M+NLY  NG  +K+  + +E+++N  P D  T    +AA  + +D    E+
Sbjct: 181 ATSSFPYNIMINLYAQNGAFEKIDILKEEMERNGIPQDKYTMRNLMAAYVAASDISGMER 240

Query: 231 AFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSL 288
              +L+   ++   W +YS   S Y+K+ L EKA   L++ME+     K   A++ LL+L
Sbjct: 241 ILNQLETHPQLGHGWQAYSVAASGYLKVGLIEKALKMLRKMEETMPIGKKTSAFNYLLTL 300

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           Y   G KDE+ R+W     L A++ + ++ C+ISSL K+ + E AE I++EWES     D
Sbjct: 301 YAKTGRKDELYRVWNSYKPL-AEVKETQFCCMISSLEKVDDIEGAERIFEEWESQCMMYD 359

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            RV N LL AY  R  L        +   +G  P  +TW  +   Y+ + QM K +E  K
Sbjct: 360 FRVLNKLLLAYC-RKGLYTKAEAAFKKAAEGRTPYASTWITMAMSYIGQNQMSKAVEMLK 418

Query: 409 KAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
           KAI   RK W P+   +T   + LEEQGD++G E ++ +L++   ++ +IY+ L+RTY  
Sbjct: 419 KAISVSRKGWKPNPITLTTCLDYLEEQGDVEGIEEIVKSLKSTESLTRDIYHRLVRTYTA 478

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLK 495
           AG     ++++M+ DN+  D ET K+L+
Sbjct: 479 AGIPVTKVIDKMKMDNIAADEETHKILE 506


>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 250/464 (53%), Gaps = 14/464 (3%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL  R+        S    + KW EEG+ V K EL + V++LRK +R+ HAL+V EWM 
Sbjct: 39  DTLYGRISKAGKPSISIVPILEKWLEEGNDVKKPELQKFVKQLRKYRRFTHALQVSEWMT 98

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            +    L+ GD AV LDLISK+ GL  AE +F ++PD  R      ALL+    +K   +
Sbjct: 99  DKKGCSLLPGDVAVRLDLISKVHGLVKAEEYFNSIPDTSRDRQVYGALLNCCAHSKLLGK 158

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLA 217
           AEA M+KM + GF+K  L YN ML+LY   G  +K+  ++QE+++N  S D +TY + L 
Sbjct: 159 AEATMQKMKDLGFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLN 218

Query: 218 ACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           AC + +D E  EK  +   K ++DP+    + +Y    + Y+K  L +K    LK  E+ 
Sbjct: 219 ACVNSSDIEGMEKLLM---KMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQL 275

Query: 274 -TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
            +    R AY  LL+LYT  G K EV RIW K   +  +  ++ Y C+ISSL+KL + + 
Sbjct: 276 ISGNTRRFAYEFLLTLYTASGNKAEVYRIWNKYKEI-GRFFNSGYICMISSLLKLDDIDG 334

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE I++EW+S     D R+PN ++  Y  +  LE AE++ N++V  G +P  T+W  L  
Sbjct: 335 AERIFEEWDSKKVLFDIRIPNSMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAA 394

Query: 393 GYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
           GY   GQM K +E  +KAI SV K  W P    ++A    L+ QGD +  E LL   +  
Sbjct: 395 GYHSSGQMTKAVETIRKAI-SVSKPGWKPSLLTLSACLEFLKGQGDAETLEELLKIAKEH 453

Query: 451 GHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
              S   Y + L +      +  I +++M++D      E    L
Sbjct: 454 CCFSAGAY-AKLSSCIDNENLTTIALDQMEEDYQNFSEEPPAAL 496


>gi|356514762|ref|XP_003526072.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 256/462 (55%), Gaps = 7/462 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           R  L  R+  L     S    + +W EEG+ V    L+ I++ LR   R   ALEV EWM
Sbjct: 31  RRNLYSRISPLGDPSISVVPVLDEWIEEGNAVDGPHLHHIIKILRTRNRNTQALEVSEWM 90

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +  + + S D AV LDLI ++ G+ SAE + ++L D  +      ALL+ YV+     
Sbjct: 91  SSK-GLPISSRDQAVQLDLIGRVHGVESAERYLQSLSDGDKTWKVHGALLNCYVREGLVD 149

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           ++ +LM+KM + GF+   L YN++++LY    Q +KVP +L+++KK+   P++ +Y + +
Sbjct: 150 KSLSLMQKMKDMGFVSF-LNYNNIMSLYTQTQQYEKVPGVLEQMKKDGVPPNIFSYRICI 208

Query: 217 AACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            +   + D    EK   E+++   I  DWI+YS +T+ YIK ++ EKA   L + EK+T 
Sbjct: 209 NSYCVRGDLANVEKLLEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEKKTH 268

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           R N VAY+ L+S    +  K  ++R WK   +   K  + EY  ++  LVKLGE +KAE 
Sbjct: 269 RGNTVAYNHLISHNAALRSKGGMMRAWKLQKANCKKQLNREYITMLGCLVKLGELDKAEK 328

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +  EWE    T D RVPNILL  Y  R  +E AE+   ++V +G  P   +W ++  GY+
Sbjct: 329 VLGEWELSGNTCDFRVPNILLIGYCQRGLVEKAEALLRKMVAEGKTPIPNSWSIVASGYV 388

Query: 396 KKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
            K  MEK  +C K+A+      ++W P   +I++ ++ +    DI+ AE  + + ++   
Sbjct: 389 AKENMEKAFQCMKEAVAVHAQNKRWRPKVDVISSIFSWVTNNRDIEEAEDFVNSWKSVNA 448

Query: 453 VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           ++  +Y SL++   + GK    I+E M+ DN+++D E ++ L
Sbjct: 449 MNRGMYLSLMKMCIRYGKHVDGILESMKADNIEIDEEIKETL 490


>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/495 (32%), Positives = 267/495 (53%), Gaps = 20/495 (4%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEE 65
           L  ++A  R FST          AT+ K A    +L  +L +L   +   A T+ KW +E
Sbjct: 10  LMRSVATPRWFST----------ATKDKEA----SLYWKLSALRGTEGDVAETLDKWVKE 55

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G +V ++++   V +LR+ K+YKHA ++ EWME   +  L + D A+ +DL++K  G++ 
Sbjct: 56  GKSVKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKN-DLNNADRAIRIDLLAKTEGIAQ 114

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           AEN+F +L +  +   T  ALL+ Y +     +A  L +K+ E  F+   L YN+M++LY
Sbjct: 115 AENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNFVSSALSYNNMISLY 174

Query: 186 ISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           +  GQ +KVP ++ E+++   P D+ TYNL + + AS  D E  E+   ++KK  ++ DW
Sbjct: 175 LRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLEKMKKRGVERDW 234

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +Y  L ++Y+     +KA   L+++E+     +  A+  L++LY      + V R W+ 
Sbjct: 235 FTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWES 294

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           +     K+N+  Y  ++ +L KLG+    E  + EWES   T D R+ N++L +Y+NR  
Sbjct: 295 LKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREM 354

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF----KKAIGSVRKWVPD 420
           +E A      +  +G +    T +L    YLKK Q++  ++       KA     KW P 
Sbjct: 355 IEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPT 414

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
              IT      EE  D+D AE    T+R    + ++IY+SLLRTY  AGK   ++ ERM+
Sbjct: 415 EETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMK 474

Query: 481 KDNVQMDAETQKVLK 495
            D +++ +ET+K+L+
Sbjct: 475 DDGIEISSETEKLLQ 489


>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
 gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
          Length = 498

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 263/492 (53%), Gaps = 16/492 (3%)

Query: 9   TLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHT 68
           ++A  R FST          AT         +L  +L +L   +   A T+ KW +EG +
Sbjct: 13  SVATPRWFST----------ATATAAKDKEASLYWKLSALRGTEGDVAETLDKWVKEGKS 62

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V ++++   V +LR+ K+YKHA ++ EWME   +  L + D A+ +DL++K  G++ AEN
Sbjct: 63  VKRFDMISCVNQLRRFKKYKHAAQIYEWMEKSKN-DLNNADRAIRIDLLAKTEGIAQAEN 121

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +L +  +   T  ALL+ Y +     +A  L +K+ E  F+   L YN+M++LY+  
Sbjct: 122 YFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNFVSSALSYNNMISLYLRV 181

Query: 189 GQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           GQ +KVP ++ E+++   P D+ TYNL + + AS  D E  E+   ++KK  ++ DW +Y
Sbjct: 182 GQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLDKMKKRGVERDWFTY 241

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
             L ++Y+     +KA   L+++E+     +  A+  L++LY      + V R W+ +  
Sbjct: 242 GNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWESLKL 301

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              K+N+  Y  ++ +L KLG+    E  + EWES   T D R+ N++L +Y+NR  +E 
Sbjct: 302 AHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREIIEE 361

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF----KKAIGSVRKWVPDHRL 423
           A      +  +G +    T +L    YLKK Q++  ++       KA     KW P    
Sbjct: 362 ANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEET 421

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDN 483
           IT      EE  D+D AE    T+R    + ++IY+SLLRTY  AGK   ++ ERM+ D 
Sbjct: 422 ITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMKDDG 481

Query: 484 VQMDAETQKVLK 495
           +++ +ET+K+L+
Sbjct: 482 IEISSETEKLLQ 493


>gi|22328859|ref|NP_680735.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146702|sp|Q84JR3.1|PP334_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g21705, mitochondrial; Flags: Precursor
 gi|28393142|gb|AAO42004.1| unknown protein [Arabidopsis thaliana]
 gi|28827500|gb|AAO50594.1| unknown protein [Arabidopsis thaliana]
 gi|332659092|gb|AEE84492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 492

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/503 (31%), Positives = 263/503 (52%), Gaps = 21/503 (4%)

Query: 2   FLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRK 61
            LR + A L A+R + T   K TTL                 ++  L   K S    ++ 
Sbjct: 3   ILRRIPANLIASRYYYTNRVKKTTLY---------------SKISPLGDPKSSVYPELQN 47

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
           W + G  V   EL RIV +LR+ KR+ HALEV +WM           ++AVHLDLI ++ 
Sbjct: 48  WVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVY 107

Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           G  +AE +FENL ++ +   T  ALL+ YV+ +   ++    EKM E GF+   L YN++
Sbjct: 108 GFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNI 167

Query: 182 LNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTK 239
           + LY + GQ +KVP++L+E+K+ N +PD  +Y + + A  +  D E       ++ ++  
Sbjct: 168 MCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQD 227

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  DW +Y+     YI     ++A   LK  E R  +K+   Y+ L++LY  +G K EVL
Sbjct: 228 ITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVL 287

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           R+W     +  +  + +Y  V+ SLVK+    +AE +  EW+S     D RVPN ++  Y
Sbjct: 288 RLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGY 347

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRK 416
           I ++  E AE+    L  +G      +WEL+   Y +KG +E   +C K A+G     RK
Sbjct: 348 IGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRK 407

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-II 475
           W P   L+T+  + + ++G +   E  + +LRN   V+ ++Y++L++   + G   +  +
Sbjct: 408 WRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTL 467

Query: 476 VERMQKDNVQMDAETQKVLKITS 498
           ++RM+ D +++D ET  +L   S
Sbjct: 468 LQRMKDDKIEIDEETTVILSTRS 490


>gi|297729251|ref|NP_001176989.1| Os12g0531500 [Oryza sativa Japonica Group]
 gi|255670362|dbj|BAH95717.1| Os12g0531500 [Oryza sativa Japonica Group]
          Length = 352

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 160/221 (72%)

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           T++  +  + R+W+KM   F K +D EY C+++SL + G+  +AE+ Y EWES SGT D 
Sbjct: 132 TSLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSLTRFGDIAEAESFYSEWESASGTRDS 191

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           R+PN +LA YI    +E AE F + +V KG+KP Y+TWEL  WGYL  G+M+KVLEC KK
Sbjct: 192 RIPNTILAFYIKNGMMEKAEGFLDHIVQKGVKPSYSTWELFVWGYLSDGRMDKVLECLKK 251

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
           A+  + KW P+ +L TA Y+++EE+GDI+ AE LLV  R AG+V+TEIYNS+LRTYAKA 
Sbjct: 252 ALSCLEKWDPNPQLATAIYSQIEEKGDIEAAEKLLVMFREAGYVTTEIYNSVLRTYAKAE 311

Query: 470 KMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
            MPLI+ ERM +D V MD ET+ +L++TS+ P+ EVS++ S
Sbjct: 312 LMPLIVDERMDQDKVSMDDETRSLLRLTSKYPIGEVSTLMS 352


>gi|242066836|ref|XP_002454707.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
 gi|241934538|gb|EES07683.1| hypothetical protein SORBIDRAFT_04g035970 [Sorghum bicolor]
          Length = 527

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/447 (31%), Positives = 232/447 (51%), Gaps = 4/447 (0%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           +W  E   + + EL R +  LR+ +RY+HALE+  WME    + L S D+A  LDLI+K 
Sbjct: 78  RWARESVHISQPELRRAIAMLRRARRYEHALEIFSWMESCNSVLLSSWDHAARLDLIAKA 137

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            G S AE ++  L            LLH YV  +   +AE  M ++  CG    P  +N 
Sbjct: 138 YGTSQAEEYYNKLQSPAARQAASFPLLHCYVTERNVQKAETFMAQLQSCGLPVDPHSFNE 197

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLE-LKKT 238
           ++ LYI+  Q +K   ++  +K+N  P +V++YNLW+  CA  +     +  F E L   
Sbjct: 198 IMKLYIATFQYEKALSVIDLMKRNNIPRNVLSYNLWMNVCAEVSGVAPVQSVFQEMLNDE 257

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            ++  W +Y TL +++ K  L  KA   L++ E +     R+ YS +++ Y  +   D V
Sbjct: 258 TVEVGWSTYCTLANIFRKNGLNTKAQACLRKAETKLSPTGRLGYSFVMTCYAALNDSDGV 317

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           +R+W+   S+  ++  A Y   +   +K+G+  +AE I+  WE+     D RV N+LL A
Sbjct: 318 MRLWEASKSVPGRIPAANYMTAMLCSIKVGDISQAEWIFGSWEAGCRKHDVRVSNVLLGA 377

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-- 416
           Y+    +E AE  +  ++ KG +P Y TWE+L  GY++  QM+K + C KK +  ++   
Sbjct: 378 YVRNRWIEKAERLHLHMLEKGARPNYKTWEILMEGYVQSRQMDKAVGCMKKGLSLLKSCH 437

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIV 476
           W P   L+ A     EEQG  D A   +  L+     S  +Y SL+R Y  A  +P  I+
Sbjct: 438 WRPPLELMEAIGKHFEEQGSADDAYRYIKVLQRFNLTSLPLYKSLIRAYINADIVPPNIL 497

Query: 477 ERMQKDNVQMDAETQKVLKITSEMPVS 503
           E + KD +  D E  +++ + S++ ++
Sbjct: 498 EMIAKDQIVTDEEMDRLIILASKIDIT 524


>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 486

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 236/416 (56%), Gaps = 11/416 (2%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL RR+      + S    + +W EEG  V++ +L +++++LR   R+ HAL++CEW  
Sbjct: 36  DTLFRRVYRAGDPRTSIVRVLDQWVEEGRQVNQSDLQKLIKQLRTFGRFNHALQLCEWER 95

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            + +     G  A+ L LISK RGL  AE +F ++ +  R      ALLH YV+NK   +
Sbjct: 96  NERNKCPSPGHIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKK 155

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           AEA+M+KM E GF+K PL YN MLNLY   G+ +K+ ++++E+++     +  TYN+ + 
Sbjct: 156 AEAIMQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMN 215

Query: 218 ACASQNDKETAEKAFLELKKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           A A+ +D    EK    L K + DP    DW  Y T+ + Y K  L E + + LK+ E+ 
Sbjct: 216 AYAAASDITNMEKL---LSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQL 272

Query: 274 TCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
              K + +AY  L++LY  +G KDEV R+W    +L  + N   Y C+ISSL+KL + + 
Sbjct: 273 IGDKQKWLAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSG-YLCIISSLMKLDDIDG 331

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE I  EWES   + D ++PN+++ +Y  +  ++ AE++ +RL+  G +P    W+ L  
Sbjct: 332 AERILKEWESGDTSFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLAS 391

Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           GY   G   K  E  KKAI  S  +W P++ ++ A    L+  G+++ AE ++  L
Sbjct: 392 GYHSNGLTNKAAETLKKAISVSPPRWKPNYDILAACLEYLKTNGNVELAEEIIGLL 447


>gi|359480173|ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/490 (31%), Positives = 263/490 (53%), Gaps = 6/490 (1%)

Query: 4   RSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDT-LGRRLLSLVYAKRSAAITMRKW 62
           R + A    AR   T AA      +A +      R   L  RL +L     S A T+ + 
Sbjct: 8   RLISAGAGLARRLCTAAAATEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEH 67

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
            +EG  + K+EL+  +++LRK ++++HALE+ +WME    I     DYAV LDL+SK +G
Sbjct: 68  IKEGKLIAKHELSSCIKQLRKYRQFQHALEIMDWME-NRKIFFSYADYAVRLDLLSKTKG 126

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           L++AE +F NL    +   T   LL+ Y + K   +A AL EKM E  F    L +N+++
Sbjct: 127 LATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLM 186

Query: 183 NLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +L++  G+ + VP ++ E+KK + SPD  TYN+ + + A  ND E AE+   E+K+   D
Sbjct: 187 SLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENED 246

Query: 242 P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
              W +YS L ++Y+   L EKA   LK++E+     +R+AY  L+SLY  +    EV R
Sbjct: 247 KLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNR 306

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W  + S F K N+  Y  ++ +L  L + +  +  ++EW+S   + D R+ N+ + A++
Sbjct: 307 VWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFL 366

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWV 418
             + ++ AES     V +   P YT  ++    +LK  +++  L+  + A   V+  +W 
Sbjct: 367 GWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQ 426

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVER 478
           P    + A     EE+ D++GAE     L+N   + +  Y  LL+T   AG+    + +R
Sbjct: 427 PAPERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKR 486

Query: 479 MQKDNVQMDA 488
           M++D++++D+
Sbjct: 487 MKEDDIEVDS 496


>gi|297832672|ref|XP_002884218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330058|gb|EFH60477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 491

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/460 (35%), Positives = 247/460 (53%), Gaps = 15/460 (3%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL RR+        S    +  W ++GH V   EL+ I++ LRK  R+ HAL++ +WM 
Sbjct: 39  DTLQRRVARAGDPSASIIRVLDGWLDQGHLVKTSELHGIIKMLRKFSRFSHALQISDWMS 98

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
                ++  GD A+ LDLI+K+ GL  AE FFE +P + R      ALL+ Y   K   +
Sbjct: 99  EHRVHEITEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 158

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLA 217
           AE + ++M E GFLK  LPYN MLNLY+  G+   V ++L+E++  T  PD+ T N  L 
Sbjct: 159 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDGTVKPDIFTVNTRLH 218

Query: 218 ACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-C 275
           A ++ +D E  EK  +  +  T +  DW +Y+   + YIK  L EKA   L++ E+    
Sbjct: 219 AYSAVSDVEGMEKFLMRCEADTGLHLDWRTYADTANGYIKAGLTEKAIEMLRKSEQMVNP 278

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEFEK 332
           RK + AY  L+S Y   G K+EV R+W    SL+ +++   +  Y  VIS+L+K+ + E+
Sbjct: 279 RKRKHAYEVLMSFYGAAGKKEEVYRLW----SLYKELDGFYNTGYISVISALLKMDDIEE 334

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
            E I +EWE+     D R+P++L+  Y  +  +E AE   N LV K      +TWE L  
Sbjct: 335 VEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNMLVQKWRVEDTSTWERLAL 394

Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           GY   G+MEK +E +K+AI  S   W P   ++ +  + LE + D++    +L  L   G
Sbjct: 395 GYKMAGEMEKAVEKWKRAIDVSKPGWRPHQVVLMSCVDYLEGRRDMESLRKILRLLSERG 454

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ 491
           H+S   Y+ LL     AG +   IV+ M K     + E +
Sbjct: 455 HIS---YDQLLYDMNGAG-LSWKIVDAMGKGRYIEEGEVR 490


>gi|297808773|ref|XP_002872270.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318107|gb|EFH48529.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 492

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 263/487 (54%), Gaps = 10/487 (2%)

Query: 10  LAAARVFSTKAAK-ITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHT 68
           +A  R+ +T  A+ ++TLG  ++      R++L + +L     +RS    +++  + GH 
Sbjct: 6   VAKTRLTTTGVARLVSTLGDCSDTSSLAHRNSL-KEILRKNGPRRSVTSLLQERIDSGHA 64

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V   EL  I + L +  RY  AL++ EWME Q +I+    D ++ L+LI K  GL  AE 
Sbjct: 65  VALSELRFISKRLIRSNRYDLALQMIEWMENQKEIQFSVYDISLRLELIIKTHGLKQAEE 124

Query: 129 FFENLPDKMRGPDTCSA----LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           +FE L +         +    LL SYV+ K   E E  MEK++  GFL  P P+N M+ L
Sbjct: 125 YFEKLLNSSASLRVAKSAYLPLLRSYVKKKMVKEGEVFMEKLNGLGFLVTPHPFNEMMKL 184

Query: 185 YISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDP 242
           Y ++GQ +KV  ++  +K N  P +V++YNLW+ AC   +     E  + E+   K ++ 
Sbjct: 185 YEASGQYEKVVMVVSMMKVNKIPRNVLSYNLWMNACCQVSGVTAVETVYREMVGDKSVEV 244

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
            W S  TL ++YIK    EKA   L+  EK   R NR+ Y  L++LY ++G K+ V+R+W
Sbjct: 245 GWSSLCTLANVYIKGGFDEKAKLVLENAEKLLNRSNRLGYFFLITLYASLGDKEGVVRLW 304

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           +    +  +++ A Y CV+SSLVK+G+ E+AE +++EWE+     D RV N+LL AY+  
Sbjct: 305 EASKLVCGRISCANYICVLSSLVKIGDLEEAERVFNEWEAQCFNYDVRVSNVLLGAYMRN 364

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPD 420
            ++  AES + R++ +G  P Y TWE+L  G++K   MEK +    +A   ++   W P 
Sbjct: 365 GEIRKAESLHARVLERGGNPNYKTWEILMEGWVKCQSMEKAIVAMHRAFELMKGCHWRPS 424

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
             ++ A     EE+  I+ A   +  L + G  S  +Y  LLR    A +    I E M+
Sbjct: 425 ESIVMAIAKYFEEEEKIEEANTYIRDLHHLGLASLPLYRLLLRMQEHAQRPAFDIYEMMK 484

Query: 481 KDNVQMD 487
            D + +D
Sbjct: 485 LDKIGID 491


>gi|357137419|ref|XP_003570298.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Brachypodium distachyon]
          Length = 513

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 235/446 (52%), Gaps = 6/446 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           + A  + +W +E   V + +L R V +LR+ +RY HALE+  WM+ + D+ L   D+A  
Sbjct: 57  AVAAAIERWAQERGHVSRPDLRRAVSQLRRARRYDHALEILSWMDSRKDLNLSPLDHAAR 116

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K+ G   AE +++ L +          LLH YV  +   +AE+ M  +   G   
Sbjct: 117 LDLIAKVHGTCHAEEYYKKLRNAACREAASFPLLHCYVAERNVQKAESFMASLQSIGLPV 176

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAF 232
            P  +N ML LY++  Q +K   ++  +K++  P +V++YNLW+ AC S     + +  F
Sbjct: 177 DPHSFNEMLKLYVATCQFEKALAVIDLMKRSNIPRNVLSYNLWMNAC-SVLGVASVQSVF 235

Query: 233 LEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            E+     ++  W ++ TL +++IK  L  KA   L+  E +   + R+ YS +++ Y  
Sbjct: 236 KEMVNDGTVEVGWSTFCTLANIFIKHGLNSKALACLRTAETKLSPRQRLGYSFVMTCYAR 295

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGDPR 350
           +   D V+R+W+   S+  ++  A Y   I   +K+G+  +AE I+  WE+  G   D R
Sbjct: 296 LDDSDGVMRLWEASKSVPGRIPSANYMSTIICSIKVGDIAQAEWIFGSWEAECGRKNDVR 355

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           V N+LL AY+    +E AE  +  ++ KG  P Y TWE+L  G+++  QM+K +   KKA
Sbjct: 356 VSNVLLGAYVRNGWIEKAERLHLHMLEKGAHPNYKTWEILLEGFVQSRQMDKAVNAIKKA 415

Query: 411 IGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
           +   +   W P   L+ A     EE G++D A   +  L+     S  +Y S+LR Y KA
Sbjct: 416 LSLSKSCHWRPPLELVEAIATFFEEHGNVDDANRYIKVLQKFNLTSLPLYKSVLRAYIKA 475

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVL 494
             +P  I E + +D + MD E  +++
Sbjct: 476 DAVPPNISEMIARDQIIMDEEMDRLI 501


>gi|255548417|ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545745|gb|EEF47249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/496 (30%), Positives = 266/496 (53%), Gaps = 12/496 (2%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEE 65
           L A+  + + FST  A +    ++  +      + L  +L +L     S + T+ +   E
Sbjct: 10  LTASCPSRQRFSTAEAAVPPAVVSPRQS-----EKLYHKLSALGATGGSVSRTLNEHIME 64

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G T+ K EL+R +RELRK +R+ HA E+ EWME +  +     D A+ LDLI K RG+++
Sbjct: 65  GKTITKIELSRCIRELRKYRRFDHAFEIMEWME-KRKMNFSYADRAIRLDLIGKARGIAA 123

Query: 126 AENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           AE++F  L    +   T   ALL+ Y +   S +A AL ++M E  FL   LP+N+++++
Sbjct: 124 AEDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKALALFQEMDEKKFLYSSLPFNNLMSM 183

Query: 185 YISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL--KKTKID 241
           Y+  GQ +KVP ++ E+KK   SP   TYN+W+ +    ND +  ++   E+     K +
Sbjct: 184 YMRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGCLNDFQGVDRVLREIVNDGGKDN 243

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
             W +YS L ++Y+K  + EKA + LK++E     +NR AY  L+S+Y   G  +EV R+
Sbjct: 244 LQWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFRNREAYHFLISIYAGTGNSNEVNRV 303

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W  + S F  +N+  Y  ++ +L KL + E     + EWES     D R+ N+ +  ++ 
Sbjct: 304 WGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCTNYDMRIANVAIRVFLQ 363

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVP 419
            +  E AE  ++  + +   P +   E     +LK  Q++  L+  + A     K  W P
Sbjct: 364 HDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHMRAAFSESEKHEWKP 423

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
               + A ++    + D+DGAE L   L++   +++ +Y+ LL+TY  AGK+   + +R+
Sbjct: 424 LQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYIAAGKLAPEMRQRL 483

Query: 480 QKDNVQMDAETQKVLK 495
           ++DN+++  E + +L+
Sbjct: 484 EEDNIEISDELEYLLE 499


>gi|255545872|ref|XP_002513996.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547082|gb|EEF48579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 496

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 253/473 (53%), Gaps = 5/473 (1%)

Query: 28  LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY 87
           L+T  K       L  +++ L     +    ++KW + GH V   +L  I   L K KRY
Sbjct: 18  LSTSPKNGYTNSNLKNQIMKLKSPGLNITSILQKWIDNGHKVTVSQLRYINGLLVKSKRY 77

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP-DKMRGPDTCSAL 146
           KHALE+  WME Q + ++   DYA+ L+LI K+ G+  AE +F  +P D +       AL
Sbjct: 78  KHALEIFTWMETQKNFRMSVSDYALRLELIIKVNGIEEAEEYFNFIPHDSVTRKAASFAL 137

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-T 205
           LH YV+ K   +AEALM K+   G +    P+N M+ LY++  Q +KV  ++ ++K+N  
Sbjct: 138 LHGYVKVKDVVKAEALMMKLYNLGLIVNCYPFNEMMKLYMATSQYEKVALVIDQMKRNKI 197

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAA 264
           + ++++YNLW+++    +     E  + E+     ++  W + +TL ++Y K  + +KA 
Sbjct: 198 ALNLLSYNLWMSSYGEVSKVVKVELVYKEMVNDDNVEVGWSTLATLANIYTKAGIVDKAL 257

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             LK  EK     + + Y  L++ Y+++  K+ V R+W+    +  ++  A Y CV+S L
Sbjct: 258 LALKNAEKILSTSHLLGYFFLMTQYSSLKNKEGVQRLWEACKGVNGRITCANYMCVLSCL 317

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           VK+G+  +AE ++ +WE      D RV N+LL AY+ +  +  AES +   + +G  P Y
Sbjct: 318 VKVGDLLEAEKVFRDWELNCRKYDIRVSNVLLGAYVRKGLMNKAESLHLHTLDRGGCPNY 377

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEH 442
            T E+L  G++K  +M+K ++   +AI  +    W P H +I +    LE   + + A H
Sbjct: 378 KTLEILMEGWVKSQKMDKAIDAMTQAISMLEHCHWRPSHGIIMSIAEHLERNRNFEDANH 437

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            +  + + G  S  +Y  LLR +  A +    I++ M+KD +++D ET  +++
Sbjct: 438 FIQVIHHLGVASLPLYKVLLRMHLHAQRAAFDILKMMEKDKIELDDETSALVQ 490


>gi|115473169|ref|NP_001060183.1| Os07g0598500 [Oryza sativa Japonica Group]
 gi|34393591|dbj|BAC83218.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113611719|dbj|BAF22097.1| Os07g0598500 [Oryza sativa Japonica Group]
 gi|215706491|dbj|BAG93347.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 257/467 (55%), Gaps = 7/467 (1%)

Query: 4   RSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWK 63
           RS G+T A  R  +  ++  +  G +  +K A    +L   L  L +        + +W 
Sbjct: 29  RSHGSTPALIRAAAAASSPASPRGHSGGRKPAR-PPSLQSTLWPLGHPGTLLVPEIERWA 87

Query: 64  -EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
            + G+ +   EL RIV+ELRK +R++ ALEV EWM  +  +K +  D+AVHLDLI +I G
Sbjct: 88  AKPGNRLRHVELERIVKELRKRRRHRQALEVSEWMNAKGHVKFLPKDHAVHLDLIGEIHG 147

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
            S+AE +F NLPDK +      ALL+ Y +     ++ A  +KM E GF+   LPYN+++
Sbjct: 148 SSAAETYFNNLPDKDKTEKPYGALLNCYTRELLVEKSLAHFQKMKELGFVFSTLPYNNIM 207

Query: 183 NLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKI 240
            LY + GQ +KVP ++ E+K N   PD  +Y + + +  ++ D    E    E++ + KI
Sbjct: 208 GLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGTRADFFGMENTLEEMECEPKI 267

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             DW +Y+ + S YIK  + EKA + LK+ E +   K+  +Y+ L+SLY ++G K EV R
Sbjct: 268 VVDWNTYAVVASNYIKGNIREKAFSALKKAEAKINIKDSDSYNHLISLYGHLGDKSEVNR 327

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W   MS   +  + +YT +++ LVKL E E+AE +  EWES     D +VPN+LL  Y 
Sbjct: 328 LWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAEVLLKEWESSGNAFDFQVPNVLLTGYR 387

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKW 417
            ++ L+ AE+  +  + KG  P  T+W ++  GY +KG   K  E  K A+        W
Sbjct: 388 QKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGYAEKGDAAKAYELTKNALCVYAPNTGW 447

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
           +P   +I      L ++GD++  E  +  L+ A  +++++ ++L R 
Sbjct: 448 IPRPGMIEMILKYLGDEGDVEEVEIFVDLLKVAVPLNSDMTDALSRA 494


>gi|388517969|gb|AFK47046.1| unknown [Lotus japonicus]
          Length = 496

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 246/440 (55%), Gaps = 12/440 (2%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
           A  + +W E G  + + +L R++  L   +R+ HAL+V EWM  + +  L SG  A  + 
Sbjct: 51  APILNQWVEGGGDITQIQLQRLITRLAYFRRFTHALQVSEWMSNERNYDLSSGLIAKRIH 110

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           LISK+ GL  AE+FF+ +PD  RG    ++LL  Y ++K   EAEA+M+K+ E   +   
Sbjct: 111 LISKVHGLKKAEDFFQGIPDDKRGFKIYASLLSCYAEHKSLEEAEAIMKKIKELRPMHLT 170

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           + YN +L LY   G+ +K+ +++QE+K+N   +  T+ + L A  +  D E  EK  +++
Sbjct: 171 VCYNILLKLYAQKGKYEKLDRLMQEMKENDLCNGATFTIRLNAYVAAKDVEGMEKLLMQM 230

Query: 236 KKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYT 290
              + DP    DW +YST  + Y+K    EKA   LK+ E+    +K R+AY SL S Y 
Sbjct: 231 ---EADPMATVDWYTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLRLAYESLQSTYA 287

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +G KDEV R+W ++ +L    N + Y C++SSL+KL +F+ AE I  EWES     D R
Sbjct: 288 AIGNKDEVYRLWNRIKNLQNCWN-SSYICMLSSLLKLDDFDGAEKILAEWESEHKNFDTR 346

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           +PN+++ AY  R  L+ AE++  +L+  G K   ++W+ +  GY     MEK ++  KKA
Sbjct: 347 IPNLMITAYCKRGLLDKAEAYIQKLLDSGKKLDGSSWDRMAAGYHMDNDMEKAVQTMKKA 406

Query: 411 IGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
           I + R  W P    + A    L+E+ D++ A  +L   +  GH+    Y+ L+ +YA  G
Sbjct: 407 ILANRPGWRPSPSTLVACITYLKEKLDLESALEILKLCKEDGHIKITTYDGLV-SYAH-G 464

Query: 470 KMPLIIVERMQKDNVQMDAE 489
           ++P      + K + QMD +
Sbjct: 465 EIPDKEALDLMKRDYQMDGK 484


>gi|358344191|ref|XP_003636175.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
 gi|355502110|gb|AES83313.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
          Length = 790

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/419 (33%), Positives = 243/419 (57%), Gaps = 21/419 (5%)

Query: 80  ELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR 138
           +  K+   +H L+V +WM  + +  ++ + D A+ LDLI+++ G+SSAE+FF NL + ++
Sbjct: 284 DFMKVMTNEHVLQVYDWMNNRPERFRISASDVAIQLDLIARVHGVSSAESFFLNLTNDLK 343

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
              T  ALL++YV ++   +AE+L+E M    +L   LP+N M+ L ++    DKV  ++
Sbjct: 344 DKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLTHSLPFNLMMTLSMNLKDYDKVDMLV 403

Query: 199 QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIK 256
            E+K KN   D+ TYN+WL++C SQ   E  E+ F + LK   I P+W ++ST+ ++YIK
Sbjct: 404 SEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMLKDPTIIPNWSTFSTMAAMYIK 463

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           MEL EKA   LK+ E R   +++V +  LLSLY ++G KDEV R+W    S+F  + +  
Sbjct: 464 MELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLG 523

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  VISS V++ + E+AE +Y+EW S+  + D R+ N+L++ Y+ + + +   SF+  + 
Sbjct: 524 YHAVISSFVRMDDIERAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMS 583

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
             G  P  TTWELL+ G++ + ++ + L C +KA             +T+     + + +
Sbjct: 584 EGGGCPNSTTWELLSEGHIAEKRVSEALSCLEKA------------FMTSDSKSWKPKAN 631

Query: 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQK-DNVQMDAETQKVL 494
            + AE L+  LR +G+ + E Y +++     + +      ER+   D+  MD +  +VL
Sbjct: 632 KNCAEVLIELLRKSGYHNDEAYAAIISKDEPSNR-----TERIDDVDSENMDDDDSQVL 685


>gi|15225409|ref|NP_179663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206559|sp|Q9SKU6.1|PP166_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g20710, mitochondrial; Flags: Precursor
 gi|4454477|gb|AAD20924.1| hypothetical protein [Arabidopsis thaliana]
 gi|51315392|gb|AAT99801.1| At2g20710 [Arabidopsis thaliana]
 gi|330251965|gb|AEC07059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 490

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 244/450 (54%), Gaps = 15/450 (3%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL RR+        S    +  W ++G+ V   EL+ I++ LRK  R+ HAL++ +WM 
Sbjct: 38  DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
                ++  GD A+ LDLI+K+ GL  AE FFE +P + R      ALL+ Y   K   +
Sbjct: 98  EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLA 217
           AE + ++M E GFLK  LPYN MLNLY+  G+   V ++L+E++  T  PD+ T N  L 
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217

Query: 218 ACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-C 275
           A +  +D E  EK  +  +  + +  DW +Y+   + YIK  L EKA   L++ E+    
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEFEK 332
           +K + AY  L+S Y   G K+EV R+W    SL+ +++   +  Y  VIS+L+K+ + E+
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLW----SLYKELDGFYNTGYISVISALLKMDDIEE 333

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
            E I +EWE+     D R+P++L+  Y  +  +E AE   N LV K      +TWE L  
Sbjct: 334 VEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLAL 393

Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           GY   G+MEK +E +K+AI  S   W P   ++ +  + LE Q D++G   +L  L   G
Sbjct: 394 GYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERG 453

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
           H+S   Y+ LL     AG +   IV+ M K
Sbjct: 454 HIS---YDQLLYDMNGAG-LSWKIVDAMGK 479


>gi|125532539|gb|EAY79104.1| hypothetical protein OsI_34210 [Oryza sativa Indica Group]
          Length = 513

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 246/463 (53%), Gaps = 7/463 (1%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G D+L RR+         A +  + W  E H V K EL  +V+ LR+ +R+  ALE+  W
Sbjct: 48  GEDSLFRRVAGADPRIPLAPVLEQWWLAEEHPVSKPELQSLVKYLRRRRRFSQALELSMW 107

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +  + L  GD A  L+LISK+ GL  A  +F+ +P+++R      +LL  Y + ++ 
Sbjct: 108 MTERRHLHLSPGDVAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYTEAERV 167

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
            +AE L E M   G +     YN M+NLY   GQ+++V  M + +++    PD+ T +  
Sbjct: 168 EKAEELFENMRGMG-MANSYAYNAMMNLYSQIGQVERVHSMYKSMEEGGIVPDIFTIDNL 226

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-T 274
           ++A A   D E  EK  LE         W S++ +  +++K  + E+A    +E EKR T
Sbjct: 227 VSAYADVEDVEAIEKV-LEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRIT 285

Query: 275 CRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFEK 332
            RK+ RVAY  LL++Y ++    EV RIW    S + A   +  Y C IS L+K+ +   
Sbjct: 286 ARKDGRVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVG 345

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE  Y+EWES     D R+ NILL AY     +E AE+  ++ + KG  P   TW  L  
Sbjct: 346 AEKAYEEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTPFSNTWYKLAG 405

Query: 393 GYLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           GY K GQ  K  +  KKA+ S   +W PD   +  + N   EQ +++ AE +   L+   
Sbjct: 406 GYFKVGQASKAADLTKKALASASNEWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLV 465

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++ ++Y+ LL+TY  AG+    +++RM+KD ++ D ET K+L
Sbjct: 466 PLTRDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEETDKIL 508


>gi|242039187|ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
 gi|241920842|gb|EER93986.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
          Length = 510

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 244/459 (53%), Gaps = 6/459 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           D L RR++++       +  +++W +EGHTV K+ +  IV++L  L+R+ HALE+  WM 
Sbjct: 43  DNLYRRIMNVGRPSIPLSPVLKQWDQEGHTVKKFVIQAIVKKLVGLRRFAHALELSFWMT 102

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            +  + L +GD A  LDLISK+ GL  A  +F  +P ++R P    +LL  YV+ K   +
Sbjct: 103 DRRHLHLTAGDVAYRLDLISKVHGLEKAVEYFGMVPKRLRMPQCYGSLLKCYVEAKAVDK 162

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           AE    KM E G +K    Y  M+ LY+  GQL++V  M Q++ +K   PD  +    LA
Sbjct: 163 AEEHFAKMQEMG-MKSSYTYTSMMKLYLETGQLERVHAMFQDMEEKGVKPDTFSVESMLA 221

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
           A  +  D E   K   +    +    W   +   SL++K  +  +A   L E E+R   K
Sbjct: 222 AYIAAEDVEGVGKVLDKANPHEKLVKWHGQALAASLFMKSGMQVRAVMALLEAERRISPK 281

Query: 278 -NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +R+AY+ LL  YT++G   EV RIW    S     N   Y   IS+L+K+ + + AE  
Sbjct: 282 SSRIAYAFLLKTYTDLGMYPEVGRIWSVYKSKVPPSNTM-YLSRISALLKMNDIDGAEAT 340

Query: 337 YDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
             EWE++S    D R+ N+++ AY     +E A +  +  + KG  P   TW  L  G+ 
Sbjct: 341 LKEWETVSLRYHDFRLINLMVDAYCREGLVEKAVALVDDAIKKGRTPYANTWYKLAGGFF 400

Query: 396 KKGQMEKVLECFKKAIGSVR-KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           K G++ K ++  +KA+ S    W PD   +  +      Q D++ AE +   L+  G ++
Sbjct: 401 KTGEVSKAVDMTRKALESATPPWKPDLTNVLMSLEHFMNQKDVEAAEEIASMLQKLGPLT 460

Query: 455 TEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKV 493
            E+Y+ LL+TY +AGK    ++ERM+KD ++ D ET+++
Sbjct: 461 KEVYHCLLKTYVRAGKPVSDLLERMKKDGLEADEETERM 499


>gi|226502666|ref|NP_001140872.1| uncharacterized protein LOC100272948 [Zea mays]
 gi|194701536|gb|ACF84852.1| unknown [Zea mays]
 gi|413924212|gb|AFW64144.1| hypothetical protein ZEAMMB73_253479 [Zea mays]
          Length = 525

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 243/458 (53%), Gaps = 12/458 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           +AA  + +W ++   V + EL R +  LR+ +RY+ ALE+  WME    ++L S D+A  
Sbjct: 69  TAAAAVERWAQDRVHVSQPELRRAIGMLRRERRYEQALEIFSWMESCSSLRLSSWDHAAR 128

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSA----LLHSYVQNKKSAEAEALMEKMSEC 169
           LDLI+K    S AE ++    +K++ P T  A    LLH YV  +   +AE  M ++   
Sbjct: 129 LDLIAKAYSTSQAEEYY----NKLQSPATRQAASFPLLHCYVMERDVQKAETFMAQLQSH 184

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETA 228
           G    P  +N ++ LY++  Q +KV  ++  +K+N    +V++YNLW+ ACA  +  ++ 
Sbjct: 185 GLPVDPHSFNEIMKLYVATCQYEKVLSVIDLMKRNNIHRNVLSYNLWMNACAEVSGVDSV 244

Query: 229 EKAF-LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           +  F + L    +   W +Y TL +++ K  L  +A   L + E +     R+ YS +++
Sbjct: 245 QSVFQVMLNDETVKVGWSTYCTLANIFRKNGLNNEAQACLVKAEAKLSPAGRLGYSFVMT 304

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y  +   D V+R+W+   S+  ++  A Y   +S  +K+G+  +AE I+ +WE+     
Sbjct: 305 CYAALNDSDGVMRMWEASKSVPGRIPTAYYMAAMSCSIKVGDISQAECIFGKWEAGCRKH 364

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D RV N+LL AY+    +E AE  +  ++ KG  P Y TWE+L  GY++  QM+K + C 
Sbjct: 365 DVRVSNVLLGAYVRNRWIEKAERLHLHMLEKGACPNYKTWEILMEGYVQSRQMDKAVGCM 424

Query: 408 KKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
           KK +  ++   W P   L+ A     EEQG  D A   +  L+     S  +Y SL+R Y
Sbjct: 425 KKGLSLLKSCHWRPPVELMEAIGKHFEEQGSADDAYRYIKVLQRFNLTSLPLYKSLIRAY 484

Query: 466 AKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVS 503
             A  +P  ++E + KD + MD E  +++ I  ++ ++
Sbjct: 485 INADVVPPNVLEMIAKDQIDMDEEMDRLIIIAGKIDIT 522


>gi|357446577|ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 495

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 250/451 (55%), Gaps = 6/451 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S A  +  W  +G+ V   EL RIVR+LRK  R+  AL+V EWM           ++AVH
Sbjct: 43  SVAPQLDDWVYKGNKVSVGELQRIVRDLRKRSRFTQALQVSEWMNKIGVCIFSPVEHAVH 102

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDL  ++ G  +AE +F +L D  R   T  ALL+ YV+ ++  ++ + ++KM E GF  
Sbjct: 103 LDLTGRVHGFYAAETYFNSLKDIERNEKTHGALLNCYVRQRQVDKSLSHLKKMKELGFAL 162

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
             L YN+++ LY + GQ +KV  +  E+K+N   PD  +Y + + +   ++D +      
Sbjct: 163 SSLTYNNIMCLYTNIGQHEKVSDVFNEMKENHVLPDNFSYRICIGSYGVRSDIDGMNAIL 222

Query: 233 LELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            E++ +  I  DW +YS + + YIK EL  +A   L++ EKR   K+   Y+ L+SLY  
Sbjct: 223 KEMESQPHIVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYAR 282

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G K+EVLR+W    S   +  + ++  ++ SLVKL EF++A+ I  EWE      D  V
Sbjct: 283 LGKKNEVLRLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEWEFSGNCYDYGV 342

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           PN+++  Y  ++  E AE+    +  K      ++W L+   YL KG+MEK LEC K A+
Sbjct: 343 PNVVVVGYSEKDFPEKAEAILQDIWKKRKYTDTSSWILVADRYLLKGEMEKALECLKTAV 402

Query: 412 ---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
                 +K  P+HR+I++ Y+ + +   ++ AE  LV L      +  +Y+SLL+ Y +A
Sbjct: 403 CLYPENKKRKPNHRVISSIYSWIGDNASVEDAE-ALVRLLKKFQKNRHMYHSLLKAYVRA 461

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
            K    +++RM++DN+    +T +++K+  E
Sbjct: 462 DKEVDGVLDRMKEDNIDETGKTAEIVKMKKE 492


>gi|449438486|ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
 gi|449479168|ref|XP_004155524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 500

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 246/459 (53%), Gaps = 7/459 (1%)

Query: 41  LGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           L ++++++   K S    + KW  +G  + K EL  +V  ++  +R+ HALE+ +WM  +
Sbjct: 38  LRQKIVNIRAPKISVVPVLEKWVGDGRAIGKPELQYLVHLMKDSRRFNHALEISQWMTDR 97

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160
             + L   D AV LDLI  + GL  AEN+F ++  +++  +   ALL  YV+ K   +AE
Sbjct: 98  RYLSLSPSDAAVRLDLIHSVHGLEHAENYFNSISIRLKTSNVYGALLGCYVREKSLEKAE 157

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAAC 219
           A+M++M + G       YN ++NLY   GQ DK+  +++E+K    P D+ +     AA 
Sbjct: 158 AIMQEMRKMGIATTSFAYNVLINLYAQIGQHDKIDLLIEEMKTKGIPQDIYSIRNLCAAY 217

Query: 220 ASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRK 277
            ++ D    EK    +++ +++  DW  YS   + Y+   L  +A + LK+ E++     
Sbjct: 218 VAKADISGMEKILKRIEEDSELKADWTIYSIAANGYLTAGLETEALSMLKKTEEKVRPNT 277

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N+ A+  LLSLY   G+K+EV R+W     L  K     Y  +I+SL KL + E AE I+
Sbjct: 278 NKFAFKFLLSLYERTGHKNEVYRVWNTFKPL-TKETCVPYALMITSLAKLDDIEGAERIF 336

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            EWES     D RV N LL AY  +  L+ AES  N+ V +   P  +TW +L  GY + 
Sbjct: 337 QEWESKCTVYDFRVLNRLLVAYCRKGLLDKAESVVNQAVVERT-PFRSTWSILATGYAEY 395

Query: 398 GQMEKVLECFKKAIGSVRK-WVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           G M K +E  KKAI   R+ W P    ++ A  + LE+QGD +  + ++   +++G V  
Sbjct: 396 GHMSKAVEMLKKAILVGRQNWKPKQGDILEACLDYLEKQGDAETMDEIVRLCKSSGTVMK 455

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           E+Y  LLRT    GK  + I+E+M+ D    D E  K+L
Sbjct: 456 EMYYRLLRTSIAGGKPVISILEQMKMDGFAADEEVDKIL 494


>gi|224121672|ref|XP_002330624.1| predicted protein [Populus trichocarpa]
 gi|222872228|gb|EEF09359.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 249/459 (54%), Gaps = 13/459 (2%)

Query: 40  TLGRRLLSLVYAKRSAAI-TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           +L RR+ S+V       I  + KW +EG  V   +L   +R+LRK+ R+ HAL++ +WM 
Sbjct: 34  SLNRRI-SMVEDPMVPVIPVIEKWVQEGQVVTNSDLKHFIRKLRKIHRFSHALQISQWMS 92

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            Q    L  GD AV LDLISK+ GL  A  +F ++P+ +RG +   ALL+ Y   K   E
Sbjct: 93  DQRGHNLSPGDVAVRLDLISKVHGLEQAVTYFNSVPESLRGLEVYGALLNCYAHYKHLEE 152

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           AEA M KM E GF++  L YN MLNLY   G+ +K+  ++QE++K       +TY + L 
Sbjct: 153 AEATMRKMREMGFVRNVLSYNVMLNLYYQMGKYEKIQVLMQEMEKWGICFSNITYKILLN 212

Query: 218 ACASQNDKETAEKAFLELKKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           A  + ++ E  +K  +   K + DP    DW +Y    + Y+K  L +K  T L   E+ 
Sbjct: 213 AYVATSNIEEIKKILM---KMEADPLVSIDWYAYVVAANGYLKAGLIDKTLTMLWRSEQL 269

Query: 274 TCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
              K+ R A  +LLSLYT +G K++V R+W    +    +N + Y C+I+SL+KL + + 
Sbjct: 270 ISGKSARFACETLLSLYTAVGNKEQVYRVWNLYKTKGRSLNSS-YLCMINSLLKLDDVDG 328

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE I++EW SI    D R+PN++++AY  +   E AE+F  ++V  GIK   +T + L  
Sbjct: 329 AERIWEEWVSIVKFFDIRIPNVMVSAYSKKGLWEKAEAFVGKIVASGIKIEASTLDRLAT 388

Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           GY  +GQM K  E  KKAI  S   W P+   + A    L+ + D+   E  L  L+   
Sbjct: 389 GYHVRGQMLKASETIKKAISISQPGWKPNVYTLAACLEYLKGREDVKKIEDPLKILKEHC 448

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAET 490
           H+S+  Y+ L  +      +    ++ M+ ++  ++ ET
Sbjct: 449 HLSSVSYDRLNSSIIDKENLCARALDHMEGEDQALNGET 487


>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa]
 gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]
          Length = 505

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 239/441 (54%), Gaps = 12/441 (2%)

Query: 30  TEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
           T+K      + L  R+ SL   + + ++ +  W  EG  V+K +L   ++ELR  KRY H
Sbjct: 50  TKKPWTDAMNVLYNRISSLADQRITISLFLNHWVLEGQPVNKNQLREFIKELRFHKRYAH 109

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           ALE+  WM      +L S D AV LDLISK+ G+  A+  F N P  ++     SALL+ 
Sbjct: 110 ALEISTWMTDSGYFELASQDVAVQLDLISKVHGIEQAQKLFNNTPQHLKVLKVYSALLNC 169

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPD 208
           Y + K   +AE+++++M   GF    L YN +LN Y   G  DK+  ++QE+++N    D
Sbjct: 170 YAKAKLVEKAESVVQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCD 229

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDP----DWISYSTLTSLYIKMELPEKAA 264
              +++ L+A AS +D    EK    L K + DP    DW SY+     YIK+ L +KA 
Sbjct: 230 KFAHSIQLSAYASVSDIVGIEKT---LAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKAL 286

Query: 265 TTLKEMEKRTCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
             L++ E+    K R  AY SL++LY   G  +EVLRIW ++     K+    Y  +I+S
Sbjct: 287 EMLEKSERLVTGKRRGTAYDSLITLYAATGKTNEVLRIW-ELYKKNEKVYKEAYISIITS 345

Query: 324 LVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           L+KL +FE AE I++EWE  + +  D  +PN L+ AY  +  +E AE+  +R ++KG +P
Sbjct: 346 LLKLDDFENAEKIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAISKGGEP 405

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
              TW  L  GYL+ GQ  K +E  KKA + S R W P + ++      L+ +GD+    
Sbjct: 406 NAKTWYHLATGYLQNGQTLKAVEAMKKAVVVSGRMWKPSNEILANCLGYLKVEGDLGKLT 465

Query: 442 HLLVTLRNAGHVSTEIYNSLL 462
           + +  LR+   +S +I   LL
Sbjct: 466 NFMDLLRDNDIISLDIQERLL 486


>gi|359485373|ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 461

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 230/435 (52%), Gaps = 7/435 (1%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           +L  R+ ++   K S +  + +W EEG TV K +L  +VR ++  +R+ HALE+ +WM  
Sbjct: 23  SLYDRIQAVRDPKASISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMTD 82

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
           +    L   D A+ LDLIS + G   AE++F N+P+ ++      ALL  YV+ K   +A
Sbjct: 83  RRYFTLTPSDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSVEKA 142

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAA 218
           EA M+KM E  F     PYN ++NLY   G   K+  ++QE++    P D  T    + A
Sbjct: 143 EATMQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVA 202

Query: 219 CASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
             + +D    EK    +++   I  DW  YS   S Y+K+ L +KA   LK++E      
Sbjct: 203 YVAASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHL 262

Query: 278 NRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            R+ A+  LLSLY   G+K E+ R+W      +       Y+C+I+ L KL + E AE I
Sbjct: 263 ERLSAFKFLLSLYARTGHKQELYRVWNLYKPSYEY--PEAYSCMITCLTKLDDIEGAEKI 320

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + EWE      D RV N LL+AY  R   + AES  N+++ + + P  +TW +L  GY++
Sbjct: 321 FQEWECECTMYDFRVLNRLLSAYCKRCLFDKAESLVNKVIEERM-PYASTWNILAKGYVE 379

Query: 397 KGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             QM K +E  KKAI   RK W P+  ++ A    LE QG+++  E +    +N G    
Sbjct: 380 DKQMPKAVEMLKKAISVGRKGWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDG 439

Query: 456 EIYNSLLRTYAKAGK 470
           +I++ LLRT A   K
Sbjct: 440 DIHHRLLRTSAAGEK 454


>gi|326530906|dbj|BAK01251.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 511

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 240/441 (54%), Gaps = 19/441 (4%)

Query: 59  MRKWKEE-GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           + +W ++ G+ +   EL RIV+ELRK +R++ ALEV EWM  +  ++ +  DYAVHLDLI
Sbjct: 77  IERWADKPGNRLRPVELERIVKELRKRRRHRQALEVSEWMSAKGHVRFLPKDYAVHLDLI 136

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
            ++ G+ +AE +F  LPDK +      ALL+ Y +      + A  +KM E GF+   LP
Sbjct: 137 GQVHGIGAAEAYFNTLPDKDKTEKPYGALLNCYTRELMVDGSLAHFQKMKELGFVFSSLP 196

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN+++ LY + GQ +KVP ++ E+K     PD  +Y + + +  ++ D    E    +++
Sbjct: 197 YNNLMGLYTNIGQHEKVPSVIAEMKGSGIMPDNFSYRICINSYGTRADFFGMENTLEDME 256

Query: 237 -KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            + +I  DW +Y+ + S YIK  L EKA + LK+ E +   K+   Y+ L+SLY  +G K
Sbjct: 257 CEPQIVVDWNTYAVVASNYIKGNLREKAISALKKAEAKIDIKDSDTYNHLISLYGQLGDK 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            E+ R+W   MS   +  + +YT +++ LV+L E E+AE +  EWES     D  VPN+L
Sbjct: 317 SEMRRLWGLQMSNCKRHINKDYTTMLAMLVRLDEIEEAEALLKEWESSENAFDFHVPNVL 376

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG--- 412
           L  Y +++ L+ AE+  +  + KG  P  T+W ++  GY +KG   K  E  K A+    
Sbjct: 377 LTGYRHKDMLDKAEALLDDFLKKGKMPPSTSWAIVAIGYAEKGDCAKAYELIKNALCVYV 436

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
               W+P   +I      L ++GD+   E  +  L+ A  +++ + ++L R         
Sbjct: 437 PRSGWIPRPAMIEMILKYLGDEGDLKDVETFVQLLQAAMPMNSHMTDALSRA-------- 488

Query: 473 LIIVERMQKDNVQMDAETQKV 493
                RM+++    DAE + +
Sbjct: 489 -----RMREEKKSGDAEKEAL 504


>gi|297799892|ref|XP_002867830.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313666|gb|EFH44089.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 492

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/502 (30%), Positives = 258/502 (51%), Gaps = 21/502 (4%)

Query: 3   LRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKW 62
           L+   ATL A+R + T   K TTL                 ++  L   K S    ++ W
Sbjct: 4   LKRFPATLIASRYYYTNRVKKTTLY---------------SKISPLGDPKSSVYPELQNW 48

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
            + G  V   EL RIV +LR+ KR+ HALEV +WM           ++AVHLDLI ++ G
Sbjct: 49  VQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYG 108

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
             +AE +FENL ++ +   T  ALL+ YV+ +   ++    +KM E GF+   L YN+++
Sbjct: 109 FVTAEEYFENLKEQYKNEKTYGALLNCYVRQQNVEKSLLHFQKMKEMGFVSSSLTYNNIM 168

Query: 183 NLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKI 240
            LY + GQ +KVP +L E+K+ N +PD  ++ + + A  + +D E       ++ ++   
Sbjct: 169 CLYTNIGQHEKVPGVLDEMKEENVAPDNYSFRICINAFGAMSDLERIGGILRDMERRPDF 228

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             DW +Y+     YI     ++A   LK  E R  +K+   Y+ L++LY  +G K EVLR
Sbjct: 229 TMDWNTYAVAAKFYIDGGDCDRAVELLKMSEYRLEKKDGEGYNHLITLYARLGNKIEVLR 288

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W+       +  + +Y  V+ SL+K+   ++AE +  EWES     D RVPN ++  Y 
Sbjct: 289 LWELEKEACKRRINQDYLTVLQSLMKIDGLKEAEVVLTEWESSGNCYDFRVPNTVIRGYT 348

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRKW 417
            ++  E AE+    L  +G      +W L+   Y +KG +    +C K A+G     RKW
Sbjct: 349 GKSMEEKAEAMLEDLARRGKTTTPESWGLVATAYAEKGALGNAFKCMKTALGIEVENRKW 408

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-IIV 476
            P  +L+T+  + L  +G +   E  + +LRN   V+ ++Y++L++   + G   +  ++
Sbjct: 409 RPGLKLVTSVLSWLGGEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGSNIDTLL 468

Query: 477 ERMQKDNVQMDAETQKVLKITS 498
           +RM+ D ++ D ET  +L   S
Sbjct: 469 KRMKDDQIETDEETTVILSTRS 490


>gi|22165052|gb|AAM93669.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432900|gb|AAP54476.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125575303|gb|EAZ16587.1| hypothetical protein OsJ_32059 [Oryza sativa Japonica Group]
          Length = 545

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 246/461 (53%), Gaps = 6/461 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKW-KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           D+L RR+ +    +   +  + +W   E   + K E+  I++ L + +R+  AL++  WM
Sbjct: 81  DSLFRRVAAAADPRLPLSPVLEQWCLAEERPIAKPEIQSIIKYLCRRRRFSQALQLSMWM 140

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +  + L  GD A  L+LI+K+ GL  A  +F+++PD+++      +LL  Y + K   
Sbjct: 141 TERLHLHLSPGDVAYRLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEAKCVE 200

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +AE L EKM   G +     YN M+ LY+ +GQ+++V  M + ++++    DV T +  +
Sbjct: 201 KAEELFEKMRGMG-MASSYAYNVMMRLYLQDGQVERVHSMHRTMEESGIVADVFTTDTLV 259

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
           AA     D E  EK   +         W SY+T+  + ++  + E+A    +E EK+  +
Sbjct: 260 AAYVVAEDIEAIEKVLEKADTCNDLMTWHSYATIGKVLMQSGMEERALQAFQESEKKIAK 319

Query: 277 K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFEKAE 334
           K NRVAY  LL++Y ++G   EV RIW    S + A   ++ Y C IS L+K+ +   AE
Sbjct: 320 KSNRVAYGFLLTMYADLGMNSEVDRIWDVYKSKVPASACNSMYMCRISVLLKMNDIVGAE 379

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
             Y+EWES     D R+ N+LL AY     +E AE+  ++ V KG  P   TW  L  GY
Sbjct: 380 KAYEEWESKHVYHDSRLINLLLTAYCKEGLMEKAEALVDQFVKKGRTPFGNTWYKLAGGY 439

Query: 395 LKKGQMEKVLECFKKAIGS-VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            K GQ  K  +  KKA+ S   +W PD   +  + N   EQ +++ AE +   L+     
Sbjct: 440 FKVGQASKAADLTKKALASGSNEWTPDLTNVLMSLNYFAEQKNVEAAEEMASLLQRLITP 499

Query: 454 STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           + +IY+ LL+TY  AGK    +++RM+KD ++ D ET+K+L
Sbjct: 500 TRDIYHGLLKTYVNAGKPVSDLLDRMKKDGMEADEETEKIL 540


>gi|115436124|ref|NP_001042820.1| Os01g0301000 [Oryza sativa Japonica Group]
 gi|57899052|dbj|BAD87826.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113532351|dbj|BAF04734.1| Os01g0301000 [Oryza sativa Japonica Group]
 gi|215694668|dbj|BAG89859.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215706899|dbj|BAG93359.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 522

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 246/460 (53%), Gaps = 4/460 (0%)

Query: 40  TLGRRLLSLVYA-KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           +L RRL +L  A + S +  M KW  EG      +L + V+ELRK KR+ HALE+ EWM 
Sbjct: 56  SLYRRLSALGGAGEGSVSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMV 115

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
               + +   ++A+ LDLI K+RG+ +AE +F  LPD  +   T  ALL+ Y   K   +
Sbjct: 116 NTKGMNMSYTNHAIRLDLIYKVRGIEAAEQYFAGLPDPGKNHKTYGALLNCYCSAKMEDK 175

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A  +  KM E G     LP N++++LY+  GQ  KV  + +E+K KN  PD +T  L ++
Sbjct: 176 ATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMS 235

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CR 276
           + A+ N  +T  +   E+++ K+   W +YSTL SLY+   + E+A + LK++E     +
Sbjct: 236 SYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQ 295

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
             R  +  L+SLY ++G   EV R+W  + + F K+ +  Y  ++ +L KL + ++ + I
Sbjct: 296 AGRQPFDFLMSLYASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQI 355

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           Y++WES     D R+ N++  A++     + AE  + ++  KG +    T EL    Y+ 
Sbjct: 356 YEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMG 415

Query: 397 KGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           KG M   L   +      RK    D   I+      EE  D++GAE  L  LR +G +  
Sbjct: 416 KGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDG 475

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           + Y SLLRTY  AGK    I + +++D +++     K+LK
Sbjct: 476 KAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLK 515


>gi|242096946|ref|XP_002438963.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
 gi|241917186|gb|EER90330.1| hypothetical protein SORBIDRAFT_10g029040 [Sorghum bicolor]
          Length = 502

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 234/413 (56%), Gaps = 6/413 (1%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           + E H +   +L RIV+ELR  +R++ ALEV EWM L+  +K +  D+AVHLDLI  I G
Sbjct: 76  RPENH-LRDVDLRRIVKELRTRRRHRQALEVSEWMNLKGHVKFLPKDHAVHLDLIGHIHG 134

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           + +AE +F NL DK +      ALL+ Y + +   +A A  +KM E GF+   LPYN+++
Sbjct: 135 VGAAETYFNNLSDKDKTEKPYGALLNCYTRERLVDKALAHFQKMKELGFVFTALPYNNLM 194

Query: 183 NLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKI 240
           +LY +  Q ++VP ++ E+K N   PD  +Y + + +  ++ D    E    E++ + +I
Sbjct: 195 SLYTNIEQHERVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTLEEMECEPQI 254

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             DW +Y+ + S YIK +L EKA + LK+ E +   K+  AY  L+SLY ++G K EV R
Sbjct: 255 VVDWNTYTVVASQYIKGDLREKAYSALKKAEAKMGIKDLAAYRHLISLYGHLGDKSEVKR 314

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W   MS   +  + +YT +++ LVKL E  +AE++  EWE+     D +VPN+LL  Y 
Sbjct: 315 LWAVQMSNCQRHLNTDYTNILAVLVKLDEIAEAEDLLKEWETSKNEFDFKVPNVLLTWYC 374

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKW 417
            +  L+ AE+  +  + KG  P  T+WE++  GY +KG + +  E  K A+        W
Sbjct: 375 QKGLLDKAEALLDGFLIKGKMPPSTSWEIVASGYTEKGDVARAYELTKNALYMYAPNSGW 434

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           VP+  +I      L ++ ++   E  +  L+ A  +++++  +L R  ++  K
Sbjct: 435 VPEPSMIEMILKYLGDEREVKDVEAFIDLLKVAVPMNSDMTEALSRARSREEK 487


>gi|195613552|gb|ACG28606.1| tetratricopeptide-like helical [Zea mays]
 gi|414870858|tpg|DAA49415.1| TPA: tetratricopeptide-like helical [Zea mays]
          Length = 517

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 241/460 (52%), Gaps = 6/460 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           D L RR++++       +  + +W +EGHT  K+ +  IV++L  L+R+ HALE+  WM 
Sbjct: 40  DELYRRIMNVGRPSIPLSPVLEQWNQEGHTAKKFVIQAIVKKLVGLRRFAHALELSFWMT 99

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            +  + L  GD A  LDLISK+ GL  A  +F  +P ++R P    +LL  YV+ K   +
Sbjct: 100 DRRHLHLSVGDVAYRLDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKAVDK 159

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           AE    KM E G +     Y  M+ LY+  GQL++V  M Q++ +K   PD  +    LA
Sbjct: 160 AEEHFAKMQEMG-MTSSYAYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEAMLA 218

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
           A  +  D +   K   +    +    W  +++  SL++K  +   A   L E E+R   K
Sbjct: 219 AYIAAEDVQGVGKVLDKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRISPK 278

Query: 278 -NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +R+AY+ LL  YT +G   E  RIW    S     N   Y   +S+L++  + + AE  
Sbjct: 279 SSRIAYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTM-YMSRLSALLRTNDIDGAEAT 337

Query: 337 YDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
             EWE++     D R+ N+++ AY     +E A +  +  + KG  P   TW  L  G+ 
Sbjct: 338 LKEWETVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWYKLAGGFF 397

Query: 396 KKGQMEKVLECFKKAIGSVR-KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           K GQ+ + ++  +KA+ S    W PD   +  + N   +Q D+  AE ++ TL+    ++
Sbjct: 398 KTGQVPEAVDMTRKALDSATPPWRPDLANVLMSLNHFVDQKDVGAAEEMVSTLQKLVPLT 457

Query: 455 TEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++Y+ LL+TY +AGK P  ++ERM++D ++ D ET+++L
Sbjct: 458 RDVYHCLLKTYVRAGKPPSDLLERMKEDGLEADEETERIL 497


>gi|297843032|ref|XP_002889397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335239|gb|EFH65656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 154/502 (30%), Positives = 262/502 (52%), Gaps = 9/502 (1%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMR 60
           +F  +    +  A V S  AA      +      +  R+ L ++L  L  A  + A T+ 
Sbjct: 21  VFAPASATGVVEASVSSPAAANGVEASVPAPTAASRQRE-LYKKLSKLSVAGGTVAETLN 79

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           ++  EG TV K +L R  ++LRK +R++HALE+ +WME +  +     D+A+ LDLI+K 
Sbjct: 80  QFIMEGITVRKVDLFRCAKDLRKFRRHQHALEIFDWME-KRKMTFSVSDHAIRLDLIAKA 138

Query: 121 RGLSSAENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           +GL +AEN+F NL P       T  AL++ Y    +  +A+A  EKM E  F+   LP+N
Sbjct: 139 KGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEGKAKAHFEKMDELNFVNNSLPFN 198

Query: 180 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KK 237
           +M+++Y+   Q +KVP ++  +K +  SP  VTY++W+ +C S ND +  EK   E+ K 
Sbjct: 199 NMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKD 258

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           ++    W ++S L +++ K  L EKA + LK MEK+    NR ++  L+SLY  +    E
Sbjct: 259 SEAKTTWNTFSNLAAIFTKAGLYEKAESALKSMEKKMNPNNRDSHHFLISLYAGISKGTE 318

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V R+W+ +     ++N+  Y  ++ ++ KLG+ +  + I+ EWES     D R+ NI + 
Sbjct: 319 VYRVWESLKKARPEVNNLSYLVMLQAMSKLGDIDGIKKIFTEWESKCWAYDMRLANIAIN 378

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG----S 413
            Y+  N  E AE   +  + K   P     +LL    L+ G+ +  ++  + A+     +
Sbjct: 379 TYLKGNMYEEAEKILDGAMEKSKGPFSKARQLLMIHLLENGKADLAMKHLETAVSDPAEN 438

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
             +W     L++  +   +   D+DGAE     L N   V  E  + L++TYA A K   
Sbjct: 439 KDEWSWSSELVSLFFLHFKRAKDVDGAEDFCKILSNWKPVDCETMSFLIKTYAAAEKTCP 498

Query: 474 IIVERMQKDNVQMDAETQKVLK 495
            + ER+ +  +++  E Q +LK
Sbjct: 499 DMRERLSQHQIEVSEEIQDLLK 520


>gi|357140786|ref|XP_003571944.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 497

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 246/461 (53%), Gaps = 8/461 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWK-EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           D+L  R+ ++   +      + +W   E   V K+EL  I+++L +L+R+ HALE+  WM
Sbjct: 35  DSLYHRVAAVAIPRLQLTPVLEQWAFAEDRPVEKHELQAIIKKLIRLRRFSHALEMSMWM 94

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +    L  GD A  L+LISK+ GL SA  +F  L  +++      +LL  Y + K   
Sbjct: 95  TDRRYFPLKPGDVAYRLELISKVHGLKSAVEYFGGLSKEIKKSQCYGSLLKCYAEAKFVE 154

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           EAE    +M E G +    PYN M+ LY   GQ++KV  M + ++++   PD+ T ++ L
Sbjct: 155 EAEKFFGEMQEMGMMSS-YPYNVMMKLYWETGQVEKVRTMYRAMEESGIKPDLFTIDILL 213

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
               +  D E  E+   + K  +    W SY+ + S ++K  L  KA   L+E EKR   
Sbjct: 214 TVYKASGDLEGIEEVLEKAKPRENLVGWHSYAIVASAFMKAGLQGKALQALQESEKRIDP 273

Query: 277 KN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           KN RVAY  LLS+  + G + EV RIW    S     N + Y C IS+L+K+ + ++AE 
Sbjct: 274 KNGRVAYGFLLSMCADSGMRSEVDRIWDVYKSKVPTCN-SMYMCRISALLKMNDTDEAEK 332

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
            + EWES     D R+ N+LL  Y     +E AE+  +  +TKG  P   TW  L  G+ 
Sbjct: 333 AFREWESRFVHHDFRLINLLLNGYCAEGLMEKAEALVDEAITKGRMPYANTWYKLAAGFF 392

Query: 396 KKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           K GQ+ K ++  +KA+ S    W PD   +  + +   EQ +++ AE +   LR+   ++
Sbjct: 393 KDGQVLKAVDLTRKALASATSGWEPDLTNVLMSLDHFMEQKNVEAAEEMASLLRSLVPLT 452

Query: 455 TEIYNSLLRTYAKAGKMPLI-IVERMQKDNVQMDAETQKVL 494
            ++Y+SLL+TY  AG MP+  +++RM +D  + D ET ++L
Sbjct: 453 RDVYHSLLKTYVHAG-MPVSDLLDRMNEDGFEADQETDRIL 492


>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa]
 gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]
          Length = 516

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 228/416 (54%), Gaps = 13/416 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW +EG T+ +  ++ +++ELR+ +RY HALE+  WM  +  + L S   AV 
Sbjct: 61  SVIPVLDKWIQEGETIWEDLIHALIKELRQYRRYHHALEISMWMTDKRYLALTSRAVAVR 120

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLISK+ G+   EN+F N+P K++G ++  ALL+ Y   K   +AEA+M++M E GF +
Sbjct: 121 LDLISKVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSVEKAEAVMQRMRELGFAR 180

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
            PL +  MLNLY   G  +K+  +++E+++N  S D   Y + L++ A+ +D E  EK  
Sbjct: 181 KPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIRLSSYAAASDSEGLEKT- 239

Query: 233 LELKKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLS 287
             LK+ + DP    DW +Y+T+ + Y K+ L +KA   LK  E+  T  +    Y  L++
Sbjct: 240 --LKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLITGERRSTPYDYLMT 297

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y   G K++VLR+W+          +     VI+SL+K  + E AE I++EWES     
Sbjct: 298 QYATTGTKEDVLRVWELHKRYVGNRKN---ISVITSLLKFDDLESAEKIFEEWESQKLCD 354

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D  +PN L+ AY  +  LE AE    R ++ G KP   TW LL  GYL+  Q  K +E  
Sbjct: 355 DIIIPNFLVDAYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLLAKGYLQHNQTPKAVEAM 414

Query: 408 KKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
           K+ I  S  +  P      A    L++ GD+D AE  +  LR    +S +I + LL
Sbjct: 415 KEMIVLSGPRSRPSTVSWVACLQHLKDSGDMDNAEGFINLLREKDIISLDIQDKLL 470


>gi|297809953|ref|XP_002872860.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318697|gb|EFH49119.1| hypothetical protein ARALYDRAFT_490379 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 500

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/494 (30%), Positives = 262/494 (53%), Gaps = 10/494 (2%)

Query: 4   RSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWK 63
           R   ATL A+       A I+    A+    A    ++ ++L SL         T+ +  
Sbjct: 9   RRFCATLPAS------PAAISGEAAASVPTKAKKNPSVYKKLSSLGTRGGKMEETLNQLV 62

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
            EG  V K+EL R  ++LRK ++ + ALE+ EWME + +I     D+A+ LDLI+K +GL
Sbjct: 63  MEGVPVKKHELIRYAKDLRKFRQPQRALEIFEWMERK-EIVFTGSDHAIRLDLIAKTKGL 121

Query: 124 SSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
            +AE +F +L D ++   T  +LL+ Y   K+  +A+A  E M +   +   LP+N+++ 
Sbjct: 122 EAAETYFNSLNDSIKNQSTYGSLLNCYCVEKEEDKAKAHFENMVDLNHVSNSLPFNNLMA 181

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKID 241
           +Y+  GQ +KVP ++  +K KN +P  +TY++W+ +C S  D +  EK   E+K + +  
Sbjct: 182 MYLRIGQSEKVPALVVAMKQKNITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGI 241

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
             W +++ L ++YIK+ L +KA   LK +E +     R  Y  L+SLY  +    EV R+
Sbjct: 242 SSWDTFANLAAIYIKVGLYDKAEEALKSLENKMNPHIRDCYHFLISLYAGIANASEVYRV 301

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W  +      +N++ Y  ++ +L KL + +  + I+ EWES   T D R+ N+ +++Y+ 
Sbjct: 302 WDLLKKRHPNVNNSSYLTMLQALSKLNDIDGIKKIFTEWESTCWTYDMRMANVAISSYLK 361

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPD 420
           +N  E AE+ +N  +TK         +LL    LK  Q +  L+ F+ A+  + K W   
Sbjct: 362 QNMYEEAEAVFNGAMTKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDLDKNWTWS 421

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
             LI++ +   EE  D+DGAE    TL     + +E Y  L++TY  A K    + +R++
Sbjct: 422 SELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLGSETYTLLMKTYLSAEKACPDMKKRLE 481

Query: 481 KDNVQMDAETQKVL 494
           +  +Q+D E   +L
Sbjct: 482 EQGIQVDEEQDCLL 495


>gi|125525544|gb|EAY73658.1| hypothetical protein OsI_01545 [Oryza sativa Indica Group]
          Length = 522

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/460 (33%), Positives = 246/460 (53%), Gaps = 4/460 (0%)

Query: 40  TLGRRLLSLVYA-KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           +L RRL +L  A + S +  M KW  EG      +L + V+ELRK KR+ HALE+ EWM 
Sbjct: 56  SLYRRLSALGGAGEGSVSRVMNKWVREGREARAADLAKYVKELRKYKRHAHALELMEWMV 115

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
               + +   ++A+ LDLI K+RG+ +AE +F  LPD  +   T  ALL+ Y   K   +
Sbjct: 116 NTKGMNMSYTNHAIRLDLIYKVRGIEAAELYFAGLPDPGKNHKTYGALLNCYCSAKMEDK 175

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A  +  KM E G     LP N++++LY+  GQ  KV  + +E+K KN  PD +T  L ++
Sbjct: 176 ATDIYRKMDELGISSSTLPINNLMSLYVKIGQHRKVTSLFEEMKVKNVKPDNLTCCLLMS 235

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CR 276
           + A+ N  +T  +   E+++ K+   W +YSTL SLY+   + E+A + LK++E     +
Sbjct: 236 SYAALNKIDTVGEVLKEMEEKKVALGWSAYSTLASLYVNANMVEEAESALKKLESLIDVQ 295

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
             R  +  L+SLY ++G   EV R+W  + + F K+ +  Y  ++ +L KL + ++ + I
Sbjct: 296 AGRQPFDFLMSLYASVGNLSEVNRVWNLIKANFQKVTNTSYLGMLQALYKLNDDDRMKQI 355

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           Y++WES     D R+ N++  A++     + AE  + ++  KG +    T EL    Y+ 
Sbjct: 356 YEDWESNYENYDARLTNMMTRAHLRNGLTKEAELLWEKVKEKGAEFDSKTCELFLEHYMG 415

Query: 397 KGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           KG M   L   +      RK    D   I+      EE  D++GAE  L  LR +G +  
Sbjct: 416 KGDMTSALNWVENMTKLPRKKSKLDQEKISCFLKYFEEHKDVEGAERFLNCLRTSGCIDG 475

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           + Y SLLRTY  AGK    I + +++D +++     K+LK
Sbjct: 476 KAYESLLRTYLAAGKTSRSIRQMIKEDKIEICYGIGKLLK 515


>gi|115482784|ref|NP_001064985.1| Os10g0501300 [Oryza sativa Japonica Group]
 gi|22165054|gb|AAM93671.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432901|gb|AAP54477.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113639594|dbj|BAF26899.1| Os10g0501300 [Oryza sativa Japonica Group]
          Length = 513

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 7/463 (1%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G D+L RR+         A +  + W  E   V K EL  +V+ LR+  R+  ALE+  W
Sbjct: 48  GEDSLFRRVAGADPRIPLAPVLEQWWLAEERPVSKPELQSLVKYLRRRCRFSQALELSMW 107

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +  + L  GD A  L+LISK+ GL  A  +F+ +P+++R      +LL  Y + ++ 
Sbjct: 108 MTERRHLHLSPGDVAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAERV 167

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
            +AE L E M   G +     YN M+NLY   GQ+++V  M + +++    PD+ T +  
Sbjct: 168 EKAEELFENMRGMG-MANSYAYNAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDNL 226

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-T 274
           ++A A   D E  EK  LE         W S++ +  +++K  + E+A    +E EKR T
Sbjct: 227 VSAYADVEDVEAIEKV-LEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRIT 285

Query: 275 CRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFEK 332
            RK+ RVAY  LL++Y ++    EV RIW    S + A   +  Y C IS L+K+ +   
Sbjct: 286 ARKDGRVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIVG 345

Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           AE  Y+EWES     D R+ NILL AY     +E AE+  ++ + KG      TW  L  
Sbjct: 346 AEKAYEEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLAG 405

Query: 393 GYLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           GY K GQ+ K  +  KKA+ S   +W PD   +  + N   EQ +++ AE +   L+   
Sbjct: 406 GYFKVGQVSKAADLTKKALASASNEWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRLV 465

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++ ++Y+ LL+TY  AG+    +++RM+KD ++ D ET K+L
Sbjct: 466 PLTRDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEETDKIL 508


>gi|449458295|ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
 gi|449518825|ref|XP_004166436.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
          Length = 474

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/466 (31%), Positives = 250/466 (53%), Gaps = 8/466 (1%)

Query: 35  AGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC 94
           A  +  L  RL +L     S A T+ ++  EG+ V KYEL + ++ELRK +RY H L++ 
Sbjct: 5   ANNQRGLYPRLSALGATGGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQIM 64

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154
           EWME +  I     DYA+ LDLISK+ G+++AE +F +LP   +   T  ALL+ Y +  
Sbjct: 65  EWMETR-KINYSFTDYALRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKEM 123

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
              +A  L +KM E   +   L +N+++ +Y+     +KVP ++ E+K +       TYN
Sbjct: 124 MEEKALTLFKKMDELK-ISTSLSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYN 182

Query: 214 LWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
           +W+ +CAS ND    E+   E+K + +   DW +YS L S Y+K    EKA   LK++E+
Sbjct: 183 VWMNSCASLNDIGKVEEILEEMKMEDRNKFDWTTYSNLASFYVKAGQFEKAELALKKLEE 242

Query: 273 --RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
             ++ + +R+ Y  L+SLY +     EV RIW  + S+++ M +  Y  ++ +L KL + 
Sbjct: 243 EMKSDKNDRLVYHCLISLYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLKDI 302

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           E  +  Y EWES     D R+ N ++ AY+ ++  E A   +     +   P     E+ 
Sbjct: 303 EGLKRTYKEWESNCRNFDLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRAREMF 362

Query: 391 TWGYLKKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
              +LK  Q++      + A+     ++W P     TA  N  EE+ D++GAE     L+
Sbjct: 363 MVYFLKLKQVDSAFSHLESALSESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARILK 422

Query: 449 NAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
               +    Y+ LL+TY  AGK+   + +R+++D++++ +E +++L
Sbjct: 423 RLKCLDASGYHLLLKTYVAAGKLAPDMRKRLKEDDIEISSELEELL 468


>gi|449431834|ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
 gi|449478158|ref|XP_004155237.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
          Length = 492

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 249/449 (55%), Gaps = 8/449 (1%)

Query: 18  TKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRI 77
           T A     L L + ++    R+ L  R+  L   + +    + +W EEG  +  +EL RI
Sbjct: 26  TDAFCFVALRLYSTRRSCDRRN-LYARISPLGDPECTVVPVLNQWIEEGRNIKDFELRRI 84

Query: 78  VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137
           VR+LR  +RY+ ALEV EWM  +    L + D+A+ LDLI ++RGL SAE +F ++ ++ 
Sbjct: 85  VRDLRTCRRYRQALEVSEWMCSKGLFSLTTRDFAIQLDLIGQVRGLDSAEKYFGSVSNQK 144

Query: 138 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
                  ALL+ YV+     ++ A M+KM E G    PL YN ++ LY++ GQ DKVP +
Sbjct: 145 EIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLASSPLCYNDIMCLYLNTGQADKVPNV 204

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYI 255
           L E+K+N   PD  +Y + +++  +++D  + E    E++ +T I  DW +YS +   +I
Sbjct: 205 LSEMKENGVLPDNFSYRICISSYGARSDVISMENVLKEMEGQTHISMDWTTYSMVAGFFI 264

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K  + +KA   L++ E +   ++ + ++ L+S YTN+G+K+EV+R+W  ++    K  + 
Sbjct: 265 KAGMHDKAMNYLRKCEDKV-DEDALGFNHLISHYTNLGHKNEVMRLW-ALLKKGKKQLNR 322

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
           +Y  ++ SLVKL   E+AEN+  EWES     D RVPN++L  Y  +  +E AE     +
Sbjct: 323 DYITMLGSLVKLELLEEAENLVMEWESSCQCYDFRVPNVVLIGYSQKGLIEKAEKMLRNI 382

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLE 432
           +  G+ P   +W ++  GYL+K  +EK  EC K+A+   G  + W P   ++++    L 
Sbjct: 383 IVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKVWRPKPNVLSSILRWLS 442

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
           E    +  +  + +L+    +  ++ N+L
Sbjct: 443 ENRRYEEMKEFMSSLKTVPSMDEKLNNAL 471


>gi|293331503|ref|NP_001168643.1| uncharacterized protein LOC100382430 [Zea mays]
 gi|223949857|gb|ACN29012.1| unknown [Zea mays]
 gi|413933913|gb|AFW68464.1| hypothetical protein ZEAMMB73_255812 [Zea mays]
          Length = 500

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 217/390 (55%), Gaps = 5/390 (1%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           EL RIV+ELRK +R++ ALEV EWM L+  +K +  D+A+HLDLI +I G+ +AE +F N
Sbjct: 81  ELQRIVKELRKRRRHRQALEVSEWMSLKGHVKFLPKDHAIHLDLIGQIHGVEAAETYFNN 140

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           L DK +      ALL+ Y +     +A A    M E GF+   LPYN ++ LY   GQ +
Sbjct: 141 LSDKDKTEKPYGALLNCYTRELLVDKALAHFRNMKELGFVFSTLPYNDLMGLYTRIGQHE 200

Query: 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           +VP ++ E+K N   PD  +Y + + +  ++ D    E    E++ + +I  DW +Y+ +
Sbjct: 201 RVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENTLEEMECEPQIVVDWNTYAVV 260

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S YIK +L EKA + L + E +  +++  AY  L+SLY N+G K E  R+W   MS   
Sbjct: 261 ASNYIKGDLREKAYSALSKAEAKLDKQDPDAYRHLISLYGNLGDKSEAKRLWAVQMSNCK 320

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
           +  + +Y  ++S LVKL E  +AE++  EWES   + D RVPN+LL  Y  +  L+ AE 
Sbjct: 321 RYINRDYMNMLSVLVKLDEITEAEDLLKEWESSQNSFDFRVPNVLLTGYRQKALLDKAEM 380

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAA 427
             +  + KG  P  T+W ++  GY +KG + K  E  K A+        W+P   ++   
Sbjct: 381 LLDGFLKKGKTPPSTSWGIVAIGYAEKGDVAKAYEMTKNALSVHAPNTGWIPRPSMLEMI 440

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
              L ++G++   E  +  L+ A  V +++
Sbjct: 441 LKYLGDEGEVKDVEAFVSLLKAAVPVDSDM 470


>gi|115449217|ref|NP_001048388.1| Os02g0796400 [Oryza sativa Japonica Group]
 gi|47497029|dbj|BAD19082.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497238|dbj|BAD19283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537919|dbj|BAF10302.1| Os02g0796400 [Oryza sativa Japonica Group]
 gi|125584008|gb|EAZ24939.1| hypothetical protein OsJ_08720 [Oryza sativa Japonica Group]
          Length = 517

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 254/504 (50%), Gaps = 7/504 (1%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVY--AKRSAAITMRKWK 63
           +GA+    R F   ++  +       + G GG D L R LL +     + +AA  + +W 
Sbjct: 15  VGASRPNPRPFCCSSSSSSAPPATAREDGDGG-DLLSRCLLRIPRKSGRAAAAAAVERWA 73

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
            E   V   EL R V  LR+ +RY+ ALE+  WM+   D +L   D+ V LDLI+K+ G 
Sbjct: 74  RERGRVSPPELRRDVVRLRRARRYEQALEILSWMDSHNDFRLSPSDHMVRLDLIAKVHGT 133

Query: 124 SSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           S AE ++  L            LLH YV  +   +AE  M ++   G    P  +N ++ 
Sbjct: 134 SQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLPVDPHSFNEIMK 193

Query: 184 LYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLE-LKKTKID 241
           LY++  Q +KV  ++  +K+N  P +V++YN+W+ ACA  +   + + AF E L    ++
Sbjct: 194 LYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSAFKEMLNDDMVE 253

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
             W +Y TL +++ K     KA   L+  E +     R+ YS +++ Y  +  +D V+R+
Sbjct: 254 VGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYAALNDRDGVIRL 313

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W+    +  ++  A Y   +  L+K+G+  +AE  +  WE+ S   D RV N+LL AY+ 
Sbjct: 314 WEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVRVSNVLLGAYVR 373

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVP 419
              +E AE  +  ++ KG  P Y TWE+L  G+++  QM+K +   KK +  ++   W P
Sbjct: 374 NGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQMDKAVNAMKKGLSLLKTCHWRP 433

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
              L+ A     EEQG ++ A+  +  L+     S  +Y SLL  Y  A  +P  I + +
Sbjct: 434 PLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLPLYKSLLGAYINADIVPQNIPQMI 493

Query: 480 QKDNVQMDAETQKVLKITSEMPVS 503
             D + MD E  +++   S++ ++
Sbjct: 494 AGDQIDMDEEMDQLIIRASKIDIT 517


>gi|224064562|ref|XP_002301516.1| predicted protein [Populus trichocarpa]
 gi|222843242|gb|EEE80789.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 249/473 (52%), Gaps = 18/473 (3%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           RRL  L  +  S + T+ +   EG    K  L   +++LRK  R+ HA+EV EWM+ +  
Sbjct: 3   RRLSELGASGGSVSKTLNELILEGGKTSKINLTTCIKKLRKYGRFDHAIEVMEWMQ-KRK 61

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL 162
           +     D+AV+LDL +K +G+++AEN+F+NLP  ++   T S LL+ Y +   S +A  L
Sbjct: 62  MNFSHVDHAVYLDLTAKTKGIAAAENYFDNLPPSVQNHVTYSTLLNCYCKELMSEKALTL 121

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACAS 221
            EKM +   L   +P+N+++ L++  GQ +KV  ++QE+K +  SP   TYN+W+ +   
Sbjct: 122 FEKMDKMKLLSTSMPFNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYGC 181

Query: 222 QNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEME--------- 271
            ND E  ++   E+K   K +  W +YS L ++Y+K  L +KA + L+++E         
Sbjct: 182 LNDFEGVQRVLDEMKTDGKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGRDC 241

Query: 272 ----KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
               KR    +R AY  L+SLY       EV R+W  + S F    +  Y  V+ +L KL
Sbjct: 242 DFQKKRRHDADREAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALAKL 301

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
            + E     + EWES   + D  + N+ + A +  +  E A S ++  + +     +   
Sbjct: 302 KDVEGILKCFKEWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDEALKRTKGLFFKAR 361

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           E+    +LK  Q +  L+  K A    +  +W PD + ++A  N  E+  D+DGAE L  
Sbjct: 362 EMFMVFFLKNHQPDLALKHMKAAFSEAKEIEWQPDQKTVSAFLNYFEDGKDVDGAERLCK 421

Query: 446 TLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
             +    +++  Y  LL+TY  AG++   + +R+++DN++++ E + +L+  S
Sbjct: 422 IWKQINRLNSNAYILLLKTYTAAGRLAPEMRQRLEEDNIEINPELENLLERVS 474


>gi|125541465|gb|EAY87860.1| hypothetical protein OsI_09282 [Oryza sativa Indica Group]
          Length = 517

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/504 (29%), Positives = 254/504 (50%), Gaps = 7/504 (1%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVY--AKRSAAITMRKWK 63
           +GA+    R F   ++  +       + G GG D L R LL +     + +AA  + +W 
Sbjct: 15  VGASRPNPRPFCCSSSSSSAPPATAREDGDGG-DLLSRCLLRIPRKSGRAAAAAAVERWA 73

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
            E   V   EL R V  LR+ +RY+ ALE+  WM+   D +L   D+ V L+LI+K+ G 
Sbjct: 74  RERGRVSPPELRRDVVRLRRARRYEQALEILSWMDSHNDFRLSPSDHMVRLELIAKVHGT 133

Query: 124 SSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           S AE ++  L            LLH YV  +   +AE  M ++   G    P  +N ++ 
Sbjct: 134 SQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETFMAELQRYGLPVDPHSFNEIMK 193

Query: 184 LYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLE-LKKTKID 241
           LY++  Q +KV  ++  +K+N  P +V++YN+W+ ACA  +   + + AF E L    ++
Sbjct: 194 LYVATCQYEKVLSVIYLMKRNNIPRNVLSYNIWMNACAEVSGLASVQSAFKEMLNDDMVE 253

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
             W +Y TL +++ K     KA   L+  E +     R+ YS +++ Y  +  +D V+R+
Sbjct: 254 VGWSTYCTLANIFKKYGQSSKALACLRTAETKLSSTGRLGYSFIMTCYAALNDRDGVIRL 313

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W+    +  ++  A Y   +  L+K+G+  +AE  +  WE+ S   D RV N+LL AY+ 
Sbjct: 314 WEASKIVPGRIPAANYMSAMVCLIKVGDIGRAEWTFGSWEAESKKHDVRVSNVLLGAYVR 373

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVP 419
              +E AE  +  ++ KG  P Y TWE+L  G+++  QM+K +   KK +  ++   W P
Sbjct: 374 NGWIEKAERLHLHMLEKGAHPNYKTWEILMEGFVQSKQMDKAVNAMKKGLSLLKTCHWRP 433

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
              L+ A     EEQG ++ A+  +  L+     S  +Y SLL  Y  A  +P  I + +
Sbjct: 434 PLELLEAIAKYFEEQGSVEDADRFIKVLQKFNLTSLPLYKSLLGAYINADIVPQNIPQMI 493

Query: 480 QKDNVQMDAETQKVLKITSEMPVS 503
             D + MD E  +++   S++ ++
Sbjct: 494 AGDQIDMDEEMDQLIIRASKIDIT 517


>gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera]
          Length = 444

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 224/432 (51%), Gaps = 43/432 (9%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           V K+E+   V++LR  KR+  AL++ E M  +  + +   D A++LDLI+K RG+++AEN
Sbjct: 52  VFKWEVGDTVKKLRDRKRFYPALKLSETMA-KRGMNMTISDQAIYLDLITKTRGVAAAEN 110

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           +F +LP+  +   T  ALL+ Y +   + +AEALME+M E       +PYN ++ LY   
Sbjct: 111 YFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKI 170

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
           GQ +K+P ++QELK  +  PD  TYN+W+ A A+ ND    E+   E+K+  ++  DW +
Sbjct: 171 GQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTT 230

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS L S+Y+   + EKA   LKE+EKR   ++  A+  L++LY  +G   EV R+W+ + 
Sbjct: 231 YSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLR 290

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F K  +  Y  +I  LV L +   AE  + EWES     D RV N L+ AY     LE
Sbjct: 291 LAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLE 350

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            AE        +G KP   TWE+    +LK  +M++ ++C   AI +             
Sbjct: 351 KAEELKEHARRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAIST------------- 397

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 486
                                        E++ SL+R YA AG+   ++  R++ +NV++
Sbjct: 398 ---------------------------GVEVFESLIRIYAAAGRTSPVMRRRLKMENVEV 430

Query: 487 DAETQKVLKITS 498
               +K+L+  S
Sbjct: 431 SDSCKKLLEEVS 442


>gi|357146877|ref|XP_003574143.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Brachypodium distachyon]
          Length = 511

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 137/412 (33%), Positives = 231/412 (56%), Gaps = 6/412 (1%)

Query: 59  MRKWKEE-GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           + +W ++ G+ +   EL RIV+ELRK +R++ ALEV EWM  +  +K +  D+AVHLDLI
Sbjct: 77  IERWADKPGNRLRPVELERIVKELRKRRRHRQALEVSEWMSAKGLVKFLPKDHAVHLDLI 136

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
            ++ G+ +AE +F  L DK +      ALL+ Y +     ++ A  +KM E GF+   LP
Sbjct: 137 GQVHGVGAAEAYFNKLADKDKTEKPYGALLNCYTRELLVDKSLAHFQKMKELGFVFSSLP 196

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN+++ LY + GQ +KVP ++ E+K N   PD  +Y + + +  ++ D    E    E++
Sbjct: 197 YNNLMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRICINSYGARADFFGMENTLEEME 256

Query: 237 -KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            + +I  DW +Y+ L + YIK  L +KA + L++ E +   K+   Y+ L+SLY  +G K
Sbjct: 257 CEPQIVVDWNTYAVLANNYIKGNLRDKAISALQKAEAKIDIKDSDTYNHLMSLYGQLGDK 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV R+W   MS   +  + +YT +++ L+KL E E+AE +  EWES     D  VPN+L
Sbjct: 317 SEVKRLWALQMSNCKRHINKDYTTMLAMLLKLDEIEEAEALLKEWESSENAFDFHVPNVL 376

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---G 412
           L  Y  ++ L+ AE+  +  + KG  P  T+W ++  GY +KG + K  E  K A+    
Sbjct: 377 LTGYRQKDLLDKAEALLDDFLKKGKMPTSTSWAIVAIGYAEKGDVAKAYELTKNALCVYA 436

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
               W+P   +I      L ++ ++   E  +  L+ A  +++++ ++L R 
Sbjct: 437 PNSGWIPRPAMIEMILKYLGDECNLKDVETFVHLLQAAVPMNSDMTDALARA 488


>gi|297743994|emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 240/451 (53%), Gaps = 6/451 (1%)

Query: 4   RSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDT-LGRRLLSLVYAKRSAAITMRKW 62
           R + A    AR   T AA      +A +      R   L  RL +L     S A T+ + 
Sbjct: 47  RLISAGAGLARRLCTAAAATEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEH 106

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
            +EG  + K+EL+  +++LRK ++++HALE+ +WME    I     DYAV LDL+SK +G
Sbjct: 107 IKEGKLIAKHELSSCIKQLRKYRQFQHALEIMDWME-NRKIFFSYADYAVRLDLLSKTKG 165

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           L++AE +F NL    +   T   LL+ Y + K   +A AL EKM E  F    L +N+++
Sbjct: 166 LATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLM 225

Query: 183 NLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +L++  G+ + VP ++ E+KK + SPD  TYN+ + + A  ND E AE+   E+K+   D
Sbjct: 226 SLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENED 285

Query: 242 P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
              W +YS L ++Y+   L EKA   LK++E+     +R+AY  L+SLY  +    EV R
Sbjct: 286 KLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNR 345

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W  + S F K N+  Y  ++ +L  L + +  +  ++EW+S   + D R+ N+ + A++
Sbjct: 346 VWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFL 405

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWV 418
             + ++ AES     V +   P YT  ++    +LK  +++  L+  + A   V+  +W 
Sbjct: 406 GWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQ 465

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           P    + A     EE+ D++GAE     L+N
Sbjct: 466 PAPERVLAFLKYFEEEKDVEGAEKFCKILKN 496


>gi|302143278|emb|CBI21839.3| unnamed protein product [Vitis vinifera]
          Length = 501

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 224/424 (52%), Gaps = 7/424 (1%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           +L  R+ ++   K S +  + +W EEG TV K +L  +VR ++  +R+ HALE+ +WM  
Sbjct: 23  SLYDRIQAVRDPKASISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMTD 82

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
           +    L   D A+ LDLIS + G   AE++F N+P+ ++      ALL  YV+ K   +A
Sbjct: 83  RRYFTLTPSDAAIRLDLISMVHGRVQAESYFNNIPNNLKTSSAYGALLSGYVREKSVEKA 142

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAA 218
           EA M+KM E  F     PYN ++NLY   G   K+  ++QE++    P D  T    + A
Sbjct: 143 EATMQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQSKAIPCDAFTVRNLMVA 202

Query: 219 CASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
             + +D    EK    +++   I  DW  YS   S Y+K+ L +KA   LK++E      
Sbjct: 203 YVAASDISAMEKFLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHL 262

Query: 278 NRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            R+ A+  LLSLY   G+K E+ R+W      +       Y+C+I+ L KL + E AE I
Sbjct: 263 ERLSAFKFLLSLYARTGHKQELYRVWNLYKPSYEY--PEAYSCMITCLTKLDDIEGAEKI 320

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + EWE      D RV N LL+AY  R   + AES  N+++ + + P  +TW +L  GY++
Sbjct: 321 FQEWECECTMYDFRVLNRLLSAYCKRCLFDKAESLVNKVIEERM-PYASTWNILAKGYVE 379

Query: 397 KGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             QM K +E  KKAI   RK W P+  ++ A    LE QG+++  E +    +N G    
Sbjct: 380 DKQMPKAVEMLKKAISVGRKGWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDG 439

Query: 456 EIYN 459
           +I++
Sbjct: 440 DIHH 443


>gi|18411800|ref|NP_567220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75163252|sp|Q93WC5.1|PP300_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01990, mitochondrial; Flags: Precursor
 gi|14517494|gb|AAK62637.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
 gi|16323354|gb|AAL15390.1| AT4g01990/T7B11_26 [Arabidopsis thaliana]
 gi|332656708|gb|AEE82108.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 502

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 136/440 (30%), Positives = 244/440 (55%), Gaps = 4/440 (0%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           T+ ++  EG  V K++L R  ++LRK ++ + ALE+ EWME + +I     D+A+ L+LI
Sbjct: 59  TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERK-EIAFTGSDHAIRLNLI 117

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K +GL +AE +F +L D ++   T  +LL+ Y   K+  +A+A  E M +   +   LP
Sbjct: 118 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 177

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N+++ +Y+  GQ +KVP ++  +K K+ +P  +TY++W+ +C S  D +  EK   E+K
Sbjct: 178 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 237

Query: 237 -KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            + +    W +++ L ++YIK+ L  KA   LK +E       R  Y  L++LYT +   
Sbjct: 238 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANA 297

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV R+W  +   +  +N++ Y  ++ +L KL + +  + ++ EWES   T D R+ N+ 
Sbjct: 298 SEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVA 357

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSV 414
           +++Y+ +N  E AE+ +N  + K         +LL    LK  Q +  L+ F+ A+    
Sbjct: 358 ISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQD 417

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
           + W     LI++ +   EE  D+DGAE    TL     +S+E Y  L++TY  AGK    
Sbjct: 418 KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPD 477

Query: 475 IVERMQKDNVQMDAETQKVL 494
           + +R+++  + +D E + +L
Sbjct: 478 MKKRLEEQGILVDEEQECLL 497


>gi|4558568|gb|AAD22661.1|AC007138_25 hypothetical protein [Arabidopsis thaliana]
 gi|7268583|emb|CAB80692.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/440 (30%), Positives = 244/440 (55%), Gaps = 4/440 (0%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           T+ ++  EG  V K++L R  ++LRK ++ + ALE+ EWME + +I     D+A+ L+LI
Sbjct: 58  TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERK-EIAFTGSDHAIRLNLI 116

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K +GL +AE +F +L D ++   T  +LL+ Y   K+  +A+A  E M +   +   LP
Sbjct: 117 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 176

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N+++ +Y+  GQ +KVP ++  +K K+ +P  +TY++W+ +C S  D +  EK   E+K
Sbjct: 177 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 236

Query: 237 -KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            + +    W +++ L ++YIK+ L  KA   LK +E       R  Y  L++LYT +   
Sbjct: 237 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANA 296

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV R+W  +   +  +N++ Y  ++ +L KL + +  + ++ EWES   T D R+ N+ 
Sbjct: 297 SEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVA 356

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSV 414
           +++Y+ +N  E AE+ +N  + K         +LL    LK  Q +  L+ F+ A+    
Sbjct: 357 ISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQD 416

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
           + W     LI++ +   EE  D+DGAE    TL     +S+E Y  L++TY  AGK    
Sbjct: 417 KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPD 476

Query: 475 IVERMQKDNVQMDAETQKVL 494
           + +R+++  + +D E + +L
Sbjct: 477 MKKRLEEQGILVDEEQECLL 496


>gi|242034057|ref|XP_002464423.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
 gi|241918277|gb|EER91421.1| hypothetical protein SORBIDRAFT_01g017970 [Sorghum bicolor]
          Length = 496

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 224/400 (56%), Gaps = 5/400 (1%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           EL RIVRELRK  R++ ALEV EWM L+  +K +  D+A+HLDLI ++ G+ +AE +F N
Sbjct: 79  ELQRIVRELRKRHRHRQALEVSEWMNLKGHVKFLPKDHAIHLDLIGQVHGVGAAETYFNN 138

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           L DK +      ALL+ Y +     +A A  + M E GF+   L YN+++ LY + GQ +
Sbjct: 139 LSDKDKTEKPYGALLNCYTRELLVDKALAHFQNMKELGFVFSALSYNNLMGLYTNIGQHE 198

Query: 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           +VP ++ E+K++   PD  +Y + + +   + D    E    E++ + +I  DW +Y+ +
Sbjct: 199 RVPMVMAEMKRDGIVPDNFSYRICINSYGIRADFFGLENTLEEMECEPQIVVDWNTYAVV 258

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S YIK  L EKA + L++ E +  +K+  AY  L+SLY ++G K EV R+W   M    
Sbjct: 259 ASNYIKGYLREKAYSALRKAEAKMDKKDGDAYGHLISLYGHLGDKLEVKRLWALHMLNCK 318

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
           +  + +YT +++ LVKL E  +AE++  EWES     D +VPN+LL  Y  +  L+ AE+
Sbjct: 319 RYINKDYTNMLAVLVKLDEITEAEDLLKEWESSKNAFDFQVPNVLLTGYRQKGLLDKAET 378

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV---RKWVPDHRLITAA 427
             +  + KG  P  T+W ++  GY +KG + K  E  K A+        W+P   +I   
Sbjct: 379 LLDGFLKKGKTPTSTSWWIVAIGYAEKGDVAKAYELTKNALSVFAPNSGWIPRPSIIEMI 438

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
              L  +G++   E  +  L+ A  +++++  +L R  A+
Sbjct: 439 LKYLGNEGEVKDVEAFVNLLKVAVPMNSDMTEALSRARAR 478


>gi|357131918|ref|XP_003567580.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 545

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 241/459 (52%), Gaps = 4/459 (0%)

Query: 41  LGRRLLSLVYA-KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           L RRL +L  A + S +  + KW  EG      +L R V+ELRK KR+  ALE+ +WM  
Sbjct: 80  LYRRLSALGNAGEGSVSRVLNKWVREGREARSVDLERYVKELRKYKRHAQALELMDWMVH 139

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
              + +   ++A+ LDL+ K+RG+ +AE +F  LPD  +   T  ALL+ Y  +KK  +A
Sbjct: 140 TKGMNMSYTNHAIRLDLVYKVRGIEAAEKYFNGLPDPAKNHRTYGALLNCYCSSKKEEKA 199

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA 218
             L  KM + G     LP+N++++LY+  GQ  KV  + +E+K KN  PD +T  + + +
Sbjct: 200 TDLFHKMDDLGIASSTLPFNNLMSLYMKLGQHKKVAGLFEEMKAKNVKPDNLTCCVLMTS 259

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRK 277
            A+ N  +  E+   E+++      W +YSTL S+Y+   L EKA + LK++E     R 
Sbjct: 260 YAALNKIDAVEEVLKEMEEKNAALGWSAYSTLASIYVSAGLVEKAESALKKLEGLVQPRD 319

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
            R  +  L+SLY ++G   EV R+W  + + F K+ +  Y  ++ +L KL + ++ + I+
Sbjct: 320 GRQPFDFLMSLYASVGNLSEVNRVWDVVKATFPKVTNTSYFSMLQALYKLNDADRIKQIF 379

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +EWES     D ++ NI+  A++     + AE  + +   KG      T EL    Y+  
Sbjct: 380 EEWESNHECYDVKLTNIMTRAHLKNGLTKEAELLWEKAKAKGADFDSKTCELFLDHYMGT 439

Query: 398 GQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
             M+  L   +      +K    D   I       EEQ D+ GAE L   LR  G +  +
Sbjct: 440 EDMKSALHWVENVTKLPKKAGKLDQEKIQKFSKYFEEQKDVQGAEKLCSCLRTLGCIDGK 499

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           +Y SLLRTY  AG+    + ++++ D +++  +  K+LK
Sbjct: 500 VYESLLRTYLAAGETNHSLRQQIKDDKIEICYDIGKLLK 538


>gi|242057165|ref|XP_002457728.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
 gi|241929703|gb|EES02848.1| hypothetical protein SORBIDRAFT_03g012450 [Sorghum bicolor]
          Length = 530

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 237/459 (51%), Gaps = 4/459 (0%)

Query: 41  LGRRLLSL-VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           L RRL +L +  + S +  + KW  EG      EL + V+ELRK KR+ HALEV +WM  
Sbjct: 66  LYRRLSALGIAGEGSVSRVLNKWVREGGAPRSEELVKHVKELRKYKRHAHALEVMDWMVN 125

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
              + +   ++A+ LDLI K+RGL +AEN+F NLPD  +   T  ALL  Y   K   +A
Sbjct: 126 ARGMNMSITNHAIRLDLIYKVRGLEAAENYFANLPDPAKNHRTYGALLSCYCSAKMEEKA 185

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA 218
             L  +M E GF    LP N++++LY+   Q  KV  + +E+K KN  PD +T  + + +
Sbjct: 186 TYLYRQMDELGFWSGTLPINNLMSLYMKLDQHRKVDSLFEEMKVKNIKPDSLTCCILMTS 245

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRK 277
            A+ N  +  E+   E+ +  +   W +YSTL S+Y+     EKA + LK++E       
Sbjct: 246 YAASNKIDAIEELLKEMVEKDVSLGWSAYSTLASIYVNAGQVEKAESALKKLEGLIGAED 305

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
            R  +  L+SLY ++G   E+ R+W  + + F+ + +  Y  ++ +L KL + ++ + IY
Sbjct: 306 GRQPFDFLMSLYASLGNLSEINRVWDVIKAKFSTVTNISYLGMLHALYKLNDIDRMKQIY 365

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            EWES   T D R+ N+++  ++     E AE+   +   KG++    T EL    Y+ K
Sbjct: 366 MEWESNYQTYDVRLTNMMIRGHLRLGMSEEAETLREKAKEKGVEFDSKTCELFLDHYMGK 425

Query: 398 GQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           G M   L   +      +K    D   I       EE  D D AE     LR  G +  +
Sbjct: 426 GDMNSALNWVENMTKLPKKAGKLDQDRIYKFQKYFEEHKDADSAERFCNCLRMLGCIDGK 485

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            Y SLLRTY  AGK    + ++++ D +++  +  K+LK
Sbjct: 486 AYESLLRTYLAAGKKSCSLRQQIKNDKIEICYDIGKLLK 524


>gi|357142115|ref|XP_003572464.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 546

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 241/446 (54%), Gaps = 6/446 (1%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
           A  + +W  E   + + +L   VR+LR  + YK ALE+ +WME +    L  G +AV L 
Sbjct: 102 AAELDQWLRERRPLSEQQLFSYVRKLRSYRHYKRALELMDWMEAR-GASLQLGHHAVRLG 160

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           L+ K+ GL +AE +F +LP+  +   T S+LL+ Y +++K+ +   L EKM         
Sbjct: 161 LVCKVNGLEAAEEYFWSLPEMFKSIKTYSSLLNCYAEHRKADKGLELFEKMKAMNITPST 220

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L YN++++LY+   Q +K+P   +++++N    D  TY +   +    ND ++AEK   E
Sbjct: 221 LVYNNLMDLYLKTDQPEKIPTTFEQMRENHVRTDSFTYYMLTQSYIMVNDLKSAEKFVEE 280

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           L+K+   P W  Y+ L + Y K+   +KA   LK+ E+   R    A+ +LLSLY + G 
Sbjct: 281 LEKSTPVP-WSLYTVLANNYNKLAQFDKAVLALKKAEEVMDRSEISAWHNLLSLYASSGN 339

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             EV R+W+ + S F K  +  Y  ++S+L KL +F+  + ++ EWES     D R+ N+
Sbjct: 340 SSEVKRVWESLKSAFTKCINRSYLVMLSALKKLDDFDSLQQLFQEWESTHERYDMRITNV 399

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           ++ AY+ ++  + AE+     + KG     TT+ +    YL+K +  + L+ ++ A   V
Sbjct: 400 MIEAYLAKDMTDEAEALRQTAMAKG-HSNVTTFYIFVVSYLEKSRTSEALDIWRDAEKMV 458

Query: 415 R--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
           +   WVP   L+T      EE  D+DG E     L+  G +  E Y +L+RTYA AG+  
Sbjct: 459 KTPNWVPPKELVTRFLKHFEEAKDVDGMEAFWEHLKKLGCLDAEAYGALIRTYAAAGRTN 518

Query: 473 LIIVERMQKDNVQMDAETQKVLKITS 498
             I  R+++D V++  + +++L+  S
Sbjct: 519 TSISRRIEEDRVEIGPDMEELLRGVS 544


>gi|224130976|ref|XP_002320971.1| predicted protein [Populus trichocarpa]
 gi|222861744|gb|EEE99286.1| predicted protein [Populus trichocarpa]
          Length = 473

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 252/462 (54%), Gaps = 8/462 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           R  L +RL  L  +  S + T+  +  EG   +K +L   +RELRK  R+ +A+EV EWM
Sbjct: 12  RKRLYKRLSELGASGESVSKTLNDFVLEGGKTNKVDLLACIRELRKYGRFDYAIEVMEWM 71

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
           +     + ++  +AV+LDLI+K  G+++AEN+F+ L    +   T  ALL  Y +   S 
Sbjct: 72  Q----KRKMNVSHAVYLDLIAKKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSE 127

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           +A  L EKM +  FL   LP+N++++L++   Q +KV  ++QE+K K  SP   TYN+W+
Sbjct: 128 KALTLFEKMDKMKFLLTSLPFNNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWM 187

Query: 217 AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            +    ND E  E+   E+K   + +  W +Y+ L ++Y+K    +KA + LK++E++  
Sbjct: 188 QSYGCLNDFEGVERVLDEMKMDGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIE 247

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           R  R AY  L++LY       EV R+W  + S F    +  Y  ++ +L KL + E    
Sbjct: 248 RDYREAYHFLITLYAGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLK 307

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
            + EWES   + D R+ N+ + A +  +  E A   ++  + +     +   E+    +L
Sbjct: 308 CFKEWESSCHSYDMRLANVAIRACLEHDMYEEAALIFDDALKRTEGLFFNAREMFMVFFL 367

Query: 396 KKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
           K  Q++  L+  K A   V+  +W P+ + ++A +   E++ D++GAE L   L++   +
Sbjct: 368 KNHQLDLALKHMKAAFSEVKEIEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRL 427

Query: 454 STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            +  Y+ LL+TY  AGK+   + +R+++D ++++ E + +L+
Sbjct: 428 DSNAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINPELENLLE 469


>gi|242096944|ref|XP_002438962.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
 gi|241917185|gb|EER90329.1| hypothetical protein SORBIDRAFT_10g029030 [Sorghum bicolor]
          Length = 503

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 228/410 (55%), Gaps = 5/410 (1%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G  +   EL+ +V++LR+  R++ ALEV EWM L+  +K +  D+AVHLDLI  I G+ +
Sbjct: 78  GKRLRPCELHFVVKDLRRRHRHRQALEVSEWMNLKGHVKFLPKDHAVHLDLIGHIHGVGA 137

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           AE +F NL DK +      ALL+ Y +     +A A  +KM E GF+  PLPY++++ LY
Sbjct: 138 AETYFNNLSDKDKTEKPYGALLYCYTRECLVDKALAHFQKMKELGFVFTPLPYSNLMILY 197

Query: 186 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPD 243
            +  Q ++VP ++ E+K N   P+  +YN+ + A  ++ D    E    E++  +++  D
Sbjct: 198 ANVEQHERVPSVMAEMKSNGIVPNNFSYNICINAYGTRADFSGLENTLEEMEFASQVVVD 257

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
           W +Y+ + S YIK +L EKA + L++ E +   K+  AYS L+SLY ++G K E+ R+W 
Sbjct: 258 WRTYADVASHYIKGDLREKAYSALQKAEAKMDEKDSFAYSHLISLYGHLGDKSEIKRLWV 317

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
             M       +  Y  +++ LVKL E  +AE++  +WES     D +VPNILL  Y    
Sbjct: 318 LQMLKCKGCINKGYKYMLTVLVKLDEIAEAEDLLKKWESSKNEFDFKVPNILLKGYCQWG 377

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV---RKWVPD 420
            L+ AE+  +  + KG KP  T+W ++   Y +KG + +  E  K+A+        W+P+
Sbjct: 378 LLDKAEALLDGFLRKGKKPSATSWAIVASAYAEKGDVPRAYELTKRALSMCVPDSGWIPE 437

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
             +I      L ++G++   E  +  L+    +++++  +L R  ++  K
Sbjct: 438 PSMIEVILKYLGDEGEVKDVEAFIDLLKVVVPMNSDMTEALSRARSREEK 487


>gi|356536682|ref|XP_003536865.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Glycine max]
          Length = 593

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 254/473 (53%), Gaps = 12/473 (2%)

Query: 28  LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY 87
           L T  +    +  L R L +L     + + T+ ++  EG  + K EL R V +LRK +R+
Sbjct: 17  LCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRF 76

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147
           +HALE+ EWME++  +     +YAV LDL+SK +G+ +AENFF  LP   +   T  ALL
Sbjct: 77  QHALEIIEWMEIR-KVNFSWSNYAVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALL 135

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207
           + Y +     +A +  + M E G++   L +N+++ L++  G+  KVPQ+++ +KK T P
Sbjct: 136 NCYCKELMKDKALSHFDTMDELGYV-TNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIP 194

Query: 208 -DVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAAT 265
               TY++W+ +CAS ND   AE+ + E+K + +    W +YS L S+Y+K +  EKA  
Sbjct: 195 MSPFTYHIWMNSCASSNDLGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEM 254

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            LK +E++   K R AY  LL LY   G   EV R+W  + S+ + + +  Y  ++S+L 
Sbjct: 255 MLKMLEEQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWDSLKSV-SPVTNFSYLVMLSTLR 313

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           +L + E     + EWE+   + D R+ ++ ++A++N+N LE AE  +     +   P + 
Sbjct: 314 RLNDMEGLTKCFKEWEASCVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFR 373

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             E     +LKK +++  +   + A+  V+  KW P  +++ A     EE+ D+DG + L
Sbjct: 374 VREEFMKFFLKKHELDAAVRHLEAALSEVKGDKWRPSPQVVGAFLKYYEEETDVDGVDEL 433

Query: 444 LVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
              L+     +    +S +++   A K    I   M++D+    A+  ++L I
Sbjct: 434 SKILK-----ANNFDDSWIKSCITASKSSPEIDPGMKEDSQVYHAQETRLLDI 481


>gi|255647669|gb|ACU24296.1| unknown [Glycine max]
          Length = 484

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 252/473 (53%), Gaps = 12/473 (2%)

Query: 28  LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY 87
           L T  +    +  L R L +L     + + T+ ++  EG  + K EL R V +LRK +R+
Sbjct: 17  LCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRF 76

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147
           +HALE+ EWME++  +     +YAV LDL+SK +G+ +AENFF  LP   +   T  ALL
Sbjct: 77  QHALEIIEWMEIR-KVNFSWSNYAVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALL 135

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207
           + Y +     +A +  + M E G++   L +N+++ L++  G+  KVPQ+++ +KK T P
Sbjct: 136 NCYCKELMKDKALSHFDTMDELGYV-TNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIP 194

Query: 208 -DVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAAT 265
               TY++W+ +CAS ND   AE+ + E+K + +    W +YS L S+Y+K +  EKA  
Sbjct: 195 MSPFTYHIWMNSCASSNDLGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEM 254

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            LK +E++   K R AY  LL LY   G   EV R+W  + S+ + + +  Y  ++S+L 
Sbjct: 255 MLKMLEEQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWDSLKSV-SPVTNFSYLVMLSTLR 313

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           +L + E     + EWE+   + D R+ ++ ++A++N+N LE AE  +     +   P + 
Sbjct: 314 RLNDMEGLTKCFKEWEASCVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFR 373

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             E     +LKK +++  +   + A+  V+  KW P  +++ A +   EE+ D+DG +  
Sbjct: 374 VREEFMKFFLKKHELDAAVRHLEAALSEVKGDKWRPSPQVVGAFFKYYEEETDVDGVDEF 433

Query: 444 LVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
               +     +    +S +++   A K    I   M++D+    A   ++L I
Sbjct: 434 SKIFK-----ANNFDDSWIKSCITASKSSPEIDPGMKEDSQVYHAHETRLLDI 481


>gi|15217734|ref|NP_171739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173342|sp|Q9FZ24.1|PPR4_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02370, mitochondrial; Flags: Precursor
 gi|9857533|gb|AAG00888.1|AC064879_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332189300|gb|AEE27421.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 258/514 (50%), Gaps = 20/514 (3%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLG------------RRLLSL 48
           +F  +    +  A V S  AA +    +++     G R ++             ++L  L
Sbjct: 21  VFAPASATGIVEASVSSPAAANVVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSML 80

Query: 49  VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
                + A T+ ++  EG TV K +L R  + LRK +R +HA E+ +WME +  +     
Sbjct: 81  SVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWME-KRKMTFSVS 139

Query: 109 DYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           D+A+ LDLI K +GL +AEN+F NL P       T  AL++ Y    +  +A+A  E M 
Sbjct: 140 DHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMD 199

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E  F+   LP+N+M+++Y+   Q +KVP ++  +K +  SP  VTY++W+ +C S ND +
Sbjct: 200 ELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259

Query: 227 TAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             EK   E+ K ++    W ++S L ++Y K  L EKA + LK ME++    NR ++  L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +SLY  +    EV R+W+ +     ++N+  Y  ++ ++ KLG+ +  + I+ EWES   
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D R+ NI +  Y+  N  E AE   +  + K   P     +LL    L+  + +  ++
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439

Query: 406 CFKKAIGSV----RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
             + A+        +W     L++  +   E+  D+DGAE     L N   + +E    L
Sbjct: 440 HLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFL 499

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           ++TYA A K    + ER+ +  +++  E Q +LK
Sbjct: 500 IKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533


>gi|17529324|gb|AAL38889.1| unknown protein [Arabidopsis thaliana]
          Length = 537

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 258/514 (50%), Gaps = 20/514 (3%)

Query: 1   MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLG------------RRLLSL 48
           +F  +    +  A V S  AA +    +++     G R ++             ++L  L
Sbjct: 21  VFAPASATGIVEASVSSPAAANVVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSML 80

Query: 49  VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
                + A T+ ++  EG TV K +L R  + LRK +R +HA E+ +WME +  +     
Sbjct: 81  SVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWME-KRKMTFSVS 139

Query: 109 DYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           D+A+ LDLI K +GL +AEN+F NL P       T  AL++ Y    +  +A+A  E M 
Sbjct: 140 DHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMD 199

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E  F+   LP+N+M+++Y+   Q +KVP ++  +K +  SP  VTY++W+ +C S ND +
Sbjct: 200 ELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAIKQRGISPCGVTYSIWMQSCGSLNDLD 259

Query: 227 TAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             EK   E+ K ++    W ++S L ++Y K  L EKA + LK ME++    NR ++  L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +SLY  +    EV R+W+ +     ++N+  Y  ++ ++ KLG+ +  + I+ EWES   
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D R+ NI +  Y+  N  E AE   +  + K   P     +LL    L+  + +  ++
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439

Query: 406 CFKKAIGSV----RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
             + A+        +W     L++  +   E+  D+DGAE     L N   + +E    L
Sbjct: 440 HLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFL 499

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           ++TYA A K    + ER+ +  +++  E Q +LK
Sbjct: 500 IKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533


>gi|326502008|dbj|BAK06496.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 243/466 (52%), Gaps = 6/466 (1%)

Query: 36  GGRDT--LGRRLLSLVYA-KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALE 92
           G +D+  L RRL +L  A + S +  + KW  EG      +L R V+ELR+ KR+  ALE
Sbjct: 79  GTKDSRPLYRRLSALGNAGEGSVSAVLNKWLREGRETRSVDLERYVKELRRYKRHSQALE 138

Query: 93  VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152
           + +WM     + +   ++A+ LDLI K+RGL +AE +FE LPD  +   T  ALL+ Y  
Sbjct: 139 LMDWMVHTKGMNMSYTNHAIRLDLIYKVRGLEAAEKYFEGLPDPAKNHRTFGALLNCYCS 198

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVT 211
           +K+  +A  L  KM E G     LP N++++LY+  GQ  KV  + +E+K KN  PD +T
Sbjct: 199 SKEEEKATDLYRKMDELGISSSTLPINNLMSLYMKLGQHKKVCSLFEEMKEKNVKPDNLT 258

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
             + + + A+ N  +  E+   E+++      W +YSTL S+Y    L EKA + LK++E
Sbjct: 259 CCILMTSLAALNKIDDVEQVLKEMEEKDGVLGWSAYSTLASIYQSAGLVEKAESALKKLE 318

Query: 272 KRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
                R  R  +  L+SLY ++G   EV R+W  + + F K+ +  Y  ++ +L+KL + 
Sbjct: 319 GLVQDRDGRQPFDFLMSLYASVGNLSEVKRVWGVVKATFPKVTNTSYFSMLQALLKLNDA 378

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           +  + +++EWES     D ++ N++  A++     + AE  + +   KG      T EL 
Sbjct: 379 DYMKQVFEEWESNHEFYDAKLTNVMTRAHLKNGMAKEAELLWEKAKEKGACFDSKTCELF 438

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
              Y+  G M+  L   +      +K    D   I       EEQ D+ GAE     LR 
Sbjct: 439 LDHYMVAGDMKSALNWVENVTKLPKKTAKLDQDKIPKFSKYFEEQKDVQGAERFCRCLRA 498

Query: 450 AGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            G +  + Y SLLRTY  AG+    + ++++ D +++  +  K+LK
Sbjct: 499 LGCIDGKAYESLLRTYLAAGETSRSLRQQIKDDKIEICYDIGKLLK 544


>gi|224121680|ref|XP_002330626.1| predicted protein [Populus trichocarpa]
 gi|222872230|gb|EEF09361.1| predicted protein [Populus trichocarpa]
          Length = 441

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/400 (33%), Positives = 228/400 (57%), Gaps = 9/400 (2%)

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           K S    + +W +EG+++ + +L   ++  R+ +R+ HAL++ +WM  +   +   GD+A
Sbjct: 17  KVSIIPVIEQWLKEGNSIKQSDLQNFIKLFRRHRRFSHALQISQWMSDERGSEQSPGDFA 76

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           V LDLISK+ GL  AE ++ ++PD +RG     ALL+ Y   ++  +AEA M+KM E G 
Sbjct: 77  VRLDLISKVHGLEQAEEYYNSIPDHLRGTQVYGALLNCYAHKRRLEKAEATMQKMRELGL 136

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
           ++  L YN ML+LY   G+ +K+  +++E+ +K  + D+ T+N+ L A  + ++ E  EK
Sbjct: 137 VQT-LSYNVMLSLYSHMGRYEKLEALVKEMEEKGVNSDIYTFNIRLHAYVATSNIEEMEK 195

Query: 231 AFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC----RKNRVAYSSL 285
             ++++  + I+ D+ ++  + + Y+K  L EK+   LK  E+ T          AY  L
Sbjct: 196 LLMKMETDSLINIDFHTFFAVANGYLKAGLLEKSIVMLKRAEELTVPMVGTTKAHAYEML 255

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L+LY + G KD V R+W    +   ++ ++ Y C+I+SL++LG+ + AE I +EW S   
Sbjct: 256 LTLYGSAGNKDGVYRVWNSYKNT-GRIFNSTYICMINSLMRLGDIDGAEWISEEWVSRKT 314

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D R+PN ++ AY  +   + AE + N++V  G++   ++W+ L  GY   GQM K +E
Sbjct: 315 LYDIRIPNTMIRAYSRKGLWKKAEEYVNKIVESGMQLEASSWDHLATGYHFGGQMAKAVE 374

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             KKAI  S   W P+   +      LE +GD + AE LL
Sbjct: 375 TLKKAISISKPGWKPNPYTLKTCLWYLESKGDEEAAEELL 414


>gi|115457716|ref|NP_001052458.1| Os04g0320200 [Oryza sativa Japonica Group]
 gi|32490390|emb|CAE04700.1| OSJNBa0041M06.2 [Oryza sativa Japonica Group]
 gi|38344779|emb|CAE01505.2| OSJNBb0026L04.10 [Oryza sativa Japonica Group]
 gi|113564029|dbj|BAF14372.1| Os04g0320200 [Oryza sativa Japonica Group]
 gi|125543501|gb|EAY89640.1| hypothetical protein OsI_11170 [Oryza sativa Indica Group]
 gi|125589896|gb|EAZ30246.1| hypothetical protein OsJ_14297 [Oryza sativa Japonica Group]
 gi|215767374|dbj|BAG99602.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 524

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 236/468 (50%), Gaps = 45/468 (9%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR LRK   Y+ AL++ E M  +     VS D A+ LDL++K RG+++AE +F
Sbjct: 51  KWEVGVCVRRLRKQALYRPALKLSEVMARRGMNPTVS-DQAIRLDLVAKSRGIAAAEKYF 109

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+ Y ++  + +AEALM KM E  F    + YN ++ LY    Q
Sbjct: 110 LDLPETSKTHLTYGALLNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQ 169

Query: 191 LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q++K  +  PD+ TYN+W+ A A++ D +  E+   E+K+  ++ PDW +YS
Sbjct: 170 HEKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYS 229

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y+   L EKA   LKE+EK     +  AY  L++LY       EV R+W+ +   
Sbjct: 230 NLASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRN 289

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES-----------ISGTG---------- 347
             +  +  Y  +I +L  L +   AE  + EWE+             GT           
Sbjct: 290 QPRRANMSYLNMIQALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVK 349

Query: 348 ----------------DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
                           D RV N ++ AYI     + A +   R   +G +    TWE+  
Sbjct: 350 ATKDKGTDGELKHPKYDIRVANAMIKAYITEGMFDKAVAVKKRAKMRGGRLNAKTWEIFM 409

Query: 392 WGYLKKGQMEKVLECFKKAI----GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             YLK+G ++ V  C  +AI     + R WVP H +     +  E+  D+DGAE  +  L
Sbjct: 410 EHYLKEGDLKMVHWCADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKFVEVL 469

Query: 448 RNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           +     + T ++  L+RTYA AGK    +  R++ +NV++  ET K+L
Sbjct: 470 KKVQKDLGTVVFEPLVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLL 517


>gi|222637397|gb|EEE67529.1| hypothetical protein OsJ_24995 [Oryza sativa Japonica Group]
          Length = 491

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 212/377 (56%), Gaps = 5/377 (1%)

Query: 93  VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152
           V EWM  +  +K +  D+AVHLDLI +I G S+AE +F NLPDK +      ALL+ Y +
Sbjct: 103 VSEWMNAKGHVKFLPKDHAVHLDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTR 162

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVT 211
                ++ A  +KM E GF+   LPYN+++ LY + GQ +KVP ++ E+K N   PD  +
Sbjct: 163 ELLVEKSLAHFQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFS 222

Query: 212 YNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           Y + + +  ++ D    E    E++ + KI  DW +Y+ + S YIK  + EKA + LK+ 
Sbjct: 223 YRICINSYGTRADFFGMENTLEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKA 282

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           E +   K+  +Y+ L+SLY ++G K EV R+W   MS   +  + +YT +++ LVKL E 
Sbjct: 283 EAKINIKDSDSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEI 342

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           E+AE +  EWES     D +VPN+LL  Y  ++ L+ AE+  +  + KG  P  T+W ++
Sbjct: 343 EEAEVLLKEWESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIV 402

Query: 391 TWGYLKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             GY +KG   K  E  K A+        W+P   +I      L ++GD++  E  +  L
Sbjct: 403 AAGYAEKGDAAKAYELTKNALCVYAPNTGWIPRPGMIEMILKYLGDEGDVEEVEIFVDLL 462

Query: 448 RNAGHVSTEIYNSLLRT 464
           + A  +++++ ++L R 
Sbjct: 463 KVAVPLNSDMTDALSRA 479


>gi|343172214|gb|AEL98811.1| pentatricopeptide repeat-containing protein, partial [Silene
           latifolia]
          Length = 359

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 198/360 (55%), Gaps = 7/360 (1%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           Y  AL++ + M  +  + +   D A+HLDLI K  G+++AEN+F +LP+  +  +   AL
Sbjct: 1   YYAALKLSDTMAWK-GMNMTISDQAIHLDLIGKTHGVAAAENYFIDLPESSKNIECYGAL 59

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 205
           L+ Y +     +AEALMEKM E G     + YN ++ LY   G  +KVP ++QE+K  + 
Sbjct: 60  LNIYCKELIPDKAEALMEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDI 119

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAA 264
                TYN+W+ A A+  D    E+   E+K+  ++  DW +YS L S+Y++ ++ EKA 
Sbjct: 120 MLQTYTYNVWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFEKAE 179

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             LKE+EKR   ++   Y  LL+LY   G   EV R+W+ +   F K  +  Y  +I  L
Sbjct: 180 NALKELEKRNTSQDLSPYQFLLTLYGKTGNLIEVYRVWRSLRLAFPKTPNVAYLNMIQRL 239

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           V L + + AE  + +WES     D R+ N+L+ AYI    L+ A+    R   +G KP  
Sbjct: 240 VTLKDLKGAEKCFADWESSCTNYDIRIANVLMGAYIKDGLLQQAKELKKRACKRGAKPNA 299

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            TWE+    YLK G+++  ++C ++A+    G   KWVP  +++ +     E+  D+DGA
Sbjct: 300 KTWEIFLEHYLKAGEVKLAVDCVERAVAIGRGDGSKWVPSSKVVNSIMGHFEQSKDVDGA 359


>gi|116309055|emb|CAH66166.1| H0107B07.5 [Oryza sativa Indica Group]
          Length = 524

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 235/468 (50%), Gaps = 45/468 (9%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR LRK   Y+ AL++ E M  +     VS D A+ LDL++K RG+++AE +F
Sbjct: 51  KWEVGVCVRRLRKQALYRPALKLSEVMARRGMNPTVS-DQAIRLDLVAKSRGIAAAEKYF 109

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+ Y ++  + +AEALM KM E  F    + YN ++ LY    Q
Sbjct: 110 LDLPETSKTHLTYGALLNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQ 169

Query: 191 LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q++K  +  PD+ TYN+W+ A A++ D +  E+   E+K+  ++ PDW +YS
Sbjct: 170 HEKVPSVIQDMKADDVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYS 229

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y+   L EKA   LKE+EK     +  AY  L++LY       EV R+W+ +   
Sbjct: 230 NLASIYVDAGLFEKAEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRN 289

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES-----------ISGTG---------- 347
             +  +  Y  +I +L  L +   AE  + EWE+             GT           
Sbjct: 290 QPRRANMSYLNMIQALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVK 349

Query: 348 ----------------DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
                           D RV N ++  YI     + A +   R   +G +    TWE+  
Sbjct: 350 ATKDKGTDGELKHPKYDIRVANAMIKEYITEGMFDQAVAVKKRAKMRGGRLNAKTWEIFM 409

Query: 392 WGYLKKGQMEKVLECFKKAI----GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             YLK+G ++ V  C  +AI     + R WVP H +     +  E+  D+DGAE  +  L
Sbjct: 410 EHYLKEGDLKMVHWCADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKFVEVL 469

Query: 448 RNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           +     + T ++  L+RTYA AGK    +  R++ +NV++  ET K+L
Sbjct: 470 KKVQKDLGTVVFEPLVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLL 517


>gi|115436132|ref|NP_001042824.1| Os01g0301700 [Oryza sativa Japonica Group]
 gi|14495231|dbj|BAB60950.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113532355|dbj|BAF04738.1| Os01g0301700 [Oryza sativa Japonica Group]
 gi|125525550|gb|EAY73664.1| hypothetical protein OsI_01547 [Oryza sativa Indica Group]
 gi|125570062|gb|EAZ11577.1| hypothetical protein OsJ_01442 [Oryza sativa Japonica Group]
 gi|215713519|dbj|BAG94656.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 504

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/460 (30%), Positives = 246/460 (53%), Gaps = 14/460 (3%)

Query: 49  VYAKRSAAIT-------MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
           +YA+ SA +        + +W  E   + + ++   VR  RK K+ KHAL++ +WME + 
Sbjct: 43  LYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDWMEAR- 101

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161
            + L    +A+ LDL+SK+ G+ +AE +F +LPD  R   T S LL+ Y +++ + +   
Sbjct: 102 GVNLELKHHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLE 161

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACA 220
           L E M     +   L YN+++ LY+   Q +K+P  + +++++   P+  +Y +   +  
Sbjct: 162 LYENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYI 221

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
             ND E+AEK   EL++    P W  Y+TL + Y K++  +KA  TLK+ E+   + +  
Sbjct: 222 MMNDIESAEKVLKELQEVNSVP-WSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVF 280

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           ++  LLS Y N G   EV RIW+ + S F K  +  Y  ++ +L KL +F+  + I+ EW
Sbjct: 281 SWHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEW 340

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           ES     D ++PNI++ AY+++  ++ AE+     + +     Y T+ +    YL+K +M
Sbjct: 341 ESSHEHYDMKIPNIIIQAYLDKGMVDKAEAMRQTTMAQD-HSNYRTFCIFAEFYLEKSKM 399

Query: 401 EKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
            + L+ +K A   V+   WVP+ +L+       E+  D+DG E     L+N G +  E Y
Sbjct: 400 NEALQVWKDAKKMVKGQDWVPE-KLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAEAY 458

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
            +L+RTY   G+    I +RM+ D V +  E  + LK  S
Sbjct: 459 EALIRTYISVGRTNPSIPQRMEVDRVDIRPEMFESLKAIS 498


>gi|302143279|emb|CBI21840.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 239/466 (51%), Gaps = 60/466 (12%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +++L  R+   +  + S    + +W++EG ++ + +L+R++R+LR  KRY HALE+ EW+
Sbjct: 34  KESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWI 93

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             ++   +  GD A+ LDLISK+ GL  AE +F   P+ +R      ALL+ Y Q K   
Sbjct: 94  RDKFYFDISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLE 153

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +AEA+M++M + GF+K  L YN ML LY   G+ +K+  ++QE+++N    D  TY + L
Sbjct: 154 KAEAIMQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRL 212

Query: 217 AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            A  + +D E  EK  ++L+    ++ DW +Y    + Y+K +L EKA   LK       
Sbjct: 213 NAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLK------- 265

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
                                                         +SL+KL + + AE 
Sbjct: 266 ----------------------------------------------NSLLKLDDMDGAEK 279

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
            ++EW S +   D RVPN+L+ AY  +  LE AE   +R + +G +P   TW+ L  GY 
Sbjct: 280 TFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYH 339

Query: 396 KKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           +  QMEK ++  KKA + + + W P+   ++A    L+ +GD++ AE+L+  LR    VS
Sbjct: 340 ENNQMEKAVDTLKKALLATSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLVS 399

Query: 455 TEIYNS-LLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
              Y+S  L  Y ++ +     + +M  D+  +DAET  V+ +  E
Sbjct: 400 A--YDSDRLVNYIRSEEPGSSTIAQMLWDHEDLDAETDGVVDLKQE 443


>gi|356542147|ref|XP_003539532.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Glycine max]
          Length = 483

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 221/410 (53%), Gaps = 11/410 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +++W EEG  V K +L  +V  L + +R+ HAL+V EWM  + + +L  G+ A  ++LIS
Sbjct: 42  LKQWVEEGREVTKLQLENLVYRLTQSRRFTHALQVLEWMSNERNYELSPGNIAKQINLIS 101

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL  AE +F  +PD        +ALL  Y ++K   EAEA+++K+ E   +      
Sbjct: 102 KVRGLEQAEKYFRGIPDAKIEFKIYAALLRCYAEHKSVEEAEAVLKKIKELHPVNITACC 161

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N ML LY   G+ +K+ +++QE+K+    +  TY + L A     D +  EK  +++   
Sbjct: 162 NMMLELYAKKGKYEKLDRLMQEMKEKDICNAGTYTIRLNAYVIATDIKGMEKLLMQM--- 218

Query: 239 KIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMG 293
           ++DP    DW +Y T  + Y K+   EK A  LK+ E     K  R+AY S+ ++Y  +G
Sbjct: 219 EVDPMATVDWYTYMTAANGYRKVHNFEKVAAMLKKSEHVARGKTKRLAYESIQTMYAIIG 278

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
            KDEV R+W   M    K  +  Y  ++SSLVKL + + AE I +EWES+    D R+PN
Sbjct: 279 NKDEVHRLWN--MCTSPKKPNKSYIRMLSSLVKLDDIDGAEKILEEWESVHENFDVRIPN 336

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           ++++AY    Q + AE++  RL+  G      TW+ L  GY     ME  ++  KKA+ +
Sbjct: 337 LMISAYCKWGQFDKAEAYIRRLLDGGKHLDGRTWDRLACGYNAGNDMENAVQAMKKAVST 396

Query: 414 -VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
            +    PD   + A    L+E+GD+D A  +L       H+S   Y+ L+
Sbjct: 397 NLAGRRPDPFTLVACVKYLKEKGDLDLALEILKLCIENSHISVTSYDGLV 446


>gi|255563224|ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538091|gb|EEF39702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 426

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 4/363 (1%)

Query: 28  LATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY 87
           LA E       D L  R+  L   KRSA   +  W  EG+TV   EL  I  ELRKL+RY
Sbjct: 63  LAEESSSKEIEDDLKSRIFRLRLPKRSATNIIHNWVSEGNTVTASELRNISNELRKLQRY 122

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147
           KHALE+ EWM    + +L+  DYA  +DL++K+ G+ +AE +FE LP  ++  +T +ALL
Sbjct: 123 KHALEISEWMVTNKEFELMDFDYATRIDLMTKVFGIDAAERYFEGLPITVKTSETYTALL 182

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TS 206
           HSY   K+  +AE L E++         L YN M+ LY+S GQ++KV  +++ELK+   +
Sbjct: 183 HSYAGVKQLGKAEELYERIKGSNLSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKIA 242

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKM-ELPEKAA 264
           PD+ TYNLW+++CA+  + +   +   E+K  +  + DW+ Y  + ++Y+K   L    +
Sbjct: 243 PDIFTYNLWISSCAAILNIDQVTRILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTES 302

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
           + + E EK   ++  + Y  L+ LY  +  KD+V +IWK +     KM +  + C++SS 
Sbjct: 303 SAVVEAEKSITQREWITYDFLIILYAGLRDKDKVDQIWKSLRMTKQKMTNRNFVCILSSY 362

Query: 325 VKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           + LG  ++A  + D+W+  + T  D    + LL A+      E+A  F+  L+ +   P 
Sbjct: 363 MMLGHLKEAGEVLDQWKKSTTTDFDLSACSRLLDAFSGSGLTEIANDFHMLLIERNCDPT 422

Query: 384 YTT 386
             T
Sbjct: 423 NLT 425


>gi|343172216|gb|AEL98812.1| pentatricopeptide repeat-containing protein, partial [Silene
           latifolia]
          Length = 359

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 196/360 (54%), Gaps = 7/360 (1%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           Y  AL++ + M  +  + +   D A+HLDLI K  G+++AEN+F +LP+  +  +   AL
Sbjct: 1   YYAALKLSDTMAWK-GMNMTINDQAIHLDLIGKTHGVAAAENYFIDLPESSKNIECYGAL 59

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 205
           L+ Y +     +AEALMEKM E G     + YN ++ LY   G  +KVP ++QE+K  + 
Sbjct: 60  LNIYCKELIPDKAEALMEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDI 119

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAA 264
                TYN+W+ A A+  D    E+   E+K+  ++  DW +YS L S+Y++ ++ +KA 
Sbjct: 120 MLQTYTYNVWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFDKAE 179

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             LKE+EKR   +    Y  LL+LY   G   EV R+W+ +   F K  +  Y  +I  L
Sbjct: 180 NALKELEKRNTSRELSPYQFLLTLYGKTGNLIEVYRLWRSLRLAFPKTPNVAYLNMIQRL 239

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           V L + + AE  + +WES     D R+ N+L+ AYI    L+ A+    R   +G KP  
Sbjct: 240 VTLKDLKGAEKCFADWESSCTNYDIRIANVLMGAYIKDGSLQQAKELKKRACKRGAKPNA 299

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            TWE+    YLK G+++  ++C ++A+    G   KWVP   ++ +     E+  D+DGA
Sbjct: 300 KTWEIFLEHYLKAGEVKLAVDCVERAVAIGRGDGSKWVPSTNVVNSIMGHFEQSKDVDGA 359


>gi|242091818|ref|XP_002436399.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
 gi|241914622|gb|EER87766.1| hypothetical protein SORBIDRAFT_10g001830 [Sorghum bicolor]
          Length = 536

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 235/480 (48%), Gaps = 57/480 (11%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR +R+   Y+ AL++ E M  +     VS D A+ LDLI+K RG+++AE +F
Sbjct: 51  KWEVGVCVRRMRRNALYRPALKLSEVMTRRGMNPTVS-DQAICLDLIAKSRGIAAAEKYF 109

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+SY +   + +AE+LM KMSE  F    +P+N ++ +Y    Q
Sbjct: 110 LDLPETSKTHLTYGALLNSYCKELMTEKAESLMAKMSELNFAFTAMPFNSLMTMYTKVNQ 169

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q +K +   P V TYN+W+ A A+ ND    E+   E+K+  ++ PDW +YS
Sbjct: 170 PEKVPGIIQYMKADDVLPHVFTYNVWMRALAALNDIPGVERVIEEMKRDGRVAPDWTTYS 229

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y+   L EKA   LKE+EKR    +  AY  L++LY       EV R+W+ +   
Sbjct: 230 NLASIYVDAGLFEKAEAALKELEKRNTSNDVEAYQFLITLYGRTQNLVEVHRVWRSLKRN 289

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES-------------------------- 342
             +M +  Y  +I  L  L +   AE  + EWE+                          
Sbjct: 290 NPRMANMSYLNMIQVLANLKDLPAAEACFKEWEARHIHPPKTKAKDSGADNISTTDPESS 349

Query: 343 ---------ISGTGDP--------------RVPNILLAAYINRNQLEMAESFYNRLVTKG 379
                    I  TGD               RV N ++ AYI    L+ A +   R    G
Sbjct: 350 SNLPNNQSGIKETGDEAAKDLQLKHPKYDIRVANAMIKAYIAEGMLDKAVAVKKRAKMHG 409

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLEC----FKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            +    TWE+    +LK G ++    C     KK   S R WVP   +     +  EE  
Sbjct: 410 GRLNAKTWEIFMEHHLKTGDLKMAHWCADRAMKKGHSSGRIWVPPPAVTETLMSYFEENK 469

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           D+DGAE  + +L+     + T ++  LLRTYA AGK    + +R++ +NV++  ET ++L
Sbjct: 470 DVDGAEQYVESLKKVQKDLGTPVFEPLLRTYAAAGKKFPGMRQRLKIENVEVGEETDQLL 529


>gi|147766620|emb|CAN73943.1| hypothetical protein VITISV_032243 [Vitis vinifera]
          Length = 448

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 219/435 (50%), Gaps = 20/435 (4%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           +L  R+ ++   K S +  + +W EEG TV K +L  +VR ++  +R+ HALE+ +WM  
Sbjct: 23  SLYDRIQAVRDPKASISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMTD 82

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
           +    L   D A+ LDLIS +             P    G D   ALL  YV+ K   +A
Sbjct: 83  RRYFTLTPSDAAIRLDLISMV-------------PWTXAGXDAYGALLSGYVREKSVEKA 129

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAA 218
           EA M+KM E  F     PYN ++NLY   G   K+  ++QE++    P D  T    + A
Sbjct: 130 EATMQKMREMDFATSSFPYNMLINLYSQTGNHGKIEALIQEMQXKAIPCDAFTVXNLMVA 189

Query: 219 CASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
             + +D    EK    +++   I  DW  YS   S Y+K+ L +KA   LK++E      
Sbjct: 190 YVAASDISAMEKXLNRMEEDPHISVDWNIYSVAASGYLKVGLIDKALEMLKKIESNRPHL 249

Query: 278 NRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            R  A+  LLSLY    +K E+ R+W      +       Y+C+I+ L KL + E AE I
Sbjct: 250 ERXSAFKXLLSLYARTXHKQELYRVWNLYKPSYE--YPEAYSCMITCLTKLDDIEGAEKI 307

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + EWE      D RV N LL+AY  R   + AES  N+++ + + P  +TW +L  GY++
Sbjct: 308 FQEWECECTMYDFRVLNRLLSAYCKRCLFDKAESLVNKVIEERM-PYASTWNILAKGYVE 366

Query: 397 KGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             QM K +E  KKAI   RK W P+  ++ A    LE QG+++  E +    +N G    
Sbjct: 367 DKQMPKAVEMLKKAISVGRKGWRPNSIILDACIEYLEGQGNLEEIEEIARLCKNLGIPDG 426

Query: 456 EIYNSLLRTYAKAGK 470
           +I++ LLRT A   K
Sbjct: 427 DIHHRLLRTSAAGEK 441


>gi|242073288|ref|XP_002446580.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
 gi|241937763|gb|EES10908.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
          Length = 415

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 194/358 (54%), Gaps = 9/358 (2%)

Query: 27  GLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKR 86
            +A    G    D L  R+  L  AKRSA   + KW  EG      EL RI R+L +++R
Sbjct: 49  AVAVAATGEEDGDDLRSRIFRLGLAKRSATAALDKWSGEGRAAPAAELRRIARDLSRVRR 108

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           YKHALEV +WM+  ++  L   DY + +DLI+K+ G S+AE+FFE LP   +  +  +AL
Sbjct: 109 YKHALEVADWMKTHHESDLSESDYGMRIDLITKVFGASAAEDFFEKLPPGAKSLEAYTAL 168

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NT 205
           LHSY ++K + +AE L E+M +       L YN M+ LYIS G+LDKV  + +ELK+ N 
Sbjct: 169 LHSYGRSKMTDKAERLFERMKDANLSMDALVYNEMMTLYISVGELDKVEIIAEELKRQNV 228

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPE 261
           SPD+ TYNL ++A A+  D E  +    E+ K   DP+    W  Y  L S+Y+      
Sbjct: 229 SPDLFTYNLRVSAAAASMDLEGFKGILDEMSK---DPNSKEGWTLYRNLASVYVDASQLV 285

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            +  +L E E +  ++  + Y  L+ L+  +G ++ +  IWK M+    +M    Y CVI
Sbjct: 286 GSGNSLVEAEAKISQREWITYDFLVILHAGLGNQERIKDIWKSMVMTSQRMTSRNYICVI 345

Query: 322 SSLVKLGEFEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
           SS +  G+ + A  I D+W+ S +   D    N LL A ++    + A+ F   ++ K
Sbjct: 346 SSYLMCGQLKDAGEIVDQWQRSKAPEFDISACNRLLDALLSAGLTDTADRFRELMLQK 403


>gi|357163843|ref|XP_003579864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Brachypodium distachyon]
          Length = 422

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 196/359 (54%), Gaps = 13/359 (3%)

Query: 31  EKKGA----GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKR 86
           +++GA    G  D L   +  L  AKRSA   + +W  EG      EL R+ R+L + +R
Sbjct: 56  DQRGAVVAVGEDDDLRSLIFRLRLAKRSATEALDRWAGEGRAAPAPELRRVARDLSRARR 115

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           YKHALEV EWM+  ++  L   DY V +DLI+K+ G ++AE+FFE LP + +  +  +AL
Sbjct: 116 YKHALEVAEWMKTHHESDLSENDYGVRIDLITKVFGANAAEDFFEKLPSEAKSLEAYTAL 175

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NT 205
           LHSY ++K + +AE L E+M +       L YN M+ LYIS G+LDKVP + +ELK+ N 
Sbjct: 176 LHSYARSKMTDKAERLFERMKDADLSIDVLVYNEMMTLYISVGELDKVPAVAEELKRQNV 235

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPE 261
           SPD+ TYNL ++A A+  D E  +    E+ K   DP+    W  Y  L ++Y+      
Sbjct: 236 SPDLFTYNLRISASAASMDLEIFKGILDEMSK---DPNSNEGWTLYRNLATIYVNASQLV 292

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            +  +L E E +  ++  + Y  L+ L+T +G  + V  IWK M     +M    Y CV+
Sbjct: 293 SSGNSLVEAEAKISQREWITYDFLILLHTGLGNLERVKDIWKSMQMTSQRMTSRNYICVL 352

Query: 322 SSLVKLGEFEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           SS +  G+ + A+ I D+W+ S +   D    N L  A +     + A+SF   ++ K 
Sbjct: 353 SSYLMCGQLKDAKEIVDQWQRSKAPEFDISACNRLFDALLGAGFTDTADSFRELMLQKS 411


>gi|255553777|ref|XP_002517929.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542911|gb|EEF44447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/423 (33%), Positives = 221/423 (52%), Gaps = 9/423 (2%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           R+++L   K S    + +W  EG+TV K  L  +V  ++   R+ HAL++ +WM  + ++
Sbjct: 13  RIVNLKDPKASVIPVLDQWVNEGNTVRKALLRSLVNLMKGFNRFNHALQISQWMADRPNL 72

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
            L   D  V L+L+ +I G + AE +FE LPDK +  +   ALL  YVQ     +AEA+M
Sbjct: 73  TLSPSDVVVRLELVHRIYGSAHAEKYFEKLPDKFKCREVYCALLSGYVQESSVRKAEAIM 132

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQ 222
           E+M   G      PYN ++NLY  NG  +K+  ++QE++ N       T +  +AA  + 
Sbjct: 133 EEMRAKGMANSCFPYNLLINLYPKNGDYEKINMLIQEMETNGVVRGAYTMSNLMAAYVAA 192

Query: 223 NDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-RTCRKNRV 280
           ++    E+   +++K  ++  DW  YS   S Y+K  L EKA T L+++E      K   
Sbjct: 193 SNISGMERILNQIEKDPQLGNDWRVYSVAASGYLKFGLIEKALTMLRKLEDVMPLEKKTS 252

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           A+  L++LY   G +DE+  +W     L  ++ +     +ISSL KL + + AE I+ EW
Sbjct: 253 AFDILVTLYGKTGKRDELYLVWNTYKPLI-ELKETSVMTMISSLSKLDDIKGAEKIFREW 311

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           ES     D RV N LL AY  R  L            K   PC ++W +L  GY++  QM
Sbjct: 312 ESQCMMYDFRVLNTLLFAYC-RKGLLKKAEAAVEKAAKDRTPCASSWGILAMGYIEHNQM 370

Query: 401 EKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEH---LLVTLRNAGHVSTE 456
            K +E  KKA+  S + W P+   +TA  N LE+QGD++G E    LL +L     V+ E
Sbjct: 371 YKAVEMLKKALSISGQGWRPNSMTLTACLNFLEKQGDVEGVEEVTKLLKSLEPLNEVTKE 430

Query: 457 IYN 459
           + N
Sbjct: 431 LGN 433


>gi|223974825|gb|ACN31600.1| unknown [Zea mays]
          Length = 515

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 236/459 (51%), Gaps = 4/459 (0%)

Query: 41  LGRRLLSLVYA-KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           L RRL +L  A + S +  + KW  EG      +L + V+ELRK KR+ HALE+ +WM  
Sbjct: 50  LYRRLSALGSAGEGSVSRVLNKWVREGGATRSDDLVKHVKELRKYKRHAHALELMDWMVN 109

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
              + +   ++A+ L+LI K+RGL +AEN+F NLPD  +   T  +LL  Y   K   +A
Sbjct: 110 ARGMNMSHTNHAIRLELIYKVRGLEAAENYFANLPDPAKNHRTYGSLLSCYCSAKMEEKA 169

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA 218
             L  +M E G     LP N++++LY+   Q  KV  + +E+K KN  P+ +T  + + +
Sbjct: 170 TNLYRQMDELGIWSSTLPINNLMSLYMKLDQYRKVVSLFEEMKLKNVKPNSLTCCILMTS 229

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRK 277
            A+ N  +  E+   E+ +  +   W +YSTL S+Y+      KA + LK++E   +   
Sbjct: 230 YAALNKIDDIEELLKEMVEKDVTLGWSAYSTLASIYVNAGQFGKAESALKKLEGLISAHD 289

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           +R  +  LLSLY ++G   EV R+W  + S F+K+ +  Y  ++ +L KL + ++ + IY
Sbjct: 290 DRQPFDFLLSLYASLGNLSEVNRVWNVIKSKFSKVTNTSYLGMLHALYKLNDIDRMKQIY 349

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            EWES   T D ++ N+++ +++     E AE    ++   G +    T EL    Y+  
Sbjct: 350 MEWESNYETFDVKLTNMMIRSHLKVGMTEEAEMLVEKVKENGAEFDTKTCELFLDHYMGT 409

Query: 398 GQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
             M   L   +      +K    D   I       EE  D DGAE     LR  G +  +
Sbjct: 410 EDMNSALNWLENMTKLSKKAEKLDQDRIYKFQKYFEEHKDADGAERFCNCLRTLGCIDGK 469

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            Y SLLRTY  AGK    + ++++ D V++  +  K+LK
Sbjct: 470 AYESLLRTYLAAGKKSCSLRQQIKNDKVEICYDIGKLLK 508


>gi|359484901|ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial [Vitis vinifera]
          Length = 396

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 7/375 (1%)

Query: 12  AARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHK 71
           A R+ S++  +   L    E   +   D L  R+  L   KRS    +++W  EG+ VH 
Sbjct: 20  AFRLLSSRTLRSEVL---EESPNSPENDDLKSRIFKLRLPKRSVTNVLQRWLGEGNQVHI 76

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
            EL  I +ELR+ +RYKHALE+ EWM    + +L   D AV +DL++++ G+ +AE +FE
Sbjct: 77  SELRNISKELRRAQRYKHALEISEWMVSHDEFELSDSDNAVRIDLMTRVFGIDAAERYFE 136

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            LP   +  +T +ALLHSY   K + +AE L E++ E       L YN M+ LY+S GQ+
Sbjct: 137 GLPSAAKTSETYTALLHSYAGAKLAEKAEELYERIKESNVPLNILLYNEMMTLYMSVGQV 196

Query: 192 DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYST 249
           +KV  +++ELK+    PD+ TYNLW+++CA+  D +   +   E+       D W+ Y  
Sbjct: 197 EKVSLVVEELKRQKVVPDLFTYNLWVSSCAATLDIDGVRRILKEMSNNSSANDGWVRYRN 256

Query: 250 LTSLYIKM-ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           L ++YI    L   A+ ++ E    T +++ + Y  L+ LY  +G KD++ +IWK +   
Sbjct: 257 LANIYIMAGHLVNSASNSVVEAGTNTTQRDWITYDFLIILYAGLGNKDKIDQIWKSLKMT 316

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEM 367
             K+    Y C++SS V LG  +    + DEW+  + T  D  V   LL A+     +E 
Sbjct: 317 KQKIKSRSYVCILSSYVMLGHIKDVGIVIDEWKKSTTTDFDISVFYRLLDAFAELRLIEE 376

Query: 368 AESFYNRLVTKGIKP 382
           AE+F+  L+ K   P
Sbjct: 377 AETFHKLLIRKSCLP 391


>gi|21740710|emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa Japonica Group]
 gi|116310079|emb|CAH67100.1| H0818E04.17 [Oryza sativa Indica Group]
          Length = 430

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 190/350 (54%), Gaps = 9/350 (2%)

Query: 35  AGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC 94
            G  D L  R+  L  AKRSA   + +W  EG      EL  I R+L +  RYKHALEV 
Sbjct: 72  GGDEDDLRSRVFRLRLAKRSATAALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVA 131

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154
           EWM+  ++  L   DY + +DLI+++ G ++AE+FFE LP  ++  +  +ALLHSY ++K
Sbjct: 132 EWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSK 191

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYN 213
            + +AE L ++M +       L YN M+ LYIS G+LDKVP + +ELK+   SPD+ TYN
Sbjct: 192 MTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYN 251

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKE 269
           L ++A A+  D E  +    E+ K   DP+    W  Y  L  +Y+       +  +L E
Sbjct: 252 LRISASAASMDLEGFKGILDEMSK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVE 308

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
            E +  R+  + Y  L+ L+T +G +D +  IWK M+    +M    Y CV+SS +  G+
Sbjct: 309 AEAKISRREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQ 368

Query: 330 FEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            + A  + D+W+ S +   D    N L  A++N    + A SF   ++ K
Sbjct: 369 LKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQK 418


>gi|357110627|ref|XP_003557118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g60770-like [Brachypodium distachyon]
          Length = 536

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 233/481 (48%), Gaps = 58/481 (12%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR LR+ + Y+ AL++ E M  +  +    GD A+ LDL++K RG+++AE +F
Sbjct: 51  KWEVGVCVRRLRRQELYRPALKLTEVM-ARRGMNPTVGDQAIRLDLVAKSRGIAAAEKYF 109

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+ Y +   + +AEALMEKM E  F    + YN ++ LY    Q
Sbjct: 110 MDLPETSKTHLTYGALLNCYCKESMTEKAEALMEKMKELNFAFTAMSYNSLMTLYTKVNQ 169

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q++K +   PDV TYN+W+ + A++ D    E+   E+K+  ++ PDW +YS
Sbjct: 170 PEKVPSIIQDMKADDVLPDVYTYNVWMRSLAARQDISGVERVIEEMKRDGRVVPDWTTYS 229

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y++  L EKA   LKE+EKR    +  AY  L++LY       EV  +W+ +   
Sbjct: 230 NLASIYVEAGLFEKAEAALKELEKRNTSNDLEAYQFLITLYGRTQNLVEVHHVWRSLKRN 289

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES-------------------------- 342
             +  +  Y  +I  L  L +   AE  + EWE+                          
Sbjct: 290 NPRKANMSYLNMIQVLANLKDLPAAEACFKEWEARYIRPPKTKAIDAVTTETSKLDQESS 349

Query: 343 ----------ISGTGDP--------------RVPNILLAAYINRNQLEMAESFYNRLVTK 378
                       GT D               RV N L+ AY+    L+ A +   R   +
Sbjct: 350 TTNASNNDSDAKGTEDKGMEEIDMKHPKYDIRVANALMKAYVTEGMLDKAVALKKRAKMR 409

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHRLITAAYNKLEEQ 434
           G +    TWE+    Y+K G ++    C  +AI     S R WVP   +        E++
Sbjct: 410 GGRLNSKTWEIFMEHYIKVGDLKNAHWCTDRAIKKGHSSGRIWVPPRDVTETLMGYFEKK 469

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKV 493
            D+DGAE  +  L+     + T ++  L+RTYA AGK    +  R++ +NV++  E  K+
Sbjct: 470 KDVDGAEKFVEVLKKVQKDLGTVVFEPLVRTYAAAGKKFPGMRHRLKIENVEVSEEIAKL 529

Query: 494 L 494
           +
Sbjct: 530 V 530


>gi|125590560|gb|EAZ30910.1| hypothetical protein OsJ_14991 [Oryza sativa Japonica Group]
          Length = 471

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 190/350 (54%), Gaps = 9/350 (2%)

Query: 35  AGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC 94
            G  D L  R+  L  AKRSA   + +W  EG      EL  I R+L +  RYKHALEV 
Sbjct: 113 GGDEDDLRSRVFRLRLAKRSATAALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVA 172

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154
           EWM+  ++  L   DY + +DLI+++ G ++AE+FFE LP  ++  +  +ALLHSY ++K
Sbjct: 173 EWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSK 232

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYN 213
            + +AE L ++M +       L YN M+ LYIS G+LDKVP + +ELK+   SPD+ TYN
Sbjct: 233 MTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYN 292

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKE 269
           L ++A A+  D E  +    E+ K   DP+    W  Y  L  +Y+       +  +L E
Sbjct: 293 LRISASAASMDLEGFKGILDEMSK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVE 349

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
            E +  R+  + Y  L+ L+T +G +D +  IWK M+    +M    Y CV+SS +  G+
Sbjct: 350 AEAKISRREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQ 409

Query: 330 FEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            + A  + D+W+ S +   D    N L  A++N    + A SF   ++ K
Sbjct: 410 LKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQK 459


>gi|413953408|gb|AFW86057.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
          Length = 596

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 235/480 (48%), Gaps = 57/480 (11%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR +R+   Y+ +L++ E M  +     VS D A+ LDLI+K RG+++AE +F
Sbjct: 111 KWEVGVCVRRMRRNALYRPSLKLSEVMARRGMNPTVS-DQAIRLDLIAKSRGIAAAEKYF 169

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+SY +   + +AE+LMEKM E  F    + +N ++ +Y    Q
Sbjct: 170 LDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQ 229

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q++K +   PDV TYN+W+ A A+  D    E+   E+K+  ++ PDW +YS
Sbjct: 230 AEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYS 289

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y++  + EKA   LKE+EKR    +  AY  L++LY       EV R+W+ +   
Sbjct: 290 NLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRD 349

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---------ISGTG-------DP--- 349
             +M +  Y  +I  L  L +   AE  + EWE+           G+G       DP   
Sbjct: 350 NPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHIHPPKTNTKGSGADNTPGADPKSP 409

Query: 350 ------------------------------RVPNILLAAYINRNQLEMAESFYNRLVTKG 379
                                         RV N ++ AYI    L+ A +   R   +G
Sbjct: 410 SNPPNNQSGTKETGDETAEDLQPKHPKYDIRVANAMIKAYITEGMLDKAVAMKKRAKMRG 469

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLEC----FKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            +    TWE+    YLK G ++    C     KK   S R WVP   +     +  EE  
Sbjct: 470 GRLNAKTWEIFMEHYLKTGDLKMAHWCADRAMKKGHSSGRIWVPPPAVTETLMSYFEENK 529

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           D+DGAE  +  L+     +   ++  L+RTYA AGK    + +R++ +NV++   T ++L
Sbjct: 530 DVDGAERYVGALKKVQKDLGAPVFEPLVRTYAAAGKKFPGMRQRLKIENVEVGEGTAQLL 589


>gi|356547012|ref|XP_003541912.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20710, mitochondrial-like [Glycine max]
          Length = 482

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 219/415 (52%), Gaps = 12/415 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S +  + +W EEG  V K +L  +   L + +R+ HAL+V EWM  + + +L  G  A  
Sbjct: 37  SVSPILNQWVEEGREVTKLQLEDLAYRLTQSRRFTHALQVLEWMSNERNYELSPGSIAKQ 96

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           ++LISK+ GL  AE +F  +PD        +ALL  Y ++K   EAEA+M+ + E   + 
Sbjct: 97  INLISKVHGLEQAERYFRGIPDDKIEFKIYAALLRCYAEHKSVEEAEAVMKXIKELHPVN 156

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
                N ML LY   G+ +K+ +++QE+K+    +  TY + L A     D +  EK  +
Sbjct: 157 ITPCCNMMLELYAKKGKYEKLDRLMQEMKEKDICNASTYTIRLNAYVVVTDIKGMEKLLM 216

Query: 234 ELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYT 290
           +++   +   DW +Y T  + Y ++   EK A  LK+ E    R N  R+A+ S+ ++Y 
Sbjct: 217 QMEADPVATVDWYTYMTAANGYRRVHNFEKVAEMLKKSE-HLARGNTRRLAFESIQTMYA 275

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +G KDEV R+W    SL  K N++ Y  ++SSL KL E + AE I +EWES     D R
Sbjct: 276 IIGNKDEVYRLWNMCTSL-KKPNNSSYIRMLSSLAKLDEIDGAEKILEEWESKYANFDVR 334

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           +PN++++AY    Q + AE++  RL+  G +    TW+ L  GY     MEK ++  KKA
Sbjct: 335 IPNLMISAYCKWGQFDKAEAYIRRLLDGGKQLDGRTWDRLACGYKAGNDMEKAVQAMKKA 394

Query: 411 I----GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
           +    G  R   PD   + A    L+E+GD+D A  +L       H+S   Y+ L
Sbjct: 395 VSKNLGGRR---PDPFTLVACVKYLKEKGDLDLALEILKLCIENSHISVTSYDGL 446


>gi|293336604|ref|NP_001168600.1| uncharacterized protein LOC100382384 [Zea mays]
 gi|223949449|gb|ACN28808.1| unknown [Zea mays]
          Length = 536

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 235/480 (48%), Gaps = 57/480 (11%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+   VR +R+   Y+ +L++ E M  +     VS D A+ LDLI+K RG+++AE +F
Sbjct: 51  KWEVGVCVRRMRRNALYRPSLKLSEVMARRGMNPTVS-DQAIRLDLIAKSRGIAAAEKYF 109

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +LP+  +   T  ALL+SY +   + +AE+LMEKM E  F    + +N ++ +Y    Q
Sbjct: 110 LDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKELNFAFTAMSFNSLMTMYTKVNQ 169

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYS 248
            +KVP ++Q++K +   PDV TYN+W+ A A+  D    E+   E+K+  ++ PDW +YS
Sbjct: 170 AEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYS 229

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S+Y++  + EKA   LKE+EKR    +  AY  L++LY       EV R+W+ +   
Sbjct: 230 NLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRD 289

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---------ISGTG-------DP--- 349
             +M +  Y  +I  L  L +   AE  + EWE+           G+G       DP   
Sbjct: 290 NPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHIHPPKTNTKGSGADNTPGADPKSP 349

Query: 350 ------------------------------RVPNILLAAYINRNQLEMAESFYNRLVTKG 379
                                         RV N ++ AYI    L+ A +   R   +G
Sbjct: 350 SNPPNNQSGTKETGDETAEDLQPKHPKYDIRVANAMIKAYITEGMLDKAVAMKKRAKMRG 409

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLEC----FKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            +    TWE+    YLK G ++    C     KK   S R WVP   +     +  EE  
Sbjct: 410 GRLNAKTWEIFMEHYLKTGDLKMAHWCADRAMKKGHSSGRIWVPPPAVTETLMSYFEENK 469

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           D+DGAE  +  L+     +   ++  L+RTYA AGK    + +R++ +NV++   T ++L
Sbjct: 470 DVDGAERYVGALKKVQKDLGAPVFEPLVRTYAAAGKKFPGMRQRLKIENVEVGEGTAQLL 529


>gi|125575304|gb|EAZ16588.1| hypothetical protein OsJ_32060 [Oryza sativa Japonica Group]
          Length = 475

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 216/404 (53%), Gaps = 7/404 (1%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM  +  + L  GD A  L+LISK+ GL  A  +F+ +P+++R      +LL  Y + ++
Sbjct: 69  WMTERRHLHLSPGDVAYRLELISKVHGLDKAVEYFDAVPNQLRELQCYGSLLRCYAEAER 128

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNL 214
             +AE L E M   G +     YN M+NLY   GQ+++V  M + +++    PD+ T + 
Sbjct: 129 VEKAEELFENMRGMG-MANSYAYNAMMNLYSQIGQVERVDSMYKAMEEGGIVPDIFTIDN 187

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR- 273
            ++A A   D E  EK  LE         W S++ +  +++K  + E+A    +E EKR 
Sbjct: 188 LVSAYADVEDVEAIEKV-LEKASCNNLMSWHSFAIVGKVFMKAGMQERALQAFQESEKRI 246

Query: 274 TCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFE 331
           T RK+ RVAY  LL++Y ++    EV RIW    S + A   +  Y C IS L+K+ +  
Sbjct: 247 TARKDGRVAYGFLLTMYADLQMDSEVDRIWDVYRSKVPASACNTMYMCRISVLLKMNDIV 306

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            AE  Y+EWES     D R+ NILL AY     +E AE+  ++ + KG      TW  L 
Sbjct: 307 GAEKAYEEWESKHVYHDSRLINILLTAYCKEGLMEKAEALVDQFIKKGRTLFSNTWYKLA 366

Query: 392 WGYLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
            GY K GQ+ K  +  KKA+ S   +W PD   +  + N   EQ +++ AE +   L+  
Sbjct: 367 GGYFKVGQVSKAADLTKKALASASNEWKPDLANVLMSINYFAEQKNVEAAEEMASLLQRL 426

Query: 451 GHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
             ++ ++Y+ LL+TY  AG+    +++RM+KD ++ D ET K+L
Sbjct: 427 VPLTRDVYHGLLKTYVNAGEPASDLLDRMKKDGIEADEETDKIL 470


>gi|42570837|ref|NP_973492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|119935915|gb|ABM06033.1| At2g20710 [Arabidopsis thaliana]
 gi|330251966|gb|AEC07060.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 395

 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 211/385 (54%), Gaps = 15/385 (3%)

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
           ++  GD A+ LDLI+K+ GL  AE FFE +P + R      ALL+ Y   K   +AE + 
Sbjct: 8   EISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVF 67

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQ 222
           ++M E GFLK  LPYN MLNLY+  G+   V ++L+E++  T  PD+ T N  L A +  
Sbjct: 68  QEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVV 127

Query: 223 NDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRV 280
           +D E  EK  +  +  + +  DW +Y+   + YIK  L EKA   L++ E+    +K + 
Sbjct: 128 SDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKH 187

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEFEKAENIY 337
           AY  L+S Y   G K+EV R+W    SL+ +++   +  Y  VIS+L+K+ + E+ E I 
Sbjct: 188 AYEVLMSFYGAAGKKEEVYRLW----SLYKELDGFYNTGYISVISALLKMDDIEEVEKIM 243

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +EWE+     D R+P++L+  Y  +  +E AE   N LV K      +TWE L  GY   
Sbjct: 244 EEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMA 303

Query: 398 GQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           G+MEK +E +K+AI  S   W P   ++ +  + LE Q D++G   +L  L   GH+S  
Sbjct: 304 GKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS-- 361

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQK 481
            Y+ LL     AG +   IV+ M K
Sbjct: 362 -YDQLLYDMNGAG-LSWKIVDAMGK 384


>gi|125548508|gb|EAY94330.1| hypothetical protein OsI_16098 [Oryza sativa Indica Group]
          Length = 430

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 190/350 (54%), Gaps = 9/350 (2%)

Query: 35  AGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC 94
            G  D L  R+  L  AKRSA   + +W  EG      EL  I R+L +  RYKHALEV 
Sbjct: 72  GGDEDDLRSRVFRLRLAKRSATAALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVA 131

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154
           EWM+  ++  L   DY + +DLI+++ G ++AE+FFE LP  ++  +  +ALLHSY ++K
Sbjct: 132 EWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSK 191

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYN 213
            + +AE L ++M +       L YN M+ LYIS G+LDKVP + +ELK+   SPD+ TYN
Sbjct: 192 MTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYN 251

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKE 269
           L ++A A+  D E  +    E+ K   DP+    W  Y  L  +Y+       +  +L E
Sbjct: 252 LRISASAASMDLEGFKGILDEMSK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVE 308

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
            E +  ++  + Y  L+ L+T +G +D +  IWK M+    +M    Y CV+SS +  G+
Sbjct: 309 AEAKISQREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQ 368

Query: 330 FEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            + A  + D+W+ S +   D    N L  A++N    + A SF   ++ K
Sbjct: 369 LKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQK 418


>gi|125559056|gb|EAZ04592.1| hypothetical protein OsI_26742 [Oryza sativa Indica Group]
          Length = 402

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 217/395 (54%), Gaps = 13/395 (3%)

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +  +K +  D+AVHLDLI +I G S+AE +F NLPDK +      ALL+ Y +    
Sbjct: 1   MNAKGHVKFLPKDHAVHLDLIGEIHGSSAAETYFNNLPDKDKTEKPYGALLNCYTRELLV 60

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
            ++ A  +KM E GF+   LPYN+++ LY + GQ +KVP ++ E+K N   PD  +Y + 
Sbjct: 61  EKSLAHFQKMKELGFVFSTLPYNNIMGLYTNLGQHEKVPSVIAEMKSNGIVPDNFSYRIC 120

Query: 216 LAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
           + +  ++ D    E    E++ + KI  DW +Y+ + S YIK  + EKA + LK+ E + 
Sbjct: 121 INSYGTRADFFGMENTLEEMECEPKIVVDWNTYAVVASNYIKGNIREKAFSALKKAEAKI 180

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
             K+  +Y+ L+SLY ++G K EV R+W   MS   +  + +YT +++ LVKL E E+AE
Sbjct: 181 NIKDSDSYNHLISLYGHLGDKSEVNRLWALQMSNCNRHINKDYTTMLAVLVKLNEIEEAE 240

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +  EWES     D +VPN+LL  Y  ++ L+ AE+  +  + KG  P  T+W ++  GY
Sbjct: 241 VLLKEWESSGNAFDFQVPNVLLTGYRQKDLLDKAEALLDDFLKKGKMPPSTSWAIVAAGY 300

Query: 395 LKKGQMEKVLECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
            +KG   K  E  K A+        W+P   +I      L ++GD++  E  +  L+ A 
Sbjct: 301 AEKGDAAKAYELTKNALCVYAPNTGWIPRPGMIEMILKYLGDEGDVEEVEIFVDLLKVAV 360

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 486
            +++++ ++L R   +         E+  KD V+M
Sbjct: 361 PLNSDMTDALSRARMRE--------EKKVKDAVRM 387


>gi|297806979|ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317210|gb|EFH47632.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 410

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 198/343 (57%), Gaps = 9/343 (2%)

Query: 2   FLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRK 61
           F+R+  ++   ++ ++  AA   +L   +E+K     D L  R+  L   KRSA   + +
Sbjct: 24  FIRNAESSSGFSKSYNADAAIGGSLVEESEEK-----DDLKSRIFRLRLPKRSATTVLER 78

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
           W  EG+ +   EL  I +ELR+ +R+KHALEV EWM    ++K+   DYA  +DLISK+ 
Sbjct: 79  WVGEGNQITINELREISKELRRTRRHKHALEVTEWMVQHEELKVSDADYASRIDLISKVF 138

Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNH 180
           G+ +AE +FE L    +  +T ++LLH+Y  +K++  AEAL +++ E   L    + YN 
Sbjct: 139 GIDAAERYFEGLHIDAKTTETYTSLLHAYAGSKQTERAEALFKRIIETDSLSFGAITYNE 198

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-T 238
           M+ LY+S GQ++KVP+++Q LK K  SPD+ TYNLWL++CA+  + +   +   E++   
Sbjct: 199 MMTLYMSVGQVEKVPEVIQVLKHKKVSPDIFTYNLWLSSCAATFNIDELRRILEEMRHDA 258

Query: 239 KIDPDWISYSTLTSLYIKMELPEKA-ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             +  W+ Y  LTS+YI       A +T+  E EK   ++  + Y  L+ L+T +G K  
Sbjct: 259 SSNEGWVRYINLTSIYINSSRVTNAESTSPVEAEKSISQREWITYDFLMILHTGLGNKVM 318

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           + +IWK + +   K++   Y CV+SS + LG   +AE I  +W
Sbjct: 319 IDQIWKSLGNTNQKLSSRSYICVLSSYLMLGHLREAEEIIHQW 361


>gi|356565994|ref|XP_003551220.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g60770-like [Glycine max]
          Length = 469

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 219/435 (50%), Gaps = 36/435 (8%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           K+E+N  +++L   K Y+ AL++ E M  +  IK V  D+A+HLDL++K RG+++A+N+F
Sbjct: 64  KWEVNDTLKKLDDRKLYQLALKLSETMAKRNMIKTVR-DHAIHLDLLAKARGITAAKNYF 122

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            NLP+  +      A+L+ Y +     +AE  MEKM E       +PYN ++ LY   GQ
Sbjct: 123 VNLPESAKNHLCHGAILNCYCKEPMIEKAEGFMEKMKELSLPLSSMPYNSLIMLYTKVGQ 182

Query: 191 LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +KV  ++QE+K  N   D  TYN+W+ A A+ ND  + E+   E+              
Sbjct: 183 PEKVSSLIQEMKTSNIMLDSYTYNVWMRALAAVNDISSVERVHDEM-------------- 228

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
                            L E+EKR   K+  AY  L++ Y       EV R+W+ +   F
Sbjct: 229 ---------------MALTELEKRNAFKDLTAYQFLITFYGXTSNLYEVFRVWRSLRLAF 273

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            K  +  Y  +I  LVK  +    E  + E E    T D RV N+L+ AY   + LE AE
Sbjct: 274 PKTANISYLNMIRVLVKSKDLLGEEKCFXEXECGCPTYDIRVVNVLIRAYAKLDMLEKAE 333

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR----KWVPDHRLIT 425
                   +G KP   T E+    YL+KG  +  ++C  +AI   R    KWVP  ++I 
Sbjct: 334 ELKEHARRRGAKPNGKTLEIFMDYYLQKGNFKSTVDCLDEAISMGRWNGEKWVPXSKIID 393

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
                 E++ D+DGAE  L  L+ +      E++ SL RTYA  G++   ++ R++ +NV
Sbjct: 394 IMMRNFEQEKDVDGAEEFLEILKKSMESPGVEVFESLTRTYAATGRISSAMLRRLKMENV 453

Query: 485 QMDAETQKVLKITSE 499
           Q+   TQK+L+  SE
Sbjct: 454 QVSEGTQKLLEAISE 468


>gi|326520694|dbj|BAJ92710.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 419

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 41  LGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           L   +  L  AKRSA   + KW  EG      EL RI R+L + +RYKHALEV EWM+  
Sbjct: 67  LRSHIFRLRLAKRSATEALEKWAGEGRAAPAPELRRIARDLSRARRYKHALEVAEWMKTH 126

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160
           ++  L   DY V +DLI+K+ G ++AE+FFE LP   +  +  +ALLHSY ++K   +AE
Sbjct: 127 HESDLSENDYGVRIDLITKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAE 186

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
            L ++M +       L YN M+ LYIS G+LDKVP + +ELK+ N SPD+ TYNL ++A 
Sbjct: 187 RLFQRMKDADLPIDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISAS 246

Query: 220 ASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            +  D E  +    E+ K   DP+    W+ Y  L S+Y+       +  +L E E +  
Sbjct: 247 VASMDLEAFKGILDEMSK---DPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKIS 303

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           ++  + Y  L+ L+  +G  D V  IWK M     +M    Y CV+S+ +  G+ + A  
Sbjct: 304 QREWITYDLLVILHAGLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAG 363

Query: 336 IYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           + D+W+ S     D    N L  A +     + A+SF   ++ K 
Sbjct: 364 VVDQWQRSKVPEFDVSACNRLFDALLAAGFTDTADSFRELMLQKS 408


>gi|326504724|dbj|BAK06653.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326523789|dbj|BAJ93065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 419

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 41  LGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           L   +  L  AKRSA   + KW  EG      EL RI R+L + +RYKHALEV EWM+  
Sbjct: 67  LRSHIFRLRLAKRSATEALEKWAGEGRAAPAPELRRIARDLSRARRYKHALEVAEWMKTH 126

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160
           ++  L   DY V +DLI+K+ G ++AE+FFE LP   +  +  +ALLHSY ++K   +AE
Sbjct: 127 HESDLSENDYGVRIDLITKVFGANAAEDFFEKLPPAAKSLEAYTALLHSYARSKMIDKAE 186

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
            L ++M +       L YN M+ LYIS G+LDKVP + +ELK+ N SPD+ TYNL ++A 
Sbjct: 187 RLFQRMKDADLPIDVLVYNEMMTLYISVGELDKVPILAEELKRQNVSPDLFTYNLRISAS 246

Query: 220 ASQNDKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            +  D E  +    E+ K   DP+    W+ Y  L S+Y+       +  +L E E +  
Sbjct: 247 VASMDLEAFKGILDEMSK---DPNSNEGWMLYRNLASIYVDASQLVSSGNSLVEAEAKIS 303

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           ++  + Y  L+ L+  +G  D V  IWK M     +M    Y CV+S+ +  G+ + A  
Sbjct: 304 QREWITYDLLVILHAGLGNLDRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAE 363

Query: 336 IYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           + D+W+ S     D    N L  A +     + A+SF   ++ K 
Sbjct: 364 VVDQWQRSKVPEFDVSACNRLFDALLAAGFTDTADSFRELMLQKS 408


>gi|449515498|ref|XP_004164786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Cucumis sativus]
          Length = 439

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 186/329 (56%), Gaps = 2/329 (0%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +L R+V++  K KRY+ ALE    ME + + ++   ++A+ L+L  K  GL  AE +F  
Sbjct: 94  KLRRVVKKFCKSKRYERALEALILMETRDNFRMYPAEHALRLELTIKAHGLLKAEEYFNQ 153

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LP       +   LLH YV+ + + +AEA M K+ + G +     YN M+ LY++  Q +
Sbjct: 154 LPTIASQKASSLPLLHGYVKERNTEKAEAFMVKLRDSGLVVNHHLYNEMMKLYVATYQNE 213

Query: 193 KVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTL 250
           KVP +++++K+N  P +V++YNLW+ AC+      + E  F E+   K +   W +  TL
Sbjct: 214 KVPLVIKDMKQNLIPRNVLSYNLWMNACSELYGVGSIELVFEEMLTDKNVQVGWSTMCTL 273

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            ++YI+  L EKA   LKE EK+     R+ Y  L++LY ++  K+ V R+W+   ++  
Sbjct: 274 ANVYIQEGLVEKAFAALKEAEKKLSPCKRLGYFFLITLYASLKDKEGVFRVWRASKAVSG 333

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
               A Y C++  LVKLGE +KAE ++ EWE      D RV N+LL AY+    LE AES
Sbjct: 334 NPTCANYICILLCLVKLGEIDKAEKVFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAES 393

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +   + +G  P Y TWE+L  G+++  Q
Sbjct: 394 LHRHTLGRGGNPNYKTWEILMEGWVRSQQ 422


>gi|18415979|ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75165070|sp|Q94B59.1|PP372_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g09450, mitochondrial; Flags: Precursor
 gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis thaliana]
 gi|27311913|gb|AAO00922.1| putative protein [Arabidopsis thaliana]
 gi|332004012|gb|AED91395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 409

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 4/307 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +D L  R+  L   KRSA   + KW  EG+ +   EL  I +ELR+ +RYKHALEV EWM
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
               + K+   DYA  +DLISK+ G+ +AE +FE L    +  +T ++LLH+Y  +K++ 
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173

Query: 158 EAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
            AEAL +++ E   L    + YN M+ LY+S GQ++KVP++++ LK K  SPD+ TYNLW
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233

Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKR 273
           L++CA+  + +   K   E++     +  W+ Y  LTS+YI       A +TL  E EK 
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             ++  + Y  L+ L+T +G K  + +IWK + +    ++   Y CV+SS + LG   +A
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353

Query: 334 ENIYDEW 340
           E I  +W
Sbjct: 354 EEIIHQW 360


>gi|449470082|ref|XP_004152747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27460-like [Cucumis sativus]
          Length = 439

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 186/329 (56%), Gaps = 2/329 (0%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +L R+V++  K KR++ ALE    ME + + ++   ++A+ L+L  K  GL  AE +F  
Sbjct: 94  KLRRVVKKFCKSKRFERALEALILMETRDNFRMYPAEHALRLELTIKAHGLLKAEEYFNQ 153

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LP       +   LLH YV+ + + +AEA M K+ + G +     YN M+ LY++  Q +
Sbjct: 154 LPTIASQKASSLPLLHGYVKERNTEKAEAFMVKLRDSGLVVNHHLYNEMMKLYVATYQNE 213

Query: 193 KVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTL 250
           KVP +++++K+N  P +V++YNLW+ AC+      + E  F E+   K +   W +  TL
Sbjct: 214 KVPLVIKDMKQNQIPRNVLSYNLWMNACSELYGVGSIELVFEEMLTDKNVQVGWSTMCTL 273

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            ++YI+  L EKA   LKE EK+     R+ Y  L++LY ++  K+ V R+W+   ++  
Sbjct: 274 ANVYIQEGLVEKAFAALKEAEKKLSPCKRLGYFFLITLYASLKDKEGVFRVWRASKAVSG 333

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
               A Y C++  LVKLGE +KAE ++ EWE      D RV N+LL AY+    LE AES
Sbjct: 334 NPTCANYICILLCLVKLGEIDKAEKVFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAES 393

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +   + +G  P Y TWE+L  G+++  Q
Sbjct: 394 LHRHTLGRGGNPNYKTWEILMEGWVRSQQ 422


>gi|21592522|gb|AAM64472.1| unknown [Arabidopsis thaliana]
          Length = 409

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 4/307 (1%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +D L  R+  L   KRSA   + KW  EG+ +   EL  I +ELR+ +RYKHALEV EWM
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
               + K+   DYA  +DLISK+ G+ +AE +FE L    +  +T ++LLH+Y  +K++ 
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLHIDSKTAETYTSLLHAYAASKQTE 173

Query: 158 EAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
            AEAL +++ E   L    + YN M+ LY+S GQ++KVP++++ LK K  SPD+ TYNLW
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233

Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKR 273
           L++CA+  + +   K   E++     +  W+ Y  LTS+YI       A +TL  E EK 
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             ++  + Y  L+ L+T +G K  + +IWK + +    ++   Y CV+SS + LG   +A
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353

Query: 334 ENIYDEW 340
           E I  +W
Sbjct: 354 EEIIHQW 360


>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 221/417 (52%), Gaps = 12/417 (2%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +D L RR+  +     S    + +W  EG  V + EL  I++ELR  KR+KHALE+ +WM
Sbjct: 28  KDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWM 87

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +    L + D A+ ++LI ++ GL   E++F+N+P +++      ALL+ Y   K   
Sbjct: 88  SDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVD 147

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           +A A M+K+ E GF   PLPYN M+NLY   G+ +++  +L+E+K +    D  TY++ +
Sbjct: 148 KANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRI 207

Query: 217 AACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK--R 273
           +A A+ +D    EK   +++    I  DW  Y    + Y K+ L +K+ + LK+ E    
Sbjct: 208 SAYAAASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLA 267

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWK--KMMSLFAKMNDAEYTCVISSLVKLGEFE 331
             +K   A++  L LY   G KDE+ RIW   K   +F K     +  +I+SL+ L + +
Sbjct: 268 NVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNK----GFISMITSLLILDDIK 323

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            AE IY EWE+   + D R+PN+L+ AY     +E AE   N +V    K    +W  L 
Sbjct: 324 GAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVESWCYLA 383

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            GYL+K Q+ + +E  K A       +   + I AA+  L+ + D++  E ++  LR
Sbjct: 384 SGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAF--LDGKQDVEETEKVVNLLR 438


>gi|414586983|tpg|DAA37554.1| TPA: hypothetical protein ZEAMMB73_139718 [Zea mays]
          Length = 423

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 194/387 (50%), Gaps = 14/387 (3%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEE 65
           L + LA    FS++AA            G    D L  R+  L  AKRSA   + KW  E
Sbjct: 21  LRSVLAGHGTFSSEAASTAVGDRVVAATGEHDGDDLRSRIFRLGLAKRSATAALEKWSSE 80

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G      EL RI R+L +++RYKHALEV +WM+  ++  L   DY + +DLI+K+ G S+
Sbjct: 81  GRDAPTAELRRIARDLTRVRRYKHALEVADWMKTHHESDLSENDYGMRIDLITKVFGASA 140

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           AE+FFE LP   +  +  +ALLHSY ++K +  AE L E+M +       L YN M+ LY
Sbjct: 141 AEDFFEKLPPGAKSLEAYTALLHSYGRSKMTDRAERLFERMKDASLPMDALVYNEMMTLY 200

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK---KTKID 241
           IS G+L KV  + +ELK+ N SPD+ TYNL  +A A+  D E       E+    K+  +
Sbjct: 201 ISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAASMDLEGFRAVLDEMSRDPKSSTE 260

Query: 242 PDWISYSTLTSLYIKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             W  Y  L S+Y+     L    +  ++  E R  ++  + Y  L+ L+  +G  + + 
Sbjct: 261 GGWALYRDLASVYVDAGQLLGSVNSPPVEAGEARISQREWITYDFLVILHAGLGRPERIR 320

Query: 300 RIWKKMMS-------LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE-SISGTGDPRV 351
            IW+ M++          +M    Y CV+SS +  G  E A  + D+W+ S +   D   
Sbjct: 321 DIWRSMVATSQSQSQQQQRMTSRNYVCVVSSYLACGRLEDAGEVVDQWQRSKAPEFDVSA 380

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTK 378
            N LL A +     + A  F   ++ K
Sbjct: 381 CNRLLDALLRAGLADAAGRFRELMLQK 407


>gi|356525847|ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 395

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 194/355 (54%), Gaps = 4/355 (1%)

Query: 30  TEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
            E+   G  D L  R+  L   KRSA   ++KW  +G+ V   +L  I +ELR+ +RYKH
Sbjct: 36  VEESVEGVDDDLRSRIFRLRLPKRSATNVLQKWVLQGNPVTLSQLRDISKELRRSQRYKH 95

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           ALE+ EWM    + +L   DYA  +DL +K+ G+ +AE +FE LP   +  +T +ALLHS
Sbjct: 96  ALEISEWMVSHEEYELSDSDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHS 155

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPD 208
           Y   K + +AE L +++ +       L YN M+ LY+S GQ +KVP +++ELK+   SPD
Sbjct: 156 YAGAKLTKKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPD 215

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKM-ELPEKAATT 266
           + TYNLW++ CA+  + +   +   E+      +  WI Y  L ++YI +  L   ++ T
Sbjct: 216 IFTYNLWISYCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNT 275

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L E EKR  ++  + Y  L+ LY  +G KD++ +IW  +     KM    Y C+ISS + 
Sbjct: 276 LVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLM 335

Query: 327 LGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           LG  ++   + D+W +S +   D      ++ A+ +    E+A +    L+ K +
Sbjct: 336 LGHTKEVGEVIDQWKQSTTTDFDMLACKKIMVAFRDMGLAEIANNLNMILIEKNL 390


>gi|356554749|ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 399

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 195/348 (56%), Gaps = 4/348 (1%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G D L  R+  L   KRSA   ++KW  +G+ +   +L  I +ELR+ +RYKHALE+ EW
Sbjct: 47  GDDDLRSRIFRLRLPKRSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYKHALEISEW 106

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M    + +L   DYAV +DL++++ G+ +AE +FE LP   +  +T +ALLHSY   K +
Sbjct: 107 MVSNEEYELSDSDYAVRIDLMTQVFGIDAAERYFEGLPLATKTTETYTALLHSYAGAKLT 166

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
            +AE L +++ +       L YN M+ LY+S GQ +KVP +++ELK+   SPD+ TYNLW
Sbjct: 167 EKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLW 226

Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKM-ELPEKAATTLKEMEKR 273
           +++CA+  + +   +   E+      +  WI Y  L ++YI +  L   ++ TL E EKR
Sbjct: 227 ISSCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKR 286

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             ++  + Y  L+ LY  +G KD++ +IW  +     KM    Y C+ISS + LG  ++ 
Sbjct: 287 ITQRQWITYDFLIILYGGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISSYLMLGLTKEV 346

Query: 334 ENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
             + D+W +S +   D      +L A+ +    E+A +    L+ K +
Sbjct: 347 GEVIDQWKQSTTTDFDMLACKKILVAFRDIGLAEIANNLNVILIEKNL 394


>gi|224141193|ref|XP_002323959.1| predicted protein [Populus trichocarpa]
 gi|222866961|gb|EEF04092.1| predicted protein [Populus trichocarpa]
          Length = 355

 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 194/353 (54%), Gaps = 6/353 (1%)

Query: 33  KGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALE 92
           K     D L  R+  L   KRS    + KW  EG+TV   EL  I +ELRK +R+KHALE
Sbjct: 2   KSKENEDDLKGRIFRLRLPKRSVTNVIDKWVREGNTVSSSELRHISKELRKSQRFKHALE 61

Query: 93  VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152
           + EWM    + +L   D+A  +DL++K+ G+ +AE +F+ LP   +  +T +ALLHSY  
Sbjct: 62  ISEWMVAHEEFELSDTDHASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTALLHSYAA 121

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVT 211
            K   +AE   +++         L YN M+ LY+S GQL+KV Q+++ELK +  +PD+ T
Sbjct: 122 AKLIEKAEEFYKRIKGSNLPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKVAPDIFT 181

Query: 212 YNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYI---KMELPEKAATTL 267
           YNLW+++CA+  + +   +   E+ + + ++ DW+ Y  + ++Y+    +   E +   +
Sbjct: 182 YNLWISSCAAALNIDKVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAV 241

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            E EK+  ++  + Y  L+ LY  +G KD++ +IWK +     KM    + C++SS + L
Sbjct: 242 VEAEKKITQREWITYDFLVILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCILSSYLML 301

Query: 328 GEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           G  ++   I D+W +S +   D    N LL A       E+A +F+  L+ + 
Sbjct: 302 GHLKEVGEIVDQWKQSTTTDFDISACNRLLDAISCLGLTEIANNFHMLLIERN 354


>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Cucumis sativus]
 gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Cucumis sativus]
          Length = 406

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 192/348 (55%), Gaps = 4/348 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           + L  R+  L   KRSA   + +W  EG+ V   EL  I +ELRK++RYKHALE+ EWM 
Sbjct: 56  NDLKSRIFQLRLPKRSAIRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMV 115

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
                +L   D+A+ +DL++K+ G+ +AE +FE LP   +  +T +ALLHS+  +K + +
Sbjct: 116 SHNQSELSDSDFAIRIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDK 175

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLA 217
           AE L EKM E       LP+N M+ LY S GQ++KV  ++ +LK+    PD+ TYNLW++
Sbjct: 176 AETLYEKMKESDIPLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWIS 235

Query: 218 ACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEKRTC 275
           + A+  + +  ++   E+      + +W+ Y  L ++Y+K   L    + ++ E      
Sbjct: 236 SLAAALNIDGVKQILNEMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGIS 295

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           ++  + Y  L+ LY  +G KD++ +IW+ +     KM    Y C++S  + L + ++   
Sbjct: 296 QREWITYDLLIILYAGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGE 355

Query: 336 IYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           + D+W +S +   D    N L+ A+I     E A SF N L+ K  +P
Sbjct: 356 VIDQWKQSTTTDFDISSCNRLVNAFIEAGLHEKANSFVNVLIQKNCEP 403


>gi|413953409|gb|AFW86058.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
          Length = 626

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 215/442 (48%), Gaps = 56/442 (12%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE 168
           D A+ LDLI+K RG+++AE +F +LP+  +   T  ALL+SY +   + +AE+LMEKM E
Sbjct: 178 DQAIRLDLIAKSRGIAAAEKYFLDLPETSKTHLTYGALLNSYCKELMTEKAESLMEKMKE 237

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKET 227
             F    + +N ++ +Y    Q +KVP ++Q++K +   PDV TYN+W+ A A+  D   
Sbjct: 238 LNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPDVFTYNVWMRALAALKDIPG 297

Query: 228 AEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            E+   E+K+  ++ PDW +YS L S+Y++  + EKA   LKE+EKR    +  AY  L+
Sbjct: 298 VERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAALKELEKRNTSNDIEAYQFLI 357

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---- 342
           +LY       EV R+W+ +     +M +  Y  +I  L  L +   AE  + EWE+    
Sbjct: 358 TLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANLKDLSAAEACFKEWEARHIH 417

Query: 343 -----ISGTG-------DP---------------------------------RVPNILLA 357
                  G+G       DP                                 RV N ++ 
Sbjct: 418 PPKTNTKGSGADNTPGADPKSPSNPPNNQSGTKETGDETAEDLQPKHPKYDIRVANAMIK 477

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC----FKKAIGS 413
           AYI    L+ A +   R   +G +    TWE+    YLK G ++    C     KK   S
Sbjct: 478 AYITEGMLDKAVAMKKRAKMRGGRLNAKTWEIFMEHYLKTGDLKMAHWCADRAMKKGHSS 537

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP 472
            R WVP   +     +  EE  D+DGAE  +  L+     +   ++  L+RTYA AGK  
Sbjct: 538 GRIWVPPPAVTETLMSYFEENKDVDGAERYVGALKKVQKDLGAPVFEPLVRTYAAAGKKF 597

Query: 473 LIIVERMQKDNVQMDAETQKVL 494
             + +R++ +NV++   T ++L
Sbjct: 598 PGMRQRLKIENVEVGEGTAQLL 619


>gi|226528511|ref|NP_001143788.1| uncharacterized protein LOC100276555 [Zea mays]
 gi|195627038|gb|ACG35349.1| hypothetical protein [Zea mays]
          Length = 422

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 193/387 (49%), Gaps = 14/387 (3%)

Query: 6   LGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEE 65
           L + LA    FS++AA            G    D L  R+  L  AKRSA   + KW  E
Sbjct: 21  LRSVLAGHGPFSSEAASTAVGDRVVAATGEHDGDDLRSRIFRLGLAKRSATAALEKWSSE 80

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G      EL RI R+L +++RYKHALEV +WM+  ++  L   DY + +DLI+K+ G S+
Sbjct: 81  GRDAPAAELRRIARDLTRVRRYKHALEVADWMKTHHESDLSENDYGMRIDLITKVFGASA 140

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           AE+FFE LP   +  +  +ALLHSY ++K +  AE L E+M         L YN M+ LY
Sbjct: 141 AEDFFEKLPAGAKSLEAYTALLHSYGRSKMTDRAERLFERMKGASLPMDALVYNEMMTLY 200

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK---KTKID 241
           IS G+L KV  + +ELK+ N SPD+ TYNL  +A A+  D E       E+    K+  +
Sbjct: 201 ISVGELGKVEAVAEELKRQNVSPDLFTYNLRASAAAASMDLEGFRAVLDEMSRDLKSSTE 260

Query: 242 PDWISYSTLTSLYIKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             W  Y  L S+Y+     L    +  ++  E R  ++  + Y  L+ L+  +G  + + 
Sbjct: 261 GGWALYRDLASVYVDAGQLLGSVNSPPVEAGEARISQREWITYDFLVILHAGLGRPERIR 320

Query: 300 RIWKKMMS-------LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE-SISGTGDPRV 351
            IW+ M++          +M    Y CV+SS +  G  E A  + D+W+ S +   D   
Sbjct: 321 DIWRSMVATSQSQSQSQQRMTSRNYVCVVSSYLACGRLEDAGEVVDQWQRSKAPEFDVSA 380

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTK 378
            N LL A +     + A  F   ++ K
Sbjct: 381 CNRLLDALLRAGLADAAGRFRELMLQK 407


>gi|223949005|gb|ACN28586.1| unknown [Zea mays]
          Length = 396

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 199/367 (54%), Gaps = 7/367 (1%)

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M L+  +K +  D+A+HLDLI +I G+ +AE +F NL DK +      ALL+ Y +    
Sbjct: 1   MSLKGHVKFLPKDHAIHLDLIGQIHGVEAAETYFNNLSDKDKTEKPYGALLNCYTRELLV 60

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
            +A A    M E GF+   LPYN ++ LY   GQ ++VP ++ E+K N   PD  +Y + 
Sbjct: 61  DKALAHFRNMKELGFVFSTLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRIC 120

Query: 216 LAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
           + +  ++ D    E    E++ + +I  DW +Y+ + S YIK +L EKA + L + E + 
Sbjct: 121 INSYGTRADFFGLENTLEEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKL 180

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            +++  AY  L+SLY N+G K E  R+W   MS   +  + +Y  ++S LVKL E  +AE
Sbjct: 181 DKQDPDAYRHLISLYGNLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAE 240

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           ++  EWES   + D RVPN+LL  Y  +  L+ AE   +  + KG  P  T+W ++  GY
Sbjct: 241 DLLKEWESSQNSFDFRVPNVLLTGYRQKALLDKAEMLLDGFLKKGKTPPSTSWGIVAIGY 300

Query: 395 LKKGQMEKVLECFKKAIGSVRK----WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
            +KG + K  E  K A+ SV      W+P   ++      L ++G++   E  +  L+ A
Sbjct: 301 AEKGDVAKAYEMTKNAL-SVHAPNTGWIPRPSMLEMILKYLGDEGEVKDVEAFVSLLKAA 359

Query: 451 GHVSTEI 457
             V +++
Sbjct: 360 VPVDSDM 366


>gi|226533322|ref|NP_001142217.1| uncharacterized protein LOC100274385 [Zea mays]
 gi|194707648|gb|ACF87908.1| unknown [Zea mays]
 gi|414870857|tpg|DAA49414.1| TPA: hypothetical protein ZEAMMB73_857299 [Zea mays]
          Length = 472

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 207/403 (51%), Gaps = 6/403 (1%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM  +  + L  GD A  LDLISK+ GL  A  +F  +P ++R P    +LL  YV+ K 
Sbjct: 52  WMTDRRHLHLSVGDVAYRLDLISKVHGLEKAVEYFGMVPKQLRKPQCYGSLLKCYVEAKA 111

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNL 214
             +AE    KM E G +     Y  M+ LY+  GQL++V  M Q+++ K   PD  +   
Sbjct: 112 VDKAEEHFAKMQEMG-MTSSYAYTWMMKLYLQTGQLERVHAMFQDMEEKGVKPDTFSVEA 170

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            LAA  +  D +   K   +    +    W  +++  SL++K  +   A   L E E+R 
Sbjct: 171 MLAAYIAAEDVQGVGKVLDKANPHEKLVTWHGHASAASLFMKSGMQVGAVMALVEAERRI 230

Query: 275 CRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             K+ R+AY+ LL  YT +G   E  RIW    S     N   Y   +S+L++  + + A
Sbjct: 231 SPKSSRIAYAFLLKTYTELGMHAEAGRIWSVYKSKVPPCNTM-YMSRLSALLRTNDIDGA 289

Query: 334 ENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
           E    EWE++     D R+ N+++ AY     +E A +  +  + KG  P   TW  L  
Sbjct: 290 EATLKEWETVPLRYHDFRLINVMVDAYCREGLVEKAVALVDGAIKKGRTPYANTWYKLAG 349

Query: 393 GYLKKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           G+ K GQ+ + ++  +KA+ S    W PD   +  + N   +Q D+  AE ++ TL+   
Sbjct: 350 GFFKTGQVPEAVDMTRKALDSATPPWRPDLANVLMSLNHFVDQKDVGAAEEMVSTLQKLV 409

Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            ++ ++Y+ LL+TY +AGK P  ++ERM++D ++ D ET+++L
Sbjct: 410 PLTRDVYHCLLKTYVRAGKPPSDLLERMKEDGLEADEETERIL 452


>gi|326533934|dbj|BAJ93740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 229/435 (52%), Gaps = 9/435 (2%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
           A  + +W  E   +  ++L   VR+LR  ++++ ALE+ +WME +    L+ GD+A+ LD
Sbjct: 55  AAELDRWLCERKPLCGHQLLFYVRKLRNFRQHRRALELMDWMEAR-GANLLPGDHALRLD 113

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           LI  + GL +AE +F +LPD  +   T S+LLH Y ++K + +A  L EKM     +   
Sbjct: 114 LICTVNGLEAAEEYFLSLPDMYKSVKTYSSLLHCYAEHK-AEKALELYEKMRTMNIVPNT 172

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L Y ++++LY+  GQ +K+ Q  +E++ N    D  TY +   +    N  E+ EK FLE
Sbjct: 173 LVYKNLMSLYLKTGQPEKILQTFEEMRANGVRTDNFTYYMLTESHIMLNGLESTEK-FLE 231

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
             +  I   W  Y+ L   Y K+   +KA  TLK+ E+   R    A+ +LLSLY + G 
Sbjct: 232 DLEKSIPVHWSLYTRLADSYNKVGQFDKAGLTLKKAEEVMDRGEMFAWHNLLSLYASSGN 291

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             EV R+W  + S     ++  Y  ++S+L KL +F+  + ++ EWE    + D R+PN+
Sbjct: 292 LSEVKRVWSSLRSELKISSNRSYLVMLSALKKLDDFDCMQQVFQEWELTQESYDMRIPNV 351

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           ++ AY+ ++  + AE+     + +G     T + + T  YL+K + E  LE ++ A   V
Sbjct: 352 MIKAYLAKDMTDEAEALRQTAMAQGHSNPLTFY-IFTESYLEKSRTEAALEVWRDAGKMV 410

Query: 415 R--KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
           +   W P   L+       EE  D+DG E     L     + T+  ++L RTY  AG+  
Sbjct: 411 KTPNWAPPPELVKRFLKHFEEAKDVDGMESFCACLEKLECLDTDARDALSRTYVAAGRKN 470

Query: 473 LIIV--ERMQKDNVQ 485
           L  V   ++++D+++
Sbjct: 471 LSSVAHHQIEEDSIE 485


>gi|357442213|ref|XP_003591384.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480432|gb|AES61635.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 223/425 (52%), Gaps = 7/425 (1%)

Query: 29  ATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYK 88
           AT  +    +  L RRL  L     + + T+ ++  EG  + K EL R V+ELRK +R+ 
Sbjct: 80  ATAAELPNKKANLYRRLADLEKTGGTVSQTLNQYIIEGKALGKDELERCVQELRKYRRFH 139

Query: 89  HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLH 148
           HA E+ EWM ++  I     +YAV+LDL+SK++G+  AEN F + P   +   T  +LL+
Sbjct: 140 HAFEIMEWMMMR-QINFSWDNYAVYLDLVSKVKGVVEAENHFNSFPPPAKNKYTYGSLLN 198

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSP 207
            Y +     +A +  +KM E G+L   L + +++++Y+   Q  KVPQ++  +K +    
Sbjct: 199 CYCKELMLDKALSHFDKMDEFGYL-TSLSFTNLMSMYMRLSQPSKVPQLVNVMKERKIRM 257

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATT 266
              TY LW+ +CA+ ND    E+ + E+K+   D  DW +YS L ++YIK    EKA   
Sbjct: 258 TEFTYILWMNSCAALNDLGEVERVYEEMKREDEDKIDWKTYSNLAAIYIKAGFFEKAELM 317

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           LK++E     + R  Y  LLSLY   G   EV R+W  +  +    N + Y  ++S+L +
Sbjct: 318 LKKVEGVMKPRQRETYHFLLSLYAGTGNVKEVYRVWGTLKKITPVTNRS-YLIMLSNLRR 376

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           L + E    ++ EWES   + D R+  + + AY+++N  + A   +   +     P +  
Sbjct: 377 LNDMEGIIKLFKEWESRHVSYDSRLVGVAVQAYLSQNMDKEAVLVFEEALKSCRGPFFRI 436

Query: 387 WELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            E+     L+KGQ++  +   + A+   S  K+ P  ++++A     EE+ D+DG + L 
Sbjct: 437 REMFMASLLEKGQLDGAMSHLEAALSEASDYKYQPSPQVVSAFLKYYEEETDLDGVDELS 496

Query: 445 VTLRN 449
             LR+
Sbjct: 497 KILRS 501


>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]
          Length = 358

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 168/284 (59%), Gaps = 3/284 (1%)

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           KRSA   + KW  EG++V   EL  I +ELR+ +RYKHALE+ EWM    +  L   DYA
Sbjct: 63  KRSATNILHKWVLEGNSVTVSELRDIAKELRRSQRYKHALEISEWMITHEEHGLSDSDYA 122

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           + +DL++K+ G+ +AE +FE LP   +  +T +ALLHSY   K + +AE L +++ +   
Sbjct: 123 MRIDLMTKVFGIDAAERYFEALPVAAKTSETYTALLHSYAGAKMTEKAEELYQRIKDSNL 182

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
               L YN M+ LY+S GQ++KVP +++ELK +N SPD+ TYNLW+++CA+  + +   +
Sbjct: 183 SFDALTYNEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAATLNIDEVRR 242

Query: 231 AFLELKK-TKIDPDWISYSTLTSLYIKME-LPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              E+      +  W  Y  L ++Y+    L   ++ +L E EKR  +   + Y  L+ L
Sbjct: 243 ILDEMSHGADSNESWTRYLNLANVYVTASRLDNSSSNSLAETEKRITQSQWITYDFLIIL 302

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
           Y  +G KD++ +IW  +     KM +  Y+C+IS+ + LG  ++
Sbjct: 303 YAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLGHVKE 346


>gi|168063926|ref|XP_001783918.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664548|gb|EDQ51263.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 448

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 232/451 (51%), Gaps = 12/451 (2%)

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           ++S    +++W  EG+ + K  L  I+  LR+ +RYK A+E+ +WM  + +IK    D  
Sbjct: 2   QKSVVPLIKEWLNEGYALDKRVLVSILIRLRRRQRYKQAMEISDWMSEEKNIKWEMADNI 61

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           V +DL +K++  + AE   E+ P + +       LL +Y   + + +A+AL+EK+   G 
Sbjct: 62  VRIDLKAKMKQFAVAEQLLEDSPPEFKTELAYHTLLRNYADYQMAQKADALLEKLKGTGI 121

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEK 230
           L  P  +N M+ LY   G ++KV ++L ++K +  P DV TYN+ +   A   D E  EK
Sbjct: 122 LTLPFAFNQMMLLYKRKGMMNKVTEILADMKTHGVPKDVYTYNILMDVKARSGDIEGMEK 181

Query: 231 AFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
            F EL   + +  D  ++ TL +  +   L +KA + LKEME+    +NR AY  L+S Y
Sbjct: 182 IFEELSADENVKADAATFGTLATFCVHAGLLDKARSYLKEMEEGDVFRNRSAYDILISQY 241

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             +G ++ V R+W+K+ S    +++  Y  VI +  KLG  EKAE +Y       G    
Sbjct: 242 GAVGDQEGVERVWEKVKS-GPVVSNRSYITVIEAFGKLGMVEKAEELYGIMSKSKGLILS 300

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           R  N LL+AY  +  +E AE     +V  G K    T+  L  GYLK  Q++K L   K+
Sbjct: 301 RQFNSLLSAYARQGLMEKAEKLVEDMVKLGRKKNAVTYHHLVTGYLKTDQLDKALAVMKE 360

Query: 410 AIGSVRK-----WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLR 463
           A G  ++     WV     +  AY    E+GD+  AE     ++ A    + ++YN LL+
Sbjct: 361 AQGDSKQGRSRLWVETLISVLDAY---AERGDVISAEKQFQDIKKAYPRPNIQVYNILLK 417

Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            Y K+    L  ++RM  D +  + ET  +L
Sbjct: 418 AYIKSRVPALGFLQRMLADKLVPNEETLNLL 448


>gi|9955532|emb|CAC05471.1| putative protein [Arabidopsis thaliana]
          Length = 402

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 11/307 (3%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +D L  R+  L   KRSA   + KW  EG+ +   EL  I +ELR+ +RYKHALE     
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALE----- 108

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
               + K+   DYA  +DLISK+ G+ +AE +FE L    +  +T ++LLH+Y  +K++ 
Sbjct: 109 --HEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 166

Query: 158 EAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
            AEAL +++ E   L    + YN M+ LY+S GQ++KVP++++ LK K  SPD+ TYNLW
Sbjct: 167 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 226

Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKR 273
           L++CA+  + +   K   E++     +  W+ Y  LTS+YI       A +TL  E EK 
Sbjct: 227 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 286

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             ++  + Y  L+ L+T +G K  + +IWK + +    ++   Y CV+SS + LG   +A
Sbjct: 287 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 346

Query: 334 ENIYDEW 340
           E I  +W
Sbjct: 347 EEIIHQW 353


>gi|224121664|ref|XP_002330622.1| predicted protein [Populus trichocarpa]
 gi|222872226|gb|EEF09357.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 196/392 (50%), Gaps = 40/392 (10%)

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164
             + D AV L LI ++RGL  AEN+F  L  K++   T  A+L+  V+ K   +AEA+M+
Sbjct: 9   FTTEDAAVRLGLIHRVRGLEEAENYFNKLSVKLKTKYTYGAILNGCVREKSVQKAEAVMQ 68

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQN 223
           +M E G      PYN ++ LY   G  DK+P +++E+++N  + D  T    +AA  + +
Sbjct: 69  EMREGGMTTSSFPYNILIILYSQTGDFDKIPPLMKEMERNGIAEDKYTLRNLIAASVAAS 128

Query: 224 DKETAEKAF-LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-RTCRKNRVA 281
           D    E+   L  +  ++  DW  Y+     Y+K+   E A T L+++EK    RK +  
Sbjct: 129 DISGVERILKLMEENPELGLDWKLYAMAADAYLKIGSIETALTMLEKLEKWMAFRKKKAV 188

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           ++ LLSLY   G KDE+ RIW  +    ++  D  Y C+I SL KL + E AE I++EWE
Sbjct: 189 FNFLLSLYAKTGNKDELYRIW-NLYKPSSESMDTSYCCMIDSLTKLDDIEGAEKIFEEWE 247

Query: 342 S-ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           S  + T D RV N LL AY NR   E AE+   + V +G  P  +TW ++  GY++  Q+
Sbjct: 248 SQCTTTYDFRVLNGLLVAYCNRGLFEKAEAAIEKAV-QGRTPYASTWHVMAKGYMEHDQI 306

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 460
            K +E  K+A+   R W PD  L+                                  N+
Sbjct: 307 PKTVEMLKRAVNVGRDWKPDPILV----------------------------------NT 332

Query: 461 LLRTYAKAGKMPLIIVERMQKDNVQMDAETQK 492
            L     AGK    ++ +M+ D   +D ETQK
Sbjct: 333 CLENSMAAGKSVNDVLYQMKMDGFAVDEETQK 364


>gi|168006155|ref|XP_001755775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693094|gb|EDQ79448.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 429

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/413 (31%), Positives = 209/413 (50%), Gaps = 12/413 (2%)

Query: 91  LEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150
           +E+ +WM L+   K    D  V +DL SK++  + AE   EN P + +       LL +Y
Sbjct: 1   MEISDWMALEKGTKWELADNIVRIDLKSKMKQFTVAEQLLENSPPEFKTELAYHTLLKNY 60

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DV 209
           V ++ + +A AL+EK+   G L  P  +N M+ LY   G  +K+P++L+++K +  P DV
Sbjct: 61  VDHQMAQKAGALLEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILEDMKAHGVPKDV 120

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLK 268
            TYN+ +   +   D E  EK F ELK  + +  D  ++ TL +  +   L EKA   LK
Sbjct: 121 YTYNILMDVKSRSGDIEGMEKIFEELKADENVKADAATFGTLATACVHAGLLEKAKVYLK 180

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EME+    +NR AY  L+S Y  +G  D V R+W+K+ S    +++  Y  VI +  KLG
Sbjct: 181 EMEEGDIFRNRSAYDILISQYGAVGDVDGVERVWEKVKS-GPIVSNRSYITVIEAFGKLG 239

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
             EKAE +Y+      G    R  N LL+AY  +  ++ AE   + +   G K    T+ 
Sbjct: 240 MVEKAEELYEVMSQSKGLILSRQFNSLLSAYTRQGLMDKAEKLMDDMEKLGRKKNAITYH 299

Query: 389 LLTWGYLKKGQMEKVLECFKKAI-----GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            L  GYLK  Q++K +   K+A+     G  + W      + A  +   E+G++  AE  
Sbjct: 300 HLVTGYLKTDQLDKAVAAMKEALVDPKQGRSKPWF---ETLVAVLDAFAERGNVVNAEQQ 356

Query: 444 LVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
              ++ A   ++ ++YN LL+ Y  +    L  + RM  D +  + ET  +L+
Sbjct: 357 FQEIKKAYPRLNIQVYNILLKAYINSRVPALGFLHRMSTDKLVPNDETLSLLR 409


>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 206/394 (52%), Gaps = 12/394 (3%)

Query: 84  LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143
           ++R +    + +WM  +  I L+  D A+ ++LI K+ GL   EN+F N+   ++     
Sbjct: 93  MQRLRDLGFISQWMSDKRYIPLMPRDIALRMNLILKVHGLEQVENYFNNIHKNLKTYQVY 152

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
            ALL+ Y   K   +AEA+M+++ + GF++  L YN ++N+Y   G  +K+  ++ E++ 
Sbjct: 153 IALLNCYALEKSVDKAEAIMQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEE 212

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPE 261
           K    D  T  + L+A A+ ++    +     ++   +I  DW SY+ +   Y+K+ L +
Sbjct: 213 KGIFCDKFTLAIRLSAYAAASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVD 272

Query: 262 KAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIW---KKMMSLFAKMNDAEY 317
           K    +K++E+    + + VA+ +LL LY     +DE+ R+W   KK   ++ K     Y
Sbjct: 273 KTLVMMKKLEELIDAKGSNVAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNK----GY 328

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +ISSL+K  + + AE + +EWES   + D RVPN L+ AY  +   E AE+  N+++T
Sbjct: 329 MAMISSLLKFDDIDAAEKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILT 388

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGD 436
           KG  P   TW  L  GYL+  Q+ K +E  KKA+      W P    +      LE   D
Sbjct: 389 KGGNPLVDTWFYLANGYLEDSQIPKAVEALKKAVVVCPPNWKPSKNTLATCLEYLEGNRD 448

Query: 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           ++GA   +  L+N G  S  +   LL +Y + GK
Sbjct: 449 VEGAGEFIRFLQNEGIFSVGVCKRLL-SYIENGK 481


>gi|326507912|dbj|BAJ86699.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 493

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 215/426 (50%), Gaps = 18/426 (4%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           + A  M +W  +     + ++   VREL + K+ + ALE+ +WME +    L  G  A+ 
Sbjct: 66  TVAAEMDEWLRQRRRPSQLQVLAYVRELTRFKKNESALELLDWMESR-GANLSPGHQAMR 124

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLISK+ G+ +AE +F ++PD  +   T S LL+ Y ++  + +     EKM     + 
Sbjct: 125 LDLISKVHGIQAAEEYFWSIPDISKSVKTYSCLLNCYGKHGLAYKGLEFYEKMKAKSIVP 184

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
             L YN+++ LY   GQ +K+    +E++++  S D   Y   + +  + ND + AEK  
Sbjct: 185 DKLVYNYLMILYQKAGQPEKILSTFEEMRESGISADKFAYFTLIESYITMNDLDAAEKVL 244

Query: 233 LELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            EL+K  + P  W  Y+ + + YIK++L  KA   +K+ E+   + +  ++ +LLSL+ +
Sbjct: 245 AELQK--VAPVHWSLYTLMANNYIKLKLFGKAEVAIKKAEEGMDKADLRSWYALLSLHAH 302

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   EV R+WK + S F K  +  Y  ++ +L  + +FE  + I+ EW+S     D R+
Sbjct: 303 CGNSTEVKRVWKSLKSTFKKCLNRSYLVMLQALSMIDDFESLQQIFQEWQSSHEHYDKRI 362

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE-----LLTWGYLKKGQMEKVLEC 406
            N+++ AY+++  ++ AE+     + +G       W      +    YL K  +   LE 
Sbjct: 363 ANVVIKAYLDKGMIDEAEAIRQSTMAQG------HWHEGMVCIFAEFYLDKSDVNAALEI 416

Query: 407 FKKAIGSV--RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
            + A   V  RKWVP   L++      EE  D  GAE  L  L+    +  + + +  +T
Sbjct: 417 LRDAKNMVMARKWVPSKELVSRFLKHYEESNDASGAESFLECLKKLECLDLDAFEAAKQT 476

Query: 465 YAKAGK 470
           Y  AG+
Sbjct: 477 YVVAGR 482


>gi|449438490|ref|XP_004137021.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 334

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 165/292 (56%), Gaps = 11/292 (3%)

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
           M+KM E GF+K PL YN MLNLY   G+ +K+ ++L+E+++    PD  TYN+ + A A+
Sbjct: 1   MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 60

Query: 222 QNDKETAEKAFLELKKTKIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
            +D    EK    L K + DP    DW +Y  + + Y K  L E +   LK+ E+    K
Sbjct: 61  ASDITNMEKL---LSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDK 117

Query: 278 NR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + +AY  L++LY  +G KDEV R+W    +L  + N   Y C+ISSL+KL + + AE I
Sbjct: 118 QKWLAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSG-YLCIISSLMKLDDIDGAERI 176

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             EWES   + D R+PN+++ +Y  +  ++ AE++ NRL+  G +P   TW+LL  GY  
Sbjct: 177 LKEWESGDTSFDFRIPNMMINSYCTKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHS 236

Query: 397 KGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
            G   KV E  KKAI  S   W P + ++ A    L+   ++D AE ++  L
Sbjct: 237 NGLTNKVAETLKKAISVSPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLL 288


>gi|297803972|ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315706|gb|EFH46129.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 480

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 204/390 (52%), Gaps = 7/390 (1%)

Query: 30  TEKKGAG---GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKR 86
           T  +G G   GR  L +R+  L   K S    + +W+ EG+   K EL  +++EL K KR
Sbjct: 24  TLSRGYGSSMGRFGLYKRISPLGDPKISIVPVLDEWRGEGNYTSKEELRGMIKELIKYKR 83

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           + HALEV  WM  +    L   D+   ++LIS++ GL  AE FFEN+P  M+G    S+L
Sbjct: 84  FVHALEVSRWMSDRMFFPLSLTDFGTRINLISRVCGLGEAEVFFENIPKDMKGIAVFSSL 143

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-T 205
           L  Y + K + +A  L+E M E G       YN M+N+Y       K+  ++ E+++N  
Sbjct: 144 LSCYAREKSAEKAAKLVEAMKEAGVSMDTRCYNLMMNMYYQMNVHGKLDDLMLEMEQNGV 203

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAA 264
           S D  T ++ L+A A+ ++ E  EK   ++   ++   DW  YS   + ++K+EL ++A 
Sbjct: 204 SFDQFTLSIRLSAYAAASNIEGIEKTIEKISSMSETAIDWTIYSAAANAFLKVELIDEAT 263

Query: 265 TTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
             LK+ E+     +   A+ +LL LY   G K+++ R+W +      K+ ++ Y  +ISS
Sbjct: 264 MMLKKCEEFVNEDSGNEAFHTLLKLYGETGRKEDLSRVWLRFKEE-RKVFNSGYKIMISS 322

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
            +K G+ E  E ++++WES   + D R+PN+L+  Y  ++  E AE    +     + P 
Sbjct: 323 ALKFGDIELVEKVFNQWESEKLSYDFRIPNLLINFYCEKDLTEKAELLLKKAEGNRVSPP 382

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
              +  L   YL+  ++ K  E  ++A+ +
Sbjct: 383 MDAYICLANIYLEGDEISKATEAIERAVST 412


>gi|115482780|ref|NP_001064983.1| Os10g0501000 [Oryza sativa Japonica Group]
 gi|113639592|dbj|BAF26897.1| Os10g0501000, partial [Oryza sativa Japonica Group]
          Length = 451

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 218/460 (47%), Gaps = 71/460 (15%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKW--KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           D+L RR+ +    +   +  + +W   EE H V K E+  I++ L + +R+  AL++  W
Sbjct: 54  DSLFRRVAAAADPRLPLSPVLEQWCLAEERH-VAKPEVQSIIKYLCRRRRFSQALQLSMW 112

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +  + L  GD A  L+LI+K+ GL  A  +F+++PD+++      +LL  Y +    
Sbjct: 113 MTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCV 172

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
            +AE L EKM   G +     YN M+ LY+ NGQ+++V  M Q ++++   PDV T +  
Sbjct: 173 EKAEELFEKMRGMG-MASSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTL 231

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +A                 L+K K         TL + Y+        A  +K +E    
Sbjct: 232 VAV----------------LRKKK---------TLVAAYV-------VAEDIKAIENVLE 259

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           + N     S  S+Y                             C I  L+K+ +   AE 
Sbjct: 260 KAN-----SCNSMY----------------------------MCRIGVLLKMNDMVGAEK 286

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
            Y+EWES     D R+ N+L+ AY     ++ AE+  ++ + KG  P   T   L  GY 
Sbjct: 287 AYEEWESKHVYHDSRLINLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYF 346

Query: 396 KKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           K GQ+ K  +  KKA+ S   +W+PD   +  + N   EQ +++ AE ++  L+     +
Sbjct: 347 KVGQVSKAADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQRLVTPT 406

Query: 455 TEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            +IY+ LL+TY  AGK    ++ RM+KD ++ D ET+K+L
Sbjct: 407 RDIYHGLLKTYVNAGKPVSDLLHRMKKDGMEADEETEKIL 446


>gi|226530081|ref|NP_001147602.1| DNA-binding protein [Zea mays]
 gi|195612448|gb|ACG28054.1| DNA-binding protein [Zea mays]
          Length = 622

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW ++G+   + EL  ++  LRK   Y  ALE+ EW++     + V  DYA HLDL 
Sbjct: 172 ALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWVQKSQLFEFVERDYAAHLDLT 231

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+ GL  AE   E +P   RG      LL + V      ++E +  +M + GF      
Sbjct: 232 AKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDLGFPVTQFS 291

Query: 178 YNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           +N +L LY  +   ++  V  M++  K++  P + TY + + A  S  D E  EK    +
Sbjct: 292 FNQLLLLYKRLDRKKIADVLAMME--KEDVKPSLFTYKILVDAKGSVGDIEAMEKVIESM 349

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           +K  I+PD    +T+   YI     EKA   LK ME    +KNR A  +LL L+  +G  
Sbjct: 350 EKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPLHAFLGNS 409

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTGDPRV 351
           D V RIWK           AE    I +  KLG+ EKAE ++++    W+++S     + 
Sbjct: 410 DAVERIWKACED---NTRVAESVSAIEAFGKLGDVEKAEKVFEDMLVHWKTLSS----KF 462

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N LL  Y + N L+  +    R+    ++    T + L   Y++ G++EK      K  
Sbjct: 463 YNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGEVEKAESLVHKL- 521

Query: 412 GSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAG 469
            S++  + P +       +   ++GD+  +E +   LR +G+     +Y SLL  Y  A 
Sbjct: 522 -SIQNHIKPIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGYTGRIRMYQSLLHAYVHAK 580

Query: 470 KMPLIIVERMQKDNV 484
                  ERM+ DN+
Sbjct: 581 APAYGFRERMKADNI 595


>gi|297842839|ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335142|gb|EFH65560.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 597

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 208/436 (47%), Gaps = 13/436 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW EEG+ + + E+ + + +LR+ + Y  AL++ EW+E    I++   DY+  
Sbjct: 144 SIGSALDKWVEEGNEITRVEVAKAMLQLRRRRMYGRALQLSEWLEANKKIEMNERDYSSR 203

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDL  KIRGL + E + + +P   +G      LL + V      ++E +  +M + GF  
Sbjct: 204 LDLTVKIRGLENGEAYMQKIPKSFKGEVIYRTLLANCVAAGNVKKSELVFNRMKDLGFPL 263

Query: 174 CPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                + ML LY  I   ++  V  +++  K+N  P ++TY + +    + ND    E+ 
Sbjct: 264 SGFTCDQMLLLYKRIDRKKIADVLLLME--KENVKPSLLTYKILIDVKGATNDISGMEQI 321

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K   + PD+ + +     Y    L EKA   LKEME  +   NR A+  LLS+Y +
Sbjct: 322 LETMKDEGVQPDFQTQALTAKHYSGAGLKEKAEKVLKEMEGESLEANRRAFKDLLSIYAS 381

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G +DEV RIWK   S   K    E    I +  KL + ++AE I+++  ++        
Sbjct: 382 LGREDEVTRIWKICES---KPYFDESLAAIHAFGKLNKVQEAEAIFEKIVTMGRRASSNT 438

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            ++LL  Y++   L   +    R+   G +   TTW+ L   Y++ G++EK      KA 
Sbjct: 439 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSMLDKAS 498

Query: 412 --GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKA 468
                +  +     I   Y+K   +GD+   E + + +R  G+ S    + +LL+ Y  A
Sbjct: 499 KQSHTKLMMNSFMYIMDEYSK---RGDVHNTEKIFLKMREVGYTSRLRQFQALLQAYINA 555

Query: 469 GKMPLIIVERMQKDNV 484
                 + +RM+ DN+
Sbjct: 556 KAPAYGMRDRMKADNI 571


>gi|413946863|gb|AFW79512.1| DNA-binding protein [Zea mays]
          Length = 622

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW ++G+   + EL  ++  LRK   Y  ALE+ EW++     + V  DYA HLDL 
Sbjct: 172 ALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWVQKSQLFEFVERDYAAHLDLT 231

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+ GL  AE   E +P   RG      LL + V      ++E +  +M + GF      
Sbjct: 232 AKVYGLHKAEQTIEKIPASCRGEIVYRTLLANCVSASNIKKSEQVFNRMKDLGFPVTQFS 291

Query: 178 YNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           +N +L LY  +   ++  V  M++  K++  P + TY + + A  S  D E  EK    +
Sbjct: 292 FNQLLLLYKRLDRKKIADVLAMME--KEDVKPSLFTYKILVDAKGSVGDIEAMEKVIESM 349

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           +K  I+PD    +T+   YI     EKA   LK ME    +KNR A  +LL L+  +G  
Sbjct: 350 EKDSIEPDLTFNATIARHYIFYGQREKAEALLKAMEGDDIQKNRAACKTLLPLHAFLGNS 409

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTGDPRV 351
           D V RIWK           AE    I +  KLG+ EKAE ++++    W+++S     + 
Sbjct: 410 DAVERIWKACED---NTRVAESVSAIEAFGKLGDVEKAEKVFEDMLVHWKTLSS----KF 462

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N LL  Y + N L+  +    R+    ++    T + L   Y++ G++EK      K  
Sbjct: 463 YNALLKVYADHNLLDKGKELAKRMDENRVRFGAPTLDALVKLYVEAGEVEKAESLVHKL- 521

Query: 412 GSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAG 469
            S++  + P +       +   ++GD+  +E +   LR +G+     +Y  LL  Y +A 
Sbjct: 522 -SIQNHIKPIYNTYMTLLDSYSKKGDVRNSEKVFNKLRQSGYTGRIRMYQVLLHAYVRAK 580

Query: 470 KMPLIIVERMQKDNV 484
                  ERM+ DN+
Sbjct: 581 APAYGFRERMKADNI 595


>gi|125532538|gb|EAY79103.1| hypothetical protein OsI_34209 [Oryza sativa Indica Group]
          Length = 479

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 216/459 (47%), Gaps = 69/459 (15%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKW-KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           D+L RR+ +    +   +  + +W   E   + K E+  I++ L + +R+  AL++  WM
Sbjct: 82  DSLFRRVAAAADPRLPLSPVLEQWCLAEERPIAKPEIQSIIKYLCRRRRFSQALQLSMWM 141

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +  + L  GD A  L+LI+K+ GL  A  +F+++PD+++      +LL  Y +     
Sbjct: 142 TERLHLHLSPGDVANRLELITKVHGLDRAVEYFDSMPDQLKQQQCYGSLLKCYAEANCVE 201

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +AE L EKM   G +     YN M+ LY+ NGQ+++V  M Q ++++   PDV T +  +
Sbjct: 202 KAEELFEKMRGMG-MASSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLV 260

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
           A                 L+K K         TL + Y+        A  +K +E    +
Sbjct: 261 AV----------------LRKKK---------TLVAAYV-------VAEDIKAIENVLEK 288

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N     S  S+Y                             C I  L+K+ +   AE  
Sbjct: 289 AN-----SCNSMY----------------------------MCRIGVLLKMNDMVGAEKA 315

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           Y+EWES     D R+ N+L+ AY     ++ AE+  ++ + KG  P   T   L  GY K
Sbjct: 316 YEEWESKHVYHDSRLINLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFK 375

Query: 397 KGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
            GQ+ K  +  KKA+ S   +W+PD   +  + N   EQ +++ AE +   L+     + 
Sbjct: 376 VGQVSKAADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMASLLQRLITPTR 435

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           +IY+ LL+TY  AGK    +++RM+KD ++ D ET+K+L
Sbjct: 436 DIYHGLLKTYVNAGKPVSDLLDRMKKDGMEADEETEKIL 474


>gi|297851240|ref|XP_002893501.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339343|gb|EFH69760.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 667

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 152/506 (30%), Positives = 236/506 (46%), Gaps = 50/506 (9%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           TL  R+   ++        + +W+++G+ V+   +  I+++LR   +   AL+V EWM  
Sbjct: 29  TLNHRITDALHRNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSK 88

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-AE 158
           +    L+  D+A  L LI  + GL  AE FFE++P   R     + LL+ Y ++ K+  +
Sbjct: 89  EKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARDDSVYTTLLNWYARSDKTLCK 148

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYN---- 213
           AEA  +KM E G L  P PYN M++LYI+    +KV ++L+E+K N    D +T N    
Sbjct: 149 AEATFQKMRELGLLSRPSPYNAMMSLYIALNDREKVEELLREMKDNDVEADSITVNNVLK 208

Query: 214 LWLAACASQNDKETAEKAFLELKK--TKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           L+ A C       TA + FL   +    I  +W++   +   Y++     KA   L+  E
Sbjct: 209 LYSAVCDV-----TAMEKFLNKWEGINGIKLEWLTTLDMAKAYLRARSNGKAIKMLRLTE 263

Query: 272 KRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           +   RK+ + AY  L+ LY   G ++EVLRIW        + ++  Y  VI SL+K+ + 
Sbjct: 264 ELADRKSLKSAYDHLMKLYGEAGNREEVLRIWNLYKMNIGQRDNKGYRTVIRSLLKVDDI 323

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
             AE IY  WES+S   D R+P +L + Y  R   E AE   N    K  K       LL
Sbjct: 324 FGAEEIYKVWESLSLEFDIRIPTMLASGYRERGMTEKAEKLINSKTIKDRKMNKPVTPLL 383

Query: 391 -TWGYLKKGQMEKVL-------ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
             WG   K    K L         F KA+  V +W+ + R +   Y++       D A  
Sbjct: 384 EQWGDQMKPSDLKCLIKNLRDSNQFSKAL-QVSEWMGEKR-VCDLYSE-------DYAAR 434

Query: 443 LLVTLRNAGHVSTE--------------IYNSLLRTYAKAGK----MPLIIVERMQKDNV 484
           L +T    G    E              +Y +LL +YAK+ K    M   I+  M+++NV
Sbjct: 435 LYLTENVLGLEKAEKYFENIPENMKDYSVYVALLSSYAKSDKNLENMVEEILREMEENNV 494

Query: 485 QMDAET-QKVLKITSEMPVSEVSSIF 509
             D+ T   VLK+ +     E   +F
Sbjct: 495 DPDSITVNYVLKVYAAASKVEAMEMF 520



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 37/162 (22%)

Query: 203 KNTSPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +N   ++  Y++++A  +S     +N +   E+   E+++  +DPD I+ + +  +Y   
Sbjct: 452 ENIPENMKDYSVYVALLSSYAKSDKNLENMVEEILREMEENNVDPDSITVNYVLKVY--- 508

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM-GYKDEVLRIWK------------- 303
                AA+ ++ ME              + +Y N+ G K EV  +W+             
Sbjct: 509 ----AAASKVEAME-------MFMRHWAVEMYGNVAGCKREVHNLWEECKNKKEEKVGDG 557

Query: 304 ----KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
                ++S   KM+D  Y  VISSL+KL + + AE +Y EW+
Sbjct: 558 KECLNVVSTLLKMDDDGYRTVISSLLKLDDVQGAEKVYGEWK 599


>gi|298572008|gb|ADI88001.1| PPR protein [Silene latifolia]
 gi|298572012|gb|ADI88003.1| PPR protein [Silene latifolia]
 gi|298572028|gb|ADI88011.1| PPR protein [Silene latifolia]
 gi|298572052|gb|ADI88023.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572004|gb|ADI87999.1| PPR protein [Silene latifolia]
 gi|298572006|gb|ADI88000.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|357509403|ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500005|gb|AES81208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 209/438 (47%), Gaps = 26/438 (5%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW E+G  + + E++  +  LR+ K Y  AL++ EW+E +  ++ V  DYA  LDLI
Sbjct: 175 ALEKWVEDGKELSREEISLTMINLRRRKIYLKALQLSEWLESKKHLEFVERDYASQLDLI 234

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+ GL  AE + E +P+  RG      LL + V      +AE +  KM +  F   P  
Sbjct: 235 AKLHGLHKAEVYIEKIPESFRGEIIYRTLLANCVTQNNLKKAEEIFNKMKDLEFPLTPFA 294

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            N +L LY    +      +L   ++N  P  +T+ + +      ND +  ++   +++ 
Sbjct: 295 CNQLLLLYKRTDKKKIADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDGMDQIVDQMRA 354

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I+PD  + + L   YI     +KA   LKEME    ++NR     LL+LY  +G  DE
Sbjct: 355 EGIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGENLKENRWVCRLLLALYAKLGMADE 414

Query: 298 VLRIWKKMMSLFAKMNDAEYTCV--ISSLVKLGEFEKAENIYD----EWESISGTGDPRV 351
           V R+WK       +   +   CV  I +  KL + ++AE +++    +W+  S     + 
Sbjct: 415 VGRVWK-----VCETRPSVEDCVAAIEAWGKLKKIDEAEAVFEVMARKWKLTS-----KN 464

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            ++LL  Y N   L   +    R+  KG +    TW  L   Y++ G++EK     +KAI
Sbjct: 465 CSVLLNVYANNKMLTKGKDLIKRMAHKGCRIGPLTWNALVKLYVQAGEVEKADSVLQKAI 524

Query: 412 GSVRKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYA 466
                     R I ++YN L E+    GDI  +E +   ++ AG++S  + Y  L+  Y 
Sbjct: 525 QQ-----SPVRPIFSSYNTLLEEYSKRGDIHNSEKIFYRMKQAGYISRLKQYQILIEAYR 579

Query: 467 KAGKMPLIIVERMQKDNV 484
           +A      I +R++ DNV
Sbjct: 580 RANVPAYGIRDRLKADNV 597


>gi|298572060|gb|ADI88027.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGKLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K G++EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGKLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|297739953|emb|CBI30135.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 199/430 (46%), Gaps = 9/430 (2%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW +EG  + + E+ + +  LRK++ +  AL+  EWME    + +V  DYA  +DLI
Sbjct: 175 VLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVERDYASRVDLI 234

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+RGL  AE++ E +P   RG      LL + V    + +AE +  KM + GF      
Sbjct: 235 AKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGFPITTFA 294

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            N +L LY    +      +L   K++  P + TY L +      ND    E+    +K 
Sbjct: 295 CNQLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQIVETMKA 354

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I+P+    S L   Y+   L EKA   LKEME    ++NR     LL  Y  +G  D+
Sbjct: 355 EGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLPPYAALGKADD 414

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V RIWK   S        E+   I +  KL + E+AE I+++          +  + LL 
Sbjct: 415 VERIWKVCES---NPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHYSALLK 471

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVR 415
            Y +   L   +    ++   G +    TW+ L   Y++ G++EK  +  +KA+    ++
Sbjct: 472 VYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQQSPIK 531

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI 474
                +  I   Y K   +GDI  +E +   +R +G+VS    +  L++ Y  A      
Sbjct: 532 PMFSTYMAIMDQYAK---RGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKAPAYG 588

Query: 475 IVERMQKDNV 484
           I ERM+ DN+
Sbjct: 589 IKERMKADNI 598


>gi|298571984|gb|ADI87989.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV  ++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEDLVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E++
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEDL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|225441211|ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Vitis vinifera]
          Length = 587

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 199/430 (46%), Gaps = 9/430 (2%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW +EG  + + E+ + +  LRK++ +  AL+  EWME    + +V  DYA  +DLI
Sbjct: 138 VLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVERDYASRVDLI 197

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+RGL  AE++ E +P   RG      LL + V    + +AE +  KM + GF      
Sbjct: 198 AKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMKDLGFPITTFA 257

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            N +L LY    +      +L   K++  P + TY L +      ND    E+    +K 
Sbjct: 258 CNQLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITGMEQIVETMKA 317

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I+P+    S L   Y+   L EKA   LKEME    ++NR     LL  Y  +G  D+
Sbjct: 318 EGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLPPYAALGKADD 377

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V RIWK   S        E+   I +  KL + E+AE I+++          +  + LL 
Sbjct: 378 VERIWKVCES---NPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSKHYSALLK 434

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVR 415
            Y +   L   +    ++   G +    TW+ L   Y++ G++EK  +  +KA+    ++
Sbjct: 435 VYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKAMQQSPIK 494

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI 474
                +  I   Y K   +GDI  +E +   +R +G+VS    +  L++ Y  A      
Sbjct: 495 PMFSTYMAIMDQYAK---RGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKAPAYG 551

Query: 475 IVERMQKDNV 484
           I ERM+ DN+
Sbjct: 552 IKERMKADNI 561


>gi|193806501|sp|Q9C7F1.2|PPR61_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g28020
          Length = 566

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 233/476 (48%), Gaps = 40/476 (8%)

Query: 53  RSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
           R+A I   + +W+++G+ V+   +  I+++LR   +   AL+V EWM  +    L+  D+
Sbjct: 48  RNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDF 107

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSEC 169
           A  L LI  + GL  AE FFE++P   RG    ++LL+SY ++ K+  +AEA  +KM + 
Sbjct: 108 AARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDL 167

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETA 228
           G L  P+PYN M++LY +    +KV ++L E+K N    D VT N  L   ++  D    
Sbjct: 168 GLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEM 227

Query: 229 EKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLL 286
           EK   + +    I  +W +   +   Y++     KA   L+  E+   +K+ + AY  L+
Sbjct: 228 EKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLM 287

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            LY   G ++EVLR+WK   S   + ++  Y  VI SL+K+ +   AE IY  WES+   
Sbjct: 288 KLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLE 347

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYN------RLVTKGIKPCYTTWELLTWGYLKKGQM 400
            D R+P +L + Y +R   E AE   N      R + K + P      L  WG   K   
Sbjct: 348 FDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPL-----LEQWGDQMKPSD 402

Query: 401 EKVL-------ECFKKAIGSVRKWVPDHRLIT------AAYNKLEEQGDIDGAEHLLVTL 447
            K L       + F KA+  V +W+ + ++        AA   L E  ++ G E      
Sbjct: 403 LKCLIKNLRDSKQFSKAL-QVSEWMGEKQVCNLYLEDYAARLYLTE--NVLGLEEAEKYF 459

Query: 448 RNAGHVSTE--IYNSLLRTYAKA----GKMPLIIVERMQKDNVQMDAET-QKVLKI 496
            N      +  +Y +LL +YAK+    G M   I+  M+++NV  D  T   VLK+
Sbjct: 460 ENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKV 515


>gi|298572040|gb|ADI88017.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFT 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 10/195 (5%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI----DGAEHLLVTLRN 449
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++    +  + +   + N
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEVYRVWNIYKSVFTNIPN 184

Query: 450 AGHVSTEIYNSLLRT 464
            G+ S  + +SL+R+
Sbjct: 185 WGYHS--VISSLVRS 197


>gi|298571988|gb|ADI87991.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K    EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KSGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|413950397|gb|AFW83046.1| hypothetical protein ZEAMMB73_939845 [Zea mays]
          Length = 453

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 176/363 (48%), Gaps = 45/363 (12%)

Query: 85  KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS 144
           +RY+ ALE+  WME    ++L S D+A  LDLI+K    S AE ++    +K++ P T  
Sbjct: 122 RRYEQALEIFSWMESCSSLRLSSWDHAARLDLIAKAYSTSQAEEYY----NKLQSPATRQ 177

Query: 145 A----LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           A    LLH YV  +   +  ++++ M                                  
Sbjct: 178 AASFPLLHCYVMERDHEKVLSVIDLMK--------------------------------- 204

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAF-LELKKTKIDPDWISYSTLTSLYIKMEL 259
            + N   +V++YNLW+ ACA  +  ++ +  F + L    +   W +Y TL +++ K  L
Sbjct: 205 -RNNIHRNVLSYNLWMNACAEVSGVDSVQSVFQVMLNDETVKVGWSTYCTLANIFRKNGL 263

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A   L + E +     R+ YS +++ Y  +   D V+R+W+   S+  ++  A Y  
Sbjct: 264 NTEAQACLVKAEAKLSPTGRLGYSFVMTCYAALNDSDGVMRMWEASKSVPGRILTAYYMA 323

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
            +S  +K+G+  +AE I+ +WE+     D RV N+LL AY+    +E AE  +  ++ KG
Sbjct: 324 AMSCSIKVGDISQAECIFGKWEAGCRKHDVRVSNVLLGAYVRNRWIEKAERLHLHMLEKG 383

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDI 437
             P Y TWE+L  GY++  QM+K + C KK +  ++   W P   L+ A     EEQG  
Sbjct: 384 ACPNYKTWEILMEGYVQSRQMDKAVGCMKKGLSLLKSCHWRPPVELMEAIGKHFEEQGSA 443

Query: 438 DGA 440
           D A
Sbjct: 444 DDA 446


>gi|298572024|gb|ADI88009.1| PPR protein [Silene latifolia]
 gi|298572032|gb|ADI88013.1| PPR protein [Silene latifolia]
 gi|298572044|gb|ADI88019.1| PPR protein [Silene latifolia]
 gi|298572056|gb|ADI88025.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298571978|gb|ADI87986.1| PPR protein [Silene latifolia]
 gi|298571980|gb|ADI87987.1| PPR protein [Silene latifolia]
 gi|298571982|gb|ADI87988.1| PPR protein [Silene latifolia]
 gi|298571990|gb|ADI87992.1| PPR protein [Silene latifolia]
 gi|298571994|gb|ADI87994.1| PPR protein [Silene latifolia]
 gi|298571996|gb|ADI87995.1| PPR protein [Silene latifolia]
 gi|298571998|gb|ADI87996.1| PPR protein [Silene latifolia]
 gi|298572002|gb|ADI87998.1| PPR protein [Silene latifolia]
 gi|298572020|gb|ADI88007.1| PPR protein [Silene latifolia]
 gi|298572022|gb|ADI88008.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572010|gb|ADI88002.1| PPR protein [Silene latifolia]
 gi|298572034|gb|ADI88014.1| PPR protein [Silene latifolia]
 gi|298572054|gb|ADI88024.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|15217811|ref|NP_174123.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|12322989|gb|AAG51479.1|AC069471_10 hypothetical protein [Arabidopsis thaliana]
 gi|332192782|gb|AEE30903.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 233/476 (48%), Gaps = 40/476 (8%)

Query: 53  RSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
           R+A I   + +W+++G+ V+   +  I+++LR   +   AL+V EWM  +    L+  D+
Sbjct: 48  RNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDF 107

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSEC 169
           A  L LI  + GL  AE FFE++P   RG    ++LL+SY ++ K+  +AEA  +KM + 
Sbjct: 108 AARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDL 167

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETA 228
           G L  P+PYN M++LY +    +KV ++L E+K N    D VT N  L   ++  D    
Sbjct: 168 GLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEM 227

Query: 229 EKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLL 286
           EK   + +    I  +W +   +   Y++     KA   L+  E+   +K+ + AY  L+
Sbjct: 228 EKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLM 287

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            LY   G ++EVLR+WK   S   + ++  Y  VI SL+K+ +   AE IY  WES+   
Sbjct: 288 KLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLE 347

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYN------RLVTKGIKPCYTTWELLTWGYLKKGQM 400
            D R+P +L + Y +R   E AE   N      R + K + P      L  WG   K   
Sbjct: 348 FDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPL-----LEQWGDQMKPSD 402

Query: 401 EKVL-------ECFKKAIGSVRKWVPDHRLIT------AAYNKLEEQGDIDGAEHLLVTL 447
            K L       + F KA+  V +W+ + ++        AA   L E  ++ G E      
Sbjct: 403 LKCLIKNLRDSKQFSKAL-QVSEWMGEKQVCNLYLEDYAARLYLTE--NVLGLEEAEKYF 459

Query: 448 RNAGHVSTE--IYNSLLRTYAKA----GKMPLIIVERMQKDNVQMDAET-QKVLKI 496
            N      +  +Y +LL +YAK+    G M   I+  M+++NV  D  T   VLK+
Sbjct: 460 ENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKV 515



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 45/242 (18%)

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
             E   D+M+ P     L+ +   +K+ ++A  + E M E       L  ++   LY++ 
Sbjct: 390 LLEQWGDQMK-PSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLE-DYAARLYLTE 447

Query: 189 GQLDKVPQMLQELKK---NTSPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKI 240
             L      L+E +K   N   ++  Y++++A  +S     +N     ++   E+++  +
Sbjct: 448 NVLG-----LEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNV 502

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
           DPD I+ + +  +Y        A + ++ ME    R     Y  +         K EV  
Sbjct: 503 DPDLITVNHVLKVY-------AAESKIQAMEMFMRRWAVEVYGDVARC------KREVHN 549

Query: 301 IWKK-----------------MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +W +                 +++   KM+D  Y  VISSL+KL + +  E +Y EW+  
Sbjct: 550 LWDECKNNKEEEVEDGKKRLPVVTTLLKMDDDGYRTVISSLLKLDDVQGVEKVYGEWKPK 609

Query: 344 SG 345
           +G
Sbjct: 610 AG 611


>gi|298572058|gb|ADI88026.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572042|gb|ADI88018.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGELEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFT 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 91/195 (46%), Gaps = 10/195 (5%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI----DGAEHLLVTLRN 449
           K G++EK  +C +     +  R  +P H L++  Y  L  +G++    +  + +   + N
Sbjct: 126 KLGELEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEVYRVWNIYKSVFTNIPN 184

Query: 450 AGHVSTEIYNSLLRT 464
            G+ S  + +SL+R+
Sbjct: 185 WGYHS--VISSLVRS 197


>gi|298571986|gb|ADI87990.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572014|gb|ADI88004.1| PPR protein [Silene latifolia]
 gi|298572038|gb|ADI88016.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572026|gb|ADI88010.1| PPR protein [Silene latifolia]
 gi|298572046|gb|ADI88020.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGELEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K G++EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGELEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572030|gb|ADI88012.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 138/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           +V +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  EVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGELEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           K+ +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 KIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E ++ E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAEMLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K G++EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGELEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572066|gb|ADI88030.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   +KA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLDKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ++K  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLDKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572036|gb|ADI88015.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K    EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KSGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298571976|gb|ADI87985.1| PPR protein [Silene latifolia]
 gi|298571992|gb|ADI87993.1| PPR protein [Silene latifolia]
 gi|298572000|gb|ADI87997.1| PPR protein [Silene latifolia]
 gi|298572064|gb|ADI88029.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K    EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KSGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572050|gb|ADI88022.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 137/224 (61%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           +V +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  EVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E ++ E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFREMDLDPRIIPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|15220095|ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42572199|ref|NP_974190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|145327755|ref|NP_001077853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75262222|sp|Q9C977.1|PP135_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80270, mitochondrial; Flags: Precursor
 gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical protein; 8785-10851 [Arabidopsis thaliana]
 gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis thaliana]
 gi|20259918|gb|AAM13306.1| unknown protein [Arabidopsis thaliana]
 gi|332198258|gb|AEE36379.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332198259|gb|AEE36380.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332198260|gb|AEE36381.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 206/436 (47%), Gaps = 13/436 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW EEG+ + + E+ + + +LR+ + Y  AL++ EW+E    I++   DYA  
Sbjct: 143 SIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASR 202

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDL  KIRGL   E   + +P   +G      LL + V      ++E +  KM + GF  
Sbjct: 203 LDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPL 262

Query: 174 CPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                + ML L+  I   ++  V  +++  K+N  P ++TY + +    + ND    E+ 
Sbjct: 263 SGFTCDQMLLLHKRIDRKKIADVLLLME--KENIKPSLLTYKILIDVKGATNDISGMEQI 320

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K   ++ D+ + +     Y    L +KA   LKEME  +   NR A+  LLS+Y +
Sbjct: 321 LETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYAS 380

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +G +DEV RIWK   S   K    E    I +  KL + ++AE I+++   +        
Sbjct: 381 LGREDEVKRIWKICES---KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSST 437

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            ++LL  Y++   L   +    R+   G +   TTW+ L   Y++ G++EK      KA 
Sbjct: 438 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKAS 497

Query: 412 --GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKA 468
                +  +     I   Y+K   +GD+   E + + +R AG+ S    + +L++ Y  A
Sbjct: 498 KQSHTKLMMNSFMYIMDEYSK---RGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINA 554

Query: 469 GKMPLIIVERMQKDNV 484
                 + +R++ DN+
Sbjct: 555 KSPAYGMRDRLKADNI 570


>gi|298572062|gb|ADI88028.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  S    E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  +    E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|297844450|ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335948|gb|EFH66365.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 594

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 204/436 (46%), Gaps = 13/436 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW E+G    + E    + +LRK + Y  AL++ EW++     ++   DYA  
Sbjct: 141 SVGSALDKWVEQGKDTSRTEFASAMLQLRKRRMYGRALQMTEWLDDNKQFEMKERDYASR 200

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLISK+RGL   E + E +P+  RG      LL +YV       AEA+  KM + GF  
Sbjct: 201 LDLISKVRGLYKGEAYIETIPESFRGELVYRTLLSNYVATSNVRTAEAVFNKMKDLGFPL 260

Query: 174 CPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                N ML LY  +   ++  V  +++  K+N  P++ TY + +      ND    E+ 
Sbjct: 261 STFTCNQMLILYKRVDKKKIADVLLLME--KENLKPNLNTYKILIDTKGLSNDITGMEQI 318

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K   ++PD  + + +   Y    L EKA   LKEME  +  +NR  Y  LLS+Y  
Sbjct: 319 VETMKSEGVEPDLRARALIARNYASAGLKEKAEKVLKEMEGESLEENRHVYKDLLSVYGF 378

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +   DEV RIW K+     + N  E    I +  K+ + ++AE ++++   +S      V
Sbjct: 379 LQRADEVTRIW-KICEEKPRYN--ESLAAILAFGKIDKVKEAEAVFEKMLKMSHRVSSNV 435

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            ++LL  Y++   +   +    +++  G      T + +   YL+ G++EK      KAI
Sbjct: 436 YSVLLRVYVDHKMVSEGKDLVKQMLDSGCNIGALTLDAVIKLYLEAGEVEKAESSLSKAI 495

Query: 412 GS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKA 468
            S  ++  +     +   Y +   +GD+   E +   ++  G+ S    Y +L++ Y  A
Sbjct: 496 QSKQIKPLMSSFMYVMGEYVR---RGDVHNTEKIFQRMKQFGYQSRFRTYQALIQAYVNA 552

Query: 469 GKMPLIIVERMQKDNV 484
                 + +RM+ DN+
Sbjct: 553 KAPAYGMKDRMKADNI 568


>gi|298572048|gb|ADI88021.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           +V +++ E+K K  S D  +YN+WL+   SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  EVEELVSEMKQKKISLDSYSYNIWLSTRGSQGSPESMEQVFREMDLDPRIIPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K+   EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 37/193 (19%)

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y  L + Y+  ++ +KA T +++M  +      + Y+ +++LY  +   DEV  +  +M 
Sbjct: 11  YGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDEVEELVSEMK 70

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                ++   Y   +S+    G  E  E ++ E +      DPR                
Sbjct: 71  QKKISLDSYSYNIWLSTRGSQGSPESMEQVFREMDL-----DPR---------------- 109

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--RKWVPDHRLI 424
                        I P +TT+  +   Y K GQ+EK  +C +     +  R  +P H L+
Sbjct: 110 -------------IIPNWTTFSTMASMYAKLGQLEKAEQCLRNLETRITNRDRMPYHYLL 156

Query: 425 TAAYNKLEEQGDI 437
            + Y  L  +G++
Sbjct: 157 -SLYGSLGNRGEV 168


>gi|298572018|gb|ADI88006.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 135/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  S    E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K    EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  +    E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSHGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KSGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|298572960|gb|ADI88477.1| PPR protein [Silene vulgaris]
          Length = 224

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++YV  K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYVAAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K    D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKIQLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIAPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            ++Y K+   EKA   L+ +E R   ++R+ Y  L+SLY ++G + EV R+W    S+F 
Sbjct: 121 AAMYSKLGQLEKAEQCLRNLETRITNRDRMPYHYLISLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYVAAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +      D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKIQLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIAPNWTTFSTMAAMYS 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H LI+  Y  L  +G++
Sbjct: 126 KLGQLEKAEQCLRNLETRITNRDRMPYHYLIS-LYGSLGNRGEV 168


>gi|298572016|gb|ADI88005.1| PPR protein [Silene latifolia]
          Length = 224

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 135/224 (60%), Gaps = 2/224 (0%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD ++      ALL++Y   K   +AE LME+M   G+   PLPYN M+ LY+   +LD
Sbjct: 1   VPDTLKDMRLYGALLNAYGGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELD 60

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTL 250
           KV +++ E+K K  S D  +YN+WL+A  SQ   E+ E+ F E+    +I P+W ++ST+
Sbjct: 61  KVEELVSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTM 120

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            S+Y K    EKA   L+ +E R   ++R+ Y  LLSLY ++G + EV R+W    S+F 
Sbjct: 121 ASMYAKSGQLEKAEQCLRNLETRITNRDRMPYHYLLSLYGSLGNRGEVYRVWNIYKSVFP 180

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            + +  Y  VISSLV+ G+ E AE +Y+EW  +  + DP++ N+
Sbjct: 181 NIPNWGYHSVISSLVRSGDIEGAEKLYEEWLPVKSSFDPKIGNL 224



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           K+   Y +LL+ Y     +D+   + ++M +    +    Y  +++  +KL E +K E +
Sbjct: 6   KDMRLYGALLNAYGGAKIRDKAETLMEQMRNKGYCITPLPYNVMMTLYMKLDELDKVEEL 65

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-VTKGIKPCYTTWELLTWGYL 395
             E +    + D    NI L+A  ++   E  E  +  + +   I P +TT+  +   Y 
Sbjct: 66  VSEMKQKKISLDSYSYNIWLSARGSQGSPESMEQVFQEMDLDPRIVPNWTTFSTMASMYA 125

Query: 396 KKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDI 437
           K GQ+EK  +C +     +  R  +P H L++  Y  L  +G++
Sbjct: 126 KSGQLEKAEQCLRNLETRITNRDRMPYHYLLS-LYGSLGNRGEV 168


>gi|296090465|emb|CBI40661.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 140/246 (56%), Gaps = 5/246 (2%)

Query: 12  AARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHK 71
           A R+ S++  +   L    E   +   D L  R+  L   KRS    +++W  EG+ VH 
Sbjct: 27  AFRLLSSRTLRSEVL---EESPNSPENDDLKSRIFKLRLPKRSVTNVLQRWLGEGNQVHI 83

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
            EL  I +ELR+ +RYKHALE+ EWM    + +L   D AV +DL++++ G+ +AE +FE
Sbjct: 84  SELRNISKELRRAQRYKHALEISEWMVSHDEFELSDSDNAVRIDLMTRVFGIDAAERYFE 143

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            LP   +  +T +ALLHSY   K + +AE L E++ E       L YN M+ LY+S GQ+
Sbjct: 144 GLPSAAKTSETYTALLHSYAGAKLAEKAEELYERIKESNVPLNILLYNEMMTLYMSVGQV 203

Query: 192 DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYST 249
           +KV  +++ELK+    PD+ TYNLW+++CA+  D +   +   E+       D W+ Y  
Sbjct: 204 EKVSLVVEELKRQKVVPDLFTYNLWVSSCAATLDIDGVRRILKEMSNNSSANDGWVRYRN 263

Query: 250 LTSLYI 255
           L ++YI
Sbjct: 264 LANIYI 269


>gi|357131430|ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Brachypodium distachyon]
          Length = 612

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 219/461 (47%), Gaps = 26/461 (5%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           T++KW  +G+TV + ++   V  LR+ + +  AL++ EW+E    I+LV  DYA  LDL+
Sbjct: 163 TLKKWVNDGNTVDRSDVFFAVLNLRRRRFFSKALQLLEWLEESKLIELVERDYASRLDLM 222

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+ G+  AE F +N+P  +RG      LL + V      +AE +  KM + GF      
Sbjct: 223 AKVHGIYKAEKFIDNIPASLRGEIVYRTLLANCVAEVNVKKAEEVFNKMKDLGFPVTVFA 282

Query: 178 YNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            N +L LY  +   ++  V  M++  K++  P + TY L +    +  D E  EK    +
Sbjct: 283 INQLLLLYKRVDKKKISDVLTMME--KEDVKPSLFTYKLLVDTKGASRDIEGMEKVVQSM 340

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           +   I PD +  +T+   YI     EKA   L+ ME    ++NR A   ++ LY  +G K
Sbjct: 341 EAEGITPDLLLQATIAKHYIFGGHREKAEAILESMEGDM-KENRNACKMVMPLYAFLGKK 399

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE----NIYDEWESISGTGDPRV 351
           D+V RIWK   S        E    I +  +LG+ EKAE    N++  W+++S     + 
Sbjct: 400 DDVERIWKVCQS---NTRLDECLSAIEAFGRLGDVEKAEEVFGNMFKTWKTLSS----KY 452

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N ++  Y N+N ++  +    R+   G +   +T + L   Y+  G++EK  E     +
Sbjct: 453 YNAMMRVYANQNLMDKGKELAKRMEEDGCRLGISTLDSLVKLYVDAGEVEKA-ESLLHKL 511

Query: 412 GSVRKWVPDHR---LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAK 467
               K  P +    ++  +Y+K+   GD+  +E +   LR  G+      Y  LL  Y  
Sbjct: 512 SVKNKMKPQYSSYLMLLDSYSKI---GDVHNSEKVFSKLRQMGYNGRIRQYQLLLHAYLH 568

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSI 508
           A        ERM+ DN+  ++    +L  T   P ++  SI
Sbjct: 569 AKAPVYGFRERMKADNIFPNSVIASLLAATD--PFNKKKSI 607


>gi|356557435|ref|XP_003547021.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 211/469 (44%), Gaps = 9/469 (1%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           D+L RR+  L   + S     R W  +G  VH  ++   +  LRKL   K AL+V EW+ 
Sbjct: 39  DSLSRRIEKLPKGE-SVGSAFRSWMRDGLPVHGGDIFHAINRLRKLNMNKRALQVMEWVI 97

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            +   +    DY+  ++  +K+ G+S  E  F  +P + +     + L+ + +       
Sbjct: 98  RERPYRPRELDYSYLVEFTTKLHGISHGEKLFSRIPVEFQSELLYNNLVIACLDKGVIKL 157

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLA 217
           +   M+KM E GF    L +N ++ L+ S G+   +P++L ++K +  +P V TYN+ + 
Sbjct: 158 SLEYMKKMRELGFPISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMK 217

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
             A++++ E   K F  +K  +++P+ ISY  L   +    L       ++ +EK     
Sbjct: 218 IEANEHNLENLVKVFGRMKVAQVEPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGN 277

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N      LL LY  +G + E+ R+W  +  L   +    Y   I +  ++G+  +AE I+
Sbjct: 278 NWSTLDVLLMLYGYLGNQKELERVWATIQEL-PSIRSKSYMLAIEAFGRIGQLNRAEEIW 336

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S  G       N +++ Y     ++ A   Y  +   G KP   T+  L  G LK 
Sbjct: 337 LEMKSTKGLKSVEQFNSMMSVYCKHGFIDRAAKLYKNMKASGCKPNAITYHQLALGCLKS 396

Query: 398 GQMEKVLECFKKAI-----GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
           G  E+ L+     +       VR   P      +      E+GD+   E L      A +
Sbjct: 397 GMAEQALKTLDLGLRLTISKRVRNSTPWLETTLSIVEIFAEKGDVGNVERLFEEFHKAKY 456

Query: 453 VS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
              T +YN+L++ Y KA      +++RM     + DAET  +LKI  + 
Sbjct: 457 CRYTFVYNTLIKAYVKAKIYNPNLLKRMILGGARPDAETYSLLKIAEQF 505


>gi|356498381|ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 609

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 207/455 (45%), Gaps = 7/455 (1%)

Query: 32  KKGAGGRDTLGRRLLSLVYAKR-SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHA 90
           KK + GR T      ++  A   S    + KW E G  + + E+   VRELR+ K Y  A
Sbjct: 134 KKKSQGRRTQSELFKAIANAPGLSVDSALNKWVEHGKELSRKEILLAVRELRRRKMYGRA 193

Query: 91  LEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150
            ++ +W+E    ++ +  DYA  LDLI+K+RGL  AE + E++P+  RG      LL + 
Sbjct: 194 FQLFQWLESNKKLEFMESDYASQLDLIAKLRGLPKAEKYIESVPESFRGELLYRTLLANC 253

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210
                    E +  KM +          N +L LY    +      +L   K+N  P + 
Sbjct: 254 ASQNNLIATEKIFNKMKDLDLPLTAFACNQLLLLYKKLDKKKIADVLLLMEKENVKPSLF 313

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY + + +    ND    E+ F  +K+   +PD    + L   Y    L EKA   LKEM
Sbjct: 314 TYRILIDSKGQSNDIAGMEQVFETMKEEGFEPDIQIQALLARHYTSSGLKEKAEAMLKEM 373

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           E    ++N+   ++LL LY N+G  DEV RIWK   S   K    +    + +  KL + 
Sbjct: 374 EGENLKENQWVCATLLRLYANLGKADEVERIWKVCES---KPRVEDCLAAVEAWGKLNKI 430

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           E+AE ++ E  S     + +  ++LL  Y N   L   +     +   G++    TW+ L
Sbjct: 431 EEAEAVF-EMVSKKWKLNSKNYSVLLKIYANNKMLTKGKELVKLMADSGVRIGPLTWDAL 489

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
              Y++ G++EK      KAI    +  P      A   +  ++GD+  +E + + +R A
Sbjct: 490 VKLYIQAGEVEKADSILHKAIQQ-NQLQPMFTTYLAILEQYAKRGDVHNSEKIFLKMRQA 548

Query: 451 GHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
           G+ S    +  L++ Y  A      I ER++ DN+
Sbjct: 549 GYTSRISQFQVLIQAYVNAKVPAYGIRERIKADNL 583


>gi|125532536|gb|EAY79101.1| hypothetical protein OsI_34208 [Oryza sativa Indica Group]
          Length = 369

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 143/254 (56%), Gaps = 3/254 (1%)

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIW 302
           W SY+T+  + ++  + E+A    +E EK+  +K NRVAY  LL++Y ++G   EV RIW
Sbjct: 111 WHSYATIGKVLMQSGMEERALQAFQESEKKIAKKSNRVAYGFLLTMYADLGMNSEVDRIW 170

Query: 303 KKMMS-LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
               S + A   ++ Y C IS L+K+ +   AE  Y+EWES     D R+ N+LL AY  
Sbjct: 171 DVYKSKVPASACNSMYMCRISVLLKMNDIVGAEKAYEEWESKHVYHDSRLINLLLTAYCK 230

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV-RKWVPD 420
              +E AE+  ++ V KG  P   TW  L  GY K GQ  K  +  KKA+ S   +W+PD
Sbjct: 231 EGLMEKAEALVDQFVKKGRTPFGNTWYKLAGGYFKVGQASKAADLTKKALASASNEWIPD 290

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
              +  + N   EQ +++ AE ++  L+     + +IY+ LL+TY  AGK    ++ RM+
Sbjct: 291 LTNVLMSLNYFAEQKNVEAAEEMMSLLQRLVTPTRDIYHGLLKTYVNAGKPVSDLLRRMK 350

Query: 481 KDNVQMDAETQKVL 494
           KD ++ D ET+K+L
Sbjct: 351 KDGMEADEETEKIL 364


>gi|115458674|ref|NP_001052937.1| Os04g0450200 [Oryza sativa Japonica Group]
 gi|113564508|dbj|BAF14851.1| Os04g0450200, partial [Oryza sativa Japonica Group]
          Length = 292

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 9/280 (3%)

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164
           L   DY + +DLI+++ G ++AE+FFE LP  ++  +  +ALLHSY ++K + +AE L +
Sbjct: 4   LSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFK 63

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQN 223
           +M +       L YN M+ LYIS G+LDKVP + +ELK+   SPD+ TYNL ++A A+  
Sbjct: 64  RMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASM 123

Query: 224 DKETAEKAFLELKKTKIDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
           D E  +    E+ K   DP+    W  Y  L  +Y+       +  +L E E +  R+  
Sbjct: 124 DLEGFKGILDEMSK---DPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREW 180

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + Y  L+ L+T +G +D +  IWK M+    +M    Y CV+SS +  G+ + A  + D+
Sbjct: 181 ITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ 240

Query: 340 WE-SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
           W+ S +   D    N L  A++N    + A SF   ++ K
Sbjct: 241 WQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQK 280


>gi|11138066|dbj|BAB17739.1| putative DNA-binding protein [Oryza sativa Japonica Group]
          Length = 591

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 208/446 (46%), Gaps = 21/446 (4%)

Query: 48  LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS 107
           LV  +   A   +KW  +G+T+ + EL  ++  LRK K Y  AL++ E++E      L  
Sbjct: 131 LVSPRVDVAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGE 190

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
            DYA  +DL++K+ G+  AE + EN+P   RG      LL + V      + E +  KM 
Sbjct: 191 RDYASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMK 250

Query: 168 ECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
           + GF       N +L LY  +   +L  V  M++  K+N  P + TY L +    +  D 
Sbjct: 251 DLGFPVTVFSCNQLLLLYKRVDKKKLGDVLTMME--KENVKPSLFTYKLLVDTKGAARDI 308

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E  EK    ++   I+PD +  +T+   YI     EKA   L+++E     +NR A   +
Sbjct: 309 EDMEKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFV 368

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WE 341
           L LY  +G K +V RIW K+  + A+++  E    I +  KLG+ EKAE I++     W+
Sbjct: 369 LPLYAFLGKKADVERIW-KVCEVNARLD--ECMSAIEAFGKLGDVEKAEEIFENMFKTWK 425

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           ++S        N +L  Y N+   +  +    R+   G +   +T + L   Y   G++E
Sbjct: 426 TLSF----EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE 481

Query: 402 KVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIY 458
           K      K      ++     + ++  +Y+K   +GD+  AE L   +R  G+      Y
Sbjct: 482 KADSILHKLSYKNKIKPLYTTYLMLLDSYSK---KGDVHNAEKLFSKVRQMGYTGRIRQY 538

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNV 484
             LL  Y  A   P    ERM+ D++
Sbjct: 539 QLLLEAYLNAKTPPYGFKERMKADDI 564


>gi|125525413|gb|EAY73527.1| hypothetical protein OsI_01409 [Oryza sativa Indica Group]
          Length = 611

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 208/446 (46%), Gaps = 21/446 (4%)

Query: 48  LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS 107
           LV  +   A   +KW  +G+T+ + EL  ++  LRK K Y  AL++ E++E      L  
Sbjct: 151 LVSPRVDVAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGE 210

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
            DYA  +DL++K+ G+  AE + EN+P   RG      LL + V      + E +  KM 
Sbjct: 211 RDYASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMK 270

Query: 168 ECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
           + GF       N +L LY  +   +L  V  M++  K+N  P + TY L +    +  D 
Sbjct: 271 DLGFPVTVFSCNQLLLLYKRVDKKKLGDVLTMME--KENVKPSLFTYKLLVDTKGATRDI 328

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E  EK    ++   I+PD +  +T+   YI     EKA   L+++E     +NR A   +
Sbjct: 329 EDMEKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFV 388

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WE 341
           L LY  +G K +V RIW K+  + A+++  E    I +  KLG+ EKAE I++     W+
Sbjct: 389 LPLYAFLGKKADVERIW-KVCEVNARLD--ECMSAIEAFGKLGDVEKAEEIFENMFKTWK 445

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           ++S        N +L  Y N+   +  +    R+   G +   +T + L   Y   G++E
Sbjct: 446 TLSF----EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE 501

Query: 402 KVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIY 458
           K      K      ++     + ++  +Y+K   +GD+  AE L   +R  G+      Y
Sbjct: 502 KADSILHKLSYKNKIKPLYTTYLMLLDSYSK---KGDVHNAEKLFSKVRQMGYTGRIRQY 558

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNV 484
             LL  Y  A   P    ERM+ D++
Sbjct: 559 QLLLEAYLNAKTPPYGFKERMKADDI 584


>gi|56783681|dbj|BAD81093.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|56784204|dbj|BAD81589.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|125569936|gb|EAZ11451.1| hypothetical protein OsJ_01319 [Oryza sativa Japonica Group]
          Length = 611

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 208/446 (46%), Gaps = 21/446 (4%)

Query: 48  LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS 107
           LV  +   A   +KW  +G+T+ + EL  ++  LRK K Y  AL++ E++E      L  
Sbjct: 151 LVSPRVDVAGATKKWLNDGNTLERSELFYVLLSLRKRKLYTKALQLLEYVEESKLFDLGE 210

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
            DYA  +DL++K+ G+  AE + EN+P   RG      LL + V      + E +  KM 
Sbjct: 211 RDYASRVDLVAKVHGIYKAEKYIENVPASHRGEVVYRTLLANCVAIANVKKTEQVFNKMK 270

Query: 168 ECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
           + GF       N +L LY  +   +L  V  M++  K+N  P + TY L +    +  D 
Sbjct: 271 DLGFPVTVFSCNQLLLLYKRVDKKKLGDVLTMME--KENVKPSLFTYKLLVDTKGAARDI 328

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E  EK    ++   I+PD +  +T+   YI     EKA   L+++E     +NR A   +
Sbjct: 329 EDMEKVIQAMQADGIEPDLLIQATIARHYIFGGYREKAEAILEQIEGDDINENRSACKFV 388

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WE 341
           L LY  +G K +V RIW K+  + A+++  E    I +  KLG+ EKAE I++     W+
Sbjct: 389 LPLYAFLGKKADVERIW-KVCEVNARLD--ECMSAIEAFGKLGDVEKAEEIFENMFKTWK 445

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           ++S        N +L  Y N+   +  +    R+   G +   +T + L   Y   G++E
Sbjct: 446 TLSF----EYYNAMLKVYANKKLFDKGKELAKRMGDDGCRLGPSTLDSLVKLYSDAGEVE 501

Query: 402 KVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIY 458
           K      K      ++     + ++  +Y+K   +GD+  AE L   +R  G+      Y
Sbjct: 502 KADSILHKLSYKNKIKPLYTTYLMLLDSYSK---KGDVHNAEKLFSKVRQMGYTGRIRQY 558

Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNV 484
             LL  Y  A   P    ERM+ D++
Sbjct: 559 QLLLEAYLNAKTPPYGFKERMKADDI 584


>gi|449450908|ref|XP_004143204.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Cucumis sativus]
 gi|449517541|ref|XP_004165804.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Cucumis sativus]
          Length = 527

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 216/452 (47%), Gaps = 13/452 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
            R W  +G  +H+ ++   +  LRKL+R K ALEV EW+  +   ++   DY+  L+   
Sbjct: 77  FRSWMGDGFPIHRGDIFHAINRLRKLERNKRALEVMEWVIREKPYRINELDYSYLLEFTI 136

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K  G+S  E  F N+P + +G    + L+ + +       + A M KM E G     L +
Sbjct: 137 KHHGISQGEKLFSNIPVEFQGELLFNNLVIACLDKGAIRLSLAYMRKMREVGHSISHLVF 196

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ++ L+ S  +   +P++L ++K +  P  V TYN+ +   A++++ E   + F ++++
Sbjct: 197 NRLIILHSSFRRRKIIPKILSQMKADKVPLHVSTYNILMKIEANEHNIEGLMRVFSDMRR 256

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            K++P+ +SY  + + +   +L       ++ +EK     N   Y  L+ LY  +  + E
Sbjct: 257 AKVEPNEVSYCIVATAHAVAKLYTVVEAYVEALEKSIAGNNWSTYDVLIILYGYLNKEKE 316

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           + R W  ++  F  +    +   I +  ++G   +AE ++ E ++  G       N +L+
Sbjct: 317 LERTW-GIIQGFPHIPSKSFILAIEAFGRIGLLSRAEELWLEMKTKRGIKATDQFNSILS 375

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS---- 413
            Y     ++ A   + ++   G KP   T+  L +G LK G +E+ L+     +GS    
Sbjct: 376 VYCRHGLIKKATEIFRKIEANGCKPNAITFRHLAFGCLKAGLVEEALKTLD--LGSNTTS 433

Query: 414 ----VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKA 468
               VRK  P      +    L E+GDI+  E L   L+ A +   T +YN+L++ Y KA
Sbjct: 434 STKIVRKSTPWLETTLSMIEILAERGDIENTEKLFKELKEAKYTRYTFVYNTLIKAYVKA 493

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
                 ++ RM     + D+ET  ++K++ + 
Sbjct: 494 KIHNPNLLRRMIVGGARPDSETYSLIKLSEQF 525


>gi|148906608|gb|ABR16456.1| unknown [Picea sitchensis]
          Length = 600

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 201/441 (45%), Gaps = 7/441 (1%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           ++ +W  +G+ + + E+      LR  + +K  L+V +W+E +   K    DYA  LD+I
Sbjct: 149 SLEQWLADGNVLTRREVVITFVHLRNRRMFKRLLKVSDWLEGKKPFKKTERDYASRLDVI 208

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +KI G+   E +F ++P  MRG      LL +Y       +AE + +KM   GF      
Sbjct: 209 TKILGIFKGEKYFASIPSDMRGQRAYGTLLANYSSTCNVEKAEEIFKKMKAEGFSLTAFE 268

Query: 178 YNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN +L LY  +   ++  V +M+++  +   P + TY + +       D    E+    +
Sbjct: 269 YNQLLLLYKRLDKKKIQDVLKMMED--EGVKPTIFTYKILIDVKGWMGDIGGMEQVAENM 326

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   I+ D  +   L   YI+  L EKA   LKE+E  + +  R     LL LY  +G  
Sbjct: 327 KSEDIEMDSGTLELLARHYIRAGLAEKAEVVLKELENVSLKDKRSRLKMLLPLYAELGKP 386

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV RIWK   + F  +   EY   + +  KLG+ EKAE  +++  +       +  N L
Sbjct: 387 TEVERIWKDFEA-FPALRLDEYATGVVAWGKLGQIEKAEITFEKLLNSGKKLSAKHYNAL 445

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L  Y + + L   +    R+   G       W+ L   ++  G++EK      KA    +
Sbjct: 446 LNVYADHHLLLKGKELVKRMSDNGCTIEPPIWDALIRLHVNAGELEKADSILFKACNQ-K 504

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI 474
           +  P +  +     K  E+GD+  AE +   +R AG+  S   + SLL++YA A      
Sbjct: 505 QLRPKYWTMVTILEKYAERGDVANAEKIFDRMRQAGYTGSAGAFASLLKSYANARVPAYG 564

Query: 475 IVERMQKDNVQMDAETQKVLK 495
             ERM+ D + ++     +++
Sbjct: 565 FRERMKADKIYLNGRLNSLME 585


>gi|125535921|gb|EAY82409.1| hypothetical protein OsI_37623 [Oryza sativa Indica Group]
          Length = 611

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 218/480 (45%), Gaps = 22/480 (4%)

Query: 17  STKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYA-----KRSAAITMRKWKEEGHTVHK 71
           S+    I  +GL+  +  A   + + +   +L+ A     +   A  ++KW  +G+T+ +
Sbjct: 115 SSDEDTIDAIGLSEVEADAKPEEPIKKSQSTLLKALLESPRVDVAGALKKWLNDGNTLDR 174

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
            EL  ++  LR+ K Y  AL++ E++E    I L   DYA  +DL++K   +  AE + E
Sbjct: 175 SELFYVLLSLRRRKLYIKALQLLEYVEESKLIDLGERDYASRVDLVAKTHSIYKAEKYIE 234

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNG 189
           N+P   RG      LL + V      +AE +  KM + GF       N +L LY  +   
Sbjct: 235 NVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDLGFPVSVFSCNQLLLLYKRVDKK 294

Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           +L  V  M++  K+N  P + TY L +    +  D E  EK    ++   I+PD +  +T
Sbjct: 295 KLGDVLTMME--KENVKPSLFTYKLLVDTKGAARDIEDMEKVIQAMQADGIEPDLLFQAT 352

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +   YI     EKA   L++M      +NR A   +L LY  +G  D+V RIW K+    
Sbjct: 353 IARHYIFGGYREKAEAILEQMVGDDINENRSACKFVLPLYAFLGKNDDVERIW-KVCEAN 411

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTGDPRVPNILLAAYINRNQL 365
           A+++  E    I +  KLG+ EKAE I+D     W+++S     +  N +L  Y N+   
Sbjct: 412 ARLD--ECMSAIEAFGKLGDVEKAEEIFDNMFKTWKTLSS----KYYNAMLKVYANKKLF 465

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           +  +    R+   G +    T + L   Y   G++EK      K +    K  P +    
Sbjct: 466 DKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVEKADSILHK-LSYKNKIKPMYTTYL 524

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
              +   ++GD+  AE L   +R  G+      Y  LL  Y  A   P    ERM+ D++
Sbjct: 525 MLLDSYSKKGDVHNAEKLFSKVRQMGYTGRIRQYQLLLEAYLNAKTPPYGFKERMKADDI 584


>gi|356534606|ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 600

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 201/431 (46%), Gaps = 12/431 (2%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW  +G  + + E+   VRELR+ K Y  A ++ +W+E    ++ +  DYA  LDLI
Sbjct: 152 ALSKWAGQGKELSRKEIFLAVRELRRRKMYGRAFQLFQWLESNKKLEFMESDYASQLDLI 211

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+RGL  AE + E++P+  RG      LL +         +E +  KM +         
Sbjct: 212 AKLRGLPQAEKYIESVPESFRGELLYRTLLANCASQNNLIASEKIFNKMKDLDLPLTVFA 271

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            N +L LY    +      +L   K+N  P + TY + + +    ND    E+ F  +K+
Sbjct: 272 CNQLLLLYKKLDKKKIADVLLLMEKENVKPSLFTYRILIDSKGHSNDIAGMEQVFETMKE 331

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
              +PD    + L   Y    L EKA   LKE+E     + +   ++LL LY N+G  DE
Sbjct: 332 EGFEPDIQLQALLARHYTSAGLKEKAEAILKEIEGENLEEKQWVCATLLRLYANLGKADE 391

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V RIWK   S   +++D      + +  KL + E+AE ++ E  S     + +  +ILL 
Sbjct: 392 VERIWKVCESK-PRVDDC--LAAVEAWGKLEKIEEAEAVF-EMASKKWKLNSKNYSILLK 447

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            Y N   L   +    R+   G++    TW  L   Y++ G++EK     +KAI   +  
Sbjct: 448 IYANNKMLAKGKDLIKRMADSGLRIGPLTWNALVKLYIQAGEVEKADSVLQKAIQQSQL- 506

Query: 418 VPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
                + T   + LE+   +GD+  +E + + +R AG+ S    +  L++ Y  A     
Sbjct: 507 ---QPMFTTYLDILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFKVLMQAYVNAKVPAY 563

Query: 474 IIVERMQKDNV 484
            I ERM+ DN+
Sbjct: 564 GIRERMKADNL 574


>gi|414877074|tpg|DAA54205.1| TPA: hypothetical protein ZEAMMB73_351899 [Zea mays]
          Length = 613

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 209/455 (45%), Gaps = 21/455 (4%)

Query: 40  TLGRRLLSLVYAKRSAAIT--MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           T G  LL  V       +T  + KW ++G+ + + EL  ++  LRK K Y  ALE+ E++
Sbjct: 143 TFGSTLLKTVLEAPRHQVTSALEKWAKDGNALDRGELYYVLLNLRKRKWYHKALELVEYV 202

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
           +    ++L   DYA  +DL +K+ GL  AE + E +P   R       LL + V      
Sbjct: 203 QNSQLLELGERDYAARVDLTAKVYGLHKAEQYIEKIPASHRSEVVYRTLLANCVAEGNVK 262

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
           ++E +  +M + GF       N +L LY  +   ++  V  M++  K++  P + TY + 
Sbjct: 263 KSEQVFNRMKDLGFPVTTFSSNQLLLLYKRLDKKKIADVLTMME--KEDVKPSIFTYKVL 320

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           + A     D E  EK    + K  I+PD    +T+   YI     +KA T L+ ME    
Sbjct: 321 VDAKGMVGDVEAMEKVVESMVKDGIEPDLTFNATIARQYIFNGQRDKAETLLESMEGDDI 380

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           +KNR A   LL LY  +G  D V RIW K+     +++  E    I +  KLG  EKAE 
Sbjct: 381 QKNRAACKFLLPLYAFLGNGDAVERIW-KVCEDNTRID--ECLSAIDAFGKLGNVEKAEK 437

Query: 336 IYDE----WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           ++++    W+++S     +    LL  Y N+N L+  E    R+  +G K    T   L 
Sbjct: 438 VFEDMFVKWKNLSS----KYYTALLKVYANQNLLDKGEELAKRMDEEGAKFGTPTLNALV 493

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
             Y   G++EK      K   S++  V P +       +   ++GD+  +E +   LR  
Sbjct: 494 KLYADAGEVEKAESLLHKL--SLKNNVKPSYSSYMTLLDSYSKKGDVHNSEKVFNKLRQI 551

Query: 451 GHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
           G+     +Y  LL +Y  A        ERM+ DN+
Sbjct: 552 GYTGRIRMYQFLLHSYLHAKAPAYGFKERMKADNI 586


>gi|356547249|ref|XP_003542028.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 223/508 (43%), Gaps = 13/508 (2%)

Query: 3   LRSLGATLAAARVFST---KAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM 59
           +RS+ A  A  R+          I +L L    +     D+L RR+  L   + S     
Sbjct: 1   MRSVTAIFAQQRLVQLIRRTPCDIISLKLFC-TQATQNHDSLSRRIERLPKGE-SVGAAF 58

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
             W  +G  VH  ++   V  LRKL   K AL+V EW+  +   +    DY+  ++  +K
Sbjct: 59  CSWMRDGLPVHGVDVFHAVNRLRKLNMNKRALQVMEWVIRERPYRPKELDYSYLVEFTTK 118

Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           + G+S  E  F  +P + +     + L+ + +       +   M+KM E GFL   L +N
Sbjct: 119 LHGISHGEKLFSRIPVEFQNELLYNNLVIACLDKGVIKLSLEYMKKMRELGFLISHLVFN 178

Query: 180 HMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            ++ L+ S G+   +P++L ++K +  +P V TYN+ +   A++++ E   K F  +K  
Sbjct: 179 RLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEANEHNLENLVKFFSRMKVA 238

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           ++ P+ ISY  L   +    L       ++ +EK     N      LL LY  +G + E+
Sbjct: 239 QVAPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDVLLMLYGYLGNQKEL 298

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            R+W  +  L   +    Y   I +  ++G+  +AE ++ E ES  G       N +++ 
Sbjct: 299 ERVWATIREL-PSVRSKSYMLAIEAFGRIGQLNQAEELWLEMESTKGLKSVEQFNSMMSV 357

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-----GS 413
           Y     +  A   Y  +   G KP   T+  L  G LK G  E+ L+     +       
Sbjct: 358 YCKHGFIGKAAKLYKNMKASGCKPNAITYRQLALGCLKSGMAEQGLKTLDLGLRLTISKR 417

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMP 472
           VR  +P      +      E+GD+   E L      + +   T +YN+L++ Y KA    
Sbjct: 418 VRNSIPWLETTLSIVEIFAEKGDMGNVERLFEEFHKSKYCRYTFVYNTLIKAYVKAKIYD 477

Query: 473 LIIVERMQKDNVQMDAETQKVLKITSEM 500
             +++RM     + DAET  +LKI  + 
Sbjct: 478 PNLLKRMILGGARPDAETYSLLKIAEQF 505


>gi|115487560|ref|NP_001066267.1| Os12g0170100 [Oryza sativa Japonica Group]
 gi|77553759|gb|ABA96555.1| DNA-binding protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648774|dbj|BAF29286.1| Os12g0170100 [Oryza sativa Japonica Group]
 gi|125578643|gb|EAZ19789.1| hypothetical protein OsJ_35368 [Oryza sativa Japonica Group]
 gi|215767656|dbj|BAG99884.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 611

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 221/482 (45%), Gaps = 26/482 (5%)

Query: 17  STKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYA-----KRSAAITMRKWKEEGHTVHK 71
           S+    I  +GL+  +  A   + + +   +L+ A     +   A  ++KW  +G+T+ +
Sbjct: 115 SSDEDTIDAIGLSEVEADAKPEEPIKKSQSTLLKALLESPRVDVAGALKKWLNDGNTLDR 174

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
            EL  ++  LR+ K Y  AL++ E++E    I L   DYA  +DL++K   +  AE + E
Sbjct: 175 SELFYVLLILRRRKLYIKALQLLEYVEESKLIDLGERDYASRVDLVAKTHSIYKAEKYIE 234

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNG 189
           N+P   RG      LL + V      +AE +  KM + GF       N +L LY  +   
Sbjct: 235 NVPASHRGEIVYRTLLANCVAIANVKKAEQVFNKMKDLGFPVSVFSCNQLLLLYKRVDKK 294

Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           +L  V  M++  K+N  P + TY L +    +  D E  EK    ++   I+PD +  +T
Sbjct: 295 KLGDVLTMME--KENVKPSLFTYKLLVDTKGAARDIEDMEKVIQAMQADGIEPDLLFQAT 352

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +   YI     EK+   L++M      +NR A   +L LY  +G  D+V RIW K+    
Sbjct: 353 IARHYIFGGYREKSEAILEQMVGDDINENRSACKFVLPLYAFLGKNDDVERIW-KVCEAN 411

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTGDPRVPNILLAAYINRNQL 365
           A+++  E    I +  KLG+ EKAE I+D     W+++S     +  N +L  Y N+   
Sbjct: 412 ARLD--ECMSAIEAFGKLGDVEKAEEIFDNMFKTWKTLSS----KYYNAMLKVYANKKLF 465

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRL 423
           +  +    R+   G +    T + L   Y   G++EK      K      ++     + +
Sbjct: 466 DKGKELAKRMGDDGCRLGPYTLDSLVKLYSDAGEVEKADSILHKLSYKNKIKPMYTTYLM 525

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKD 482
           +  +Y+K   +GD+  AE L   +R  G+      Y  LL  Y  A   P    ERM+ D
Sbjct: 526 LLDSYSK---KGDVHNAEKLFSKVRQMGYTGRIRQYQLLLEAYLNAKTPPYGFKERMKAD 582

Query: 483 NV 484
           ++
Sbjct: 583 DI 584


>gi|6958202|gb|AAF32491.1|AF091837_1 DNA-binding protein [Triticum aestivum]
          Length = 612

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 203/431 (47%), Gaps = 11/431 (2%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           T++KW + G+T  + ++  ++  LRK K Y  AL++ EW+E    I L   DYA  LDL+
Sbjct: 163 TLKKWLDGGNTFDRSDIFYVIMNLRKRKFYFKALQLLEWLEDSKVIDLGERDYASRLDLV 222

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+ G+  AE + +++P   RG      LL + V      ++E +  KM + GF      
Sbjct: 223 AKVHGVYKAEKYIDSIPISHRGEIVYRTLLANCVSEANVKKSEEVFNKMKDLGFPVTVFA 282

Query: 178 YNHMLNLYISNGQLD--KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
            N +L LY    ++D  K+  +L ++ K+N  P + TY L +    +  D    EK    
Sbjct: 283 INQLLLLY---KRVDKKKIADVLAKMEKENVKPSLFTYKLLVDTKGAIRDIAGMEKVVES 339

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++   ++PD +  +T+   YI     EKA   L+ ME    + NR A   LL LY  +G 
Sbjct: 340 MQAEGVEPDLLFQATIAKHYIFAGHREKAEAILESMEGGDIKGNRNACKILLPLYAFLGK 399

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
           KD+V R+W ++     +++  E    I S  +LG+ E+AE ++++  +   T   +  N 
Sbjct: 400 KDDVERMW-QVCEANPRLD--ECLSAIESFGRLGDVERAEKVFEDMFATWKTLSSKFYNA 456

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+  Y ++N  +  +    R+   G +   +T + L   Y+  G+++K      K +   
Sbjct: 457 LMKVYADQNLFKKGKELAKRMDEDGCRLGISTIDSLVKLYVGAGEVDKAESILHK-LSKS 515

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            K  P +       +   ++GDI  +E +   LR  G+      Y  LL  Y  A     
Sbjct: 516 NKMKPQYSSYLMLLDTYSKKGDIHNSEKVFDQLRQMGYNGRVRQYQLLLNAYVHAKTPVY 575

Query: 474 IIVERMQKDNV 484
              ERM+ DN+
Sbjct: 576 GFRERMKADNI 586


>gi|224089975|ref|XP_002308888.1| predicted protein [Populus trichocarpa]
 gi|222854864|gb|EEE92411.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 200/441 (45%), Gaps = 23/441 (5%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW  EG  + + E++  +  LRK + +  AL++ EW E     + V  DYA  
Sbjct: 102 SVQSVLDKWVAEGKDLDRLEISNAMINLRKRRMFGRALQLSEWFEANKPQEFVERDYASR 161

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K+RGL  AE + + +P   +G      LL + V +    +AE +  KM +  F  
Sbjct: 162 LDLIAKVRGLHKAEVYIDKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMRDLEFPI 221

Query: 174 CPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
            P   N +L LY    +LDK      +L   K+N  P + TY + +      ND    ++
Sbjct: 222 TPFACNQLLLLY---KRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTGMDQ 278

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +K   I+PD  + + +   Y+   L EKA   LKEME     ++R A   +L LY 
Sbjct: 279 IVETMKAEGIEPDIRTQAIMARHYVSGGLKEKAEAILKEMEGGNLEEHRWACRFMLPLYG 338

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCV--ISSLVKLGEFEKAENIYD----EWESIS 344
            +G  DEV R+WK     F + +     C+  I +  +L + ++AE +++     W+ +S
Sbjct: 339 ALGKADEVSRVWK-----FCEKSPRLDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLS 393

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
                R  + LL  Y N   L   +    R+   G +    TW+ L   Y++ G++EK  
Sbjct: 394 S----RHYSTLLKVYANHKMLSKGKDLIKRMGDSGCRIGPLTWDALVKLYVEAGEVEKAD 449

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLR 463
               KA+    K  P +        +   +GDI  AE +   +R AG+      + +L++
Sbjct: 450 SILNKAVQQ-NKIKPMYSSFLIIMERYATKGDIHNAEKMFHRMRQAGYQARIRQFQTLIQ 508

Query: 464 TYAKAGKMPLIIVERMQKDNV 484
            Y  A      + ER++ D +
Sbjct: 509 AYIIAKAPCYGMRERLKADGI 529


>gi|145335742|ref|NP_173001.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806396|sp|Q9XI21.2|PPR44_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15480, mitochondrial; Flags: Precursor
 gi|332191207|gb|AEE29328.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 594

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 201/435 (46%), Gaps = 11/435 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW E+G   ++ E    + +LRK + +  AL++ EW++     ++   DYA  
Sbjct: 141 SVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACR 200

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLISK+RG    E + + +P+  RG      LL ++V       AEA+  KM + GF  
Sbjct: 201 LDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPL 260

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
                N ML LY    +      +L   K+N  P++ TY + +    S ND    E+   
Sbjct: 261 STFTCNQMLILYKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVE 320

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K   ++ D  + + +   Y    L EKA   LKEME  +  +NR     LLS+Y  + 
Sbjct: 321 TMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQ 380

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK---AENIYDEWESISGTGDPR 350
            +DEV R+WK          +  Y  V+++++  G+ +K   AE ++++   +S      
Sbjct: 381 REDEVRRVWKIC------EENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSN 434

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           V ++LL  Y++   +   +    ++   G      TW+ +   Y++ G++EK      KA
Sbjct: 435 VYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKA 494

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG 469
           I S ++  P         ++   +GD+   E +   ++ AG+ S    Y +L++ Y  A 
Sbjct: 495 IQS-KQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAK 553

Query: 470 KMPLIIVERMQKDNV 484
                + ERM+ DN+
Sbjct: 554 APAYGMKERMKADNI 568


>gi|5103846|gb|AAD39676.1|AC007591_41 F9L1.43 [Arabidopsis thaliana]
          Length = 623

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 201/435 (46%), Gaps = 11/435 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW E+G   ++ E    + +LRK + +  AL++ EW++     ++   DYA  
Sbjct: 170 SVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACR 229

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLISK+RG    E + + +P+  RG      LL ++V       AEA+  KM + GF  
Sbjct: 230 LDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPL 289

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
                N ML LY    +      +L   K+N  P++ TY + +    S ND    E+   
Sbjct: 290 STFTCNQMLILYKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVE 349

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K   ++ D  + + +   Y    L EKA   LKEME  +  +NR     LLS+Y  + 
Sbjct: 350 TMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQ 409

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK---AENIYDEWESISGTGDPR 350
            +DEV R+WK          +  Y  V+++++  G+ +K   AE ++++   +S      
Sbjct: 410 REDEVRRVWKIC------EENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSN 463

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           V ++LL  Y++   +   +    ++   G      TW+ +   Y++ G++EK      KA
Sbjct: 464 VYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKA 523

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG 469
           I S ++  P         ++   +GD+   E +   ++ AG+ S    Y +L++ Y  A 
Sbjct: 524 IQS-KQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAK 582

Query: 470 KMPLIIVERMQKDNV 484
                + ERM+ DN+
Sbjct: 583 APAYGMKERMKADNI 597


>gi|115436130|ref|NP_001042823.1| Os01g0301500 [Oryza sativa Japonica Group]
 gi|57899055|dbj|BAD87829.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113532354|dbj|BAF04737.1| Os01g0301500 [Oryza sativa Japonica Group]
 gi|222618277|gb|EEE54409.1| hypothetical protein OsJ_01440 [Oryza sativa Japonica Group]
          Length = 484

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 183/382 (47%), Gaps = 9/382 (2%)

Query: 33  KGAGGRDTLGRRLLSLVYAKRSAAIT--MRKWKEEGH--TVHKYELNRIVRELRKLKRYK 88
           KG   +  LGRRLL L  A    +++  + +W  EG    +   +L +  R+L K+KR  
Sbjct: 38  KGKKDKRPLGRRLLELGDAAGEGSVSRVLDEWVREGREEAIAAADLAKCARDLHKVKRDA 97

Query: 89  HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSAL 146
           HALE+ +WM     + +    YA+HL+L+  + G+ +AE +F  +P   R  +  T  AL
Sbjct: 98  HALELMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGAL 157

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 205
           L+ Y   K   +A  +  +M E G        N+++ LY+  GQ  KV  +  E+K +N 
Sbjct: 158 LNCYCSAKMEEKATNIYRRMDELGIPSSTKLMNNLMGLYLELGQHSKVANLFDEMKERNV 217

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PD +T  + + + A+ N  +T ++ F  +    +   W  + TL S+Y+   + E+A  
Sbjct: 218 QPDELTCCILMRSHAAHNKIDTVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAEL 277

Query: 266 T-LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-MSLFAKMNDAEYTCVISS 323
             ++  E       R  +  L+  + ++G    V R+WK + M+      +  Y  ++  
Sbjct: 278 AFMRAQEFLGFDHGRHPFYFLMRQFASIGNLRGVNRVWKDIKMTFSYNRTNFSYLLMLQC 337

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L KLG+ ++ + IY EWE      DPR+ N+L  A++       AE  + ++  +G    
Sbjct: 338 LYKLGDTDRMKEIYKEWEYRYENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERGGDFD 397

Query: 384 YTTWELLTWGYLKKGQMEKVLE 405
           + T EL    YL KG     L+
Sbjct: 398 FETCELFREHYLGKGDTTSALK 419


>gi|218188053|gb|EEC70480.1| hypothetical protein OsI_01546 [Oryza sativa Indica Group]
          Length = 484

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 182/382 (47%), Gaps = 9/382 (2%)

Query: 33  KGAGGRDTLGRRLLSLVYAKRSAAIT--MRKWKEEGH--TVHKYELNRIVRELRKLKRYK 88
           KG   +  LGRRLL L  A    +++  + +W  EG    +   +L +  R+L K+KR  
Sbjct: 38  KGKKDKRPLGRRLLELGDAAGEGSVSRVLDEWVREGREEAIAAADLAKCARDLHKVKRDA 97

Query: 89  HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSAL 146
           HALE+ +WM     + +    YA+HL+L+  + G+ +AE +F  +P   R  +  T  AL
Sbjct: 98  HALELMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSGIPSFTRDQNHRTYGAL 157

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 205
           L+ Y   K   +A  +  +M E G        N+++ LY+  GQ  K   +  E+K +N 
Sbjct: 158 LNCYCSAKMEEKATNIYRRMDELGIPSSTKLMNNLMGLYLELGQHSKAANLFDEMKERNV 217

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PD +T  + + + A+ N  +T ++ F  +    +   W  + TL S+Y+   + E+A  
Sbjct: 218 QPDELTCCILMRSHAAHNKIDTVKETFYNMSLLDVPKQWSIFRTLGSIYMNAGMVEEAEL 277

Query: 266 T-LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-MSLFAKMNDAEYTCVISS 323
             ++  E       R  +  L+  + ++G    V R+WK + M+      +  Y  ++  
Sbjct: 278 AFMRAQEFLGFDHGRHPFYFLMRQFASIGSLRGVNRVWKDIKMTFSYNRTNFSYLLMLQC 337

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L KLG+ ++ + IY EWE      DPR+ N+L  A++       AE  + ++  +G    
Sbjct: 338 LYKLGDTDRMKEIYKEWEYRYENYDPRLTNMLTRAHLRNGMTNEAELLWEKVKERGGDFD 397

Query: 384 YTTWELLTWGYLKKGQMEKVLE 405
           + T EL    YL KG     L+
Sbjct: 398 FETCELFREHYLGKGDTTSALK 419


>gi|449506017|ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 608

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 13/436 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW  EG  + + E++  +  LRK + +  AL+  EW+E    ++    DYA  
Sbjct: 155 SVPSALDKWVSEGKDLSRAEISLAMLHLRKRRMFGKALQFSEWLEANGQLEFNQRDYASR 214

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K++GL  AE++   +P   +G      LL +YV      +AE +  KM +  F  
Sbjct: 215 LDLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYVAANNVKKAEEVFNKMKDLEFPM 274

Query: 174 CPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
            P  ++ ML LY  I   +L  +  +++  K+N  P   TY + + A    ND    E+ 
Sbjct: 275 TPFAHDQMLILYKRIDKRKLADILSLME--KENVKPSPFTYKILIDAKGLCNDISGMEQV 332

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K   I PD  + S L   Y+   L +KA   LK+ME+   + +R+    LL LY  
Sbjct: 333 VDSMKAEGIKPDVSTLSLLAKHYVSNGLKDKAKVILKDMEENNSKGSRLPCRILLPLYGA 392

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +  +DEV R+WK      A  +  E    I +  KL   ++AE I+D +         R 
Sbjct: 393 LQMEDEVRRLWKICE---ANPHMEESMAAIVAWGKLKNVQEAEKIFDRFVKTWKKPSTRH 449

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N ++  Y     L   +   N++   G +    TW+ +   Y++ G++EK      KA+
Sbjct: 450 YNTMMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDAVVKLYVEAGEVEKADSFLVKAV 509

Query: 412 G--SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKA 468
               ++     ++ +   Y +   +GD+  AE +   +  +G V     + +LL+ Y  +
Sbjct: 510 QKYGMKPLFTSYKTLMDHYAR---RGDVHNAEKIFDKMIQSGFVPRLGQFGTLLQAYVNS 566

Query: 469 GKMPLIIVERMQKDNV 484
                 + +RM   N+
Sbjct: 567 KTPAYGMKDRMMAYNI 582


>gi|224137686|ref|XP_002322619.1| predicted protein [Populus trichocarpa]
 gi|222867249|gb|EEF04380.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 199/436 (45%), Gaps = 21/436 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW  EG  + + E++  +  LRK + +  AL++ EW+E          DYA  LDLI
Sbjct: 23  VLDKWVAEGRDLDQLEISNAMFNLRKRRLFGRALQLSEWVEANKRKDFDERDYASRLDLI 82

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +K+RGL  AE + E +P  ++G      LL + V    + +A  +  KM +         
Sbjct: 83  AKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANNAKKAVEVFNKMKDLELPITLFS 142

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           YN +L LY  + +      +L   K+N  P + TY L +      ND    E+    +K 
Sbjct: 143 YNQLLLLYKRHDKKKIADVLLSMEKENVKPSLFTYILLIDTKGQSNDIAGMEQIAETMKA 202

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I+PD  + + +   Y+   L EKA   LKEME     ++R A   +L LY  +G  DE
Sbjct: 203 EGIEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNLEEHRWACQFMLPLYGTLGKADE 262

Query: 298 VLRIWKKMMSLFAKMNDAEYTCV--ISSLVKLGEFEKAENIYD----EWESISGTGDPRV 351
           V R+WK     F K +     C+  I +  +L +  +AE +++     W+ +S     + 
Sbjct: 263 VSRLWK-----FCKKSPRLDECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSS----KH 313

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            + LL  Y N   L   +    ++   G +    TW+ L   Y++ G++EK      KA+
Sbjct: 314 YSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAGEVEKADSILNKAV 373

Query: 412 --GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKA 468
               ++     + +I   Y K   +GDI  AE +   +R AG+   ++ + +L++ Y  A
Sbjct: 374 QQNQMKPMFSSYMIIMEKYAK---KGDIHNAEKMFHRMRQAGYQARSKQFQTLIQAYINA 430

Query: 469 GKMPLIIVERMQKDNV 484
                 + ER++ D +
Sbjct: 431 KAPCYGMRERLKADGL 446


>gi|302788498|ref|XP_002976018.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
 gi|300156294|gb|EFJ22923.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
          Length = 603

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 214/469 (45%), Gaps = 29/469 (6%)

Query: 39  DTLGRRLLSLVYA---KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
           D L + LL+ ++A     S +  + KWKEEG  +    +  ++  L+   R  HALE+ E
Sbjct: 146 DKLEQELLARIFACKKDESMSSVLDKWKEEGKDLTVSMIVTVINRLKNSNRMAHALEMIE 205

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           W+  + D K      +  L++ ++ +G+++AE  FE L  + +     +ALL  YV    
Sbjct: 206 WVVDEPDYKDFKLARSFQLEITARSKGIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHN 265

Query: 156 SAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
             +AE L E+M + GFL + P   N M+ LY   G   K  +ML++ K     P++ TYN
Sbjct: 266 VKKAEGLFEEMDKAGFLSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYN 325

Query: 214 LWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
           + L   A   D E  EK F E+K      PD  SY TL   Y+K  L +KA  +L  ME 
Sbjct: 326 VMLDLKAKAGDVEGMEKIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEV 385

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
              R+ +  +  ++  Y  +G   +V R+W+K   +     ++ +     ++   GE ++
Sbjct: 386 GPFRRTKATFEYMMLAYGQLGLISDVERMWQKCKMVPGDGFNS-FLAFQRAMALAGEVQR 444

Query: 333 AENIY---DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++++   D+W+        R  N+LLA Y    + E+ E    ++    ++     WE 
Sbjct: 445 VDSMFKHMDKWKRSKTVDLKRHNNLLLAYYKKGMKCEIKE-LEKKMNEMDLRVTLVDWE- 502

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE---EQGDIDGAEHLLVT 446
                      ++ ++  K A   VRK   D     AA   LE   E+ D+  AE     
Sbjct: 503 -----------KEPIKMSKAAKAVVRK---DKEKEMAARKGLEEAVEKADVKAAESAFEK 548

Query: 447 LRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            +        ++N LL+ Y  A       ++RM+ + V+ + ET  +LK
Sbjct: 549 CKAGNMAKVGVWNKLLKAYVNAQVPAYGFLQRMKAEGVEANEETHSLLK 597


>gi|357119107|ref|XP_003561287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Brachypodium distachyon]
          Length = 576

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 207/467 (44%), Gaps = 23/467 (4%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW E+G+ + + E+  ++  L+K + Y  A +  EW+E  + +     DYA H
Sbjct: 123 SVKSVLDKWIEDGNQLERNEVLLVLFHLKKQRLYWKAFQFMEWIERGHLLNFEERDYACH 182

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI++  G+  A  + + +P   R       LL + V+ +   +AE +  ++ +   L 
Sbjct: 183 LDLIARNTGIEDARKYIDRVPKPFRNEVLYETLLVNCVRARDIQKAEEVFREIRD---LS 239

Query: 174 CPLPY---NHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228
            PL     N M+ LY  ++  ++  +  +++  K+N  P   TY L +      ND    
Sbjct: 240 LPLTVSACNQMILLYKRVARTKVADIIMLME--KENIKPSPFTYKLIIDLKGRSNDISGV 297

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
           E    E+K   ++PD+++ + +   YI   L EKA   + E+E    +  R A  SLL L
Sbjct: 298 EVTLNEMKAAGVEPDFVTQTMVAKFYISGGLIEKAKAVVSEIEMEYMKDKRHAVRSLLHL 357

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           Y  +   DEV RIWK  +    K++D  +   I +  KLG  E+AE  ++     +    
Sbjct: 358 YAALSKPDEVARIWK--LCTEPKLDD--FMAAIEAWGKLGCIEQAEETFEAMLEATQKLS 413

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            +  N +L  Y     ++  + F  R+   G      TW+ L   Y+  G++ K     +
Sbjct: 414 SKYYNGMLNVYAENKLMDKGKKFVERMSFDGCPNGPLTWDALVKLYVNSGEVAKADSFLQ 473

Query: 409 KAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLR 463
            A     +  PD R    +Y  L     + GDI  AE +   L+N  +   +  Y  LL 
Sbjct: 474 NAT----EQNPDRRPTYGSYIYLLMAYAKMGDIYNAEKMFDRLKNIRYPGRKPPYPVLLE 529

Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
            Y  A   P   +ERM+ D V+   +  + LK   ++P   V  +  
Sbjct: 530 AYVNAKVRPHGFIERMRADGVRPIKKVMEHLKFLGKLPRGGVPQLIG 576


>gi|225434953|ref|XP_002281058.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial [Vitis vinifera]
          Length = 550

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 210/453 (46%), Gaps = 8/453 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
             +  + W  EG  +H+  +   +  LRKLK  K ALEV EW+  +   +    DY+  L
Sbjct: 97  VGLAFQSWMGEGCPIHRGHIFHAINRLRKLKFNKRALEVMEWVVRERPYRPKELDYSYLL 156

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +  +K+ G+S  E  F ++P + +     + L+ + +       + A M+KM E G    
Sbjct: 157 EFTTKLHGISQGEKLFSHVPLEFQNELLYNNLVIACLDKGVIRLSLAYMKKMRELGHPIS 216

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
            L +N ++ L+ S  +   +P++L ++K +  +  V TYN+ +   A++++ E   K F 
Sbjct: 217 YLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEANEHNIEGLVKVFG 276

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+K+ +++P+ +SY  L + +   +L   A   ++ +EK     N      L+ LY  +G
Sbjct: 277 EMKQQQVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNWSTLDVLIILYGYLG 336

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              ++ R W  +  L   +    Y   I +  ++G+  +AE ++ E +S          N
Sbjct: 337 KPTDLERTWGIVQEL-PHVRSKSYMLAIEAFGRIGQLNRAEELWLEIKSKKELKSTEQFN 395

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG- 412
            +++ Y     ++ A   +  +   G K    T+  L  G LK G +E+ L+  +   G 
Sbjct: 396 SMISVYSKHGFIDKASGLFREMEMNGCKANAITYRNLALGCLKAGLLEEALKTLELGKGL 455

Query: 413 ----SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAK 467
                +RK +P      +      E GD++ AE L   L+ A +   T +YN+L++ Y K
Sbjct: 456 TISTRIRKSIPWLETTLSIVEIFSENGDVENAEKLFEELKTANYTRYTFVYNTLIKAYVK 515

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
           A      ++ RM     + DAET  ++K+  + 
Sbjct: 516 AKVYDPNLLRRMILGGARPDAETYSLMKLAEQF 548


>gi|413917311|gb|AFW57243.1| hypothetical protein ZEAMMB73_018964 [Zea mays]
          Length = 514

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 228/504 (45%), Gaps = 21/504 (4%)

Query: 12  AARVFSTKAAKITTLGLATEKKGAGG-RDTLGRRLLSLVYAKRSAAI--TMRKWKEEGHT 68
           AA  F++  +  T    A    GA G RD  G         +R+A++   MR W  +G  
Sbjct: 19  AAGFFTSSGSNTT----APPPAGAEGLRDEPGEEGSLARRVERAASVGAAMRGWMADGRA 74

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           VH+  +   +  LR+ + ++ AL+V EW+  +   KL   DY+  L+  +K+ G+S AE+
Sbjct: 75  VHRGHVFHAINRLRRHRLHRTALQVMEWIVRERPYKLSELDYSYLLEFTAKVHGISEAES 134

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
            F  +P + R     + L+ + +       + A M KM E      P  YN ++ L+ S 
Sbjct: 135 LFLRVPQECRKELLYNNLVMAALDLNHIKHSYAYMRKMRELSLPISPYVYNRLIILHSSP 194

Query: 189 GQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+   + ++L ++K +   P   TYN+ L   A++++ +   + F  +K+ KI+P+ I+Y
Sbjct: 195 GRRKTISKILSQMKADRVVPHTSTYNILLKIQANEHNIDGLARVFNGMKRAKIEPNEITY 254

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
             L   +    L     T ++ +E      N      LL LY  +G + E+ R W+ M  
Sbjct: 255 GILAIAHAVARLYTVCHTYVEAIENSMTGTNWSTLEILLILYGYLGKEKELKRTWEIMQD 314

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
           L   +    +T  I +  K+G  ++AE I+   +S          N +L+ Y     ++ 
Sbjct: 315 L-PHIRSKSFTLAIEAFGKVGSIDQAEKIWIHIKSTKKLSLTEQFNSMLSVYCRHGVVDK 373

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL--------ECFKKAIGSVRKWVP 419
           A S +  +   G +P   T+  L  G LK G +++ L        E   K + S   W+ 
Sbjct: 374 ASSVFKEMRANGCQPNAITYRHLALGCLKSGLVKEALNTIDMGKKEVVTKKVRSSTPWLE 433

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMPLIIVER 478
              L+   +    E GD++ A+ L   L  + + +++ +YN+LL+ Y KA      +   
Sbjct: 434 TTHLLLENF---AEIGDLENAKRLYSELNESKYSLNSFVYNTLLKAYVKAKVYEPDLSRT 490

Query: 479 MQKDNVQMDAETQKVLKITSEMPV 502
           M       DAET  +L++  +  +
Sbjct: 491 MILRGAMPDAETYSLLRLIEQFKI 514


>gi|224106481|ref|XP_002314181.1| predicted protein [Populus trichocarpa]
 gi|222850589|gb|EEE88136.1| predicted protein [Populus trichocarpa]
          Length = 525

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 210/454 (46%), Gaps = 8/454 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S     + W  EG  +H+ ++   +  LRKL+  K ALEV EW+  +   +L   DY+  
Sbjct: 71  SVGYAFQSWMGEGFPIHRGDVFHTINRLRKLRLNKRALEVMEWVVRERPYRLKELDYSYL 130

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           L+  +K  G+S  E  F ++P + +     + L+ S ++      +   M+KM E G   
Sbjct: 131 LEFTTKHHGISHGEKLFLHVPSEFQNELLYNNLVISCLEKGVIRLSLDYMKKMREQGHPI 190

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
             L +N ++ L+ S G    +P++L +++ +   P V TYN+ +   A++++ +   K F
Sbjct: 191 SYLIFNRLIILHSSPGSRKMIPKILAQMRADKVVPHVSTYNILMKIEANEHNIDGLVKVF 250

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            ++K+ K++P+ +S+  L + +    L   A   ++ +EK     N      L+ LY ++
Sbjct: 251 NDMKRFKVEPNEVSFCILATAHAAARLYTVAEAYVEAVEKSCSGDNWSTLDVLIILYGHL 310

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G + E+ R W  ++ L   +    Y   I +  K+G+  +AE ++ E +SI G       
Sbjct: 311 GKEKELERTWGIVLEL-PHVRSKSYMLAIEAYGKIGQLSRAEELWLEMKSIHGLRSTEQF 369

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLECFKK 409
           N +L+ Y     ++ A   +  +   G K    T+  L  G LK   +E   K LE  K 
Sbjct: 370 NSMLSVYCKHGLIKKATGNFREMEINGCKANSITFRHLALGCLKANLVEEALKTLEMGKN 429

Query: 410 AIGS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYA 466
              S  V+   P      +      E+GD+   E L   L  A ++  T ++N L++ Y 
Sbjct: 430 LTTSNRVKNSTPWLETTLSIIELFAEKGDVVNVEKLFEELAKAKYIRHTFVFNILIKAYV 489

Query: 467 KAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
           KA      ++ RM     + DAET  ++K+  + 
Sbjct: 490 KAKIYSPNLLRRMILGGARPDAETYSLIKLAEQF 523


>gi|15222438|ref|NP_172238.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75163930|sp|Q940Q2.1|PPR19_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07590, mitochondrial; Flags: Precursor
 gi|15809864|gb|AAL06860.1| At1g07590/F22G5_2 [Arabidopsis thaliana]
 gi|332190025|gb|AEE28146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 215/470 (45%), Gaps = 18/470 (3%)

Query: 44  RLLSLVYAKRSAAIT----MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           + LSL   K    +T    ++ W  +G  VH  ++   +  LRKL R K ALE+ EW+  
Sbjct: 66  KCLSLRIEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIR 125

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
           +   +L   +Y+  L+   K+ G+S  E  F  +P + +     + L+ + +       A
Sbjct: 126 ERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLA 185

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAA 218
              M+KM E G+    L YN ++    + G+   + + L  +K +  +P V TY++ +  
Sbjct: 186 LEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKL 245

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
            A++++ +   KAF  +KK  ++P+ +SY  L   +    L   A    +E+EK     N
Sbjct: 246 EANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDN 305

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
                 L+ LY  +G + E+ R W  ++  F  +    Y     +  ++G  ++AE ++ 
Sbjct: 306 WSTLDILMILYGRLGKEKELARTW-NVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWL 364

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           E +++ G  +    N LL+ Y     +E A   +  +   G KP   T+  L  G  K  
Sbjct: 365 EMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAK 424

Query: 399 QMEKVLECFK--------KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
            M++ L+  +        K+IGS   W+     I   +    E+GD++ +E L   ++NA
Sbjct: 425 LMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECF---AEKGDVENSEKLFEEVKNA 481

Query: 451 GHVSTE-IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
            +     +YN+L + Y KA      + +RM     + DAE+  +LK+  +
Sbjct: 482 KYNRYAFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQ 531


>gi|242078281|ref|XP_002443909.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
 gi|241940259|gb|EES13404.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor]
          Length = 521

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 226/490 (46%), Gaps = 22/490 (4%)

Query: 25  TLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAI--TMRKWKEEGHTVHKYELNRIVRELR 82
           +LG    +   G   +L RR+      +R+A++   MR W  +G  VH+  +   +  LR
Sbjct: 42  SLGAEGPRDVPGQEGSLARRV------ERAASVGAAMRGWMADGRAVHRGHVFHAINRLR 95

Query: 83  KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDT 142
           + + ++ AL+V EW+  +   KL   DY+  L+  +K+ G+S AE+ F  +P + +    
Sbjct: 96  RHRLHRTALQVMEWIVRERPYKLSELDYSYLLEFTAKVHGISEAESLFLRVPQEYQKELL 155

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
            + L+ + +       + A M KM E      P  YN ++ L+ S  +   + ++L ++K
Sbjct: 156 YNNLVMAALDLDLIKHSYAYMRKMRELSLPISPYVYNRLIILHSSPSRRKTISKILYQMK 215

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +  +P   TYN+ L   A++++ +   + F ++K+ KI+P+ I+Y  L   +    L  
Sbjct: 216 ADRVTPHTSTYNILLKIQANEHNIDGLARVFSDMKRAKIEPNEITYGILAISHAVARLYT 275

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
              T ++ +E      N      LL LY  +G + E+ R W+ M  L   +    +T  I
Sbjct: 276 VCHTYVEAIENSMTGTNWSTLEILLILYGYLGKEKELKRTWEIMQDL-PHVRSKSFTVAI 334

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            +  K+G  ++AE I+ + +S          N +L+ Y     ++ A S +  +   G +
Sbjct: 335 EAFGKVGSIDQAEKIWVQIKSTKKLSLTEQFNSILSVYCRHGVVDKASSVFKEMRANGCQ 394

Query: 382 PCYTTWELLTWGYLKKGQMEKVL--------ECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
           P   T+  L  G LK G +++ L        E   K + S   W+    L+   +    E
Sbjct: 395 PNAITYRHLALGCLKSGLVKEALNTIDMGKKEVVTKKVRSSTPWLETTHLLLENF---AE 451

Query: 434 QGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQK 492
            GD++ A+ L   L  + +  ++ +YN+LL+ Y KA      ++  M       DAET  
Sbjct: 452 IGDLENAKRLYSELNESKYSRNSFVYNTLLKAYVKAKVYEPDLLRTMILRGAMPDAETYS 511

Query: 493 VLKITSEMPV 502
           +L++  +  +
Sbjct: 512 LLRLIEQFKI 521


>gi|125575301|gb|EAZ16585.1| hypothetical protein OsJ_32057 [Oryza sativa Japonica Group]
          Length = 400

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 195/434 (44%), Gaps = 71/434 (16%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           EE H V K E+  I++ L + +R+  AL++  WM  +  + L  GD A  L+LI+K+ GL
Sbjct: 30  EERH-VAKPEVQSIIKYLCRRRRFSQALQLSMWMTERLHLHLSPGDVANRLELITKVYGL 88

Query: 124 SSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
             A  +F+++PD++                           K  +C        Y  +L 
Sbjct: 89  DRAVEYFDSMPDQL---------------------------KQQQC--------YGSLLK 113

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
            Y     ++K  ++ ++++         YN+ +         E        ++++ I PD
Sbjct: 114 CYAEANCVEKAEELFEKMRGMGMASSYAYNVMMRLYLQNGQVERVHSMHQAMEESGIVPD 173

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
             +  TL ++                      RK +    +L++ Y        V    K
Sbjct: 174 VSTTHTLVAV---------------------LRKKK----TLVAAYV-------VAEDIK 201

Query: 304 KMMSLFAKMN--DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            + ++  K N  ++ Y C I  L+K+ +   AE  Y+EWES     D R+ N+L+ AY  
Sbjct: 202 AIENVLEKANSCNSMYMCRIGVLLKMNDMVGAEKAYEEWESKHVYHDSRLINLLVDAYCK 261

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV-RKWVPD 420
              ++ AE+  ++ + KG  P   T   L  GY K GQ+ K  +  KKA+ S   +W+PD
Sbjct: 262 EGLMDKAEALVDQFIKKGRMPFANTCYKLAGGYFKVGQVSKAADLTKKALASASNEWIPD 321

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
              +  + N   EQ +++ AE ++  L+     + +IY+ LL+TY  AGK    ++ RM+
Sbjct: 322 LTNVLMSLNYFAEQKNVEAAEEMMSLLQRLVTPTRDIYHGLLKTYVNAGKPVSDLLHRMK 381

Query: 481 KDNVQMDAETQKVL 494
           KD ++ D ET+K+L
Sbjct: 382 KDGMEADEETEKIL 395


>gi|357439973|ref|XP_003590264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479312|gb|AES60515.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 557

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 194/432 (44%), Gaps = 16/432 (3%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + KW E+G  + + E+   +  LR+ K Y  AL+  +W+E    ++    +YA  LDLI+
Sbjct: 110 LDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKLDLIA 169

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL  AE + E++P+  RG      LL +    +   + E    KM E GF       
Sbjct: 170 KLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTAFAC 229

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N +L +Y    +      +L   K+N  P   TY + +      ND +   +    +K  
Sbjct: 230 NQLLLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQIVETMKAE 289

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
             + D ++ ++L   Y    L EK    LKE+E    ++N     +LL LY  +G  DEV
Sbjct: 290 GCELDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYAILGRADEV 349

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD----EWESISGTGDPRVPNI 354
            RIWK   S   K    +    I +  +L + E+AE +++    +W+  +     R    
Sbjct: 350 ERIWKVCES---KPRVEDCLAAIEAWGRLKKIEEAEAVFEMMSNKWKLTA-----RNYES 401

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           LL  YI    L   +     +   G     TTW+ L   Y++ G++EK     +KA+   
Sbjct: 402 LLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQKALQQ- 460

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            K  P          +  ++GD+  AE +   LR A ++S    +++L + Y K  K+P 
Sbjct: 461 NKMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAY-KNAKLPA 519

Query: 474 I-IVERMQKDNV 484
             I ERM+ DN+
Sbjct: 520 YGIRERMKADNL 531


>gi|357439923|ref|XP_003590239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479287|gb|AES60490.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 194/432 (44%), Gaps = 16/432 (3%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + KW E+G  + + E+   +  LR+ K Y  AL+  +W+E    ++    +YA  LDLI+
Sbjct: 159 LDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKLDLIA 218

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL  AE + E++P+  RG      LL +    +   + E    KM E GF       
Sbjct: 219 KLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTAFAC 278

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N +L +Y    +      +L   K+N  P   TY + +      ND +   +    +K  
Sbjct: 279 NQLLLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQIVETMKAE 338

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
             + D ++ ++L   Y    L EK    LKE+E    ++N     +LL LY  +G  DEV
Sbjct: 339 GCELDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYAILGRADEV 398

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY----DEWESISGTGDPRVPNI 354
            RIWK   S   K    +    I +  +L + E+AE ++    ++W+  +     R    
Sbjct: 399 ERIWKVCES---KPRVEDCLAAIEAWGRLKKIEEAEAVFEMMSNKWKLTA-----RNYES 450

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           LL  YI    L   +     +   G     TTW+ L   Y++ G++EK     +KA+   
Sbjct: 451 LLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQKALQQ- 509

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            K  P          +  ++GD+  AE +   LR A ++S    +++L + Y K  K+P 
Sbjct: 510 NKMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAY-KNAKLPA 568

Query: 474 I-IVERMQKDNV 484
             I ERM+ DN+
Sbjct: 569 YGIRERMKADNL 580


>gi|357139769|ref|XP_003571450.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590,
           mitochondrial-like [Brachypodium distachyon]
          Length = 517

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 209/453 (46%), Gaps = 8/453 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA   +R W   G  VH+  +   +  LR+ + ++  L+V EW+  +   KL   DY+  
Sbjct: 63  SACAAIRGWMAAGRAVHRGHVFHAINRLRRRRLHRTGLQVMEWVIRERPYKLSELDYSYL 122

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           L+  +K+ G+S AE+ F  +P + R     + L+ + ++      +   M KM E     
Sbjct: 123 LEFTAKVHGISEAESLFLRIPQEYRNELLYNNLVMACLELSLIKLSYGYMRKMRELSLPI 182

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
            P  YN ++ L+ S G+   +P++L ++K +  +P   TYN+ L   A++++ +   + F
Sbjct: 183 SPYVYNRLIILHSSEGRRKTIPKILAQMKASKVTPHTSTYNILLKIQANEHNIDGVARVF 242

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            ++K+ K++P+ I+Y  L   +    L   + T ++ ++      N      LL LY  +
Sbjct: 243 NDMKRAKVEPNEITYGILAISHAVARLYTVSQTYIEAIKNSMTGTNWSTQEILLILYGYL 302

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G + E+   W K+M +   +    +T  I +  K+G  E+AE I+ E +S          
Sbjct: 303 GKEKELKMTW-KLMQVLPHIRSKSFTLAIEAFGKIGSIEQAEEIWGEIKSARKLRLTEQF 361

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF---KK 409
           N +L+ Y     ++ A + +  +   G +P   T+  L  G LK G +++ L      KK
Sbjct: 362 NSMLSVYCRHGVVDKASAVFKEMRASGCQPNAITYRHLALGCLKAGLVKQALNTMDMGKK 421

Query: 410 AIGS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYA 466
            + +  VR   P             E GD++ A+ +   L  + +  ++ +YN+LL+ Y 
Sbjct: 422 EVVTRKVRNSTPWLETTHMLLENFAEIGDLENAKIVYAELNESKYCRNSFVYNTLLKAYV 481

Query: 467 KAGKMPLIIVERMQKDNVQMDAETQKVLKITSE 499
           KA       V  M       DAET  +L++  +
Sbjct: 482 KAKVYEPNFVRTMILRGAMPDAETHSLLRLIEQ 514


>gi|297849054|ref|XP_002892408.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338250|gb|EFH68667.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 206/448 (45%), Gaps = 8/448 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           ++ W  +G  VH  ++   +  LRKL R K ALE+ EW+  +   +    +Y+  L+   
Sbjct: 87  LQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRPGELEYSYLLEFTV 146

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+ G+S  E  F  +P + +     + L+ + +       A   M+KM E G+    L Y
Sbjct: 147 KLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTSHLVY 206

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ++    + G+   + + L  +K +  +P V TY++ +   A++++ +   KAF  +KK
Sbjct: 207 NRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFDGMKK 266

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             ++P+ +SY  L   +    L   A    +E+EK     N      L+ LY  +G + E
Sbjct: 267 AGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSVTGNNWSTLDILMILYGRLGKEKE 326

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           ++R W  ++  F  +    Y     +  ++G  ++AE ++ E +++ G  +    N LL+
Sbjct: 327 LVRTW-NVIRGFHHVRSKSYLLATEAFAQVGNLDRAEELWLEMKNVRGLKETEQFNSLLS 385

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-----KAIG 412
            Y     +E A   +  ++  G KP   T+  L  G  K   M++ L+  +     K   
Sbjct: 386 VYCKDGLIEKAIGVFREMMGDGFKPNSITYRHLALGCAKAKLMKEALKNIEMGSNLKTSN 445

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
           S+R   P      +      E+GD++ +E L   ++NA +     +YN+L + Y KA   
Sbjct: 446 SIRSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYNALFKAYVKAKVY 505

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITSE 499
              + +RM     + DAE+  +LK+  +
Sbjct: 506 DPNLFKRMVLGGARPDAESYSLLKLVEQ 533


>gi|255581582|ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528792|gb|EEF30799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 300

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 143/259 (55%), Gaps = 3/259 (1%)

Query: 32  KKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHAL 91
           ++G    + L RR+  +   K S    + +W EEG +V+K +L   ++ELR  KRY HAL
Sbjct: 42  ERGKDNLNQLYRRISPVGDPKVSIVPILDQWIEEGKSVNKDQLQVFIKELRYCKRYTHAL 101

Query: 92  EVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151
           E+  WM  +    L S D A+ LDL+SK+ G+  AE +FEN+P K++  +  +ALL+ Y 
Sbjct: 102 EISMWMSDKRYFALTSRDVAIRLDLMSKVLGIEQAEKYFENVPQKLKVLEVYNALLNCYA 161

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVV 210
             K   +AEA+M+ M + GF    L YN MLNL+   G   K+  ++ E+++N  + D  
Sbjct: 162 YAKSVDKAEAVMQNMRDLGFAGKTLTYNVMLNLHYQTGNFKKLEALMLEMEENGIAYDRF 221

Query: 211 TYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           T  + L+A A+  D +  EK    ++    +  DW +Y+ + + Y K  L +KA   LK+
Sbjct: 222 TLGIQLSAYAAICDIQRMEKIMSRMESDANVVTDWCNYAIVANGYRKAGLMDKALEMLKK 281

Query: 270 MEKR-TCRKNRVAYSSLLS 287
            E   T +K   AY+ LL+
Sbjct: 282 SEGLITGKKRSSAYNFLLT 300


>gi|297596551|ref|NP_001042753.2| Os01g0280400 [Oryza sativa Japonica Group]
 gi|255673117|dbj|BAF04667.2| Os01g0280400, partial [Oryza sativa Japonica Group]
          Length = 426

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 190/411 (46%), Gaps = 22/411 (5%)

Query: 84  LKRYK-HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDT 142
           L+RY  H L++ E++E      L   DYA  +DL++K+ G+  AE + EN+P   RG   
Sbjct: 1   LRRYLLHFLQLLEYVEESKLFDLGERDYASRVDLVAKVHGIYKAEKYIENVPASHRGEVV 60

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQE 200
              LL + V      + E +  KM + GF       N +L LY  +   +L  V  M++ 
Sbjct: 61  YRTLLANCVAIANVKKTEQVFNKMKDLGFPVTVFSCNQLLLLYKRVDKKKLGDVLTMME- 119

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+N  P + TY L +    +  D E  EK    ++   I+PD +  +T+   YI     
Sbjct: 120 -KENVKPSLFTYKLLVDTKGAARDIEDMEKVIQAMQADGIEPDLLIQATIARHYIFGGYR 178

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA   L+++E     +NR A   +L LY  +G K +V RIW K+  + A+++  E    
Sbjct: 179 EKAEAILEQIEGDDINENRSACKFVLPLYAFLGKKADVERIW-KVCEVNARLD--ECMSA 235

Query: 321 ISSLVKLGEFEKAENIYDE----WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           I +  KLG+ EKAE I++     W+++S        N +L  Y N+   +  +    R+ 
Sbjct: 236 IEAFGKLGDVEKAEEIFENMFKTWKTLSF----EYYNAMLKVYANKKLFDKGKELAKRMG 291

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQ 434
             G +   +T + L   Y   G++EK      K      ++     + ++  +Y+K   +
Sbjct: 292 DDGCRLGPSTLDSLVKLYSDAGEVEKADSILHKLSYKNKIKPLYTTYLMLLDSYSK---K 348

Query: 435 GDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
           GD+  AE L   +R  G+      Y  LL  Y  A   P    ERM+ D++
Sbjct: 349 GDVHNAEKLFSKVRQMGYTGRIRQYQLLLEAYLNAKTPPYGFKERMKADDI 399


>gi|449437992|ref|XP_004136774.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 604

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 177/396 (44%), Gaps = 9/396 (2%)

Query: 92  EVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151
           +  EW+E    ++    DYA  LDLI+K++GL  AE++   +P   +G      LL +YV
Sbjct: 189 QFSEWLEANGQLEFNQRDYASRLDLIAKVQGLPKAESYIAKIPQSFQGEVIHRTLLANYV 248

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDV 209
                 +AE +  KM +  F   P  ++ ML LY  I   +L  +  +++  K+N  P  
Sbjct: 249 AANNVKKAEEVFNKMKDLEFPMTPFAHDQMLILYKRIDKRKLADILSLME--KENVKPSP 306

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
            TY + + A    ND    E+    +K   I PD  + S L   Y+   L +KA   LK+
Sbjct: 307 FTYKILIDAKGLCNDISGMEQVVDSMKAEGIKPDVSTLSLLAKHYVSNGLKDKAKVILKD 366

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           ME+   + +R+    LL LY  +  +DEV R+WK      A  +  E    I +  KL  
Sbjct: 367 MEENNSKGSRLPCRILLPLYGALQMEDEVRRLWKICE---ANPHMEESMAAIVAWGKLKN 423

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++AE I+D +         R  N ++  Y     L   +   N++   G +    TW+ 
Sbjct: 424 VQEAEKIFDRFVKTWKKPSTRHYNTMMNVYGGSKMLTKGKELVNQMAESGCRMDELTWDA 483

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +   Y++ G++EK      KA+   +K  P         ++   +GD+   E     +R 
Sbjct: 484 VVKLYVEAGEVEKADSFLVKAVLQNKK-KPMFTTYITLMDRYASRGDVPNVEKNFAMMRR 542

Query: 450 AGHVST-EIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
            G+V     + +L++ Y  A      + ERM+ DNV
Sbjct: 543 LGYVGRLSQFQTLIQAYVNAKAPAYGMRERMKADNV 578


>gi|307136025|gb|ADN33879.1| DNA-binding protein [Cucumis melo subsp. melo]
          Length = 608

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 198/440 (45%), Gaps = 21/440 (4%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S    + KW  EGH + + +++  +  LRK + +  AL+  EW+E    ++    DYA H
Sbjct: 155 SVTSALDKWVSEGHELSRDDISSTMFGLRKRRMFGKALQFSEWLEASGQLEFNEADYASH 214

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K++GL  AE +   +P+  RG      LL +YV      +AE +  +M +  F  
Sbjct: 215 LDLIAKVQGLHKAETYIAKIPNSFRGEAVYRTLLANYVLANDVKKAEEVFNRMKDLEFPM 274

Query: 174 CPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
               Y+ ML LY  I   ++  +  +++  K+N  P   TY + + A    ND    E+ 
Sbjct: 275 TTFAYDQMLILYKRIDRRRIADILSLME--KENVKPRPFTYKILIDAKGLSNDISGMEQV 332

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K   I  D  +   L   Y+   L +KA   LK  E+   + +R     LL LY  
Sbjct: 333 VDTMKAEGIKLDVDTLLLLAKHYVLGGLKDKAMPILKATEEVNSKGSRWPCRYLLPLYGE 392

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTG 347
           +  +DEV R+W+         N  E    I +  KL   ++AE I+D     W+ +S   
Sbjct: 393 LQMEDEVRRLWEICE---PNPNVEECMAAIVAWGKLKNIQEAEKIFDRVVKTWKRLS--- 446

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
             +  + ++  Y +   L   +   N++   G +     W+ +   Y++ G++EK     
Sbjct: 447 -TKHYSTMIKVYGDSKMLTKGKELVNQMAKSGCRIDPMIWDAVVKLYVEAGEVEKADSFL 505

Query: 408 KKAIG--SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRT 464
            KA+    ++     +R +   Y +   +GD+  +E +   +R +G+ +    + +L++ 
Sbjct: 506 FKAVKQYGMKPLFDSYRTLMVHYAR---KGDVHNSEKIFHKIRQSGYPTHFGQFVTLVQA 562

Query: 465 YAKAGKMPLIIVERMQKDNV 484
           Y  A      + ERM  DNV
Sbjct: 563 YLNAKTPAYGMRERMMADNV 582


>gi|255584236|ref|XP_002532856.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527393|gb|EEF29534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 207/452 (45%), Gaps = 8/452 (1%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
            +  + W  EG  +H+ ++   +  LRKLK  K ALEV EW+  +   +    DY+  L+
Sbjct: 69  GLAFQSWMREGFPIHRGDVFHAINRLRKLKLNKRALEVMEWVIRERPYRPKELDYSYLLE 128

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
             +K+ G+S  E  F  +P + +     + L+ + ++      +   M+KM E G     
Sbjct: 129 FTTKLHGISHGEKLFTRIPTEFQNELLYNNLVIACLEKGVIRLSLEYMKKMRELGHPISH 188

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L +N ++ L+ S G+   +P++L ++K +     V TYN+ +   A++++ E   K F E
Sbjct: 189 LIFNRLIILHSSPGRRKMIPKILTQMKADKVVRHVSTYNILMKIEANEHNVEGLIKVFGE 248

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+ +++P+ +S+  L   +    L   A   ++ +EK     N      L+ LY  +  
Sbjct: 249 MKRLEVEPNEVSFCILAIAHAVARLYTVAEAYVEAVEKSYTGDNWSTLDVLIILYGYLRK 308

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             ++ RIW  +  L   +    Y   I +  ++G+  +AE ++ E +S+ G       N 
Sbjct: 309 GKKLDRIWGTVKEL-PHVRSKSYILAIEAFGRIGQLGRAEELWLEMKSLKGLKSTEQFNS 367

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--- 411
           +L+ Y     ++ A   +  +   G KP   T+  L  G LK   +E+ L+  +  +   
Sbjct: 368 MLSIYCKCGLVKKATDIFREMDRNGCKPNAITFRHLALGCLKAELVEEALKTLEMGMDFT 427

Query: 412 --GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKA 468
               ++  +P      +      E+GD+  AE     L  A +   T +YN+L++ Y KA
Sbjct: 428 TSNKIKNSIPWLETTFSIVEIFAEKGDVANAEKFFEELHKAKYARYTFVYNTLIKAYVKA 487

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
                 ++ RM     + DAET  ++K+  + 
Sbjct: 488 KVYVPYLLRRMILGGARPDAETYSLIKLIEQF 519


>gi|302764000|ref|XP_002965421.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
 gi|300166235|gb|EFJ32841.1| hypothetical protein SELMODRAFT_406783 [Selaginella moellendorffii]
          Length = 584

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 208/469 (44%), Gaps = 48/469 (10%)

Query: 39  DTLGRRLLSLVYA---KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
           D L + LL+ ++A     S +  + KWKEEG  +    +  ++  L+   R  HALE+ E
Sbjct: 146 DKLEQELLARIFACKKDESMSSVLDKWKEEGKDLTVSMIVTVINRLKNSNRMAHALEMIE 205

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           W                   + ++ +G+++AE  FE L  + +     +ALL  YV    
Sbjct: 206 W-------------------ITARSKGIAAAEKLFEELSAEEKTRPVYNALLTRYVFLHN 246

Query: 156 SAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
             +AE L E+M + GFL + P   N M+ LY   G   K  +ML++ K     P++ TYN
Sbjct: 247 VKKAEGLFEEMDKAGFLSQSPFALNLMMKLYKHKGDNAKFQEMLEKAKDVAVEPNIFTYN 306

Query: 214 LWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
           + L   A   D E  EK F E+K      PD  SY TL   Y+K  L +KA  +L  ME 
Sbjct: 307 VMLDLKAKAGDVEGMEKIFEEMKLNPNAKPDGTSYFTLCKGYLKAGLTDKAEVSLLRMEV 366

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
              R+ +  +  ++  Y  +G   +V R+W+K   +     ++ +     ++   GE ++
Sbjct: 367 GPFRRTKATFEYMMLAYGQLGLISDVERMWQKCKMVPGDGFNS-FLAFQRAMALAGEVQR 425

Query: 333 AENIY---DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++++   D+W+        R  N+LLA Y    + E+ E    ++    ++     WE 
Sbjct: 426 VDSMFKHMDKWKRSKTVDLKRHNNLLLAYYKKGMKCEIKE-LEKKMNEMDLRVTLVDWE- 483

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE---EQGDIDGAEHLLVT 446
                      ++ ++  K A   VRK   D    TAA   LE   E+ D+  AE     
Sbjct: 484 -----------KEPIKMSKAAKAVVRK---DKEKETAARKGLEEAVEKADVKAAESAFEK 529

Query: 447 LRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            +        ++N LL+ Y  A       ++RM+ + V+ + ET  +LK
Sbjct: 530 CKAGNMAKVGVWNKLLKAYVNAQVPAYGFLQRMKAEGVEANEETHSLLK 578


>gi|449479004|ref|XP_004155478.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 259

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 8/211 (3%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           DTL RR+      + S    + +W EEG  V++ +L +++++LR   R+ HAL++CEW  
Sbjct: 36  DTLFRRVYRAGDPRTSIVRVLDQWVEEGRQVNQSDLQKLIKQLRTFGRFNHALQLCEWER 95

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
            + +     G  A+ L LISK RGL  AE +F ++ +  R      ALLH YV+NK   +
Sbjct: 96  NERNKCPSPGHIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKK 155

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           AEA+M+KM E GF+K PL YN MLNLY   G+ +K+ ++++E+++     +  TYN+ + 
Sbjct: 156 AEAIMQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMN 215

Query: 218 ACASQNDKETAEKAFLELKKTKIDP----DW 244
           A A+ +D    EK    L K + DP    DW
Sbjct: 216 AYAAASDITNMEKL---LSKMEADPLVATDW 243


>gi|242043362|ref|XP_002459552.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
 gi|241922929|gb|EER96073.1| hypothetical protein SORBIDRAFT_02g006520 [Sorghum bicolor]
          Length = 421

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 182/409 (44%), Gaps = 18/409 (4%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
           LRK + Y  AL+  EW++ +  +     DYA HLDL+++  G+ +AE + E +P+  R  
Sbjct: 6   LRKQRMYNKALKFMEWIDRRKLLNFEERDYASHLDLVARNHGIEAAEKYIERVPEAFRSE 65

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQML 198
                LL + V    + +AE +  ++ E          N ML LY  +S  ++  + +++
Sbjct: 66  VLYETLLVNCVCRDDAQKAEQVFNEIRELSLPLTVSACNQMLLLYKRVSRNKVVDILKLM 125

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           +   +N  P + TY L +      ND    E     +K+   +PD+   + +   YI  +
Sbjct: 126 E--NENIKPSLFTYKLMIDLKGRSNDTLGMESVLNLMKENGFEPDFGIQTMVAKFYISGD 183

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
           L EKA      ME      NR A  SLL LY  +G  D+V RIW   +    K+ D  + 
Sbjct: 184 LAEKAEEVTNAMEV-YVNANRHAIRSLLDLYAILGRPDDVERIWN--LCTEPKLED--FL 238

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
             I +  KLG  E+AE  +D     S     +  N +L  Y     L+  + F  R+   
Sbjct: 239 AAIKAWGKLGHIERAEETFDALVKTSPKLTSKYFNAMLYVYAENELLDKGKKFIERMSLD 298

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY----NKLEEQ 434
           G      TW+ +   Y+  G++ K  + F   + +V +  PD   +  +Y        E+
Sbjct: 299 GCPSSPLTWDAVVKLYVNSGELAKA-DSF---LANVTEDNPDRYPLFRSYVILLKAFAEK 354

Query: 435 GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKD 482
           GDI  AE +   L+   + +  + YN LL  YA A   P    ERM+ D
Sbjct: 355 GDIHNAEKIFNRLKQTSYPARTLPYNLLLAAYANAQVTPYGFRERMKAD 403


>gi|297835552|ref|XP_002885658.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331498|gb|EFH61917.1| hypothetical protein ARALYDRAFT_899047 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 737

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 172/353 (48%), Gaps = 16/353 (4%)

Query: 40  TLGRRLLSLVYAKRSAAITMRKWK---EEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           TL  R+ + +  K      + +W+   E+G  ++   +  +V  LR  +R + ALEV  W
Sbjct: 23  TLQSRIEAALEKKAEITTVLEQWRQQQEQGKQLNPSLVRGVVENLRDSQRCREALEVSNW 82

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M +Q    L+  D+     LI  + GL  A NF E++P+ +R     ++LL SYV+    
Sbjct: 83  MIVQKICNLIPEDFTTRFHLIENVFGLEEAGNFVESIPENLRNESIYNSLLSSYVRRNDL 142

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
            +AE+  +KM E G L    PYN M +LY  I +G   KV ++L+E+K+ N   D  T N
Sbjct: 143 DKAESTFKKMRELGLLLRASPYNSMTSLYRRIPHGNRCKVDEILREMKESNIKLDRDTVN 202

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L   A      T EK FL   +     DW++   +   Y++     KA    KEM +R
Sbjct: 203 NALRVYADVTHIATMEK-FLAEWEGNTPLDWLTRLDMAKAYLRSGFKGKA----KEMLRR 257

Query: 274 TCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
           T   ++  +Y  L+ LY   G + +V R+W     L  K N+  +  +I SL+KL +   
Sbjct: 258 TEELRDPKSYEELMRLYGEAGGRKDVYRVWDLYKKLSKKDNEG-FRALIGSLLKLDDING 316

Query: 333 AENI-YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT--KGIKP 382
           AE   Y EWE      D R+P +L+++Y  +  +E A+     ++   + +KP
Sbjct: 317 AEEFYYKEWECSGLPFDVRIPTMLVSSYREKGMVEKADKLIKEIMKNEESVKP 369



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 29/306 (9%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G+ V   EL  +++ L    ++  ALE  +WM  +    L   DYA  L +I  + G   
Sbjct: 381 GNVVKPSELRDLIKNLCDSNQFYKALEASKWMSTKTSFNLFPQDYAARLHMIENVLGFEE 440

Query: 126 AENFFE-NLPDKMRGPDTCSALLHSYVQNKKSAE-AEALMEKMSECGFLKCPLPYNHMLN 183
           AE FFE ++P+ M+       LL  Y ++ K+ + AEA+ EKM + GFL  P P+N M++
Sbjct: 441 AEKFFERSIPENMKDDYVYGTLLSCYAKSHKTLDKAEAIFEKMGDLGFLSKPSPFNSMIS 500

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           LY   G+ +KV  ++ ++K  N  PD +T N  L   A + D +T +K   E        
Sbjct: 501 LYSQLGKREKVENLISKMKCMNIEPDSLTMNNVLRMYADETDIKTMDKYKRE-------- 552

Query: 243 DWISYSTLTSLYIKMELP-----EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            WI+    T L ++  +      E+A   LK +E  T  KN V       L+    YK++
Sbjct: 553 -WINAEKNTKLEMRTMVAMANAYERAGLLLKAIEI-TRSKNEVH-----RLWNE--YKEK 603

Query: 298 VLRIWK----KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             R +K     +    + + D EY  VISSL+KL + + AE IY EWE      + R+P 
Sbjct: 604 EKRNYKIDDANLCKCRSAVGDEEYQSVISSLLKLDDLKGAEEIYGEWEPEGPEFNTRIPC 663

Query: 354 ILLAAY 359
           ++++ Y
Sbjct: 664 LIISRY 669


>gi|356503391|ref|XP_003520493.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g80270, mitochondrial-like [Glycine max]
          Length = 580

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 197/440 (44%), Gaps = 31/440 (7%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S  + + KW EEG+     EL R     RK K +  AL + EW+E + + + +  DYA  
Sbjct: 137 SLHLVLEKWLEEGN-----ELTRX----RKRKLFGRALLLSEWLESKKEFEFIERDYASR 187

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K+RGL  AE + E +P+          LL + V      +AE +  KM +     
Sbjct: 188 LDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDLPI 247

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
                N +L LY  N +      +L    +   P   +Y++ +       D    ++   
Sbjct: 248 TVFTCNELLFLYKRNDKKKIADLLLLMENEKIKPSRHSYSILIDTKGQSKDIGGMDQIVD 307

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K   I+PD  + + L   YI   L +K  T LK+ME    ++NR     LL LY N+G
Sbjct: 308 RMKAQGIEPDINTQAVLARHYISAGLQDKVETLLKQMEGENLKQNRWLCRILLPLYANLG 367

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCV--ISSLVKLGEFEKAENIYD----EWESISGTG 347
             DEV RIWK       + N     C+  I +  KL + ++AE +++    +W+  S T 
Sbjct: 368 KVDEVGRIWK-----VCETNPRYDECLGAIEAWGKLNKIDEAEKVFEMMVKKWKLSSKTC 422

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                +ILL  Y N   L   +    R+   G +    TW+ +   Y++ G++EK     
Sbjct: 423 -----SILLKVYANNEMLMKGKDLMKRIGDGGCRIGPLTWDTIVKLYVQTGEVEKADSVL 477

Query: 408 KKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRT 464
           +KA     ++     +  I   Y K   +GDI  +E + + ++ A + S  ++Y  L+  
Sbjct: 478 QKAAQQSQMKPMFSTYLTILEQYAK---RGDIHNSEKIFLRMKQADYTSKAKMYQVLMNA 534

Query: 465 YAKAGKMPLIIVERMQKDNV 484
           Y  A      I +R++ D++
Sbjct: 535 YINAKVPAYGIRDRLKADSI 554


>gi|296086986|emb|CBI33242.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 136/266 (51%), Gaps = 34/266 (12%)

Query: 37  GRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           G+ +L  ++  L     S    +  W + G+ V   EL RI+ +LRK KR+  ALE+ EW
Sbjct: 37  GKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRKRFSQALEISEW 96

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
           M  +        ++AV LDLI ++RG  SAE++F +L +  +   T  ALL+ YV+ +++
Sbjct: 97  MSKKGICAFSPTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTYGALLNCYVRQRQT 156

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216
            ++ + ++KM E GF   PL YN ++ LY + GQ +KVP            DV+T     
Sbjct: 157 DKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVP------------DVLT----- 199

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                            E+K++ + PD  SY    + Y      +     LKEME++   
Sbjct: 200 -----------------EMKQSNVYPDNFSYRICINSYGAQSDIQGMENVLKEMERQPHI 242

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIW 302
           ++ + Y+ L+SLY ++G K EVLR+W
Sbjct: 243 RDGLGYNHLISLYASLGNKAEVLRLW 268



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 62/249 (24%)

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y  L + Y++    +K+ + L++M++     + + Y+ ++ LYTN+G  ++V  +  +M
Sbjct: 142 TYGALLNCYVRQRQTDKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEM 201

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                  ++  Y   I+S     + +  EN+  E E        R P+I       R+ L
Sbjct: 202 KQSNVYPDNFSYRICINSYGAQSDIQGMENVLKEME--------RQPHI-------RDGL 246

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
                 YN L++           L  W       +EK +E F   +GS+R  +P +R   
Sbjct: 247 G-----YNHLISLYASLGNKAEVLRLWS------LEKNVEAF---VGSLRIVIPMNR--- 289

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQ 485
                                          +Y++L+    +AGK    ++  M+ D + 
Sbjct: 290 ------------------------------RMYHTLIMANIRAGKEVDGLLASMKADKIV 319

Query: 486 MDAETQKVL 494
            D ET+K+L
Sbjct: 320 EDEETKKIL 328


>gi|125599572|gb|EAZ39148.1| hypothetical protein OsJ_23575 [Oryza sativa Japonica Group]
          Length = 610

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 21/438 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW E+G+ + + +   ++  L+K   Y+ AL+  EWME    +     DYA HLDLI
Sbjct: 163 VLDKWIEDGNQLERNDAMLVLFHLKKQHMYRKALQFVEWMERGKLLNFEKRDYACHLDLI 222

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKCPL 176
           ++  G+ +A+ + + +P   R       L+ + V      +AE + +++ + C  L   L
Sbjct: 223 ARSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCLRLTVTL 282

Query: 177 PYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             N M+ LY  I+ G++  V  +++  K+N  P   TY L +      ND    E    E
Sbjct: 283 -CNQMILLYKRIAPGKVASVLMLME--KENVKPSAFTYRLLIDLKGRSNDLAGIEVVLNE 339

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNM 292
           +K   I+P   + + +   YI   L EKA   +KEME +    +  R    SLL LY  +
Sbjct: 340 MKAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAAL 399

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              ++V RIW+  M     + D  +   I +  +LG  EKAE  ++   +       +  
Sbjct: 400 NKPNDVARIWE--MCTEPMLED--FLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYY 455

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N +L  Y     L   + F  R+   G      TW+ L   Y+  G++EK  + F   + 
Sbjct: 456 NAMLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKA-DSF---LL 511

Query: 413 SVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           +V +  PD + +  +Y  L     ++GDI   E +   L+N G+    + Y  LL  Y  
Sbjct: 512 NVAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVN 571

Query: 468 AGKMPLIIVERMQKDNVQ 485
           A       +ERM+ DNV+
Sbjct: 572 AKVPAHGFLERMRGDNVR 589


>gi|125557709|gb|EAZ03245.1| hypothetical protein OsI_25393 [Oryza sativa Indica Group]
          Length = 610

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 21/438 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + KW E+G+ + + +   ++  L+K   Y+ AL+  EWME    +     DYA HLDLI
Sbjct: 163 VLDKWIEDGNQLERNDAMLVLFHLKKQHMYRKALQFVEWMERGKLLNFEKRDYACHLDLI 222

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKCPL 176
           ++  G+ +A+ + + +P   R       L+ + V      +AE + +++ + C  L   L
Sbjct: 223 ARSHGIETAQKYIKRVPLPFRNEVLYETLIVNCVLAGDIQKAEEVFKEIKDLCLRLTVTL 282

Query: 177 PYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             N M+ LY  I+ G++  V  +++  K+N  P   TY L +      ND    E    E
Sbjct: 283 -CNQMILLYKRIAPGKVASVLMLME--KENVKPSAFTYRLLIDLKGRSNDLAGIEVVINE 339

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNM 292
           +K   I+P   + + +   YI   L EKA   +KEME +    +  R    SLL LY  +
Sbjct: 340 MKAYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAAL 399

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              ++V RIW+  M     + D  +   I +  +LG  EKAE  ++   +       +  
Sbjct: 400 NKPNDVARIWE--MCTEPMLED--FLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYY 455

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N +L  Y     L   + F  R+   G      TW+ L   Y+  G++EK  + F   + 
Sbjct: 456 NAMLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKA-DSF---LL 511

Query: 413 SVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           +V +  PD + +  +Y  L     ++GDI   E +   L+N G+    + Y  LL  Y  
Sbjct: 512 NVAEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVN 571

Query: 468 AGKMPLIIVERMQKDNVQ 485
           A       +ERM+ DNV+
Sbjct: 572 AKVPAHGFLERMRGDNVR 589


>gi|414884017|tpg|DAA60031.1| TPA: hypothetical protein ZEAMMB73_016344 [Zea mays]
          Length = 703

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 199/431 (46%), Gaps = 24/431 (5%)

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
           W + G+ + + ++N ++  LRK + Y  AL+  EW+E +  +     DYA HLDLI++  
Sbjct: 269 WVKIGNRLERDKVNMVLFHLRKQRMYNKALKFVEWIERRKLLNFEERDYASHLDLIARNY 328

Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY--- 178
           G+ +A+ + E +P+  R       LL + V    + +AE +  ++ E   L  PL     
Sbjct: 329 GVEAAQKYIERVPEAFRSEVLYETLLVNCVCRDDAQKAEQVFNEIRE---LSLPLTISAC 385

Query: 179 NHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           N ML LY  +S  ++  +  +++  K+N    + TY L +      ND    E+    +K
Sbjct: 386 NQMLLLYKRVSRNKVVDILTLME--KENIKYSIFTYKLMIDLKVRSNDILGMEQVLNSMK 443

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  ++P++   + +   YI     EKA   +  ME    + NR A  SLL LY  +G   
Sbjct: 444 ENGLEPNFTIQTMVAKFYISGCFTEKAEEVINAMEVHV-KANRHAVRSLLDLYAILGRPV 502

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +V R+W    +L A+    ++   I +  KLG  E+AE I+D           +  N +L
Sbjct: 503 DVERVW----NLCAEPKLEDFLAAIKAWSKLGHIERAEEIFDVLVKTFPKLTSKYFNAML 558

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             Y     L+ ++ F  R+   G      TW+ +   Y+  G++ K  + F   + +V +
Sbjct: 559 EVYAENKLLDKSKKFIERMCLDGCTIGPLTWDAVVKLYVNLGELSKA-DSF---LMNVTE 614

Query: 417 WVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             PD   + ++Y  L     E+GDI  AE +   ++     +  + YN LL  YA A   
Sbjct: 615 DNPDRHPLFSSYVILLKAYAEKGDIHNAEKIFDRVKQTNFPARTLPYNLLLAAYASAQVT 674

Query: 472 PLIIVERMQKD 482
           P    ERM+ D
Sbjct: 675 PYGFRERMKAD 685


>gi|388512893|gb|AFK44508.1| unknown [Medicago truncatula]
          Length = 244

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 138/256 (53%), Gaps = 15/256 (5%)

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           MEL EKA   LK+ E R   +++V +  LLSLY ++G KDEV R+W    S+F  + +  
Sbjct: 1   MELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLG 60

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +ISSLV++ + E AE +Y+EW S+  + D R+ N+L++ Y+ + + +   SF+  + 
Sbjct: 61  YHAIISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMS 120

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQ 434
             G  P  TTWELL+ G++ + ++ + L C +KA      + W P    + A     +++
Sbjct: 121 EGGGCPNSTTWELLSEGHIAEKRVSEALSCLEKAFMTSDSKSWKPKPIKLAAFLKLCQDE 180

Query: 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQK-DNVQMDAETQKV 493
            D++ A+ L+  LR  G+ + E Y +L+     + +      ER+   D+  MD +  +V
Sbjct: 181 DDMESAKVLIELLRKPGYHNDEAYAALISKDEPSNR-----TERIDDVDSENMDDDDSQV 235

Query: 494 LKITSEMPVSEVSSIF 509
           L        S+V S F
Sbjct: 236 L-------FSQVDSSF 244


>gi|302789381|ref|XP_002976459.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
 gi|300156089|gb|EFJ22719.1| hypothetical protein SELMODRAFT_416459 [Selaginella moellendorffii]
          Length = 509

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 216/482 (44%), Gaps = 21/482 (4%)

Query: 31  EKKGAGGRDTLGRRLLSLVYAKRSAAI-TMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
           E  G G    L  RL+ L   + +  +  +++W  EG++V    L+R+VR LR  KRY  
Sbjct: 23  EAAGPGKCYQLEERLMDLERHQVNRVVPAIKQWIREGNSVTSCGLDRVVRRLRSRKRYLQ 82

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           AL   +W+  +  I     +    LDL S+   ++     F  LP + RG D    LL  
Sbjct: 83  ALMAVDWVANEKVIPFGYHETLQRLDLCSRCHHVTRTLLLFRRLPKQWRGEDAYCILLEM 142

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPD 208
           Y +     +AE  M+++   G +K   PY+ ML+ Y   G   +  +M+ E+K    + D
Sbjct: 143 YYKRDMLEDAEKTMQELRGIG-IKSLQPYHLMLSFYKLRGMEMRFERMVTEIKGSGLALD 201

Query: 209 VVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
              Y + LAA  S   D    E    E++   +  D +    +  +Y++  L  K+   L
Sbjct: 202 RSFYTILLAARDSFGGDMVAVEDVLAEMEGRGLKLDAVGCLAVAGIYLRSGLRHKSERVL 261

Query: 268 KEMEKRTCRKNRVAYSS-----LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           + +EK + +     YS+     +L+++  +G +D V RIW   +   A     ++   I 
Sbjct: 262 QRLEK-SLKSGEFKYSNSIRRRMLAMFGKLGDRDAVDRIWHS-IERSASTTVEDFIFGIE 319

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +  ++G+ ++AE++Y        + +PR+ N  LA  + +  +  A +   R+  KG++ 
Sbjct: 320 AFGRVGKMDEAEDMY--MRVGCNSCNPRLHNAFLAVLVEQGDVIRAVALVERM--KGVRC 375

Query: 383 CYT--TWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
             +  T+ LL   YLK G + +     E  + A G +    P    +          GD+
Sbjct: 376 LLSTVTYHLLIKVYLKAGDVSRATLAFESLRSAFGKLEWPRPSSETLAVMLEFFVGTGDV 435

Query: 438 DGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
             +E L+      G  +S  +++SL+R YAK G        RM    V+   ET+++L+ 
Sbjct: 436 QASERLVKKWMEDGFPLSAAVFHSLVRVYAKGGAGVDNFPGRMLSAGVEPTRETEQLLRQ 495

Query: 497 TS 498
            S
Sbjct: 496 IS 497


>gi|224072985|ref|XP_002303946.1| predicted protein [Populus trichocarpa]
 gi|222841378|gb|EEE78925.1| predicted protein [Populus trichocarpa]
          Length = 451

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 183/401 (45%), Gaps = 14/401 (3%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149
           +L+  EW+E          DYA HLD I+K+ GL  AE F E +P+  RG      LL S
Sbjct: 33  SLQFSEWLERSKQTDFTERDYACHLDCIAKVLGLWKAEKFIEKIPESFRGKLVYQTLLAS 92

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--KVPQMLQELK-KNTS 206
            V      +AE++  KM + G    P+       + I   +L+  K+P +L  +K +N  
Sbjct: 93  CVSVLNIKKAESVFRKMRDLGL---PITVEACEQMIIIYKRLEKKKIPNILLMMKDQNIK 149

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P  +TY L + A    ND    EK    ++   ++ D  + + +   YI + L +KA   
Sbjct: 150 PSFLTYKLLIDAKCQFNDTTGMEKLVEAMRNEGMELDVFALAVIARHYISVGLKDKADLI 209

Query: 267 LKEMEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
           LK++EKR  +   + A  SLLSLY ++G  DEV RIWK+     A    +E    I +  
Sbjct: 210 LKQIEKRKQKGGGLGARRSLLSLYASLGNADEVGRIWKECK---ADPKQSECIAAIRAWG 266

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           KLG+ E+AE + +                LL  YI+ N     +    ++   G      
Sbjct: 267 KLGKVEEAEAVSEMMLQTWKNPTFGYYTSLLNVYIDNNLTSKGKDLVEQMGDIGSWAGPL 326

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           TW+ L   Y+K G +EK      K +  +++  P +    A      ++GDI   E L  
Sbjct: 327 TWDALVRLYIKSGDVEKAHSILLK-VARMKRKRPLYTTCIAVMEHYAKRGDIHNTEKLFQ 385

Query: 446 TLRNAGHVST-EIYNSLLRTYAKAGKMPLI-IVERMQKDNV 484
           ++R  G+ +  + +  L+  Y  A K P+  +  RM+ DN+
Sbjct: 386 SMRELGYTARFKPFEILVDAYINA-KTPIYGLRARMKADNL 425


>gi|8778536|gb|AAF79544.1|AC022464_2 F22G5.3 [Arabidopsis thaliana]
          Length = 555

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 215/491 (43%), Gaps = 39/491 (7%)

Query: 44  RLLSLVYAKRSAAIT----MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC----- 94
           + LSL   K    +T    ++ W  +G  VH  ++   +  LRKL R K ALE+      
Sbjct: 66  KCLSLRIEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALEMSNLGML 125

Query: 95  ----------------EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR 138
                           EW+  +   +L   +Y+  L+   K+ G+S  E  F  +P + +
Sbjct: 126 LDRNEFLLMKILLNLMEWIIRERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQ 185

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
                + L+ + +       A   M+KM E G+    L YN ++    + G+   + + L
Sbjct: 186 NELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDL 245

Query: 199 QELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
             +K +  +P V TY++ +   A++++ +   KAF  +KK  ++P+ +SY  L   +   
Sbjct: 246 ALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVA 305

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            L   A    +E+EK     N      L+ LY  +G + E+ R W  ++  F  +    Y
Sbjct: 306 RLYTVAEAYTEEIEKSITGDNWSTLDILMILYGRLGKEKELARTW-NVIRGFHHVRSKSY 364

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
                +  ++G  ++AE ++ E +++ G  +    N LL+ Y     +E A   +  +  
Sbjct: 365 LLATEAFARVGNLDRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTG 424

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFK--------KAIGSVRKWVPDHRLITAAYN 429
            G KP   T+  L  G  K   M++ L+  +        K+IGS   W+     I   + 
Sbjct: 425 NGFKPNSITYRHLALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECF- 483

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDA 488
              E+GD++ +E L   ++NA +     +YN+L + Y KA      + +RM     + DA
Sbjct: 484 --AEKGDVENSEKLFEEVKNAKYNRYAFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDA 541

Query: 489 ETQKVLKITSE 499
           E+  +LK+  +
Sbjct: 542 ESYSLLKLVEQ 552


>gi|297834428|ref|XP_002885096.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330936|gb|EFH61355.1| hypothetical protein ARALYDRAFT_479008 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 605

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 199/458 (43%), Gaps = 18/458 (3%)

Query: 36  GGRDTLGR---RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALE 92
           GG+ T  R    L   + A +S    + KW +EG  + + E++  +  LRK K Y   L+
Sbjct: 130 GGKPTKKRAQSELYESIVAYKSVKHVLEKWVKEGKDLSQAEVSLAIFHLRKRKYYAMCLQ 189

Query: 93  VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152
           + EW+      +    +YA  LDL++K+  L  AENF +++P+  RG      LL + V 
Sbjct: 190 LWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAENFLKDIPESFRGEVVYRTLLANCVL 249

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212
                +AE L  KM E  F       N +L LY  + +      +L   ++N  P   TY
Sbjct: 250 KHHVNKAEDLFNKMKELKFPTSVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRGTY 309

Query: 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
              + +     D    EK    +K+  I+ D    +TL   YI+  L E+A   +KE+E 
Sbjct: 310 QFLINSKGLAGDITGMEKIVETMKEEGIEVDPELQATLAKYYIRAGLKERAQDLMKEIEG 369

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
           +  ++      SLL LY ++G  D V R     +S F   N   Y   IS++   G+ ++
Sbjct: 370 KGLQQTPWVCRSLLPLYADIGDSDNVRR-----LSTFVDQN-LRYDNCISAIRAWGKLKE 423

Query: 333 AENIYDEWESISGTGD--PRVPNI-LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E     +E +       P +P   L+  Y     L   +    R+   G+    +TW  
Sbjct: 424 VEEAEAVFERLVEKYKIFPMLPYFALMEIYTENKMLAKGKDLVKRMGNAGVTIGPSTWHA 483

Query: 390 LTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           L   Y+K G++ K      +A     +R     +  I   Y K   +GD+   E + + +
Sbjct: 484 LVKLYIKAGEVGKAELILNRATKDNKMRPMFISYMAILEEYAK---RGDVHNTEKVFMKM 540

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDNV 484
           + A + +  + Y ++L  Y KA      + ERM+ DNV
Sbjct: 541 KRASYAAQLMQYETVLLAYIKAKTPAYGMFERMKADNV 578


>gi|297829684|ref|XP_002882724.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328564|gb|EFH58983.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 518

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 165/332 (49%), Gaps = 39/332 (11%)

Query: 36  GGRDTLGRRLLSLVYAKRSAAITMRKWKEE----GHTVHKYELNRIVRELRKLKRYKHAL 91
           G   TL  R+ S    K +    + +W+++     H ++   +  IV +L   KRY+ AL
Sbjct: 36  GTNQTLLSRIESAADQKAAITTVLEEWRQQQKHGNHQLNPSLVKGIVEKLHDSKRYRQAL 95

Query: 92  EVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151
           EV  WM  +     +  D AV   LI  + GL  AE FF+++P+ ++G    ++LL SY 
Sbjct: 96  EVSNWMIEKKICNHLPEDLAVRFHLIENVLGLEEAEKFFQSIPENLKGESIYTSLLKSYA 155

Query: 152 QNKKSA--EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPD 208
           ++ + +  +AE   EKM + G L  P PYN M++LY S    +KV ++L+E+K+N    D
Sbjct: 156 KSGEISLRKAEYTFEKMRKLGMLLRPSPYNSMVSLYSSLRNRNKVDEILREMKENNLELD 215

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
             T N  L   A+  D  T +K FL         DW + +TL  L           TTL 
Sbjct: 216 SPTVNNALRVYAAVCDVATMDK-FL--------ADWNAITTLEWL-----------TTL- 254

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM K        AY  L+ LY   G +++V RIW    +   K N+  +  +I SL+KL 
Sbjct: 255 EMAK--------AY-RLIRLYGEAGEREDVYRIWDLYKNTKEKDNEG-FRALIGSLLKLD 304

Query: 329 EFEKAENI-YDEWESISGTGDPRVPNILLAAY 359
           +   AE I YDEWES     D R+P +L++ Y
Sbjct: 305 DINGAEKIYYDEWESSGLEFDLRIPTMLMSGY 336



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 67  HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSA 126
           + V   +L  +++ LR   +   ALE   WM  +    L   DYA+   LI K+ GL  A
Sbjct: 374 NQVKPSDLRDLIKNLRDSNQLSKALEASTWMCEKRGFNLFPEDYAIRFHLIEKVLGLEEA 433

Query: 127 ENFFE-NLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKCPLPYNHMLNL 184
           E FFE ++P  M+       LL SY ++ K+  +AE + EKM E GFL    P+N +++L
Sbjct: 434 EKFFESSIPKNMKDYSVYDTLLTSYTRSDKTLVKAEGVFEKMRELGFLSKLSPFNSIISL 493

Query: 185 YISNGQLDKVPQMLQELKKNT 205
           YI   +L KV ++L ++K+N 
Sbjct: 494 YIEQRKLSKVNKLLCDMKQNN 514


>gi|449437710|ref|XP_004136634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
 gi|449506005|ref|XP_004162626.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 606

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 192/438 (43%), Gaps = 15/438 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S +  + KW  EG+ +   +++  +  LR+ + +  AL+  EW+E    ++    DYA  
Sbjct: 151 SVSSALDKWVSEGNELSWDDISSTMMSLRRRRMFGKALQFSEWLEASGQLEFNENDYASR 210

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LDLI+K++GL  AE++   +P   +G      LL +YV      +AE +  KM +  F  
Sbjct: 211 LDLIAKVQGLHKAESYIAKIPKSFQGEVMYRTLLANYVAANNVNKAEEVFNKMKDLEFPM 270

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
               YN +L LY  N +      +L   K+N  P   TY + + A     D    E+   
Sbjct: 271 TTFAYNQVLVLYKRNDRRKIADVLLLMEKENVKPSPFTYKILIDAKGLSKDISGMEQVVD 330

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K   I+ D  +   L   Y+   L +KA  TLKEME+   + +R     LL LY  + 
Sbjct: 331 TMKAEGIELDVFALCLLAKHYVSCGLKDKAKATLKEMEEINSKGSRWPCRLLLPLYGELE 390

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
            +DEV R+W+      A  +  E    I +  KL    +AE I+D  + +      ++  
Sbjct: 391 MEDEVRRLWEICE---ANPHIEECMAAIVAWGKLKNIHEAEKIFD--KVVKTWPKKKIST 445

Query: 354 ----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
                ++  Y +   L   +   N++   G       W+ +   Y++ G++EK      K
Sbjct: 446 KHYCTMIKVYGDCKMLTKGKELVNQMAESGYSIDPLAWDAVVKLYVEAGEVEKADTFLVK 505

Query: 410 AIG--SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYA 466
           A+    +R     +R +   Y +   +GD+  AE +   +R +G+      + +L++ Y 
Sbjct: 506 AVKKYEMRPLYCSYRTLMNHYAR---RGDVHNAEKIFYKMRQSGYGPWFNQFETLIQAYV 562

Query: 467 KAGKMPLIIVERMQKDNV 484
            +      + ERM  D +
Sbjct: 563 NSKTPAYGMRERMMADKL 580


>gi|449506011|ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 613

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 192/453 (42%), Gaps = 6/453 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + KW  EG  + + +++  +  LRK + Y  AL+  EW+E    +  V  DYA  LDLI 
Sbjct: 164 LDKWVSEGKELSRDDISSAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKDYASRLDLIG 223

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL  AEN+   +P   +G      LL + V      +AE +  KM +  F       
Sbjct: 224 KLRGLRMAENYIAKIPKSFQGEVVYRTLLANCVIACNVQKAEEVFNKMKDLEFPITAFAC 283

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N +L LY    +      +L   K+N  P   TY + +      ND    E+    +K  
Sbjct: 284 NQLLLLYKRTDKRKVADILLLMEKENVKPSRFTYRILIDTKGLSNDITGMEQVVDTMKAE 343

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I+ D  + S L   YI   L +KA   LKEME+     +R     LL LY  +  +DEV
Sbjct: 344 GIELDVSTLSVLAKHYISGGLKDKAKAILKEMEEINSEGSRWPCRILLPLYGELQMEDEV 403

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            R+W+   S     +  E    I +  KL   ++AE I+D           R  + +L  
Sbjct: 404 RRLWEICGS---NPHIEECMAAIVAWGKLKNIQEAEKIFDRVVKTGEKLSARHYSTMLNV 460

Query: 359 YINRNQ-LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
           Y   ++ L   +    ++   G +    T + +   Y++ G++EK      K +   +K 
Sbjct: 461 YREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAGEVEKADSFLVKTVLQYKK- 519

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLIIV 476
            P         ++   +GD+  AE +   +R  G+V     + +L++ Y  A      + 
Sbjct: 520 KPMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGRLSQFQTLIQAYVNAKAPAYGMR 579

Query: 477 ERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           ERM+ D+V  +      L     + + EVS + 
Sbjct: 580 ERMKADSVFPNKALAGKLAQVDSLKMREVSDLL 612


>gi|302801578|ref|XP_002982545.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
 gi|300149644|gb|EFJ16298.1| hypothetical protein SELMODRAFT_421999 [Selaginella moellendorffii]
          Length = 1138

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 204/442 (46%), Gaps = 20/442 (4%)

Query: 69   VHKYELNRIVRELRKLKRYKHALEVCEWMELQYD--IKLVSGDYAVHLDLISKIRGLSSA 126
            V K+E   ++R LRK KR KHALE+ +WM L       L + D    +DL S+   +  A
Sbjct: 693  VGKHEFVYVMRRLRKRKRVKHALEIADWMALSRPRPFTLTTKDNIFRMDLASRCGSVGKA 752

Query: 127  ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            E  FE L  + R     +ALL SY + KK   AE L +++   G +      N + ++Y 
Sbjct: 753  ERIFERLAPEHRSEVAYNALLLSYTKKKKRGRAERLFKELKATGTISSCYSLNLLASMYR 812

Query: 187  SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
              G   +V  + +E +K     D+  YNL L A       E  EK +  +   +    + 
Sbjct: 813  QLGLDAEVLMLAKEAQKLGVELDMCFYNLLLPAKFRVQGLEEVEKLYATITSPRDRTRFF 872

Query: 246  SYSTLTSLYIKMELPEKAATTL----KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
            +   + ++Y+     +K    L    + ME  T  K R  Y+ L+S+Y ++     V R 
Sbjct: 873  TCLAMANIYVSAGRNDKVLEMLELIDQGMEAGTIVKQRRRYNVLISMYASLEDGARVERT 932

Query: 302  WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-PRVPNILLAAYI 360
            W+++     + N  +Y C+I +  KLG   +AE I+   E+   +     V N ++  Y 
Sbjct: 933  WERLKQQ-RQPNTEDYCCIIRAWGKLGHVVRAETIFQVAEANEKSLKYSTVFNAMMFVYS 991

Query: 361  NRNQLEMAESFYNRLVTK-GIK--P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSV-- 414
                 E AE    R+  + G+K  P CY    LL   Y K G + K+L   + A      
Sbjct: 992  VAGMREEAEGLVQRMEYELGVKLDPWCYHHLVLL---YAKAGDIGKMLSTLRAAQAGGKK 1048

Query: 415  -RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMP 472
             R++ P    + AA N L + GD+D AE  L   + +G+ V+T +YN LLR +  A +  
Sbjct: 1049 ERRFTPLAATLWAALNTLADAGDVDTAEETLTRWKRSGYRVTTGLYNRLLRAHLVAARPT 1108

Query: 473  LIIVERMQKDNVQMDAETQKVL 494
               VERM  D V  + ET+K+ 
Sbjct: 1109 ERFVERMLVDGVVPNGETEKLF 1130



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 203/460 (44%), Gaps = 28/460 (6%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +++W+EEG+ + K  L  I+ +LRK KR   ALEV +WM           D  + +D+  
Sbjct: 98  LKEWEEEGNVLDKEMLRAIMLKLRKWKRGSLALEVADWMYYTKQFPQDLDDVILRMDMAV 157

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           + + +  A+  F+ L    +  D  + +   + Q K    A+    K  E       + +
Sbjct: 158 RAKKIRRAQKIFKKLQAWEKTTDAYNTMFLIFSQRKMILHADDFYYKFKEAKLKPNDITF 217

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           + +  LY   G  +KV ++ ++++     P V   N  + +    +   +AE+ F +L  
Sbjct: 218 SILACLYRRCGLHNKVVRLQEDIEAAGMKPCVCFLNNLMVSKYELHGISSAEEIFNQLVP 277

Query: 238 TKID---PDWISYSTLTSLYIKMELPEKAATTL----KEMEKRTCRKNRVAYSSLLSLYT 290
              D       +YS + + Y+   + +KA   L    K M++ +  K R  Y  L+S+Y+
Sbjct: 278 AGSDLKRSHLSTYSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHILISMYS 337

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            M  +D + R+WKK+  L A+    +Y  +I S  +  E   AE  + E +       P 
Sbjct: 338 TMKNRDGMERVWKKIEDLKAQ----DYVAMIESCGRADEVGSAEKYFKEADRKGLLNQPS 393

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           +   LL  Y  + Q + AE  + ++  + +      +  +    L    +++ +E  + A
Sbjct: 394 LFAALLGVYAGKGQADKAEKLFKKMKEQDVSRDALCYHYIILANLNAKNIDRAVEILELA 453

Query: 411 ------IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLL 462
                  G  R ++     +     K  E GD+  AE LL   R  G   T+I  YN LL
Sbjct: 454 EAAGMRDGRSRPFLGTFCDVLKTIAK--ETGDVALAETLLADWRK-GKYRTDIAVYNHLL 510

Query: 463 RTYAKAGKM---PLIIVERMQKDNVQMDAETQKVLKITSE 499
           R Y KAGK    P +  +R+  +N++   ET ++L+  S+
Sbjct: 511 RVYLKAGKQVQGPFL--KRLAGNNMKPTRETHQLLQQLSD 548


>gi|297800434|ref|XP_002868101.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313937|gb|EFH44360.1| hypothetical protein ARALYDRAFT_915040 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 495

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 159/314 (50%), Gaps = 28/314 (8%)

Query: 51  AKRSAAIT--MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           + ++A IT  +  W+++GH V   +L   ++ LR   ++  ALE  EWM  Q    +V  
Sbjct: 45  SNQNAHITPMLASWQKQGHQVKPSDLRGFIKNLRGSNQFSKALEASEWMGEQKVFDIVPE 104

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE-AEALMEKMS 167
           DY+  L L+  + GL  AE FF+++P  M      + LL SY +++ + + AEA  EKM 
Sbjct: 105 DYSARLHLVENVLGLEEAEKFFKSIPKNMTDYFVYATLLSSYTKSENTLDKAEATFEKMR 164

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
           E GFL  P P+N M++LY    +LD V ++++E+++     D  T N  L   A     +
Sbjct: 165 ELGFLLKPSPFNSMISLYGQLQKLDMVEKLVREMQETKVECDSPTVNNVLRVYA-----D 219

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           T +   +E  KT +D             IK+E       T+  M K   R   +  +  +
Sbjct: 220 TCKIKAMETFKTWVDEQG----------IKLE-----GGTIVAMAKAYLRSGSIEKA--I 262

Query: 287 SLYTNM-GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
            +Y N+ G + EV R+W +      K+ND  Y  V+SSL+KL   + AE IY+EW+    
Sbjct: 263 EMYGNVAGSEKEVYRLWDEYKKE-TKVNDNGYRTVLSSLLKLDNVQGAEKIYEEWKPEGP 321

Query: 346 TGDPRVPNILLAAY 359
             D  +P++LL+ Y
Sbjct: 322 KLDMSIPSLLLSRY 335


>gi|302801860|ref|XP_002982686.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
 gi|300149785|gb|EFJ16439.1| hypothetical protein SELMODRAFT_53462 [Selaginella moellendorffii]
          Length = 463

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 199/442 (45%), Gaps = 10/442 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + +W  EG   H  E+   ++ L+ L R+K A E+ +W+  +  ++L    +  HL+L  
Sbjct: 26  LHQWIAEGRESHG-EIIAAMKRLKWLGRFKQAYEISDWVIKERSLELQKFHFINHLELTG 84

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           ++  +++A+NF      ++      +   +  +YV +   ++A  +++ M E   L    
Sbjct: 85  RVVNMNAAKNFLLTKMPRVYAKSEAALITMFENYVIHSLLSKARLVLKLMKEKNLLTTAT 144

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            +N + +LY +  + D +P +L+E++    SP+V TYN+ +   A + D E  E+ F ++
Sbjct: 145 AFNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAKKGDTEGMERLFSKM 204

Query: 236 K-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMG 293
           K      P+     TL S Y+     EKA   LKE +     R++R  +  +++LY  MG
Sbjct: 205 KCDGDGTPNGEILCTLASGYVNAGDHEKAMAYLKEAVASDEFRESRRVHDKVIALYAAMG 264

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D + RIW +    F  ++   Y   I++  K+G  ++AE ++ E         P    
Sbjct: 265 RADMIDRIW-RFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAELTEKRTLLRPAHYV 323

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L  AY    ++  AE    R+          ++  L  GY+K G  +   E   +    
Sbjct: 324 PLFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSGNPKMAAETLTRMFEE 383

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMP 472
             +  P    +     +  +  D++ AE L   +R   +  +   YNSLL  Y  AGK  
Sbjct: 384 --RVPPCFDTVMLILKEHAKNADVNSAELLFQDMRRESYNKNVAAYNSLLEAYVNAGKHA 441

Query: 473 LIIVERMQKDNVQMDAETQKVL 494
              ++RM  D V  +A T ++L
Sbjct: 442 YRFLQRMATDKVAPNARTFELL 463


>gi|302798913|ref|XP_002981216.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
 gi|300151270|gb|EFJ17917.1| hypothetical protein SELMODRAFT_53460 [Selaginella moellendorffii]
          Length = 463

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 198/442 (44%), Gaps = 10/442 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + +W  EG   H  E+   ++ L+ L R+K A E+ +W+  +  ++L    +  HLDL  
Sbjct: 26  LHQWIAEGRESHG-EIIAAMKRLKWLGRFKQAYEISDWVIKERSLELQKFHFINHLDLTG 84

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           ++  +++A+NF      ++      +   +  +YV +   ++A  +++ M E   L    
Sbjct: 85  RVVNMNAAKNFLLTKMPRVYAKSEAALITMFENYVIHSLLSKARLVLKLMKEKNLLTTAT 144

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            +N + +LY +  + D +P +L+E++    SP+V TYN+ +   A + D E  E+ F ++
Sbjct: 145 AFNKLFHLYANKKKEDGIPVILREMRDMRISPNVETYNILIGIKAKKGDTEGMERLFSKM 204

Query: 236 K-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMG 293
           K      P+     TL S Y+     EKA   LKE +     +++R  +  +++LY  MG
Sbjct: 205 KCDGDGTPNCEILCTLASGYVNAGDHEKAMAYLKEAVASEEFQESRRVHDKVIALYAAMG 264

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D + RIW +    F  ++   Y   I++  K+G  ++AE ++ E         P    
Sbjct: 265 RADMIDRIW-RFTRRFPVVSANSYVATIAAYEKVGRIDRAEKVFAELTEKRTLLRPAHYV 323

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L  AY    ++  AE    R+          ++  L  GY+K G  +   E   +    
Sbjct: 324 PLFRAYCEGGEMGKAEKLLERIRHGNGHINNLSYHHLVAGYMKSGNPKMAAETLNRMFEE 383

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMP 472
             +  P    +     +  +  D+  AE L   +R   +  +   YNSLL  Y  AGK  
Sbjct: 384 --RVPPCFDTVMLILKEHAKNADVSSAELLFQDMRRESYNKNVAAYNSLLEAYVNAGKHA 441

Query: 473 LIIVERMQKDNVQMDAETQKVL 494
              ++RM  D V  +A T ++L
Sbjct: 442 YRFLQRMATDKVAPNARTFELL 463


>gi|22165078|gb|AAM93695.1| putative leaf protein [Oryza sativa Japonica Group]
          Length = 372

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 176/402 (43%), Gaps = 70/402 (17%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM  +  + L  GD A  L+LI+K+ GL  A  +F+++PD++                  
Sbjct: 33  WMTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQL------------------ 74

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
                    K  +C        Y  +L  Y     ++K  ++ ++++         YN+ 
Sbjct: 75  ---------KQQQC--------YGSLLKCYAEANCVEKAEELFEKMRGMGMASSYAYNVM 117

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +         E        ++++ I PD  +  TL ++                      
Sbjct: 118 MRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAVL--------------------- 156

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKA 333
           RK +    +L++ Y        V    K + ++  K N  ++ Y C I  L+K+ +   A
Sbjct: 157 RKKK----TLVAAYV-------VAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGA 205

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           E  Y+EWES     D R+ N+L+ AY     ++ AE+  ++ + KG  P   T   L  G
Sbjct: 206 EKAYEEWESKHVYHDSRLINLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGG 265

Query: 394 YLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
           Y K GQ+ K  +  KKA+ S   +W+PD   +  + N   EQ +++ AE ++  L+    
Sbjct: 266 YFKVGQVSKAADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQRLVT 325

Query: 453 VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            + +IY+ LL+TY  AGK    ++ RM+KD ++ D ET+K+L
Sbjct: 326 PTRDIYHGLLKTYVNAGKPVSDLLHRMKKDGMEADEETEKIL 367


>gi|449457725|ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 112/194 (57%), Gaps = 1/194 (0%)

Query: 38  RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
           +D L RR+  +     S    + +W  EG  V + EL  I++ELR  KR+KHALE+ +WM
Sbjct: 28  KDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWM 87

Query: 98  ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
             +    L + D A+ ++LI ++ GL   E++F+N+P +++      ALL+ Y   K   
Sbjct: 88  SDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVD 147

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           +A A M+K+ E GF   PLPYN M+NLY   G+ +++  +L+E+K +    D  TY++ +
Sbjct: 148 KANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRI 207

Query: 217 AACASQNDKETAEK 230
           +A A+ +D    EK
Sbjct: 208 SAYAAASDFRGIEK 221


>gi|302805546|ref|XP_002984524.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
 gi|300147912|gb|EFJ14574.1| hypothetical protein SELMODRAFT_423640 [Selaginella moellendorffii]
          Length = 547

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 233/496 (46%), Gaps = 47/496 (9%)

Query: 41  LGRRLLSLVYAKRSAAITM-RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           L RR+  L + +    + +  +W  EG+ + +Y L  +  +LR+ KR+ HAL + +W  +
Sbjct: 60  LARRISRLKWCQDHLVVPIVEEWMAEGNEITRYGLIIVRHKLRRRKRFHHALRISDW--I 117

Query: 100 QYDIKLVSGDYAV---HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
            Y  +++  D+     H+DL+S++  ++ A   F+NLP   +  +  + LL  YV++  +
Sbjct: 118 AYKKRVIPYDHKEALNHIDLVSRV-SVTRAREMFDNLPADWKSREGYTVLLSMYVRHSMA 176

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
           A+AE++   +   G L+   P N ML LY  +    KV +++++ ++   S ++ ++N+ 
Sbjct: 177 ADAESIYTTLKRWG-LRSISPINMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNIL 235

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK--R 273
           L            E + +E+ ++K   D  +Y  L S Y +  + +KA   L  +E    
Sbjct: 236 LPMTFRAGGVAEME-SLVEMMESKNFLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGME 294

Query: 274 TCRKNRV--AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGE 329
           T + NR+   Y+ ++ +Y  +G  + V RIW     + ++M+    +Y C+I S  K+G 
Sbjct: 295 TGKFNRLRRTYNVIIVIYGFIGDVEGVKRIW----DITSRMDPTAEDYICMIRSSAKVGL 350

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           FE+AE+ +    +        V N++L      N +  AES   ++   G KP   T+  
Sbjct: 351 FEQAESGFLALAA-QRKMHITVCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHH 409

Query: 390 LTWGYLKKGQMEKVLECFK----------------------KAIGSVRKWVPDHRLITAA 427
           L   +LK   +++ L+ F+                      +    ++ WV   R++  A
Sbjct: 410 LIAIHLKNDNIQRALDLFQLERQVFRVPFELSPQERKFMSTEPRKDIKPWVGTCRMMMLA 469

Query: 428 YNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 486
              L E+G++   E L    R         ++N+LLR Y  A +     +ER++ D V+ 
Sbjct: 470 ---LAERGEVVACETLFRNWRLEKWKTDVRLFNALLRAYEVAREPVAGFMERLEADGVEA 526

Query: 487 DAETQKVLKITSEMPV 502
           D ET  +L    E P+
Sbjct: 527 DEETIGILSRLPERPL 542


>gi|302782563|ref|XP_002973055.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
 gi|300159656|gb|EFJ26276.1| hypothetical protein SELMODRAFT_413483 [Selaginella moellendorffii]
          Length = 547

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 232/496 (46%), Gaps = 47/496 (9%)

Query: 41  LGRRLLSLVYAKRSAAITM-RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL 99
           L RR+  L + +    + +  +W  EG+ + +Y L  +  +LR+ KR+ HAL + +W  +
Sbjct: 60  LARRISRLKWCQDHMVVPIVEEWMAEGNEITRYGLIIVRHKLRRRKRFHHALRISDW--I 117

Query: 100 QYDIKLVSGDYAV---HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
            Y  +++  D+     H+DL+S++  ++ A   F+NLP   +  +  + LL  YV++  +
Sbjct: 118 AYKKRVIPYDHKEALNHIDLVSRV-SVTRAREMFDNLPADWKSREAYTVLLSMYVRHSMA 176

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
           A+AE++   +   G L+   P N ML LY  +    KV +++++ ++   S ++ ++N+ 
Sbjct: 177 ADAESIYTTLKRWG-LRSISPINMMLTLYQKHQVFWKVAELIRDAEEAGQSLNMCSFNIL 235

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK--R 273
           L            E + +E+ ++K   D  +Y  L S Y +  + +KA   L  +E    
Sbjct: 236 LPMTFRAGGVAEME-SLVEMMESKNFLDEHTYCMLASSYGRAGMVDKAKEMLMVVEDGME 294

Query: 274 TCRKNRV--AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGE 329
           T + NR+   Y+ ++ +Y  +G  + V RIW     + ++M+    +Y C+I S  K+G 
Sbjct: 295 TGKFNRLRRTYNVIIVIYGFIGDVEGVKRIW----DITSRMDPTAEDYICMIRSSAKVGL 350

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           FE AE+ +    +        V N++L      N +  AES   ++   G KP   T+  
Sbjct: 351 FELAESGFLALAA-QRKMHITVCNVMLQVCQAGNFVLRAESLLRKIHQMGFKPDPATYHH 409

Query: 390 LTWGYLKKGQMEKVLECFK----------------------KAIGSVRKWVPDHRLITAA 427
           L   +LK   +++ L+ F+                      +    ++ WV   R++  A
Sbjct: 410 LIAIHLKNDNIQRALDLFQLERQVFRVPFELSPQERKFMSTEPRKDIKPWVGTCRMVMLA 469

Query: 428 YNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 486
              L E+G++   E L    R         ++N+LLR Y  A +     +ER++ D V+ 
Sbjct: 470 ---LAERGEVVACETLFRNWRLEKWKTDVRLFNALLRAYEVAREPVAGFMERLEADGVEA 526

Query: 487 DAETQKVLKITSEMPV 502
           D ET  +L    E P+
Sbjct: 527 DEETIAILSRLPERPL 542


>gi|78708864|gb|ABB47839.1| expressed protein [Oryza sativa Japonica Group]
 gi|215701127|dbj|BAG92551.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 341

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 176/402 (43%), Gaps = 70/402 (17%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM  +  + L  GD A  L+LI+K+ GL  A  +F+++PD++                  
Sbjct: 2   WMTERLHLHLSPGDVANRLELITKVYGLDRAVEYFDSMPDQL------------------ 43

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
                    K  +C        Y  +L  Y     ++K  ++ ++++         YN+ 
Sbjct: 44  ---------KQQQC--------YGSLLKCYAEANCVEKAEELFEKMRGMGMASSYAYNVM 86

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +         E        ++++ I PD  +  TL ++                      
Sbjct: 87  MRLYLQNGQVERVHSMHQAMEESGIVPDVSTTHTLVAV---------------------L 125

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKA 333
           RK +    +L++ Y        V    K + ++  K N  ++ Y C I  L+K+ +   A
Sbjct: 126 RKKK----TLVAAYV-------VAEDIKAIENVLEKANSCNSMYMCRIGVLLKMNDMVGA 174

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           E  Y+EWES     D R+ N+L+ AY     ++ AE+  ++ + KG  P   T   L  G
Sbjct: 175 EKAYEEWESKHVYHDSRLINLLVDAYCKEGLMDKAEALVDQFIKKGRMPFANTCYKLAGG 234

Query: 394 YLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
           Y K GQ+ K  +  KKA+ S   +W+PD   +  + N   EQ +++ AE ++  L+    
Sbjct: 235 YFKVGQVSKAADLTKKALASASNEWIPDLTNVLMSLNYFAEQKNVEAAEEMMSLLQRLVT 294

Query: 453 VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
            + +IY+ LL+TY  AGK    ++ RM+KD ++ D ET+K+L
Sbjct: 295 PTRDIYHGLLKTYVNAGKPVSDLLHRMKKDGMEADEETEKIL 336


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 196/409 (47%), Gaps = 19/409 (4%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           EL  I++ L +  ++  ALEV  WM    + +      AV L ++ +   L++    F++
Sbjct: 48  ELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKS 107

Query: 133 LPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           L ++    D    ++L+ +  +N+K  EA    E+M E G     + YN +++LY   G+
Sbjct: 108 LREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167

Query: 191 -LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
             + + ++ +E+K +   PD  TYN  + ACAS +  E A + F ++K +   PD ++Y+
Sbjct: 168 SWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYN 227

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L  +Y K     +AA  LKEME   C  N V Y+ LLS +   G  +    +   M+S 
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSK 287

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI-NRNQLEM 367
             + +   YT ++S+  + G+ E+A  IY++  + + T +    N L+  +  N+N  EM
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEM 347

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPD---HR 422
              F + +   G++P   TW  L   + K G   +VL+ F+  K  G    + PD     
Sbjct: 348 MVIFED-MQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAG----FEPDKATFN 402

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGK 470
           ++  AY +    G  D A  +   +  AG       +N+LL   A+ G+
Sbjct: 403 ILIEAYGRC---GSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGR 448



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 192/456 (42%), Gaps = 49/456 (10%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLI 117
            +  +EEG+ +  Y    ++  L + +++K AL   E M E      LV+  Y V +DL 
Sbjct: 105 FKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVT--YNVIIDLY 162

Query: 118 SK-IRGLSSAENFFENLPDKMRGPD----------------------------------- 141
            K  R   +    FE +  +   PD                                   
Sbjct: 163 GKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPD 222

Query: 142 --TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
             T +ALL  Y +     EA  ++++M   G L   + YN +L+ +   G  +   +M  
Sbjct: 223 RVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKD 282

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +  K   PDV TY   L+A +     E A + + +++ +   P+  +++ L  ++ K +
Sbjct: 283 SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNK 342

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +     ++M+      + V ++SLL  +   G   EVL++++ M     + + A + 
Sbjct: 343 NFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFN 402

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I +  + G  ++A +IYD       T D    N LLAA     + E AE   + L   
Sbjct: 403 ILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRS 462

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGD- 436
             KP    +  +   Y   G++EK+    K+ + ++   +VP  +++   +  +  +   
Sbjct: 463 SYKPNDIAYASMLHAYANGGELEKL----KEMVDTLHTIYVPFTKILLKTFVLVYSKCSL 518

Query: 437 IDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKM 471
           +D AE   + +R+ G++S T  +N+++  Y K G M
Sbjct: 519 VDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMM 554



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 153/360 (42%), Gaps = 12/360 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+  + +NK  +E   + E M  CG     + +N +L  +  NG   +V ++ + +
Sbjct: 330 TFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGM 389

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           KK    PD  T+N+ + A       + A   +  + +    PD  +++TL +   +    
Sbjct: 390 KKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRW 449

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   L E+ + + + N +AY+S+L  Y N G  +++  +   + +++           
Sbjct: 450 EHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTF 509

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    K    ++AE+ +          D    N +++ Y  +  ++ A   +  L + G+
Sbjct: 510 VLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGL 569

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDI 437
           +P   T+  L   Y ++G   K     ++ + + +   PD   +  +  +Y+K    G +
Sbjct: 570 EPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQ--TPDLVSYNTVIFSYSK---HGQL 624

Query: 438 DGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
             A  +   + + G    +  YN+ +  Y   G  P  L +V+ M K   + D  T + L
Sbjct: 625 SSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTL 684



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL +  +  +   AE ++++++   +    + Y  ML+ Y + G+L+K+ +M
Sbjct: 431 PDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEM 490

Query: 198 LQELKKNTSPD----VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           +  L     P     + T+ L  + C+  ++   AE AFL ++      D  +++ + S+
Sbjct: 491 VDTLHTIYVPFTKILLKTFVLVYSKCSLVDE---AEDAFLAMRHHGYLSDTSTFNAMISM 547

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y K  + +KA  T   +       + V Y+ L+ +Y   G   +     ++ M+     +
Sbjct: 548 YGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPD 607

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  VI S  K G+   A  I+ E  S     D    N  +  Y+N      A S   
Sbjct: 608 LVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVK 667

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            +   G KP   T+  L   Y K G+ E+V    K    S      D     AAY ++  
Sbjct: 668 HMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSS------DPNFSKAAYRRIAA 721

Query: 434 QGD 436
           + D
Sbjct: 722 RVD 724


>gi|22331104|ref|NP_188178.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273796|sp|Q9LRP6.1|PP234_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g15590, mitochondrial; Flags: Precursor
 gi|11994226|dbj|BAB01348.1| DNA-binding protein [Arabidopsis thaliana]
 gi|20856658|gb|AAM26678.1| AT3g15590/MQD17_5 [Arabidopsis thaliana]
 gi|27363266|gb|AAO11552.1| At3g15590/MQD17_5 [Arabidopsis thaliana]
 gi|332642175|gb|AEE75696.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 610

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 195/456 (42%), Gaps = 14/456 (3%)

Query: 36  GGRDTLGR---RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALE 92
           GG+ T  R    L   + A +S    + KW +EG  + + E+   +  LRK K Y   L+
Sbjct: 135 GGKPTKKRGQSELYESIVAYKSVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQ 194

Query: 93  VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152
           + EW+      +    +YA  LDL++K+  L  AE F +++P+  RG      LL + V 
Sbjct: 195 LWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVL 254

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212
                +AE +  KM E  F       N +L LY  + +      +L   ++N  P   TY
Sbjct: 255 KHHVNKAEDIFNKMKELKFPTSVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATY 314

Query: 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
           +  + +     D    EK    +K+  I+ D    S L   YI+  L E+A   +KE+E 
Sbjct: 315 HFLINSKGLAGDITGMEKIVETIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEG 374

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
           +  ++      SLL LY ++G  D V R     +S F   N   Y   IS++   G+ ++
Sbjct: 375 KGLQQTPWVCRSLLPLYADIGDSDNVRR-----LSRFVDQN-PRYDNCISAIKAWGKLKE 428

Query: 333 AENIYDEWESISGTGD--PRVPNI-LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E     +E +       P +P   L+  Y     L        R+   GI    +TW  
Sbjct: 429 VEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHA 488

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           L   Y+K G++ K      +A     K  P      A   +  ++GD+   E + + ++ 
Sbjct: 489 LVKLYIKAGEVGKAELILNRATKD-NKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKR 547

Query: 450 AGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDNV 484
           A + +  + Y ++L  Y  A      ++ERM+ DNV
Sbjct: 548 ASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNV 583


>gi|302798621|ref|XP_002981070.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
 gi|300151124|gb|EFJ17771.1| hypothetical protein SELMODRAFT_444770 [Selaginella moellendorffii]
          Length = 1138

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 203/443 (45%), Gaps = 22/443 (4%)

Query: 69   VHKYELNRIVRELRKLKRYKHALEVCEWMELQYD--IKLVSGDYAVHLDLISKIRGLSSA 126
            V K+E   ++R LRK KR KHALE+ +WM L       L + D    +DL S+   +  A
Sbjct: 693  VGKHEFVYVMRRLRKRKRVKHALEIADWMALSRPRPFTLTTKDNIFRMDLASRCGSVGKA 752

Query: 127  ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            E  FE L  + R     +ALL SY + KK   AE L +++   G +      N + ++Y 
Sbjct: 753  ERIFERLAPEHRSEVAYNALLLSYTKKKKRGRAERLFKELKATGTISSCYSLNLLASMY- 811

Query: 187  SNGQLDKVPQML--QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
               +LD    ML  +  K     D+  YNL L A       E  EK +  +   +    +
Sbjct: 812  RQLRLDAEVLMLAKEAQKLGVELDMCFYNLLLPAKFRVQGLEDVEKLYATITSPRDRTRF 871

Query: 245  ISYSTLTSLYIKMELPEKAATTL----KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             +   + ++Y+     +K    L    + ME  T  K R  Y+ L+S+Y ++     V R
Sbjct: 872  FTCLAMANIYVSAGRNDKVLEMLELIDQGMEAGTIVKQRRRYNVLISMYASLEDGARVER 931

Query: 301  IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-PRVPNILLAAY 359
             W+++     + N  +Y C+I +  KLG   +AE I+   E+   +     V N ++  Y
Sbjct: 932  TWERLKQQ-RQPNTEDYCCIIRAWGKLGHVVRAETIFQVAEANEKSLKYSTVFNAMMFVY 990

Query: 360  INRNQLEMAESFYNRLVTK-GIK--P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSV- 414
                  E AE    R+  + G+K  P CY    LL   Y K G + K+L   + A     
Sbjct: 991  SVAGMREEAEGLVRRMEYELGVKLDPWCYHHLVLL---YAKAGDIGKMLSTLRAAQACGK 1047

Query: 415  --RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKM 471
              R++ P    + AA N L + GD+D AE  L   + +G+ V+T +YN LLR +  A + 
Sbjct: 1048 KERRFTPLAATLWAALNTLADAGDVDTAEETLTRWKRSGYRVTTGLYNRLLRAHLVAARP 1107

Query: 472  PLIIVERMQKDNVQMDAETQKVL 494
                VERM  D V  + ET+K+ 
Sbjct: 1108 TERFVERMLADGVVPNGETEKLF 1130



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 203/458 (44%), Gaps = 24/458 (5%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +++W+EEG+ + K  L  I+ +LRK KR   ALEV +WM           D  + +D+  
Sbjct: 98  LKEWEEEGNVLDKEMLRAIMLKLRKWKRGSLALEVADWMYYTKQFPQDLDDVILRMDMAV 157

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           + + +  A+  F+ L    +  D  + +   + Q K    A+    K  E       + +
Sbjct: 158 RAKKIRRAQKIFKKLQAWEKTTDAYNTMFLIFSQRKMILHADDFYYKFKEAKLKPNDITF 217

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           + +  LY   G  +KV ++ ++++     P V   N  + +    +   +AE+ F +L  
Sbjct: 218 SILACLYRRCGLHNKVVRLQEDIEAAGMKPCVCFLNNLMVSKYELHGISSAEEIFNQLVP 277

Query: 238 TKID---PDWISYSTLTSLYIKMELPEKAATTL----KEMEKRTCRKNRVAYSSLLSLYT 290
              D       +YS + + Y+   + +KA   L    K M++ +  K R  Y  L+S+Y+
Sbjct: 278 AGSDLKRSHLSTYSMMAASYLSAGMHDKAQNLLEVIEKAMDQGSFPKLRRTYHILISMYS 337

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            M  +D + R+WKK+  L A+    +Y  +I S  +  E   AE  + E +       P 
Sbjct: 338 TMKNRDGMERVWKKIEDLKAQ----DYVAMIESCGRADEVGSAEKYFKEADRKGLLNQPS 393

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           +   LL  Y  + Q + AE  + ++  + +      +  +    L    +++ +E  + A
Sbjct: 394 LFAALLGVYAGKGQADKAEKLFKKMKEQDVSRDALCYHYIILANLNARNIDRAVEILELA 453

Query: 411 IGSVRKWVPDHRLITAAYNKLE----EQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRT 464
             +  +       +    + L+    E GD+  AE LL   R  G   T+I  YN LLR 
Sbjct: 454 EAAGMRDGRSRPFLGTFCDVLKTIARETGDVALAETLLADWRK-GKYRTDIAVYNHLLRV 512

Query: 465 YAKAGKM---PLIIVERMQKDNVQMDAETQKVLKITSE 499
           Y KAGK    P +  +R+  +N++   ET ++L+  S+
Sbjct: 513 YLKAGKQVQGPFL--KRLAGNNMKPTRETHQLLQQLSD 548


>gi|125602283|gb|EAZ41608.1| hypothetical protein OsJ_26140 [Oryza sativa Japonica Group]
          Length = 524

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 214/460 (46%), Gaps = 22/460 (4%)

Query: 52  KRSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           +RSA++   +R W  +G  VH+  +   V  LR+ + ++ AL+V EW+  +   KL   D
Sbjct: 59  ERSASVCAAIRGWMGDGRAVHRGHVFHAVNRLRRRRLHRAALQVMEWIMRERPYKLSELD 118

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC 169
           Y+  L+  +K+ G+S AE+ F  +P + +     + L+ + +       A     KM E 
Sbjct: 119 YSYLLEFTAKVHGISEAESLFLRIPQEYQNELLYNNLVMACLDLGLIKLAYGYKRKMREL 178

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETA 228
                P  YN ++ L+ S G+   + ++L ++K +  +P   TYN+ L   A++++ +  
Sbjct: 179 SLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANEHNIDGV 238

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            + F ++K+ K++P+ I+Y  L   +    L   + T ++ +E      N      LL L
Sbjct: 239 ARVFNDMKRAKVEPNEITYGILAIAHAVARLYTVSHTYVEAIENSMTGTNWSTLEILLIL 298

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           Y   G   E+   W  M  L   +    +   I +  K+G  ++AE I+ ++ES   T  
Sbjct: 299 YGYHGKAKELKMTWDLMQGL-PHIRPKSFILAIEAFGKVGSIDQAEEIWGKFES---TRK 354

Query: 349 PRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           P++    N +L+ Y     ++ A + +  +   G +P   T+  LT G LK G +++ L+
Sbjct: 355 PKLTEQFNSILSVYCRHGLVDKASAVFKEMRANGCQPNAITYRHLTLGCLKAGIVKEALK 414

Query: 406 CFKKA--------IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STE 456
               A        + S   W+    +I  ++    E GD+  A+ +   L  + +  ++ 
Sbjct: 415 TMDIAKKEVVTKKVKSSTPWLETTHMILESF---AENGDLVNAKRVFDELNESKYCRNSF 471

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
           +YN+LL+ + KA      ++  M       DAET  +L I
Sbjct: 472 VYNTLLKAHVKAKVYEPDLLRAMILRGAMPDAETYSLLGI 511


>gi|449437712|ref|XP_004136635.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 189/453 (41%), Gaps = 6/453 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + KW  EG  + + +++  +  LRK + Y  AL+  EW+E    +  V  DYA  LDLI 
Sbjct: 156 LDKWVSEGKELSRDDISSAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKDYASRLDLIG 215

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           K+RGL  AEN+   +P   +G      LL + V      +AE +  KM    F       
Sbjct: 216 KLRGLRMAENYIAKIPKSFQGEVVYQTLLVNCVIASNVHKAEKVFNKMKNLEFPITAFAC 275

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N +L LY    +      +L   K+N      TY + +      ND    E+    +K  
Sbjct: 276 NQLLLLYKRTDKRKIADVLLLMKKENVKYSTSTYRILIDVNGLSNDITGMEEVVDSMKAE 335

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I  D  + S L   Y+   L +KA   LKEME+     +R     LL LY  +  +DEV
Sbjct: 336 GIKLDVETLSRLVKHYVSGGLKDKAKAILKEMEEINSEGSRWPCRILLPLYGELQMEDEV 395

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            R+W+   S     +  E    I +  KL   ++AE I+D           R  + +L  
Sbjct: 396 RRLWEICGS---NPHIEECMAAIVAWGKLKNIQEAEKIFDRVVKTGEKLSARHYSTMLNV 452

Query: 359 YINRNQ-LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
           Y   ++ L   +    ++   G +    T + +   Y++ G++EK      K +   +K 
Sbjct: 453 YREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAGEVEKADSFLVKTVLQYKK- 511

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLIIV 476
            P         ++   +GD+  AE +   +R  G+V     + +L++ Y  A      + 
Sbjct: 512 KPMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGRLSQFQTLIQAYVNAKAPAYGMR 571

Query: 477 ERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
           ERM+ D+V  +      L     + + EVS + 
Sbjct: 572 ERMKADSVFPNKALAGKLAQVDSLKMREVSDLL 604


>gi|224125312|ref|XP_002329774.1| predicted protein [Populus trichocarpa]
 gi|222870836|gb|EEF07967.1| predicted protein [Populus trichocarpa]
          Length = 310

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 150/339 (44%), Gaps = 58/339 (17%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +P K++G    +ALL+ Y + K   +A A  +K+++ G ++ PL +N ++ LY       
Sbjct: 22  IPQKLKGFMVYTALLNCYAREKDVEKAVATFKKLTDIGVMRSPLVFNILMYLYF------ 75

Query: 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
                                        Q D E                DW +Y     
Sbjct: 76  -----------------------------QTDGEVV-------------GDWNTYCVAAD 93

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +K  + E A T LK++E +   K + +A+ +LL LY   G KDE+ RIWK       K
Sbjct: 94  RCLKAGIMEMAMTMLKKLEGQITEKTKSIAFDTLLKLYARKGNKDELYRIWKSDEKR-DK 152

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           + +  Y  +ISSL+ L + E AE ++ +WES   +   RVPNIL+ AY   N LE A S 
Sbjct: 153 IYNKGYMSMISSLLMLDDIEAAEMMFKKWESRGLSYYFRVPNILINAYCRNNLLEKAGSL 212

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            +  + KG +P    W  L  GYL+       +E  KKAI     W P    + +  + L
Sbjct: 213 IDHAMMKGSEPSADAWYSLASGYLE-------VEAMKKAILVCPGWKPIKETLASCLDHL 265

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           E +GD + AE  +  LR     S   +N  LRTY K  K
Sbjct: 266 EGKGDQNKAEEFIELLRTENIFSPVAHNR-LRTYIKGLK 303


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 204/431 (47%), Gaps = 15/431 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           E N+++  + K+ +++  + + E M+   + +D+      Y++ ++   +   LS A   
Sbjct: 85  EFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYT----YSIFINCFCRRSQLSLALAV 140

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      PD  T S+LL+ Y  +K+ ++A AL+++M E G+      +  +++ L++
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + Q +++   PD+VTY   +     + D + A     +++K KI+ D + 
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+T+     K +  + A     EM+ +  R +   YSSL+S   N G   +  R+   M+
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A+  +  +++K   P   T+  L  G+ K  ++E+ +E F++   S R  V +    T 
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYTT 438

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 483
             +   +  D D A+ +   + + G H +   YN LL    K GK+   +++ E +Q+  
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498

Query: 484 VQMDAETQKVL 494
           ++ D  T  ++
Sbjct: 499 MEPDIYTYNIM 509



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++    + K   +A  L  +M   G       Y+ +++   + G+     ++L ++ +
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE 321

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +P+VVT++  + A   +     AEK + E+ K  IDPD  +YS+L + +   +  ++
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  + C  N V YS+L+  +      +E + ++++M       N   YT +I 
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              +  + + A+ ++ +  S+    +    NILL       +L  A   +  L    ++P
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ ++  G  K G++E   E F     S++   P+        +    +G  + A+ 
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNL--SLKGVSPNVIAYNTMISGFCRKGSKEEADS 559

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           LL  ++  G + ++  YN+L+R   + G
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDG 587



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 100/287 (34%), Gaps = 37/287 (12%)

Query: 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           D V      +K    P +V +N  L+A A  N  E       +++   I  D  +YS   
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----------------MGYK 295
           + + +      A   L +M K     + V  SSLL+ Y +                MGYK
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185

Query: 296 DEVLRIWKKMMSLFAKMNDAE-------------------YTCVISSLVKLGEFEKAENI 336
            +       +  LF     +E                   Y  V++ L K G+ + A ++
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             + E      D  + N ++        ++ A + +  +  KGI+P   T+  L      
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 305

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            G+           I   RK  P+    +A  +   ++G +  AE L
Sbjct: 306 YGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEKL 350


>gi|449506007|ref|XP_004162627.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 192/438 (43%), Gaps = 17/438 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           S A  + KW  +G+ + + +++  +  LR+ + ++ AL+  EW+E    ++    DYA  
Sbjct: 157 SVASALVKWVSQGNKLSRDDISSTMISLRRRQMFRKALQFSEWLEANGQLEFNERDYASR 216

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           + LI+K++GL  AE++   +P   +G     ALL +YV      +AE +  K+ +  F  
Sbjct: 217 VHLIAKVQGLHKAESYIAKIPKSFQGEVVHRALLANYVVANNVEKAEEVFNKIKDLEFPM 276

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
               YN ML LY    +      +L   K+N  P   TY + +      ND    E+   
Sbjct: 277 SIFAYNQMLVLYKKIDRRKIADVLLLMEKENIKPCPFTYKILIDGKGLSNDISGMEQVVD 336

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K   I+ D  + S L   Y+   L  KA   LKE+E+      +     LL  Y  + 
Sbjct: 337 SMKAEGIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEETNSNGPQWLCRILLPFYGKLQ 396

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----WESISGTGDP 349
            +DEV R+W+      A  +  E    I +  +L   ++AE I+D     W+ +S     
Sbjct: 397 MEDEVRRLWEICE---ANPHIEECMAAIVAWGQLKNVQEAEKIFDRVVKTWKKLSA---- 449

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           R  +I++  Y +   L   +   N++   G      T   +   Y++ G++EK      K
Sbjct: 450 RHYSIMMNVYRDSKMLTKGKEVVNQMAESGCHIDLLTCNAIVKLYVEAGEVEKADSFLVK 509

Query: 410 AIG--SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYA 466
           A+    ++     ++ +   Y +   +GD+  AE +   +R + ++     + +L++ Y 
Sbjct: 510 AVKKYGMKPLFTSYKTLMDHYAR---RGDVHNAEKIFDKMRQSSYIPRLGQFGTLIQAYV 566

Query: 467 KAGKMPLIIVERMQKDNV 484
            A      + ERM  D V
Sbjct: 567 NAKTPAYGMRERMMADKV 584


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 205/432 (47%), Gaps = 17/432 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           E N+++  + K+K++   + + E M+   + YD+      Y + ++   +   L  A   
Sbjct: 82  EFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLY----SYNILINCFCRRSQLPLALAV 137

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      PD  T S+LL+ Y  +K+ ++A AL+++M E G+    + +N +++ L++
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + Q +++   PD+VTY   +     + D + A     +++K KI+ D + 
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+T+     K +  + A     +ME +  R +   Y+SL+S   N G   +  R+   M+
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A+  +  +++K   P   T+  L  G+ K  ++E+ +E F++   S R  V +      
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYNT 435

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKD 482
               L + GD D A+ +   + + G V  +I  Y+ LL    K GK+   L++ E +QK 
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 483 NVQMDAETQKVL 494
            ++ D  T  ++
Sbjct: 495 KMEPDIYTYNIM 506



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 155/354 (43%), Gaps = 17/354 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K + +  A   F  +  K   PD  T ++L+       + ++A  L+  M 
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E       + ++ +++ ++  G+L +  ++  E+ K++  PD+ TY+  +      +  +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+  F  +      P+ ++Y+TL   + K +  E+     +EM +R    N V Y++L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D   +I+KKM+S     +   Y+ ++  L K G+ EKA  +++  +     
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++       ++E     +  L  KG+KP    +  +  G+ +KG  E+    
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557

Query: 407 FK--KAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVS 454
           F+  K  G+    +PD    +  YN L       GD   +  L+  +R+ G V 
Sbjct: 558 FREMKEDGT----LPD----SGCYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 43/304 (14%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLE 234
           L  N +LNL     +LD    +  E+ ++   P +V +N  L+A A     +        
Sbjct: 51  LSRNALLNL-----KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGER 105

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN--- 291
           ++  +I  D  SY+ L + + +      A   L +M K     + V  SSLL+ Y +   
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKR 165

Query: 292 -------------MGYKDEVLRIWKKMMSLFAKMNDAE-------------------YTC 319
                        MGYK + +     +  LF     +E                   Y  
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           V++ L K G+ + A ++  + E      D  + N ++        ++ A + +N++ TKG
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I+P   T+  L       G+           I   RK  P+    +A  +   ++G +  
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE--RKINPNVVTFSALIDAFVKEGKLVE 343

Query: 440 AEHL 443
           AE L
Sbjct: 344 AEKL 347


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 199/424 (46%), Gaps = 15/424 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG--DYAVHLDLISKIRGLSSAENFF 130
           E N+++  + K+K++   + + E M+    +++V G   Y + ++   +   +S A    
Sbjct: 49  EFNKLLSAIAKMKKFDVVISLGEKMQ---RLEIVHGLYTYNILINCFCRRSQISLALALL 105

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYIS 187
             +      P   T S+LL+ Y   K+ ++A AL+++M E G+    + +  +++ L++ 
Sbjct: 106 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 165

Query: 188 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           N   + V  + + +++   P++VTY + +     + D + A     +++  KI+ D + +
Sbjct: 166 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 225

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +T+     K    + A    KEME +  R N V YSSL+S   + G   +  ++   M+ 
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N   +  +I + VK G+F +AE +YD+    S   D    N L+  +   ++L+ 
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 345

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A+  +  +V+K   P   T+  L  G+ K  ++E   E F++   S R  V D    T  
Sbjct: 346 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTL 403

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDN 483
              L   GD D A+ +   + + G V  +I  Y+ LL      GK+   L + + MQK  
Sbjct: 404 IQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 484 VQMD 487
           +++D
Sbjct: 463 IKLD 466



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 132/299 (44%), Gaps = 3/299 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K R +  A N F+ +  K   P+  T S+L+       + ++A  L+  M E   
Sbjct: 229 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 288

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + +N +++ ++  G+  +  ++  ++ K++  PD+ TYN  +      +  + A++
Sbjct: 289 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 348

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F  +      PD ++Y+TL   + K +  E      +EM  R    + V Y++L+    
Sbjct: 349 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 408

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G  D   +++K+M+S     +   Y+ ++  L   G+ EKA  ++D  +      D  
Sbjct: 409 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 468

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +   ++       +++     +  L  KG+KP   T+  +  G   K  +++     KK
Sbjct: 469 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 527



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  FE +  K   PD  T + L+  + ++K+  +   L  +MS  G +   + Y  
Sbjct: 343 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 402

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++     +G  D   ++ +++      PD++TY++ L    +    E A + F  ++K++
Sbjct: 403 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  D   Y+T+     K    +        +  +  + N V Y++++S   +     E  
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 522

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNIL 355
            + KKM       N   Y  +I + ++ G+   +  +  E  S    GD      V N+L
Sbjct: 523 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 582

Query: 356 LAAYINRNQLEM 367
               ++++ L+M
Sbjct: 583 HDGRLDKSFLDM 594


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 199/424 (46%), Gaps = 15/424 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG--DYAVHLDLISKIRGLSSAENFF 130
           E N+++  + K+K++   + + E M+    +++V G   Y + ++   +   +S A    
Sbjct: 87  EFNKLLSAIAKMKKFDVVISLGEKMQ---RLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYIS 187
             +      P   T S+LL+ Y   K+ ++A AL+++M E G+    + +  +++ L++ 
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 188 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           N   + V  + + +++   P++VTY + +     + D + A     +++  KI+ D + +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +T+     K    + A    KEME +  R N V YSSL+S   + G   +  ++   M+ 
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N   +  +I + VK G+F +AE +YD+    S   D    N L+  +   ++L+ 
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A+  +  +V+K   P   T+  L  G+ K  ++E   E F++   S R  V D    T  
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTL 441

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDN 483
              L   GD D A+ +   + + G V  +I  Y+ LL      GK+   L + + MQK  
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 484 VQMD 487
           +++D
Sbjct: 501 IKLD 504



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 132/299 (44%), Gaps = 3/299 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K R +  A N F+ +  K   P+  T S+L+       + ++A  L+  M E   
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + +N +++ ++  G+  +  ++  ++ K++  PD+ TYN  +      +  + A++
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F  +      PD ++Y+TL   + K +  E      +EM  R    + V Y++L+    
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G  D   +++K+M+S     +   Y+ ++  L   G+ EKA  ++D  +      D  
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +   ++       +++     +  L  KG+KP   T+  +  G   K  +++     KK
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  FE +  K   PD  T + L+  + ++K+  +   L  +MS  G +   + Y  
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++     +G  D   ++ +++      PD++TY++ L    +    E A + F  ++K++
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  D   Y+T+     K    +        +  +  + N V Y++++S   +     E  
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNIL 355
            + KKM       N   Y  +I + ++ G+   +  +  E  S    GD      V N+L
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620

Query: 356 LAAYINRNQLEM 367
               ++++ L+M
Sbjct: 621 HDGRLDKSFLDM 632


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 187/401 (46%), Gaps = 11/401 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDY-AVHLDLISKIRGLSSAENFFENLP 134
           I++ L    ++  AL + +++  + D + L++G   AV + ++ K   +S A +   NL 
Sbjct: 112 IIKGLGFNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLE 171

Query: 135 DKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL- 191
                 D    ++L+ +Y  NKK  +A  +  KM E G     + YN +LN+Y   G   
Sbjct: 172 ADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPW 231

Query: 192 DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            K+  ++Q++K    +PD+ TYN  ++ C + +  E A   F E+K     PD ++Y+ L
Sbjct: 232 AKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNAL 291

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
             +Y K   P++A   LK+ME  + R + V Y+SL+S Y   G  ++ L + +KM+    
Sbjct: 292 LDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGI 351

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
           K +   YT ++S  V  G+ E A  +++E   +    +    N L+  Y +R + E    
Sbjct: 352 KPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVK 411

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            +  +      P   TW  L   + + G   +V   F++   S  ++ P+        + 
Sbjct: 412 VFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRS--RFAPERDTFNTLISA 469

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
               G  D A      +  AG VS ++  YN++L T A+ G
Sbjct: 470 YGRCGSFDQAMAAYKRMLEAG-VSPDLSTYNAVLATLARGG 509



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 181/399 (45%), Gaps = 11/399 (2%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++   R    Y+ AL++ E +++    +  +  Y   LD+  K R    A    + + 
Sbjct: 254 NTLISCCRAGSLYEEALDLFEEIKVA-GFRPDAVTYNALLDVYGKSRRPKEAMEVLKQME 312

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P   T ++L+ +YV+     +A  L  KM + G       Y  +L+ +++ G+ +
Sbjct: 313 SNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEE 372

Query: 193 KVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++ +E++K    P++ T+N  +     +   E   K F E+K  K  PD ++++TL 
Sbjct: 373 LAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLL 432

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +++ +  +  + +   +EM++      R  +++L+S Y   G  D+ +  +K+M+     
Sbjct: 433 AVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVS 492

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            + + Y  V+++L + G +E++E +  E +      +    + LL AY N  ++E   + 
Sbjct: 493 PDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNAL 552

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYN 429
              + +  IK   T   LL    L   +++ ++E  ++A    RK    PD     A  +
Sbjct: 553 AEEIYSGTIK---THAVLLKTLVLVNSKVDLLVET-ERAFLEFRKRGISPDVTTSNAMLS 608

Query: 430 KLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
               +  +  A  +L  +  +G  +S   YNSL+  Y++
Sbjct: 609 IYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSR 647



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 3/212 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           SK+  L   E  F     +   PD  T +A+L  Y + K   +A  ++  M E G     
Sbjct: 576 SKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSL 635

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++ +Y       K  Q+ +E L K   PDV++YN+ + A    +  + A++   E
Sbjct: 636 TSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEE 695

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K     PD ++Y+T  + Y    +  +A   ++ M K+ C+ N   Y+S++  Y  +  
Sbjct: 696 MKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKL 755

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           +DE     + +  L  ++++ E + ++  + K
Sbjct: 756 RDEACSFVQNLGDLDPQISEDEKSRLLERIAK 787



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 124/264 (46%), Gaps = 11/264 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +     ++E ++ +M + G     + Y+ +L+ Y +  +++++  +
Sbjct: 493 PDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNAL 552

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDK-----ETAEKAFLELKKTKIDPDWISYSTLTS 252
            +E+   T   + T+ + L      N K     ET E+AFLE +K  I PD  + + + S
Sbjct: 553 AEEIYSGT---IKTHAVLLKTLVLVNSKVDLLVET-ERAFLEFRKRGISPDVTTSNAMLS 608

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           +Y + ++  KA   L  M +     +  +Y+SL+ +Y+      +  +I+++++    + 
Sbjct: 609 IYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEP 668

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  VI +  +    ++A+ I +E +  +   D    N  +AAY   +    A    
Sbjct: 669 DVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVI 728

Query: 373 NRLVTKGIKPCYTTWELLTWGYLK 396
             ++ +G KP + T+  +   Y K
Sbjct: 729 RYMIKQGCKPNHNTYNSIVDWYCK 752



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ML++Y     + K  ++L  + +   +  + +YN  +   +   +   +E+ F E+  
Sbjct: 604 NAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILD 663

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I+PD ISY+ +   Y + ++ ++A   ++EM+      + V Y++ ++ Y       E
Sbjct: 664 KGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVE 723

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            + + + M+    K N   Y  ++    KL
Sbjct: 724 AIDVIRYMIKQGCKPNHNTYNSIVDWYCKL 753


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 192/445 (43%), Gaps = 11/445 (2%)

Query: 34  GAGGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
           G  G + L   LL   Y +    R      R  K +G  V     N ++  L K+     
Sbjct: 282 GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 341

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALL 147
           A E+ + + ++  +++      + ++ + K + + + ++F  ++ +K   PD  T + L+
Sbjct: 342 AWEIYQEV-VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 400

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTS 206
           ++Y +     EA  LM+ MS  G   C   YN ++N     G+  +   +L E LK   S
Sbjct: 401 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 460

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD  TYN+ L  C   ++   AE+ F E+    + PD +S+S L  L  K    ++A   
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            ++M+      + V Y+ L+  +   G   E L++  +M+     ++   Y  +++ L K
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCK 580

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
                +A+ ++ E        D      L+  Y     +  A + +  ++ + +KP   T
Sbjct: 581 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVT 640

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G+ K  +MEKV E +   I   R+  P+H       N     G +  A  L   
Sbjct: 641 YNTLIDGFCKGSEMEKVNELWNDMIS--RRIYPNHISYGILINGYCNMGCVSEAFRLWDE 698

Query: 447 LRNAGHVSTEIY-NSLLRTYAKAGK 470
           +   G  +T I  N++++ Y +AG 
Sbjct: 699 MVEKGFEATIITCNTIVKGYCRAGN 723



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 5/334 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           ++  + L+SK   L  A  +F ++ +    PD    + L+  + +N   +EA  + ++M 
Sbjct: 501 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 560

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G     + YN +LN       L +  ++  E+ ++   PD  T+   +       +  
Sbjct: 561 EQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMN 620

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  + +  + PD ++Y+TL   + K    EK      +M  R    N ++Y  L+
Sbjct: 621 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y NMG   E  R+W +M+    +        ++    + G   KA+            
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  +I    ++ A +  N++   G+ P   T+ ++  G+ ++G+M++    
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             K I   R   PD    T+  N    Q ++  A
Sbjct: 801 MLKMIE--RGVNPDRSTYTSLINGHVTQNNLKEA 832



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 128/297 (43%), Gaps = 22/297 (7%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM-------------------SECGFL 172
           N P+      + SA++H  V++++  +A+A++ +M                     CG  
Sbjct: 228 NCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCG-- 285

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKA 231
             PL ++ ++  Y+   +L +  +  + LK K     +   N  L         + A + 
Sbjct: 286 SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEI 345

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           + E+ ++ +  +  + + + +   K +  E   + L +ME++    + V Y++L++ Y  
Sbjct: 346 YQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCR 405

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +E   +   M     K     Y  +I+ L K G++ +A+ + DE   I  + D   
Sbjct: 406 QGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTAT 465

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            NILL      + +  AE  ++ + ++G+ P   ++  L     K G +++ L+ F+
Sbjct: 466 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 522



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 38/268 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K + LS A+  F  + ++   PD  T + L++ Y ++    +A  L E M 
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-----AACAS 221
           +       + YN +++ +    +++KV ++  ++  +   P+ ++Y + +       C S
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690

Query: 222 QNDK---ETAEKAFLELKKT---------------------------KIDPDWISYSTLT 251
           +  +   E  EK F     T                            I PD I+Y+TL 
Sbjct: 691 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 750

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + +IK E  ++A   + +ME      + + Y+ +L+ ++  G   E   I  KM+     
Sbjct: 751 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 810

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDE 339
            + + YT +I+  V     ++A  ++DE
Sbjct: 811 PDRSTYTSLINGHVTQNNLKEAFRVHDE 838



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ ++  Y +   + +A+  +  M   G +   + YN ++N +I    +D+   ++ ++
Sbjct: 710 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 769

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   PDV+TYN+ L   + Q   + AE   L++ +  ++PD  +Y++L + ++     
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 829

Query: 261 EKAATTLKEMEKR 273
           ++A     EM +R
Sbjct: 830 KEAFRVHDEMLQR 842



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           L++ Y      +EA  L ++M E GF    +  N ++  Y   G   K  + L   L K 
Sbjct: 679 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 738

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD +TYN  +     + + + A     +++ + + PD I+Y+ + + + +    ++A 
Sbjct: 739 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 798

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
             + +M +R    +R  Y+SL++ +       E  R+  +M+
Sbjct: 799 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 840



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A+ F  N+  K   PD  T + L++ +++ +    A AL+ KM   G L   + YN +LN
Sbjct: 727 ADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 786

Query: 184 LYISNGQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            +   G++ +    ML+ +++  +PD  TY   +    +QN+ + A +   E+ +    P
Sbjct: 787 GFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846

Query: 243 D 243
           D
Sbjct: 847 D 847



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 109/279 (39%), Gaps = 41/279 (14%)

Query: 246 SYSTLTSLYIK-MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           S+S +  + ++   LP+  A  L+ + K    +  +  S +L+ Y N G    V  +  +
Sbjct: 238 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLT-YGNCGSNPLVFDLLVR 296

Query: 305 MMSLFAKMND---------AEYTCV--------ISSLVKLGEFEKAENIYDEWESISGTG 347
                 K+ +         ++  CV        +  LVK+G  + A  IY E        
Sbjct: 297 TYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 356

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +    NI++ A     ++E  +SF + +  KG+ P   T+  L   Y ++G +E+  E  
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 416

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA 466
               G   K  P      A  N L + G    A+ +L  +   G    T  YN LL    
Sbjct: 417 DSMSGKGLK--PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL---- 470

Query: 467 KAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEV 505
                    VE  + DN+ MDAE     +I  EMP   V
Sbjct: 471 ---------VECCRNDNM-MDAE-----RIFDEMPSQGV 494


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 192/445 (43%), Gaps = 11/445 (2%)

Query: 34  GAGGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
           G  G + L   LL   Y +    R      R  K +G  V     N ++  L K+     
Sbjct: 21  GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 80

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALL 147
           A E+ + + ++  +++      + ++ + K + + + ++F  ++ +K   PD  T + L+
Sbjct: 81  AWEIYQEV-VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTS 206
           ++Y +     EA  LM+ MS  G   C   YN ++N     G+  +   +L E LK   S
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD  TYN+ L  C   ++   AE+ F E+    + PD +S+S L  L  K    ++A   
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            ++M+      + V Y+ L+  +   G   E L++  +M+     ++   Y  +++ L K
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
                +A+ ++ E        D      L+  Y     +  A + +  ++ + +KP   T
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G+ K  +MEKV E +   I   R+  P+H       N     G +  A  L   
Sbjct: 380 YNTLIDGFCKGSEMEKVNELWNDMIS--RRIYPNHISYGILINGYCNMGCVSEAFRLWDE 437

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAGK 470
           +   G  +T I  N++++ Y +AG 
Sbjct: 438 MVEKGFEATIITCNTIVKGYCRAGN 462



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 139/331 (41%), Gaps = 5/331 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           ++  + L+SK   L  A  +F ++ +    PD    + L+  + +N   +EA  + ++M 
Sbjct: 240 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 299

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G +   + YN +LN       L +  ++  E+ ++   PD  T+   +   +   +  
Sbjct: 300 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 359

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  + +  + PD ++Y+TL   + K    EK      +M  R    N ++Y  L+
Sbjct: 360 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y NMG   E  R+W +M+    +        ++    + G   KA+            
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 479

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  +I    ++ A +  N++   G+ P   T+ ++  G+ ++G+M++    
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
             K I   R   PD    T+  N    Q ++
Sbjct: 540 MLKMIE--RGVNPDRSTYTSLINGHVTQNNL 568



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 130/311 (41%), Gaps = 6/311 (1%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
            E+L+     CG    PL ++ ++  Y+   +L +  +  + LK K     +   N  L 
Sbjct: 13  VESLVLTYGNCG--SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLG 70

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   + A + + E+ ++ +  +  + + + +   K +  E   + L +ME++    
Sbjct: 71  GLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFP 130

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V Y++L++ Y   G  +E   +   M     K     Y  +I+ L K G++ +A+ + 
Sbjct: 131 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 190

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           DE   I  + D    NILL      + +  AE  ++ + ++G+ P   ++  L     K 
Sbjct: 191 DEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 250

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G +++ L+ F+    +     PD+ + T         G +  A  +   +   G V   +
Sbjct: 251 GCLDQALKYFRDMKNA--GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVV 308

Query: 458 -YNSLLRTYAK 467
            YN++L    K
Sbjct: 309 TYNTILNGLCK 319



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ ++  Y +   + +A+  +  M   G +   + YN ++N +I    +D+   ++ ++
Sbjct: 449 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 508

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   PDV+TYN+ L   + Q   + AE   L++ +  ++PD  +Y++L + ++     
Sbjct: 509 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 568

Query: 261 EKAATTLKEMEKR 273
           ++A     EM +R
Sbjct: 569 KEAFRVHDEMLQR 581



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 38/268 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K + LS A+  F  + ++   PD  T + L++ Y ++    +A  L E M 
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-----AACAS 221
           +       + YN +++ +    +++KV ++  ++  +   P+ ++Y + +       C S
Sbjct: 370 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429

Query: 222 QNDK---ETAEKAFLELKKT---------------------------KIDPDWISYSTLT 251
           +  +   E  EK F     T                            I PD I+Y+TL 
Sbjct: 430 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 489

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + +IK E  ++A   + +ME      + + Y+ +L+ ++  G   E   I  KM+     
Sbjct: 490 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 549

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDE 339
            + + YT +I+  V     ++A  ++DE
Sbjct: 550 PDRSTYTSLINGHVTQNNLKEAFRVHDE 577



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           L++ Y      +EA  L ++M E GF    +  N ++  Y   G   K  + L   L K 
Sbjct: 418 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 477

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD +TYN  +     + + + A     +++ + + PD I+Y+ + + + +    ++A 
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 537

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
             + +M +R    +R  Y+SL++ +       E  R+  +M+
Sbjct: 538 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 579



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A+ F  N+  K   PD  T + L++ +++ +    A AL+ KM   G L   + YN +LN
Sbjct: 466 ADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 525

Query: 184 LYISNGQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            +   G++ +    ML+ +++  +PD  TY   +    +QN+ + A +   E+ +    P
Sbjct: 526 GFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585

Query: 243 D 243
           D
Sbjct: 586 D 586



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  LVK+G  + A  IY E        +    NI++ A     ++E  +SF + +  KG
Sbjct: 68  LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 127

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           + P   T+  L   Y ++G +E+  E      G   K  P      A  N L + G    
Sbjct: 128 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLK--PCVFTYNAIINGLCKTGKYLR 185

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
           A+ +L  +   G    T  YN LL             VE  + DN+ MDAE     +I  
Sbjct: 186 AKGVLDEMLKIGMSPDTATYNILL-------------VECCRNDNM-MDAE-----RIFD 226

Query: 499 EMPVSEV 505
           EMP   V
Sbjct: 227 EMPSQGV 233


>gi|15229739|ref|NP_187745.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|12322901|gb|AAG51439.1|AC008153_12 hypothetical protein; 6614-8314 [Arabidopsis thaliana]
 gi|332641514|gb|AEE75035.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 541

 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 41/332 (12%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  IV +LR   R + ALEV +WM ++  +  +  D++    L  K+  L  AE FFE++
Sbjct: 78  LRGIVEKLRSSNRPRQALEVSDWM-VEQKMYNLPEDFSARFHLTEKVLNLEEAEKFFESI 136

Query: 134 PDKMRGPDTCSALLHSYVQN---KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           P+ MR     ++LL SY +    K   +AE++ +KM + G L  P PYN M +LY S G 
Sbjct: 137 PENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLGN 196

Query: 191 LDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYS 248
            DKV ++L+E+K+N    D VT N  L   A+ +D  T +K   + K+ T++D       
Sbjct: 197 RDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDKFLADRKEITRLD------- 249

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                            T+  M K        AY  L+SLY   G  ++V R+W K  + 
Sbjct: 250 ---------------GLTMLAMAK--------AYE-LMSLYGEAGEIEDVHRVWDKYKAT 285

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIY-DEWESISGTGDPRVPNILLAAYINRNQLEM 367
             K N+ E+  +I SL+KLG+ + AE IY +EWE      D R+P++L++ Y  +  +  
Sbjct: 286 RQKDNE-EFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKGMVMK 344

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           A+   N+  T  I+   T   LL     KKG 
Sbjct: 345 ADKLVNK--TLWIRGLATPITLLLEEMDKKGN 374



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116
           + + +  ++G+ V    L  +++ LR   +   ALE   WM  +    L S DYA  L L
Sbjct: 364 LLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFNLFSEDYATRLHL 423

Query: 117 ISKIRGLSSAENFFE-NLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKC 174
             K+ GL  AENFFE ++P+ M+       LL  Y ++  + ++AEA+ EKM E G    
Sbjct: 424 TEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAVFEKMRELGLQSK 483

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
             P+N +++LY   G+L  V  +L ++K KN  PD+VT N  L A A
Sbjct: 484 LSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANA 530


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 178/360 (49%), Gaps = 12/360 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 200
           T S+LL+ Y  +K+ +EA AL+++M   G+    + +N +++ L++ N   + V  + + 
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 212

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PD+VTY + +     + D + A     ++++ K++P  + Y+T+     K +  
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHM 272

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    KEME +  R N V YSSL+S   N G   +  R+   M+      +   ++ +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTK 378
           I + VK G+  +AE +YDE   +  + DP +     L+  +   ++L+ A+  +  +V+K
Sbjct: 333 IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
              P   ++  L  G+ K  ++++ +E F++   S R  V +    T     L + GD D
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREM--SQRGLVGNTVTYTTLIQGLFQAGDCD 448

Query: 439 GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            A+ +   + + G V   I  YN+LL    K GK+   +++ E +Q+  ++    T  ++
Sbjct: 449 MAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++    +NK   +A  L ++M   G     + Y+ +++   + G+     ++L ++ +
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PDV T++  + A   +     AEK + E+ K  IDP  ++YS+L + +   +  ++
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  + C  + V+YS+L+  +      DE + ++++M       N   YT +I 
Sbjct: 380 AKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQ 439

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L + G+ + A+ I+ E  S     +    N LL       +LE A   +  L    ++P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ ++  G  K G++E   + F     S++   PD        +    +G  + A+ 
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADA 557

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           L   ++  G + ++  YN+L+R   + G
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDG 585



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 128/321 (39%), Gaps = 77/321 (23%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A     ++ ++   PD  T SAL+ ++V+  K  EAE L ++M +       + Y+ +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQ----------------- 222
           +N +  + +LD+  QM + +  K+  PDVV+Y+  +   C ++                 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 223 -----------------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                             D + A++ F E+    + P+ ++Y+TL     K    EKA  
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 266 TLKEMEKR---------------TCRKNR--------------------VAYSSLLSLYT 290
             + +++                 C+  +                    VAY++++S + 
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G K+E   ++K+M       N   Y  +I + ++ G+ E +  +  E  S    GD  
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 607

Query: 351 ----VPNILLAAYINRNQLEM 367
               V N+L    ++++ L+M
Sbjct: 608 TIGLVTNMLHDGRLDKSFLDM 628



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 1/225 (0%)

Query: 186 ISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           +S  +LD    +  E+ K+   P ++ ++  L+A A  N  +       +++   +  + 
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNH 116

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +YS L + + +      A   L +M K     N V  SSLL+ Y +     E + +  +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M     + N   +  +I  L    +  +A  + D   +     D     +++     R  
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            ++A    N++    ++P    +  +  G  K   M+  L  FK+
Sbjct: 237 TDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKE 281


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 192/445 (43%), Gaps = 11/445 (2%)

Query: 34  GAGGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKH 89
           G  G + L   LL   Y +    R      R  K +G  V     N ++  L K+     
Sbjct: 178 GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 237

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALL 147
           A E+ + + ++  +++      + ++ + K + + + ++F  ++ +K   PD  T + L+
Sbjct: 238 AWEIYQEV-VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 296

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTS 206
           ++Y +     EA  LM+ MS  G   C   YN ++N     G+  +   +L E LK   S
Sbjct: 297 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 356

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD  TYN+ L  C   ++   AE+ F E+    + PD +S+S L  L  K    ++A   
Sbjct: 357 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            ++M+      + V Y+ L+  +   G   E L++  +M+     ++   Y  +++ L K
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
                +A+ ++ E        D      L+  Y     +  A + +  ++ + +KP   T
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G+ K  +MEKV E +   I   R+  P+H       N     G +  A  L   
Sbjct: 537 YNTLIDGFCKGSEMEKVNELWNDMIS--RRIYPNHISYGILINGYCNMGCVSEAFRLWDE 594

Query: 447 LRNAGHVSTEIY-NSLLRTYAKAGK 470
           +   G  +T I  N++++ Y +AG 
Sbjct: 595 MVEKGFEATIITCNTIVKGYCRAGN 619



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 140/334 (41%), Gaps = 5/334 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           ++  + L+SK   L  A  +F ++ +    PD    + L+  + +N   +EA  + ++M 
Sbjct: 397 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 456

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G +   + YN +LN       L +  ++  E+ ++   PD  T+   +   +   +  
Sbjct: 457 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 516

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  + +  + PD ++Y+TL   + K    EK      +M  R    N ++Y  L+
Sbjct: 517 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 576

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y NMG   E  R+W +M+    +        ++    + G   KA+            
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 636

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  +I    ++ A +  N++   G+ P   T+ ++  G+ ++G+M++    
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             K I   R   PD    T+  N    Q ++  A
Sbjct: 697 MLKMIE--RGVNPDRSTYTSLINGHVTQNNLKEA 728



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 128/297 (43%), Gaps = 22/297 (7%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM-------------------SECGFL 172
           N P+      + SA++H  V++++  +A+A++ +M                     CG  
Sbjct: 124 NCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCG-- 181

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKA 231
             PL ++ ++  Y+   +L +  +  + LK K     +   N  L         + A + 
Sbjct: 182 SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEI 241

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           + E+ ++ +  +  + + + +   K +  E   + L +ME++    + V Y++L++ Y  
Sbjct: 242 YQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCR 301

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +E   +   M     K     Y  +I+ L K G++ +A+ + DE   I  + D   
Sbjct: 302 QGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTAT 361

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            NILL      + +  AE  ++ + ++G+ P   ++  L     K G +++ L+ F+
Sbjct: 362 YNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 418



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ ++  Y +   + +A+  +  M   G +   + YN ++N +I    +D+   ++ ++
Sbjct: 606 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 665

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   PDV+TYN+ L   + Q   + AE   L++ +  ++PD  +Y++L + ++     
Sbjct: 666 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 725

Query: 261 EKAATTLKEMEKR 273
           ++A     EM +R
Sbjct: 726 KEAFRVHDEMLQR 738



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 38/268 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K + LS A+  F  + ++   PD  T + L++ Y ++    +A  L E M 
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-----AACAS 221
           +       + YN +++ +    +++KV ++  ++  +   P+ ++Y + +       C S
Sbjct: 527 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 586

Query: 222 QNDK---ETAEKAFLELKKT---------------------------KIDPDWISYSTLT 251
           +  +   E  EK F     T                            I PD I+Y+TL 
Sbjct: 587 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 646

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + +IK E  ++A   + +ME      + + Y+ +L+ ++  G   E   I  KM+     
Sbjct: 647 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 706

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDE 339
            + + YT +I+  V     ++A  ++DE
Sbjct: 707 PDRSTYTSLINGHVTQNNLKEAFRVHDE 734



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           L++ Y      +EA  L ++M E GF    +  N ++  Y   G   K  + L   L K 
Sbjct: 575 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 634

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD +TYN  +     + + + A     +++ + + PD I+Y+ + + + +    ++A 
Sbjct: 635 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 694

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
             + +M +R    +R  Y+SL++ +       E  R+  +M+
Sbjct: 695 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 736



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A+ F  N+  K   PD  T + L++ +++ +    A AL+ KM   G L   + YN +LN
Sbjct: 623 ADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 682

Query: 184 LYISNGQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            +   G++ +    ML+ +++  +PD  TY   +    +QN+ + A +   E+ +    P
Sbjct: 683 GFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742

Query: 243 D 243
           D
Sbjct: 743 D 743



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 109/279 (39%), Gaps = 41/279 (14%)

Query: 246 SYSTLTSLYIKME-LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           S+S +  + ++   LP+  A  L+ + K    +  +  S +L+ Y N G    V  +  +
Sbjct: 134 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLT-YGNCGSNPLVFDLLVR 192

Query: 305 MMSLFAKMND---------AEYTCV--------ISSLVKLGEFEKAENIYDEWESISGTG 347
                 K+ +         ++  CV        +  LVK+G  + A  IY E        
Sbjct: 193 TYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 252

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +    NI++ A     ++E  +SF + +  KG+ P   T+  L   Y ++G +E+  E  
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 312

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA 466
               G   K  P      A  N L + G    A+ +L  +   G    T  YN LL    
Sbjct: 313 DSMSGKGLK--PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL---- 366

Query: 467 KAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEV 505
                    VE  + DN+ MDAE     +I  EMP   V
Sbjct: 367 ---------VECCRNDNM-MDAE-----RIFDEMPSQGV 390


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 197/449 (43%), Gaps = 47/449 (10%)

Query: 77  IVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           +++ L  L + + A+ + EW+    +  D+KL S    + + ++ +    S A    + +
Sbjct: 164 LLKALDVLGKSERAILLFEWVVSNSVSGDVKLDSKAVELMIRILGRESKYSIALKLLDKI 223

Query: 134 PDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           P      D   C+ +LH+Y +N K  +A A+ E+M +CG     + YN ML++Y   G+ 
Sbjct: 224 PIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRS 283

Query: 192 -DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            DK+  +L E++ +    D  T +  ++AC  +     A++ F+ELK +  +P  ++Y+ 
Sbjct: 284 WDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNA 343

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L  ++ K  +  +A   LKEME   C  + V Y+ L++ Y   G+ +E   +   M    
Sbjct: 344 LLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKG 403

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWES--------------------------- 342
              N   YT VI++  + G+  KA  ++++ +                            
Sbjct: 404 VMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMI 463

Query: 343 -------ISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
                  I+G    R+  N LLA   ++ + +     +  +   G +P   T+  L   Y
Sbjct: 464 KILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAY 523

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
            + G      + + + + +   + P      A  N L  +GD   AE +L+ +RN G   
Sbjct: 524 GRCGSELDAAKMYDEMMKA--GFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKP 581

Query: 455 TEIYNSL-LRTYAKAGKMPLIIVERMQKD 482
            E   SL L  YAK G +  +  ER+ KD
Sbjct: 582 NETSFSLMLHCYAKGGNVRGL--ERIGKD 608



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 15/365 (4%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           ++ A+ FF  L      P T +  ALL  + +    +EA  ++++M +       + YN 
Sbjct: 319 INEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNE 378

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+  G  ++   ++  + +K   P+ VTY   + A      +  A + F ++KK+ 
Sbjct: 379 LVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSG 438

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+  +Y+++ +L  K    E+    L +M    C  NR+ +++LL++  + G    V 
Sbjct: 439 CVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVN 498

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++M +   +     +  +IS+  + G    A  +YDE      T      N LL A 
Sbjct: 499 HVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNAL 558

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSV-RK 416
             R   + AES    +  KG KP  T++ L+   Y K G + + LE   K I  G +   
Sbjct: 559 ARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNV-RGLERIGKDIYDGQIFPS 617

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIV 476
           WV    LI A +     +G     E L   ++N       I+NS+L  +AK       + 
Sbjct: 618 WVLLRTLILANFKCRAVRGMERAFEEL---MKNGYKPDMVIFNSMLSIFAKNN-----MY 669

Query: 477 ERMQK 481
           ER QK
Sbjct: 670 ERAQK 674



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 115/272 (42%), Gaps = 9/272 (3%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G DT + L+ +Y +     +A  + ++M + GF  C   YN +LN     G       +L
Sbjct: 512 GKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVL 571

Query: 199 QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
            +++ K   P+  +++L L   A   +    E+   ++   +I P W+   TL     K 
Sbjct: 572 LDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKC 631

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA----KMN 313
                     +E+ K   + + V ++S+LS++     K+ +    +KM+ L      + +
Sbjct: 632 RAVRGMERAFEELMKNGYKPDMVIFNSMLSIFA----KNNMYERAQKMLDLIRESGLQPD 687

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  +++   + GE  KAE I         + D    N ++  +  +  ++ A    +
Sbjct: 688 LVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMS 747

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            + T+GI PC  T+     GY  +G   +V E
Sbjct: 748 EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDE 779



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R +   E  FE L      PD    +++L  + +N     A+ +++ + E G     +
Sbjct: 630 KCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLV 689

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN ++N+Y   G+  K  ++L+ L K   SPD+V+YN  +     Q   + A +   E+
Sbjct: 690 TYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEM 749

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
               I P   +Y+T  S Y    +  +    +  M ++ C+ N + Y  ++  Y
Sbjct: 750 TTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGY 803



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 8/193 (4%)

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
           E   E++ + G+    + +N ML+++  N   ++  +ML  ++++   PD+VTYN  +  
Sbjct: 638 ERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNM 697

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
            A + +   AE+    L K+   PD +SY+T+   + +  L ++A   + EM  R     
Sbjct: 698 YARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPC 757

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA----- 333
              Y++ +S Y   G   EV  +   M+    K N+  Y  ++    K  +++ A     
Sbjct: 758 IFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMDFIF 817

Query: 334 --ENIYDEWESIS 344
             +NI D +++ S
Sbjct: 818 GIKNIDDSFDNHS 830


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 197/423 (46%), Gaps = 11/423 (2%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           +E N+++  + K+K++   + + E M+ +  I      Y + ++   +   +S A     
Sbjct: 11  FEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISN 188
            +      P   T S+LL+ Y   K+ ++A AL+++M E G+    + +  +++ L++ N
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
              + V  + + +++   P++VTY + +     + D + A     +++  KI+ D + ++
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           T+     K    + A    KEME +  R N V YSSL+S   + G   +  ++   M+  
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 249

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   +  +I + VK G+F +AE ++D+    S   D    N L+  +   ++L+ A
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA 309

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
           +  +  +V+K   P   T+  L  G+ K  ++E   E F++   S R  V D    T   
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTLI 367

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
             L   GD D A+ +   + + G V  +I  Y+ LL      GK+   L + + MQK  +
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426

Query: 485 QMD 487
           ++D
Sbjct: 427 KLD 429



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K R +  A N F+ +  K   P+  T S+L+       + ++A  L+  M E   
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + +N +++ ++  G+  +  ++  ++ K++  PD+ TYN  +      +  + A++
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F  +      PD  +Y+TL   + K +  E      +EM  R    + V Y++L+    
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G  D   +++K+M+S     +   Y+ ++  L   G+ EKA  ++D  +      D  
Sbjct: 372 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 431

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +   ++       +++     +  L  KG+KP   T+  +  G   K  +++     KK
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  FE +  K   PD  T + L+  + ++K+  +   L  +MS  G +   + Y  
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++     +G  D   ++ +++      PD++TY++ L    +    E A + F  ++K++
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  D   Y+T+     K    +        +  +  + N V Y++++S   +     E  
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNIL 355
            + KKM       +   Y  +I + ++ G+   +  +  E  S    GD      V N+L
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545

Query: 356 LAAYINRNQLEM 367
               ++++ L+M
Sbjct: 546 HDGRLDKSFLDM 557



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 45/292 (15%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFF 130
            N I+  L K +    AL + + ME     K +  +   +  LIS +      S A    
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEME----TKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
            ++ +K   P+  T +AL+ ++V+  K  EAE L + M +         YN ++N +  +
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQ------------------------ 222
            +LDK  QM + +  K+  PD+ TYN  +   C S+                        
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 223 ----------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
                      D + A+K F ++    + PD ++YS L          EKA      M+K
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              + +   Y++++      G  D+   ++  +     K N   Y  +IS L
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 20/242 (8%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI---RGLSSAENFFE 131
           N +++   K KR +   E+  + E+ +  + + GD   +  LI  +       +A+  F+
Sbjct: 329 NTLIKGFCKSKRVEDGTEL--FREMSH--RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +      PD  T S LL     N K  +A  + + M +         Y  M+      G
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID---PDWI 245
           ++D    +   L  K   P+VVTYN  ++   S   K   ++A+  LKK K D   PD  
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS---KRLLQEAYALLKKMKEDGPLPDSG 501

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+TL   +++      +A  ++EM  R+CR   V  +S + L  NM +   + + +  M
Sbjct: 502 TYNTLIRAHLRDGDKAASAELIREM--RSCR--FVGDASTIGLVANMLHDGRLDKSFLDM 557

Query: 306 MS 307
           +S
Sbjct: 558 LS 559


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 184/405 (45%), Gaps = 11/405 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIK--LVSGDYAVHLDLISKIRGLSSAENFF 130
           EL   ++ L   K++  AL   +W   Q D +  L +   A+ + ++ K   +SSA N F
Sbjct: 137 ELLAFLKGLGFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLF 196

Query: 131 ENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
             L +     D  S  +L+ ++  + +  EA  + +KM E G     + YN +LN++   
Sbjct: 197 NGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKM 256

Query: 189 GQL-DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           G   +K+  +++++K +  +PD  TYN  +  C   +  + A + F E+K      D ++
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVT 316

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+ L  +Y K   P++A   L EME      + V Y+SL+S Y   G  DE + +  +M 
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
               K +   YT ++S   + G+ E A NI++E  +     +    N  +  Y NR +  
Sbjct: 377 EKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFV 436

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                ++ +   G+ P   TW  L   + + G   +V   FK+   +   +VP+      
Sbjct: 437 DMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERETFNT 494

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
             +     G  + A  +   + +AG V+ ++  YN++L   A+ G
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAALARGG 538



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 162/361 (44%), Gaps = 14/361 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SAA      +E+G ++  Y    ++       RY+ A+ V + ME +   K     Y V 
Sbjct: 191 SAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKME-EEGCKPTLITYNVI 249

Query: 114 LDLISKIRGLSSAENFFENLPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           L++  K   + +  N   +L +KM+     PD  T + L+    +     EA  + E+M 
Sbjct: 250 LNVFGK---MGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMK 306

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
             GF    + YN +L++Y  + +  +  ++L E++ N  SP +VTYN  ++A A     +
Sbjct: 307 AAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLD 366

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   ++ +    PD  +Y+TL S + +    E A    +EM    C+ N   +++ +
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFI 426

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            +Y N G   ++++I+ ++       +   +  +++   + G   +   ++ E +     
Sbjct: 427 KMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 486

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKV 403
            +    N L++AY      E A + Y R++  G+ P  +T+  +     + G   Q EKV
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546

Query: 404 L 404
           L
Sbjct: 547 L 547



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 3/185 (1%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           + SK   L  AE  F  L ++   PD  T ++++  Y + +   +A  +++ M E GF  
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTP 662

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
               YN ++ ++  +    K  ++L+E L K   PD+++YN  + A         A + F
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            E++ + I PD I+Y+T    Y    + E+A   ++ M K  CR N+  Y+S++  Y  +
Sbjct: 723 SEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782

Query: 293 GYKDE 297
             KDE
Sbjct: 783 NRKDE 787



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 62/360 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   L    +   + SA N FE + +    P+ C+  A +  Y    K  +   + ++++
Sbjct: 387 YTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEIN 446

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
            CG     + +N +L ++  NG   +V  + +E+K+    P+  T+N  ++A +     E
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 506

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   +  +    + PD  +Y+T+ +   +  + E++   L EME   C+ N + Y SLL
Sbjct: 507 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-------SLV----KLGEFEKAEN 335
             Y N            K + L   + +  Y+ VI        +LV    K     +AE 
Sbjct: 567 HAYAN-----------GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAER 615

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAE---------------SFYNRL----- 375
            + E +    + D    N +++ Y  R  +  A                + YN L     
Sbjct: 616 AFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHS 675

Query: 376 ---------------VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
                          + KGIKP   ++  + + Y +  +M      F +   S    VPD
Sbjct: 676 RSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDS--GIVPD 733



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 120/285 (42%), Gaps = 9/285 (3%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           S+      A   +  + D    PD  T + +L +  +     ++E ++ +M +       
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L Y  +L+ Y +  ++  +  + +E+      P  V     +  C+  +    AE+AF E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT---N 291
           LK+    PD  + +++ S+Y + ++  KA   L  M++R    +   Y+SL+ +++   +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSAD 679

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +E+LR   ++++   K +   Y  VI +  +      A  I+ E        D   
Sbjct: 680 FGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVIT 736

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            N  + +Y   +  E A      ++  G +P   T+  +  GY K
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 5/196 (2%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EAE    ++ E GF       N M+++Y     + K  ++L  +K +  +P + TYN  +
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLM 671

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
              +   D   +E+   E+    I PD ISY+T+   Y +      A+    EM      
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIV 731

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + + Y++ +  Y      +E + + + M+    + N   Y  ++    KL   ++A+  
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLF 791

Query: 337 YDEWESISGTGDPRVP 352
            ++  ++    DP  P
Sbjct: 792 VEDLRNL----DPHAP 803


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 168/351 (47%), Gaps = 8/351 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQMLQE 200
           T S+LL+ Y   K+ ++A AL+++M E G+    + +  +++ L++ N   + V  + + 
Sbjct: 81  TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 140

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +++   P++VTY + +     + D + A     +++  KI+ D + ++T+     K    
Sbjct: 141 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 200

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    KEME +  R N V YSSL+S   + G   +  ++   M+      N   +  +
Sbjct: 201 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 260

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I + VK G+F +AE ++D+    S   D    N L+  +   ++L+ A+  +  +V+K  
Sbjct: 261 IDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDC 320

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+ K  ++E   E F++   S R  V D    T     L   GD D A
Sbjct: 321 FPDLDTYNTLIKGFCKSKRVEDGTELFREM--SHRGLVGDTVTYTTLIQGLFHDGDCDNA 378

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
           + +   + + G V  +I  Y+ LL      GK+   L + + MQK  +++D
Sbjct: 379 QKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 428



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K R +  A N F+ +  K   P+  T S+L+       + ++A  L+  M E   
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + +N +++ ++  G+  +  ++  ++ K++  PD+ TYN  +      +  + A++
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 310

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F  +      PD  +Y+TL   + K +  E      +EM  R    + V Y++L+    
Sbjct: 311 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 370

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G  D   +++K+M+S     +   Y+ ++  L   G+ EKA  ++D  +      D  
Sbjct: 371 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 430

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +   ++       +++     +  L  KG+KP   T+  +  G   K  +++     KK
Sbjct: 431 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 489



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  FE +  K   PD  T + L+  + ++K+  +   L  +MS  G +   + Y  
Sbjct: 305 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 364

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++     +G  D   ++ +++      PD++TY++ L    +    E A + F  ++K++
Sbjct: 365 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 424

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  D   Y+T+     K    +        +  +  + N V Y++++S   +     E  
Sbjct: 425 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 484

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNIL 355
            + KKM       +   Y  +I + ++ G+   +  +  E  S    GD      V N+L
Sbjct: 485 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 544

Query: 356 LAAYINRNQLEM 367
               ++++ L+M
Sbjct: 545 HDGRLDKSFLDM 556



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 45/292 (15%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFF 130
            N I+  L K +    AL + + ME     K +  +   +  LIS +      S A    
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEME----TKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
            ++ +K   P+  T +AL+ ++V+  K  EAE L + M +         YN ++N +  +
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQ------------------------ 222
            +LDK  QM + +  K+  PD+ TYN  +   C S+                        
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 223 ----------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
                      D + A+K F ++    + PD ++YS L          EKA      M+K
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              + +   Y++++      G  D+   ++  +     K N   Y  +IS L
Sbjct: 423 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 20/242 (8%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI---RGLSSAENFFE 131
           N +++   K KR +   E+  + E+ +  + + GD   +  LI  +       +A+  F+
Sbjct: 328 NTLIKGFCKSKRVEDGTEL--FREMSH--RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 383

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +      PD  T S LL     N K  +A  + + M +         Y  M+      G
Sbjct: 384 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 443

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID---PDWI 245
           ++D    +   L  K   P+VVTYN  ++   S   K   ++A+  LKK K D   PD  
Sbjct: 444 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS---KRLLQEAYALLKKMKEDGPLPDSG 500

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+TL   +++      +A  ++EM  R+CR   V  +S + L  NM +   + + +  M
Sbjct: 501 TYNTLIRAHLRDGDKAASAELIREM--RSCR--FVGDASTIGLVANMLHDGRLDKSFLDM 556

Query: 306 MS 307
           +S
Sbjct: 557 LS 558


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 198/433 (45%), Gaps = 19/433 (4%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENF 129
           E ++++  + K+K++   +   E ME    I  VS +   Y + ++ + +   LS A   
Sbjct: 67  EFSKLLSAIAKMKKFDLVISFGEKME----ILGVSHNLYTYNIMINCLCRRSQLSFALAI 122

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +     GP   T ++LL+ +    + +EA AL+++M E G+    + +  +++ L+ 
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + + + K   PD+VTY   +     + + + A     +++K KI+ D + 
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YST+     K    + A     EM+ +  R +   YSSL+S   N G   +  R+   M+
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQ 364
                 N   +  +I +  K G+  +AE ++DE   I  + DP +   N L+  +   ++
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM--IQRSIDPNIVTYNSLINGFCMHDR 360

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           L+ A+  +  +V+K   P   T+  L  G+ K  ++   +E F+    S R  V +    
Sbjct: 361 LDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM--SRRGLVGNTVTY 418

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 481
           T   +   +  D D A+ +   + + G H +   YN+LL    K GK+   +++ E +QK
Sbjct: 419 TTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK 478

Query: 482 DNVQMDAETQKVL 494
             ++ D  T  ++
Sbjct: 479 SKMEPDIYTYNIM 491



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 135/303 (44%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K R +  A N F  + +K   PD  T S+L+       + ++A  L+  M 
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E       + +N +++ +   G+L +  ++  E+ +++  P++VTYN  +      +  +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A++ F  +      PD ++Y+TL + + K +         ++M +R    N V Y++L+
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             +      D    ++K+M+S     N   Y  ++  L K G+ EKA  +++  +     
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI+        ++E     +  L  KG+KP    +  +  G+ KKG  E+    
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542

Query: 407 FKK 409
           F K
Sbjct: 543 FIK 545



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 3/229 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  F  +  K   PD  T + L++ + + KK  +   L   MS  G +   + Y  
Sbjct: 361 LDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTT 420

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +      D    + +++      P+++TYN  L         E A   F  L+K+K
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           ++PD  +Y+ ++    K    E        +  +  + + +AY++++S +   G K+E  
Sbjct: 481 MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAY 540

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
            ++ KM       +   Y  +I + ++ G+   +  +  E  S    GD
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGD 589



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 3/246 (1%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A   F E+ K++  P  + +S L S   KM+  +   +  ++ME      N   Y+ +
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++           L I  KMM L    +      +++         +A  + D+   +  
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D      L+      N+   A +   R+V KG +P   T+  +  G  K+G+ +  L 
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
              K      K   D  + +   + L +   +D A +L   + N G       Y+SL+  
Sbjct: 227 LLNKM--EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284

Query: 465 YAKAGK 470
               G+
Sbjct: 285 LCNYGR 290


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 198/425 (46%), Gaps = 17/425 (4%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           E N+++  + K+ +++  + + E M+   + +D+      Y++ ++   +   LS A   
Sbjct: 85  EFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLY----TYSIFINCFCRRSQLSLALAV 140

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      PD  T S+LL+ Y  +K+ ++A AL+++M E G+      +  +++ L++
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + Q +++   PD+VTY   +     + D + A     +++  +I  + + 
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           ++T+     K    E A     EME +  R N V Y+SL++   N G   +  R+   M+
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   +  +I +  K G+  +AE +++E    S   D    N+L+  +   N+L+
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A+  +  +V+K   P   T+  L  G+ K  ++E  +E F++   S R  V +    T 
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM--SQRGLVGNTVTYTT 438

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKD 482
                 + GD D A+ +   +  +  V T+I  Y+ LL      GK+   L+I + +QK 
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMV-SNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS 497

Query: 483 NVQMD 487
            ++++
Sbjct: 498 EMELN 502



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 23/330 (6%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           + ++ S  + +    A  L  +M   G     + YN ++N   + G+     ++L   L+
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLE 321

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K  +P+VVT+N  + A   +     AEK   E+ +  IDPD I+Y+ L + +      ++
Sbjct: 322 KKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDE 381

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    K M  + C  N   Y++L++ +      ++ + ++++M       N   YT +I 
Sbjct: 382 AKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQ 441

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              + G+ + A+ ++ +  S     D    +ILL    +  +L+ A   +  L    ++ 
Sbjct: 442 GFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL 501

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNK--LEEQGDI-- 437
               +  +  G  K G++ +  + F     S++  V  +  +I+   +K  L+E  D+  
Sbjct: 502 NIFIYNTMIEGMCKAGKVGEAWDLFCSL--SIKPDVVTYNTMISGLCSKRLLQEADDLFR 559

Query: 438 ----DGAEHLLVTLRNAGHVSTEIYNSLLR 463
               DG      TL N+G      YN+L+R
Sbjct: 560 KMKEDG------TLPNSG-----TYNTLIR 578



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 35/234 (14%)

Query: 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           D V      +K    P +V +N  L+A A  N  E       +++   I  D  +YS   
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----------------MGYK 295
           + + +      A   L +M K     + V  SSLL+ Y +                MGYK
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185

Query: 296 DEVLRIWKKMMSLFAKMNDAE-------------------YTCVISSLVKLGEFEKAENI 336
            +       +  LF     +E                   Y  V++ L K G+ + A N+
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL 245

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            ++ E+     +  + N ++ +      +E+A   +  + TKGI+P   T+  L
Sbjct: 246 LNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 199/429 (46%), Gaps = 9/429 (2%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           +E N+++  + K+K++   + + E M+ +  I      Y + ++   +   +S A     
Sbjct: 86  FEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILINCFCRRSQISLALALLG 144

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISN 188
            +      P   T S+LL+ Y   K+ ++A AL+++M E G+    + +  +++ L++ N
Sbjct: 145 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 204

Query: 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
              + V  + + +++   P++VTY + +     + D + A     +++  KI+ + + YS
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYS 264

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           T+     K    + A     EME +  R N + YSSL+S   N     +  R+   M+  
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   +  +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+ A
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
           +  +  +++K   P   T+  L  G+ K  ++++ +E F++   S R  V +    T   
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM--SQRGLVGNTVTYTTLI 442

Query: 429 NKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
           +   +  D D A+ +   + + G H +   YN+LL    K GK+   +++ E +Q+  ++
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 486 MDAETQKVL 494
               T  ++
Sbjct: 503 PTIYTYNIM 511



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 137/303 (45%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K R    A N F  + +K   P+  T S+L+      ++ ++A  L+  M 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E       + +N +++ ++  G+L +  ++  E+ K++  PD+ TY+  +      +  +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+  F  +      P+ ++Y+TL + + K +  ++     +EM +R    N V Y++L+
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             +      D    ++K+M+S     N   Y  ++  L K G+ EKA  +++  +     
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                 NI++       ++E     +  L  KG+KP    +  +  G+ +KG  E+    
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 407 FKK 409
           F+K
Sbjct: 563 FRK 565


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 183/405 (45%), Gaps = 11/405 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIK--LVSGDYAVHLDLISKIRGLSSAENFF 130
           EL   ++ L   K++  AL   +W   Q D +  L +   A+ + ++ K   +SSA N F
Sbjct: 137 ELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMF 196

Query: 131 ENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
             L +     D  S  +L+ ++  + +  EA  + +KM E G     + YN +LN++   
Sbjct: 197 NGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKM 256

Query: 189 GQL-DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           G   +K+  +++++K +  +PD  TYN  +  C   +  + A + F E+K      D ++
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+ L  +Y K   P++A   L EM       + V Y+SL+S Y   G  DE + +  +M 
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
               K +   YT ++S   + G+ E A +I++E  +     +    N  +  Y NR +  
Sbjct: 377 EKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFT 436

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                ++ +   G+ P   TW  L   + + G   +V   FK+   +   +VP+      
Sbjct: 437 EMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERETFNT 494

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
             +     G  + A  +   + +AG V+ ++  YN++L   A+ G
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAALARGG 538



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 162/361 (44%), Gaps = 14/361 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SAA      +E+G ++  Y    ++       RY+ A+ V + ME +   K     Y V 
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKME-EDGCKPTLITYNVI 249

Query: 114 LDLISKIRGLSSAENFFENLPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           L++  K   + +  N   +L +KM+     PD  T + L+    +     EA  + E+M 
Sbjct: 250 LNVFGK---MGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMK 306

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
             GF    + YN +L++Y  + +  +  ++L E+  N  SP +VTYN  ++A A     +
Sbjct: 307 AAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLD 366

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   ++ +    PD  +Y+TL S + +    E A +  +EM    C+ N   +++ +
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            +Y N G   E+++I+ ++       +   +  +++   + G   +   ++ E +     
Sbjct: 427 KMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 486

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKV 403
            +    N L++AY      E A + Y R++  G+ P  +T+  +     + G   Q EKV
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546

Query: 404 L 404
           L
Sbjct: 547 L 547



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           + SK   L  AE  F  L ++   PD  T ++++  Y + +  A+A  +++ M E GF  
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
               YN ++ ++  +    K  ++L+E L K   PD+++YN  + A         A + F
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            E++ + I PD I+Y+T    Y    + E+A   ++ M K  CR N+  Y+S++  Y  +
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782

Query: 293 GYKDE 297
             KDE
Sbjct: 783 NRKDE 787



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 62/360 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   L    +   + SA + FE + +    P+ C+  A +  Y    K  E   + ++++
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
            CG     + +N +L ++  NG   +V  + +E+K+    P+  T+N  ++A +     E
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 506

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   +  +    + PD  +Y+T+ +   +  + E++   L EME   C+ N + Y SLL
Sbjct: 507 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-------SLV----KLGEFEKAEN 335
             Y N            K + L   + +  Y+ VI        +LV    K     +AE 
Sbjct: 567 HAYAN-----------GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAER 615

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF---------------YNRL----- 375
            + E +    + D    N +++ Y  R  +  A                  YN L     
Sbjct: 616 AFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHS 675

Query: 376 ---------------VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
                          + KGIKP   ++  + + Y +  +M      F +   S    VPD
Sbjct: 676 RSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNS--GIVPD 733



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 121/285 (42%), Gaps = 9/285 (3%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           S+      A   +  + D    PD  T + +L +  +     ++E ++ +M +       
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L Y  +L+ Y +  ++  +  + +E+      P  V     +  C+  +    AE+AF E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT---N 291
           LK+    PD  + +++ S+Y + ++  KA   L  M++R    +   Y+SL+ +++   +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +E+LR   ++++   K +   Y  VI +  +      A  I+ E  +     D   
Sbjct: 680 FGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVIT 736

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            N  + +Y   +  E A      ++  G +P   T+  +  GY K
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EAE    ++ E GF       N M+++Y     + K   +L  +K +  +P + TYN  +
Sbjct: 612 EAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
              +   D   +E+   E+    I PD ISY+T+   Y +      A+    EM      
Sbjct: 672 YMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIV 731

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + + Y++ +  Y      +E + + + M+    + N   Y  ++    KL   ++A+  
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLF 791

Query: 337 YDEWESISGTGDPRVP 352
            ++  ++    DP  P
Sbjct: 792 VEDLRNL----DPHAP 803


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 156/330 (47%), Gaps = 8/330 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           +AL+  +++  +   A  ++++M   GFL   + YN M+  + S G+LD   ++ +E LK
Sbjct: 142 NALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLK 201

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N  P V+TY + + A       + A K   E+    ++PD ++Y+ +     K  + +K
Sbjct: 202 DNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDK 261

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+ +  R C+ + + Y+ LL    + G   E  ++  +M+S+  K N   ++ +I 
Sbjct: 262 AFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIG 321

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L + G+ E+A N+    +      D    + L+A +    +L++A  F   +++ G  P
Sbjct: 322 TLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLP 381

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
               +  +  G  + G+ ++ LE F+K   +G      P+       ++ L   GD   A
Sbjct: 382 DIVNYNTIMAGLCRTGKADQALEVFEKLDEVG----CPPNVSSYNTLFSALWSSGDRYRA 437

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             +++ L N G    EI YNSL+    + G
Sbjct: 438 LEMILKLLNQGIDPDEITYNSLISCLCRDG 467



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/326 (19%), Positives = 132/326 (40%), Gaps = 3/326 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL+   +  K  E+   +E M + G+    +    ++  + ++  + K  ++++ L++  
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV  YN  ++     N  E A +    +K     PD ++Y+ +   +      + A  
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             +E+ K  C    + Y+ L+      G  D  +++  +M+S   + +   Y  +I  + 
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K    +KA  +     S     D    NILL   ++R +    E   + +++ G KP   
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T  +L     + G++E+ +   +      +   PD             +G +D A   L 
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSM--KEKGLKPDAYCYDPLIAGFCREGRLDLATEFLE 372

Query: 446 TLRNAGHVSTEI-YNSLLRTYAKAGK 470
            + + G +   + YN+++    + GK
Sbjct: 373 YMISDGCLPDIVNYNTIMAGLCRTGK 398



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 124/297 (41%), Gaps = 2/297 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ + + +     A  L+++M   G     L YN ++        +DK  ++L+ L
Sbjct: 210 TYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSL 269

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +   PD++TYN+ L    S+      EK   E+      P+ +++S L     +    
Sbjct: 270 SSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKV 329

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   L+ M+++  + +   Y  L++ +   G  D      + M+S     +   Y  +
Sbjct: 330 EEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTI 389

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++ L + G+ ++A  ++++ + +    +    N L +A  +      A     +L+ +GI
Sbjct: 390 MAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGI 449

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECF-KKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            P   T+  L     + G +++ +E       G  R  V  + +I     K+    D
Sbjct: 450 DPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAND 506



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 126 AENFFENLPDKMRGPDT-C-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A N   ++ +K   PD  C   L+  + +  +   A   +E M   G L   + YN ++ 
Sbjct: 332 AVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMA 391

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
                G+ D+  ++ ++L +    P+V +YN   +A  S  D+  A +  L+L    IDP
Sbjct: 392 GLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDP 451

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D I+Y++L S   +  + ++A   L +M+    R N V+Y+ +L     +   ++ + + 
Sbjct: 452 DEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVL 511

Query: 303 KKMMSLFAKMNDAEYTCVISSL 324
             M     + N+  Y  +I  +
Sbjct: 512 AAMTEKGCQPNETTYILLIEGI 533



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 121/271 (44%), Gaps = 7/271 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL + +   K +E E L+ +M   G     + ++ ++     +G++++   +
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+ +K K   PD   Y+  +A    +   + A +    +      PD ++Y+T+ +   +
Sbjct: 336 LRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCR 395

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A    +++++  C  N  +Y++L S   + G +   L +  K+++     ++  
Sbjct: 396 TGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEIT 455

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNR 374
           Y  +IS L + G  ++A  +  + +S  G   P V   NI+L      N+   A      
Sbjct: 456 YNSLISCLCRDGMVDEAIELLVDMQS--GRYRPNVVSYNIILLGLCKVNRANDAIEVLAA 513

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  KG +P  TT+ LL  G    G   + +E
Sbjct: 514 MTEKGCQPNETTYILLIEGIGFSGLRAEAME 544



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 9/199 (4%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---P 177
           L  A  F E +      PD  +   ++    +  K+ +A  + EK+ E G   CP     
Sbjct: 364 LDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG---CPPNVSS 420

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN + +   S+G   +  +M L+ L +   PD +TYN  ++        + A +  ++++
Sbjct: 421 YNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQ 480

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
             +  P+ +SY+ +     K+     A   L  M ++ C+ N   Y  L+      G + 
Sbjct: 481 SGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRA 540

Query: 297 EVLRIWKKMMSLFAKMNDA 315
           E + +   +  + A   D+
Sbjct: 541 EAMELANSLHGMNAISEDS 559


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 197/432 (45%), Gaps = 17/432 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           E N+++  + K+ ++   + + E M+   + YD+      Y + ++   +   L  A   
Sbjct: 82  EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY----SYNILINCFCRRSQLPLALAV 137

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      PD  T S+LL+ Y   K+ +EA AL+++M    +    + +N +++ L++
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + + + +   PD+ TY   +     + D + A     +++K KI+ D + 
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+T+       +    A     EM+ +  R N V Y+SL+    N G   +  R+   M+
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A+  +  +++K   P   T+  L  G+ K  ++E+ +E F++   S R  V +      
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYNT 435

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKD 482
               L + GD D A+ +   + + G V  +I  Y+ LL    K GK+   L++ E +QK 
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 483 NVQMDAETQKVL 494
            ++ D  T  ++
Sbjct: 495 KMEPDIYTYNIM 506



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 155/350 (44%), Gaps = 9/350 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D +   + ++ A N F  + +K   P+  T ++L+       + ++A  L+  M 
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E       + ++ +++ ++  G+L +  ++  E+ K++  PD+ TY+  +      +  +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+  F  +      P+ ++Y+TL   + K +  E+     +EM +R    N V Y++L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D   +I+KKM+S     +   Y+ ++  L K G+ EKA  +++  +     
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++       ++E     +  L  KG+KP    +  +  G+ +KG  E+    
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557

Query: 407 FK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           F+  K  G++      + LI A        GD   +  L+  +R+ G V 
Sbjct: 558 FREMKEDGTLPNSGTYNTLIRARL----RDGDKAASAELIKEMRSCGFVG 603


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 197/432 (45%), Gaps = 17/432 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           E N+++  + K+ ++   + + E M+   + YD+      Y + ++   +   L  A   
Sbjct: 66  EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY----SYNILINCFCRRSQLPLALAV 121

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      PD  T S+LL+ Y   K+ +EA AL+++M    +    + +N +++ L++
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 181

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            N   + V  + + + +   PD+ TY   +     + D + A     +++K KI+ D + 
Sbjct: 182 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 241

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+T+       +    A     EM+ +  R N V Y+SL+    N G   +  R+   M+
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A+  +  +++K   P   T+  L  G+ K  ++E+ +E F++   S R  V +      
Sbjct: 362 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM--SQRGLVGNTVTYNT 419

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKD 482
               L + GD D A+ +   + + G V  +I  Y+ LL    K GK+   L++ E +QK 
Sbjct: 420 LIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478

Query: 483 NVQMDAETQKVL 494
            ++ D  T  ++
Sbjct: 479 KMEPDIYTYNIM 490



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 155/350 (44%), Gaps = 9/350 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D +   + ++ A N F  + +K   P+  T ++L+       + ++A  L+  M 
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E       + ++ +++ ++  G+L +  ++  E+ K++  PD+ TY+  +      +  +
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+  F  +      P+ ++Y+TL   + K +  E+     +EM +R    N V Y++L+
Sbjct: 362 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 421

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D   +I+KKM+S     +   Y+ ++  L K G+ EKA  +++  +     
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 481

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++       ++E     +  L  KG+KP    +  +  G+ +KG  E+    
Sbjct: 482 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 541

Query: 407 FK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           F+  K  G++      + LI A        GD   +  L+  +R+ G V 
Sbjct: 542 FREMKEDGTLPNSGTYNTLIRARL----RDGDKAASAELIKEMRSCGFVG 587


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 171/363 (47%), Gaps = 12/363 (3%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 196
           PD  T ++LL+ +    + ++A AL+++M E G+    + +  +++ L++ N   + V  
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVAL 205

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + + +++   PD+VTY   +     + D + A     +++  KI+ + + YST+     K
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               + A     EME +  R N + YSSL+S   N G   +  R+   M+      N   
Sbjct: 266 YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVT 325

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNR 374
           ++ +I + VK G+  KAE +Y+E   I  + DP +     L+  +   ++L  A+     
Sbjct: 326 FSALIDAFVKKGKLVKAEKLYEEM--IKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLEL 383

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           ++ K   P   T+  L  G+ K  +++K +E F++   S R  V +    T   +   + 
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM--SQRGLVGNTVTYTTLIHGFFQA 441

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 491
            D D A+ +   + + G H +   YN LL    K GK+   +++ E +Q+  ++ D  T 
Sbjct: 442 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 501

Query: 492 KVL 494
            ++
Sbjct: 502 NIM 504



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 120/257 (46%), Gaps = 1/257 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           S ++ S  + +   +A  L  +M   G     + Y+ +++   + G+     ++L ++ +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +P++VT++  + A   +     AEK + E+ K  IDP+  +YS+L + +  ++   +
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+ M ++ C  N V Y++L++ +      D+ + ++++M       N   YT +I 
Sbjct: 377 AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIH 436

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              +  + + A+ ++ +  S+    +    NILL       +L  A   +  L    ++P
Sbjct: 437 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 496

Query: 383 CYTTWELLTWGYLKKGQ 399
              T+ ++  G  K G+
Sbjct: 497 DIYTYNIMIEGMCKAGK 513



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 124/267 (46%), Gaps = 5/267 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K R    A N F  + +K   P+  T S+L+       + ++A  L+  M 
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYN-LWLAACASQNDK 225
           E       + ++ +++ ++  G+L K  ++ +E+ K++  P++ TY+ L    C      
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E  +   L ++K  + P+ ++Y+TL + + K +  +K     +EM +R    N V Y++L
Sbjct: 376 EAKQMLELMIRKDCL-PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  +      D    ++K+M+S+    N   Y  ++  L K G+  KA  +++  +  + 
Sbjct: 435 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 494

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFY 372
             D    NI++       + +M   ++
Sbjct: 495 EPDIYTYNIMIEGMCKAGKWKMGGIYF 521



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 3/189 (1%)

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + +S LLS    M   D V+   +KM  L    N   Y  +I+   +      A  +  +
Sbjct: 79  IEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGK 138

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
              +    D    N LL  + + N++  A +  +++V  G KP   T+  L  G     +
Sbjct: 139 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIY 458
             + +    + +   R   PD     A  N L ++GD D A +LL  +  A    +  IY
Sbjct: 199 ASEAVALIDRMVQ--RGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 459 NSLLRTYAK 467
           ++++ +  K
Sbjct: 257 STVIDSLCK 265


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 190/435 (43%), Gaps = 32/435 (7%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI-----KLVS- 107
           S A+ + KW  +   V   +   ++REL     ++ AL+  EWM  Q  +     KL S 
Sbjct: 147 STALLLEKWSHQ--LVGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASI 204

Query: 108 --------GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
                   G   + LD+ ++ +      N +             SA++ +Y ++ +  EA
Sbjct: 205 MISTLGRLGKVEIALDVFNRAQKAGFGNNVY-----------AYSAMVSAYGRSGRCREA 253

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
             + + M + G     + YN +++     G  L K   + +E++K    PD +T+N  +A
Sbjct: 254 LKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIA 313

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
            C+  +  E +++ F E+++  I+ D  +Y+TL     K    E AA+ +  M  +    
Sbjct: 314 VCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISP 373

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YS+++  Y  +G  +E + ++  M     + +   Y  +I    KLG F+ A    
Sbjct: 374 NVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTAC 433

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            + E +    D    N L+ AY  + + + A   ++++  +G+ P   T+  L   Y K 
Sbjct: 434 KDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKA 493

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTE 456
           G  +     F +   +  K  PD  L ++  +   + G ++ A  LL  +  AG   +  
Sbjct: 494 GMHQDATSIFVEFKRAGLK--PDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIV 551

Query: 457 IYNSLLRTYAKAGKM 471
            YNSL+  Y + G++
Sbjct: 552 TYNSLIDAYGRNGQV 566



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 132/284 (46%), Gaps = 3/284 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A + FE +  +   PD  T ++L+    +     +++ +  +M   G  +    YN 
Sbjct: 286 LKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNT 345

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++     GQ++    ++  ++ KN SP+VVTY+  +         E A   + ++K++ 
Sbjct: 346 LIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESG 405

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD +SY+TL  +Y K+   + A T  K+ME+   + + V Y++L+  Y   G   +  
Sbjct: 406 VRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAA 465

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++ KM +     N   Y+ +I +  K G  + A +I+ E++      D  + + L+ + 
Sbjct: 466 GLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSC 525

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                +E A      +   GI+P   T+  L   Y + GQ++ V
Sbjct: 526 CKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNV 569



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 3/228 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K   +  A +   ++  K   P+  T S ++  Y +     EA  L   M 
Sbjct: 343 YNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMK 402

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           E G     + YN ++++Y   G+ D      +++++     DVVTYN  + A   Q   +
Sbjct: 403 ESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYK 462

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F ++K   + P+ ++YS L   Y K  + + A +   E ++   + + V YSSL+
Sbjct: 463 DAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLI 522

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
                 G  ++ + + ++M     + N   Y  +I +  + G+ +  E
Sbjct: 523 DSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVE 570



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 39/272 (14%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A   F   +K     +  +YS + S Y +     +A    + M+K  C+ N + Y+++
Sbjct: 216 EIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTI 275

Query: 286 LSLYTNMGYK-DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +      G    + L I+++M     + +   +  +I+   +   +E ++ ++ E +   
Sbjct: 276 IDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRG 335

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N L+ A     Q+E+A S  + +  K I P   T+  +  GY K G      
Sbjct: 336 IEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLG------ 389

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
            CF++AIG               Y+ ++E G                 VS   YN+L+  
Sbjct: 390 -CFEEAIG--------------LYHDMKESG------------VRPDRVS---YNTLIDI 419

Query: 465 YAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           YAK G+    L   + M++  ++ D  T   L
Sbjct: 420 YAKLGRFDDALTACKDMERVGLKADVVTYNAL 451



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 11/235 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           KE G    +   N ++    KL R+  AL  C+ ME +  +K     Y   +D   K   
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDME-RVGLKADVVTYNALIDAYGKQGK 460

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              A   F+ +  +   P+  T SAL+ +Y +     +A ++  +    G     + Y+ 
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA--SQNDKETAEKAFLEL-- 235
           +++     G ++    +LQE+ +    P++VTYN  + A     Q D   A K  + +  
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINV 580

Query: 236 -KKTKIDPDWISYSTLTSLYIKMELPE--KAATTLKEMEKRTCRKNRVAYSSLLS 287
             K       I   TLTS     +      A +   EM++   + N V +S++L+
Sbjct: 581 FNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILN 635


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 176/396 (44%), Gaps = 7/396 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGF 171
           + ++ ++  +  A+N FE   ++  G      SAL+ +Y ++    EA  + E M   G 
Sbjct: 192 ISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGL 251

Query: 172 LKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
               + YN +++     G   ++  ++  E+ +N   PD +T+N  LA C      E A 
Sbjct: 252 KPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAAR 311

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F E+    I+ D  +Y+TL     K    + A   + EM ++    N V YS+++  Y
Sbjct: 312 NLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGY 371

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  DE L ++ +M      ++   Y  ++S   KLG FE+A N+  E ES     D 
Sbjct: 372 AKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDA 431

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N LL  Y  + + E  +  +  +  + I P   T+  L   Y K G  ++ +E F++
Sbjct: 432 VTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFRE 491

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
              +  K   D  L +A  + L + G ++ A   L  +   G   +   YNS++  + ++
Sbjct: 492 FKKAGLK--ADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRS 549

Query: 469 GKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSE 504
           G    +I    + +  +M + + KV++  +E  V +
Sbjct: 550 GSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGD 585


>gi|12321886|gb|AAG50982.1|AC073395_24 hypothetical protein, 3' partial; 101251-102939 [Arabidopsis
           thaliana]
          Length = 532

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 158/331 (47%), Gaps = 45/331 (13%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  IV +LR   R + ALEV +WM ++  +  +  D++    L  K+  L  AE FFE++
Sbjct: 76  LRGIVEKLRSSNRPRQALEVSDWM-VEQKMYNLPEDFSARFHLTEKVLNLEEAEKFFESI 134

Query: 134 PDKMRGPDTCSALLHSYVQN---KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           P+ MR     ++LL SY +    K   +AE++ +KM + G L  P PYN M +LY S G 
Sbjct: 135 PENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLGN 194

Query: 191 LDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            DKV ++L+E+K+N    D VT N  L   A+ +D  T +K FL  +K     D ++   
Sbjct: 195 RDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVATMDK-FLADRKEITRLDGLTMLA 253

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +   Y++                                    G  ++V R+W K  +  
Sbjct: 254 MAKAYVR-----------------------------------DGEIEDVHRVWDKYKATR 278

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENI-YDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
            K N+ E+  +I SL+KLG+ + AE I Y+EWE      D R+P++L++ Y  +  +  A
Sbjct: 279 QKDNE-EFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKGMVMKA 337

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           +   N+  T  I+   T   LL     KKG 
Sbjct: 338 DKLVNK--TLWIRGLATPITLLLEEMDKKGN 366



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116
           + + +  ++G+ V    L  +++ LR   +   ALE   WM  +    L S DYA  L L
Sbjct: 356 LLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFNLFSEDYATRLHL 415

Query: 117 ISKIRGLSSAENFFE-NLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKC 174
             K+ GL  AENFFE ++P+ M+       LL  Y ++  + ++AEA+ EKM E G    
Sbjct: 416 TEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAVFEKMRELGLQSK 475

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
             P+N +++LY   G+L  V  +L ++K KN  PD+VT N  L A A
Sbjct: 476 LSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANA 522


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 189/426 (44%), Gaps = 19/426 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E  +   ++ +L + ++M+ Q   K     Y + + L+ +   L      F+ +P  
Sbjct: 106 VFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSN 165

Query: 137 --MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
              R     +A++++Y +N +   +  L+  M +       L YN ++N   + G LD  
Sbjct: 166 GVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLDWE 224

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +  E++ +   PDV+TYN  L ACA +   + AE  F  + ++ I PD  +YS L 
Sbjct: 225 GLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLV 284

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   EK +  L+EME      +  +Y+ LL  Y  +G   E + ++++M +    
Sbjct: 285 QTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCV 344

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N A Y+ +++   K G ++   +I+ E +  +   D    NIL+  +      +   + 
Sbjct: 345 ANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTL 404

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAA 427
           ++ +V + ++P   T+E L +   K G  E     +L   +K I      VP  +  T  
Sbjct: 405 FHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGI------VPSSKAYTGV 458

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNV 484
                +    + A  +  T+   G   T E YNS +  +A+ G  K    I+ RM +  +
Sbjct: 459 IEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGL 518

Query: 485 QMDAET 490
           + D  +
Sbjct: 519 KRDVHS 524



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           NLPD      + + LL +Y +     EA  +  +M   G +     Y+ +LNLY  +G+ 
Sbjct: 308 NLPDIT----SYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRY 363

Query: 192 DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           D V  +  E+K  NT PD  TYN+ +         +     F ++ +  ++P+  +Y  L
Sbjct: 364 DDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGL 423

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
                K  L E A   L  M ++    +  AY+ ++  +      +E L ++  M  + +
Sbjct: 424 IFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGS 483

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
                 Y   I +  + G +++AE I           D    N ++ A+    Q E A  
Sbjct: 484 NPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVK 543

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS-VRKWVPDHRLITAAYN 429
            Y  +     +P   T E++   Y   G +++  E F++   S +   V  + L+ A Y 
Sbjct: 544 SYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYA 603

Query: 430 KLEEQGDIDGAEHLLVTLR 448
           K +   D       ++T+R
Sbjct: 604 KNDRLNDAYNLIDEMITMR 622



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 141/349 (40%), Gaps = 4/349 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A +  R   E G        + +V+   KL R +   E+   ME   ++  ++  Y V L
Sbjct: 261 AEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDIT-SYNVLL 319

Query: 115 DLISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           +  +++  +  A + F  +     +    T S LL+ Y ++ +  +   +  +M      
Sbjct: 320 EAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTD 379

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                YN ++ ++   G   +V  +  ++ ++N  P++ TY   + AC      E A+K 
Sbjct: 380 PDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKI 439

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            L + +  I P   +Y+ +   + +  L E+A      M +         Y+S +  +  
Sbjct: 440 LLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFAR 499

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   E   I  +M     K +   +  VI +  + G++E+A   Y E E  +   +   
Sbjct: 500 GGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELT 559

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             ++L+ Y +   ++ +E  +  +   GI P    + L+   Y K  ++
Sbjct: 560 LEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRL 608


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 146/332 (43%), Gaps = 8/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQE 200
           + LL      +++ EA  L+  M +     C    + YN ++N + + GQ+DK   +  E
Sbjct: 159 NTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLE 218

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +    SPDVVTYN  +       + + AE  F ++ +  + P+ ++Y+T+     K +  
Sbjct: 219 M--GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEV 276

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    ++M  +  + + V Y++++         D    ++++M+    K +   Y  +
Sbjct: 277 DMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTI 336

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L K    +KAE ++ +        D     I++        ++ AE  + +++ KG+
Sbjct: 337 IDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP   T+  L  GYL  GQ E+V++  K+   S     PD        + L + G  + A
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEM--SAHDLEPDVFTYGLLLDYLCKNGKCNEA 454

Query: 441 EHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
             L  ++ R     S  IY  +L  Y K G +
Sbjct: 455 RSLFDSMIRKGIKPSVTIYGIMLHGYGKKGAL 486



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 150/348 (43%), Gaps = 6/348 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + ++    + ++   AE + ++M E G     + YN +++      ++D    +
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            Q++  K   P  VTYN  +         + AE  F ++    + PD ++Y+T+     K
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  +KA    ++M  +  + + + Y+ ++         D    ++++M+    K N+  
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y C+I   +  G++E+      E  +     D     +LL       +   A S ++ ++
Sbjct: 403 YNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            KGIKP  T + ++  GY KKG + ++ +     + +     P+HR+         ++  
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVAN--GISPNHRIFNTVICAYAKRAM 520

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDN 483
           ID   H+ + ++  G     + Y +L+    K G++   +++  Q  N
Sbjct: 521 IDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMIN 568



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 173/422 (40%), Gaps = 15/422 (3%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
             +K  ++G        N I+  L K +    A  V + M +   +K     Y   +D +
Sbjct: 282 VFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM-IDRGVKPDHVTYNTIIDGL 340

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K + +  AE  F+ + DK   PD  T + ++    + +    AE + ++M + G     
Sbjct: 341 CKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNN 400

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN +++ Y+S GQ ++V Q ++E+   +  PDV TY L L           A   F  
Sbjct: 401 GTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDS 460

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           + +  I P    Y  +   Y K     +    L  M       N   +++++  Y     
Sbjct: 461 MIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAM 520

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            DEV+ I+ KM       N   Y  +I +L KLG  + A   +++  +   T +  V N 
Sbjct: 521 IDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNS 580

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+      ++ E  E  +  ++ +GI+P    +  +     K+G++ +        +   
Sbjct: 581 LVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG 640

Query: 415 RKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            K  PD      +YN L +       +D A  LL  + +AG     + YN+LL  Y KAG
Sbjct: 641 LK--PD----VISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAG 694

Query: 470 KM 471
           ++
Sbjct: 695 RI 696



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 151/377 (40%), Gaps = 42/377 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYV---------------- 151
           Y + +D + K + +  AE  F+ + DK   P+  T + L+H Y+                
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS 427

Query: 152 -------------------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                              +N K  EA +L + M   G       Y  ML+ Y   G L 
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALS 487

Query: 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           ++  +L  +  N  SP+   +N  + A A +   +     F+++K+  + P+ ++Y TL 
Sbjct: 488 EMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLI 547

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K+   + A     +M       N V ++SL+     +   ++V  ++ +M++   +
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   +  V+ +L K G   +A  + D    +    D    N L+  +   ++++ A   
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNK 430
            + +V+ G+KP   ++  L  GY K G+++     F++ +   RK V P         N 
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML---RKGVTPGVETYNTILNG 724

Query: 431 LEEQGDIDGAEHLLVTL 447
           L   G    A  L V +
Sbjct: 725 LFRSGRFSEARELYVNM 741



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/392 (19%), Positives = 154/392 (39%), Gaps = 45/392 (11%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK-VPQMLQELK 202
           + ++ +Y +     E   +  KM + G     + Y  +++     G++D  V Q  Q + 
Sbjct: 509 NTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMIN 568

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI---------------------- 240
           +  +P+ V +N  +    + +  E  E+ FLE+    I                      
Sbjct: 569 EGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVME 628

Query: 241 -------------DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
                         PD ISY+TL   +      ++A   L  M     + N V+Y++LL 
Sbjct: 629 ARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLH 688

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y   G  D    ++++M+          Y  +++ L + G F +A  +Y          
Sbjct: 689 GYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLW 748

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                +I+L  +   N  + A   +  L +  ++    T+ ++  G  K G+ E  ++ F
Sbjct: 749 SICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLF 808

Query: 408 KK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 464
               A G V   V  +RLI      L E+G ++  + L   +  +G   ++ + N+L+R 
Sbjct: 809 AAIPANGLVPSVVT-YRLIA---ENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRK 864

Query: 465 YAKAGKMPL--IIVERMQKDNVQMDAETQKVL 494
               G++P     + ++ + N  ++A T  +L
Sbjct: 865 LLDRGEIPRAGAYLSKLDEKNFSLEASTTSML 896



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 116/298 (38%), Gaps = 40/298 (13%)

Query: 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT--KIDPDWISYS 248
           + +  +ML++     +PD  TY++ +         E    AF  + KT  ++D D +   
Sbjct: 66  VSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVD-DIVVNQ 124

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-- 306
            L  L     + E     L++M +  CR   V+Y++LL    +    +E   +   M+  
Sbjct: 125 LLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDG 184

Query: 307 -----------------------------SLFAKM----NDAEYTCVISSLVKLGEFEKA 333
                                        SLF +M    +   Y  +I  L K  E ++A
Sbjct: 185 QDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRA 244

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           E+++ +        +    N ++       +++MAE  + ++V KG+KP   T+  +  G
Sbjct: 245 EDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDG 304

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
             K   +++    F++ I   R   PDH       + L +   ID AE +   + + G
Sbjct: 305 LCKAQAVDRAEGVFQQMID--RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 185/435 (42%), Gaps = 29/435 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           EL   V+ L +  ++K ALEV EW+      KL     A  L ++     L +A   FE+
Sbjct: 4   ELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFES 63

Query: 133 L-PDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           L  D+    D    ++L+    + ++  E   L E M   G     + YN ML+LY   G
Sbjct: 64  LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRG 123

Query: 190 Q-LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
              D++  + QE+K    SPD  TYN  + AC   +  + A + F E+K+    P+ ++Y
Sbjct: 124 DSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTY 183

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L  +Y K  + ++A+  L EME      N V Y+ L++ Y   G  DE   + K ++S
Sbjct: 184 NALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 243

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                ++  Y  +IS+  +   +EKA   + E    + T +    NIL+  Y    +L+ 
Sbjct: 244 KGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDD 303

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
               +  +  K   P   TW  L   +   G + +V   F++             +  A 
Sbjct: 304 MMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFRE-------------MKRAG 350

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQ 485
           Y        +D    L+      G+V  S +IY  LLRT    G  P +        ++ 
Sbjct: 351 Y-----MPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT----GLQPTVPTFAALMASLA 401

Query: 486 MDAETQKVLKITSEM 500
            +   Q+  K++ EM
Sbjct: 402 REGRWQQCEKVSQEM 416



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 37/232 (15%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+ S  +  +  + E + ++M+E G       +  +++ Y ++GQ  ++ + + EL
Sbjct: 392 TFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDEL 451

Query: 202 KKNT-------------------------------------SPDVVTYNLWLAACASQND 224
           +K+                                      SPD+  +N  ++ CA +  
Sbjct: 452 EKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGW 511

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            E A K   E++K ++ PD ++Y+ L S+Y +  +  KA   + EM +     N + Y++
Sbjct: 512 IERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNT 571

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           LL  YT  G  D+  R++  M++   + ++  +  ++ S   LG +++A ++
Sbjct: 572 LLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 623



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 40/336 (11%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKA 231
           + YN ++++Y   G+++K+  M++  K    KN +PD+VT+N  L +  +          
Sbjct: 286 VTYNILIDIY---GRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNV 342

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F E+K+    P   +++ L   Y +    + +    K + +   +     +++L++    
Sbjct: 343 FREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAR 402

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   +  ++ ++M     +++DA +  +I S    G+F +     DE E    +    +
Sbjct: 403 EGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEK---SAKQPL 459

Query: 352 PNILLAAYI---------NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME- 401
             IL   ++         N  QL +     N+L   G  P    +  +     K+G +E 
Sbjct: 460 SGILCKTFVLAYCKCCMDNEAQLAL-----NQLYDNGHSPDIKVFNAMISMCAKRGWIER 514

Query: 402 --KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-Y 458
             K+LE  +KA     +  PD        +    +G    AE ++  +R AG     I Y
Sbjct: 515 AVKLLEEIRKA-----QLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITY 569

Query: 459 NSLLRTYAKAGKMP-------LIIVERMQKDNVQMD 487
           N+LL +Y K G+M         ++  R++ DN   +
Sbjct: 570 NTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFN 605



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/368 (17%), Positives = 140/368 (38%), Gaps = 42/368 (11%)

Query: 77  IVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135
           ++    + +RY+ ALE   E  +      +V+  Y + +D+  ++  L      F+ + +
Sbjct: 256 LISAFNRAERYEKALETFTEMRKTNCTPNIVT--YNILIDIYGRMEKLDDMMKVFKFMQE 313

Query: 136 KMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           K   PD  T ++LL S+       E   +  +M   G++     +N ++  Y   G +D 
Sbjct: 314 KNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDY 373

Query: 194 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA--------------------- 231
              + + L +    P V T+   +A+ A +   +  EK                      
Sbjct: 374 SVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIH 433

Query: 232 -------FLELKK--------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                  F +L+K         K     I   T    Y K  +  +A   L ++      
Sbjct: 434 SYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHS 493

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +   +++++S+    G+ +  +++ +++     K +   Y C++S   + G + KAE +
Sbjct: 494 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEV 553

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             E        +    N LL +Y    +++ A   +  +V   ++P   T+  L   Y  
Sbjct: 554 MSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSS 613

Query: 397 KGQMEKVL 404
            G  ++ L
Sbjct: 614 LGLYKEAL 621


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 203/472 (43%), Gaps = 41/472 (8%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI-----KLVS- 107
           S A+ + KW  +   V   +   ++REL     ++ AL+  EWM  Q  +     KL S 
Sbjct: 148 STALLLEKWSHQ--LVGLEDFPYLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASI 205

Query: 108 --------GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159
                   G   + LD+ ++ +      N +             SA++ +Y ++ +  EA
Sbjct: 206 MISTLGRLGKVEIALDVFNRAQKAGFGNNVY-----------AYSAMVSAYGRSGRCREA 254

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
             + + M + G     + YN +++     G  L +   +  E++K    PD +T+N  +A
Sbjct: 255 LKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIA 314

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
            C+     E +++ F E+++  I+ D  +++TL     K    E AA+ +  M  +    
Sbjct: 315 VCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISP 374

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YS+++  Y  +G  +E + ++  M     + +   Y  +I    KLG F+ A    
Sbjct: 375 NVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIAC 434

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            + E +    D    N L+ AY  + + + A   ++++  +G+ P   T+  L   Y K 
Sbjct: 435 KDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKA 494

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTE 456
           G  + V   F +   +  K  PD  L ++  +   + G ++ A  LL  +  AG   +  
Sbjct: 495 GMHQDVSNVFTEFKRAGLK--PDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIV 552

Query: 457 IYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKV----LKITSEMPVSE 504
            YNSL+  Y + G+      ++++     M    QK+    +++  + P S+
Sbjct: 553 TYNSLIDAYGRYGQ-----ADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQ 599


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 185/435 (42%), Gaps = 29/435 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           EL   V+ L +  ++K ALEV EW+      KL     A  L ++     L +A   FE+
Sbjct: 143 ELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFES 202

Query: 133 L-PDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           L  D+    D    ++L+    + ++  E   L E M   G     + YN ML+LY   G
Sbjct: 203 LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRG 262

Query: 190 QL-DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
              D++  + QE+K    SPD  TYN  + AC   +  + A + F E+K+    P+ ++Y
Sbjct: 263 DSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTY 322

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L  +Y K  + ++A+  L EME      N V Y+ L++ Y   G  DE   + K ++S
Sbjct: 323 NALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 382

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                ++  Y  +IS+  +   +EKA   + E    + T +    NIL+  Y    +L+ 
Sbjct: 383 KGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDD 442

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
               +  +  K   P   TW  L   +   G + +V   F++             +  A 
Sbjct: 443 MMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFRE-------------MKRAG 489

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQ 485
           Y        +D    L+      G+V  S +IY  LLRT    G  P +        ++ 
Sbjct: 490 Y-----MPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT----GLQPTVPTFAALMASLA 540

Query: 486 MDAETQKVLKITSEM 500
            +   Q+  K++ EM
Sbjct: 541 REGRWQQCEKVSQEM 555



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 141 DTCSA-LLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLYISNGQLDKVPQ 196
           D C A L+HSY  + +  +    ++++ +    K PL        +  Y   G  ++   
Sbjct: 564 DACHAGLIHSYANSGQFFQLRKYIDELEKSA--KQPLSGILCKTFVLAYCKCGMDNEAQL 621

Query: 197 MLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            L +L  N  SPD+  +N  ++ CA +   E A K   E++K ++ PD ++Y+ L S+Y 
Sbjct: 622 ALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYG 681

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +  +  KA   + EM +     N + Y++LL  YT  G  D+  R++  M++   + ++ 
Sbjct: 682 REGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNF 741

Query: 316 EYTCVISSLVKLGEFEKAENI 336
            +  ++ S   LG +++A ++
Sbjct: 742 TFNTLVGSYSSLGLYKEALSV 762



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 139/330 (42%), Gaps = 32/330 (9%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
           YN ++++Y   G+++K+  M++  K    KN +PD+VT+N  L +  +          F 
Sbjct: 427 YNILIDIY---GRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFR 483

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+K+    P   +++ L   Y +    + +    K + +   +     +++L++     G
Sbjct: 484 EMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREG 543

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE-----SISGTGD 348
              +  ++ ++M     +++DA +  +I S    G+F +     DE E      +SG   
Sbjct: 544 RWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGI-- 601

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLE 405
             +    + AY        A+   N+L   G  P    +  +     K+G +E   K+LE
Sbjct: 602 --LCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLE 659

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +KA     +  PD        +    +G    AE ++  +R AG     I YN+LL +
Sbjct: 660 EIRKA-----QLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYS 714

Query: 465 YAKAGKMP-------LIIVERMQKDNVQMD 487
           Y K G+M         ++  R++ DN   +
Sbjct: 715 YTKHGRMDDAARVFGDMVAARVRPDNFTFN 744



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 4/256 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+ S  +  +  + E + ++M+E G       +  +++ Y ++GQ  ++ + + EL
Sbjct: 531 TFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDEL 590

Query: 202 KKNTS---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           +K+       ++     LA C    D E A+ A  +L      PD   ++ + S+  K  
Sbjct: 591 EKSAKQPLSGILCKTFVLAYCKCGMDNE-AQLALNQLYDNGHSPDIKVFNAMISMCAKRG 649

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E+A   L+E+ K   + + V Y+ L+S+Y   G   +   +  +M       N   Y 
Sbjct: 650 WIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYN 709

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++ S  K G  + A  ++ +  +     D    N L+ +Y +    + A S    +   
Sbjct: 710 TLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEH 769

Query: 379 GIKPCYTTWELLTWGY 394
           G +P   T++ L  GY
Sbjct: 770 GCQPTQITFKALLDGY 785



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/368 (17%), Positives = 140/368 (38%), Gaps = 42/368 (11%)

Query: 77  IVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135
           ++    + +RY+ ALE   E  +      +V+  Y + +D+  ++  L      F+ + +
Sbjct: 395 LISAFNRAERYEKALETFTEMRKTNCTPNIVT--YNILIDIYGRMEKLDDMMKVFKFMQE 452

Query: 136 KMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           K   PD  T ++LL S+       E   +  +M   G++     +N ++  Y   G +D 
Sbjct: 453 KNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDY 512

Query: 194 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA--------------------- 231
              + + L +    P V T+   +A+ A +   +  EK                      
Sbjct: 513 SVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIH 572

Query: 232 -------FLELKK--------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                  F +L+K         K     I   T    Y K  +  +A   L ++      
Sbjct: 573 SYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHS 632

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +   +++++S+    G+ +  +++ +++     K +   Y C++S   + G + KAE +
Sbjct: 633 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEV 692

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             E        +    N LL +Y    +++ A   +  +V   ++P   T+  L   Y  
Sbjct: 693 MSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSS 752

Query: 397 KGQMEKVL 404
            G  ++ L
Sbjct: 753 LGLYKEAL 760


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 177/377 (46%), Gaps = 33/377 (8%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSE 168
           AV ++++ K   +S A +   NL      PD    ++L+ + V N +  EA  + +KM E
Sbjct: 2   AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 169 CGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
            G     + YN +LN+Y   G   +K+  + + +K     PD  TYN  +  C   +  E
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F ++K     PD ++Y+TL  +Y K    ++A   L+EME   C  + V Y+SL+
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S Y   G  +E + +  +M+    K++   YT ++S  V+ G+ E A  +++E  +    
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 347 GDPRVPNILLAAYINRNQL-EMAESFYNRLVTKGIKPCYTTWELLTWGYL-----KKGQM 400
            +    N L+  + NR +  EM + F      + IK C    +++TW  L     + G  
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVF------EEIKICCCVPDIVTWNTLLAVFGQNGMD 295

Query: 401 EKVLECFK--KAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---H 452
            +V   FK  K +G    +VP+   +  + +AY++    G  D A  +   + + G    
Sbjct: 296 SEVSGVFKEMKRVG----FVPERDTYNTLISAYSRC---GSFDQAMAMYKRMLDTGITPD 348

Query: 453 VSTEIYNSLLRTYAKAG 469
           +ST  YN++L   A+ G
Sbjct: 349 LST--YNAVLAALARGG 363



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 164/358 (45%), Gaps = 10/358 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           AA  +    ++G     Y    ++       RY+ A+ V + ME +   K     Y V L
Sbjct: 17  AASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME-EEGCKPTLITYNVIL 75

Query: 115 DLISKIRGL--SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           ++  K+ G+  +     FE + +    PD  T + L+    +     EA A+ E M   G
Sbjct: 76  NVYGKM-GMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMG 134

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
           F+   + YN +L++Y  + ++ +  ++L+E++ N  SP +VTYN  ++A A     E A 
Sbjct: 135 FVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAM 194

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +   ++ +  I  D  +Y+ + S +++    E A    +EM    C+ N   +++L+ ++
Sbjct: 195 ELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMH 254

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            N G   E++++++++       +   +  +++   + G   +   ++ E + +    + 
Sbjct: 255 GNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPER 314

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVL 404
              N L++AY      + A + Y R++  GI P  +T+  +     + G   Q EK+L
Sbjct: 315 DTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKIL 372



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 181/412 (43%), Gaps = 11/412 (2%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIR 121
           K  G    +Y  N ++   R+   Y+ A  V E M+ + +    V+  Y   LD+  K R
Sbjct: 96  KNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVT--YNTLLDVYGKSR 153

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
            +  A      +      P   T ++L+ +Y ++    EA  L  +M E G       Y 
Sbjct: 154 RIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYT 213

Query: 180 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            ML+ ++  G+ +   ++ +E++     P++ T+N  +    ++       K F E+K  
Sbjct: 214 AMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKIC 273

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD ++++TL +++ +  +  + +   KEM++      R  Y++L+S Y+  G  D+ 
Sbjct: 274 CCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQA 333

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           + ++K+M+      + + Y  V+++L + G +E++E I  E +      +      LL A
Sbjct: 334 MAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHA 393

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-W 417
           Y N  ++    +    + +  I+P     + L    L   + + +LE  +  +   RK +
Sbjct: 394 YANGKEIGRMLALAEEICSGVIEPHAVLLKTLV---LVNSKCDLLLEAERAFLELKRKGF 450

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKA 468
            PD   + A       +  +     +L  ++ +G   S   YNSL+  ++++
Sbjct: 451 SPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQS 502



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 3/194 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           SK   L  AE  F  L  K   PD  T +A++  Y + +   +   ++  M E GF    
Sbjct: 430 SKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSL 489

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++ ++  +   ++  ++L+E L K   PD+++YN  + A       + A   F E
Sbjct: 490 ATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSE 549

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++++ + PD I+Y+T  + Y    + E+A   +  M K  C+ N+  Y+S++  Y  +  
Sbjct: 550 MRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNR 609

Query: 295 KDEVLRIWKKMMSL 308
           +D+ ++    +  L
Sbjct: 610 RDDAIKFISSLHEL 623



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/467 (19%), Positives = 183/467 (39%), Gaps = 56/467 (11%)

Query: 49  VYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIK 104
           VY K    + A   +R+ +  G +      N ++    +    + A+E+   M ++  IK
Sbjct: 148 VYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQM-VERGIK 206

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEAL 162
           L    Y   L    +     SA   FE +      P+ C+  AL+  +    K AE   +
Sbjct: 207 LDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKV 266

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
            E++  C  +   + +N +L ++  NG   +V  + +E+K+    P+  TYN  ++A + 
Sbjct: 267 FEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSR 326

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A   +  +  T I PD  +Y+ + +   +  L E++   L EM+   C+ N + 
Sbjct: 327 CGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELT 386

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           + SLL  Y N      +L + +++ S   + +      ++    K     +AE  + E +
Sbjct: 387 HCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELK 446

Query: 342 SISGTGDPRVPNILLAAYINRN-----------------------------------QLE 366
               + D    N ++A Y  R                                      E
Sbjct: 447 RKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFE 506

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRL 423
            +E     ++ KGIKP   ++  + + Y + G+M++    F +   S    +PD   +  
Sbjct: 507 RSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRES--GLIPDVITYNT 564

Query: 424 ITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
             A+Y   +  EE  D+     +   +++    +   YNS++  Y K
Sbjct: 565 FVASYAADSMFEEAIDV-----VCYMIKHGCKPNQNTYNSVIDGYCK 606



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 135/316 (42%), Gaps = 13/316 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+      A   ++ + D    PD  T +A+L +  +     ++E ++ +M 
Sbjct: 317 YNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ 376

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           +       L +  +L+ Y +  ++ ++  + +E+      P  V     +   +  +   
Sbjct: 377 DGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLL 436

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE+AFLELK+    PD  + + + ++Y + ++  K    L  M++     +   Y+SL+
Sbjct: 437 EAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLM 496

Query: 287 SLYT---NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
            +++   N    +EVL   K++++   K +   Y  VI +  + G  ++A +I+ E    
Sbjct: 497 YMHSQSENFERSEEVL---KEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRES 553

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D    N  +A+Y   +  E A      ++  G KP   T+  +  GY K  + +  
Sbjct: 554 GLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDA 613

Query: 404 LECFKKAIGSVRKWVP 419
           +    K I S+ +  P
Sbjct: 614 I----KFISSLHELDP 625


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 162/342 (47%), Gaps = 12/342 (3%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSA-ENFFENLPDKMRGPDTCSA 145
           +  ALEV EW+ L++     +   +  L ++ K    + A E F    P         +A
Sbjct: 200 WHRALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVYNA 259

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQELKK 203
           ++  Y +  +  + + L++ M E G     + +N ++N  +  G +  +   ++L E+++
Sbjct: 260 MMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRR 319

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD +TYN  ++AC+  ++ E A K F +++     PD  +Y+ + S+Y +  L  K
Sbjct: 320 SGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGK 379

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     ++E R    + V+Y+SLL  +   G  ++V  IW++M+ +    ++  Y  +I 
Sbjct: 380 AEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIH 439

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G+ E A  +Y + +S     D     +L+ +    N++  A    + ++  G+KP
Sbjct: 440 MYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKP 499

Query: 383 CYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDH 421
              T+  L  GY K G   + E+  +C  ++   +R   PDH
Sbjct: 500 TLKTYSALICGYAKAGKPVEAEETFDCMLRS--GIR---PDH 536



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 122 GLSS-AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           GLS  AE  F +L  +   PD  S  +LL+++ +     + + + E+M + GF K  + Y
Sbjct: 375 GLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTY 434

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N M+++Y   GQ +   Q+ ++++ +  +PD VTY + + +    N    A     E+  
Sbjct: 435 NTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLN 494

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           T + P   +YS L   Y K   P +A  T   M +   R + +AYS +L ++        
Sbjct: 495 TGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKR 554

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
            + ++K+M+     ++ + Y  ++ +L K+ + E    +  + E I G     + +IL+
Sbjct: 555 AMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSILV 613



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 14/315 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+   L  A   F+++      PD  T +A++  Y +   S +AE L   + 
Sbjct: 329 YNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLE 388

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             GF    + YN +L  +   G ++KV ++ +E+ K     D +TYN  +     Q   E
Sbjct: 389 SRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNE 448

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + + +++ +  +PD ++Y+ L     K     +AA  + EM     +     YS+L+
Sbjct: 449 LALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALI 508

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G   E    +  M+    + +   Y+ ++   ++  E ++A  +Y E      T
Sbjct: 509 CGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGIT 568

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  +  ++L      N++E       R++    + C    + ++   L KG      EC
Sbjct: 569 LDHSLYELMLRTLRKVNKVED----IGRVIRDMEEICGMNTQTIS-SILVKG------EC 617

Query: 407 FKKAIGSVRKWVPDH 421
           + +A   +R+ + DH
Sbjct: 618 YDEAAKMLRRAISDH 632



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 114/245 (46%), Gaps = 17/245 (6%)

Query: 152  QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVV 210
            + K+  + EA++ +M E GF      +N +L +Y++     K  Q+ Q +K++   PD  
Sbjct: 930  RGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDED 989

Query: 211  TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
            TYN  +      +  E       E++   ++P   +Y +L + + K +L E+A    +E+
Sbjct: 990  TYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEEL 1049

Query: 271  EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL--- 327
            + + C+ +R  Y +++ +Y N G   +  R       LF+ M DA     I+++  L   
Sbjct: 1050 QSKGCKLDRSFYHTMMKIYRNSGSHSKAER-------LFSMMKDAGVEPTIATMHLLMVS 1102

Query: 328  ----GEFEKAENIYDEWESISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
                G+ ++AE +    +  +G+    +P + ++ AY+      +      ++  +G++P
Sbjct: 1103 YGSSGQPQEAEKVLSNLKE-TGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEP 1161

Query: 383  CYTTW 387
             +  W
Sbjct: 1162 DHRIW 1166



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 143/367 (38%), Gaps = 47/367 (12%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
            +L ++ +     E + +   M   G+      Y  M  L     Q+  V  ML E+++  
Sbjct: 889  MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+  +N  L    +  D     + +  +K+  ++PD  +Y+TL  +Y +   PE+  
Sbjct: 949  FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGF 1008

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            + + EM        RVA                          L  K++   Y  +++S 
Sbjct: 1009 SLMHEM--------RVA-------------------------GLEPKLD--TYKSLVASF 1033

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
             K    E+AE +++E +S     D    + ++  Y N      AE  ++ +   G++P  
Sbjct: 1034 GKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTI 1093

Query: 385  TTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
             T  LL   Y   GQ    EKVL   K+  GS    +P   +I A        GD +   
Sbjct: 1094 ATMHLLMVSYGSSGQPQEAEKVLSNLKET-GSNLSTLPYSSVIDAYL----RNGDYNIGI 1148

Query: 442  HLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMP 501
              L+ ++  G    E  + +   + +A  +     E +   N   DA     +++ +E P
Sbjct: 1149 QKLIQMKKEG---LEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLPIRLLTEKP 1205

Query: 502  VSEVSSI 508
             S VS++
Sbjct: 1206 ESLVSAL 1212


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 176/400 (44%), Gaps = 9/400 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLV--SGDYAVHLDLISKIRGLSSAENFFENLP 134
           IV+ L   K+   AL V EW+  + + +L+      AV + ++ K   +S+A +   NL 
Sbjct: 133 IVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLC 192

Query: 135 DKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL- 191
                 D    ++++ ++  N +  EA  + +KM E G     + YN +LN+Y   G   
Sbjct: 193 KDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPW 252

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           +K+  ++  +K    +PD  TYN  ++ C   N  E A     E+K     PD ++Y+ L
Sbjct: 253 NKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNAL 312

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
             +Y K    ++A   L+EME   C  + V Y+SL+S Y   G  ++ L +  +M+    
Sbjct: 313 LDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGI 372

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
           K +   YT ++S   K G+ + A  I++E  +     +    N L+  + NR +      
Sbjct: 373 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 432

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            +  + T    P   TW  L   + + G   +V   FK+   +   +VP+        + 
Sbjct: 433 VFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISS 490

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
               G  D A  +   +  AG +     YN++L   A+ G
Sbjct: 491 YSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/418 (20%), Positives = 185/418 (44%), Gaps = 13/418 (3%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISK 119
           + K  G     Y  N ++   R+   Y+ A  V + M+L  +    V+  Y   LD+  K
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVT--YNALLDVYGK 318

Query: 120 IRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
            R    A    + +      P   T ++L+ +Y ++    +A  L  +M E G       
Sbjct: 319 SRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFT 378

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  +L+ +   G+     Q+ +E++ +   P++ T+N  +    ++       K F ++K
Sbjct: 379 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIK 438

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
             +  PD ++++TL S++ +  +  + +   KEM++      R  +++L+S Y+  G  D
Sbjct: 439 TFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFD 498

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + + ++K+M+      + + Y  V+++L + G ++++E +  E +      +      LL
Sbjct: 499 QAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLL 558

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
            AY N  ++E   +    + +  I+P     + L    L   + + ++E  ++A   +R+
Sbjct: 559 HAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLV---LVNSKCDLLMET-ERAFLELRQ 614

Query: 417 --WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
             + PD   + A  +    +  +  A  +L  ++  G   S   YNSL+  Y+++   
Sbjct: 615 RGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 36/292 (12%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ SY +     +A A+ ++M E G       YN +L      G   +  ++L E
Sbjct: 482 DTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAE 541

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKE--------------------------------- 226
           +K     P+ +TY   L A A+  + E                                 
Sbjct: 542 MKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDL 601

Query: 227 --TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
               E+AFLEL++    PD  + + + S+Y + ++  KA   L  M++     +   Y+S
Sbjct: 602 LMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNS 661

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+ +Y+     +    I +++++   + +   Y  VI +  + G    A  +  E     
Sbjct: 662 LMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 721

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
              D    N  +A+Y   +    A      ++  G KP  +T+  +   Y K
Sbjct: 722 PAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCK 773



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 1/177 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL 216
           E E    ++ + GF       N M+++Y     + K  ++L  +K+   +P + TYN  +
Sbjct: 604 ETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM 663

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
              +   + E +E+   E+    I PD ISY+T+   Y +      A+  L EM +    
Sbjct: 664 YMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA 723

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
            + + Y++ ++ Y       E + +   M+    K N + Y  ++    KL   ++A
Sbjct: 724 PDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 780



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L++ Y ++     +E ++ ++   G     + YN ++  Y  NG++    ++L E+
Sbjct: 658 TYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEM 717

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +++  +PD++TYN ++A+ A+ +    A      + K    P+  +Y+++   Y K+   
Sbjct: 718 RESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRR 777

Query: 261 EKAATTLKEMEK 272
           ++A+  +  + K
Sbjct: 778 DEASMFVNNLRK 789


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 194/426 (45%), Gaps = 11/426 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           + + + +E      ++ +L + ++M+ Q   K     Y + + L+ +   L      F+ 
Sbjct: 114 DFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDE 173

Query: 133 LPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +  +  +R   + +AL+++Y +N +   +  L+E+M         L YN ++N   + G 
Sbjct: 174 MASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGD 232

Query: 191 LD--KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           LD   +  +  E++ +   PD+VTYN  L+ACA++   + AE  F  + +  I P+  +Y
Sbjct: 233 LDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTY 292

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S +   + K+   EK A  LKEME      +  +Y+ L+  +  +G   E + ++K+M +
Sbjct: 293 SYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N + Y+ +++   K G ++    ++ + +  S   D    NIL+  +      + 
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKE 412

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
             + ++ LV + I P   T+E L +   K G  E   +      G  +  VP  +  +  
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNG--KGIVPSSKAYSGL 470

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNV 484
                +    D A     T+   G  ST + YNSL+ T+A+ G  K    I+ RM++  +
Sbjct: 471 IEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGI 530

Query: 485 QMDAET 490
             +A++
Sbjct: 531 SRNAKS 536



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 4/338 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           IV    KL + +    + + ME +  +  +S  Y V ++  +K+  +  A + F+ +   
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDIS-SYNVLIEAHAKLGSIKEAMDVFKQMQAA 353

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+  T S LL+ Y ++ +  +   L  +M E         YN ++ ++   G   +V
Sbjct: 354 GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             +  +L  +N  P++ TY   + AC      E A+K    +    I P   +YS L   
Sbjct: 414 VTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEA 473

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y +  L ++A      M +   +     Y+SL+  +   G   E   I  +M       N
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRN 533

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              ++ +I    + G++E+A   + E E +    D +    +L  Y     ++ ++  + 
Sbjct: 534 AKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFI 593

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            +   GI P    + ++   Y K G+ +   E   + I
Sbjct: 594 EIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT ++L+H++ +     E EA++ +M E G  +    ++ ++  Y  +GQ ++  +   E
Sbjct: 500 DTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVE 559

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++K     D  T    L         + +++ F+E+K + I P  + Y  + ++Y K   
Sbjct: 560 MEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGR 619

Query: 260 PEKAATTLKEMEK 272
            + A+  L EM K
Sbjct: 620 WDDASELLDEMIK 632


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 194/426 (45%), Gaps = 11/426 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           + + + +E      ++ +L + ++M+ Q   K     Y + + L+ +   L      F+ 
Sbjct: 114 DFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDE 173

Query: 133 LPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +  +  +R   + +AL+++Y +N +   +  L+E+M         L YN ++N   + G 
Sbjct: 174 MASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINA-CARGD 232

Query: 191 LD--KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           LD   +  +  E++ +   PD+VTYN  L+ACA++   + AE  F  + +  I P+  +Y
Sbjct: 233 LDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTY 292

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S +   + K+   EK A  LKEME      +  +Y+ L+  +  +G   E + ++K+M +
Sbjct: 293 SYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N + Y+ +++   K G ++    ++ + +  S   D    NIL+  +      + 
Sbjct: 353 AGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKE 412

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
             + ++ LV + I P   T+E L +   K G  E   +      G  +  VP  +  +  
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNG--KGIVPSSKAYSGL 470

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNV 484
                +    D A     T+   G  ST + YNSL+ T+A+ G  K    I+ RM++  +
Sbjct: 471 IEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGI 530

Query: 485 QMDAET 490
             +A++
Sbjct: 531 SRNAKS 536



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 4/338 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           IV    KL + +    + + ME +  +  +S  Y V ++  +K+  +  A + F+ +   
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDIS-SYNVLIEAHAKLGSIKEAMDVFKQMQAA 353

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+  T S LL+ Y ++ +  +   L  +M E         YN ++ ++   G   +V
Sbjct: 354 GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             +  +L  +N  P++ TY   + AC      E A+K    +    I P   +YS L   
Sbjct: 414 VTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEA 473

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y +  L ++A      M +   +     Y+SL+  +   G   E   I  +M       N
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRN 533

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              ++ +I    + G++E+A   + E E +    D +    +L  Y     ++ ++  + 
Sbjct: 534 AKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFI 593

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            +   GI P    + ++   Y K G+ +   E   + I
Sbjct: 594 EIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT ++L+H++ +     E EA++ +M E G  +    ++ ++  Y  +GQ ++  +   E
Sbjct: 500 DTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVE 559

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++K     D  T    L         + +++ F+E+K + I P  + Y  + ++Y K   
Sbjct: 560 MEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGR 619

Query: 260 PEKAATTLKEMEK 272
            + A+  L EM K
Sbjct: 620 WDDASELLDEMIK 632


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 191/426 (44%), Gaps = 19/426 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E  +   ++ +L + ++M+ Q   K     + + + L+ +   L      F+ +P  
Sbjct: 104 VFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSN 163

Query: 137 --MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
             +R   + +A++++Y +N +   +  L+  M +       L YN ++N   + G LD  
Sbjct: 164 GVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINA-CARGGLDWE 222

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +  E++ +   PDV+TYN  L ACA +   + AE  F  + ++ I PD  +YS L 
Sbjct: 223 GLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLV 282

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   EK +  L+EME      +  +Y+ LL  Y  +G   E + ++++M +    
Sbjct: 283 QTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCV 342

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N A Y+ +++   K G ++   +++ E +  +   D    NIL+  +      +   + 
Sbjct: 343 ANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTL 402

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAA 427
           ++ +  + ++P   T+E L +   K G  E     +L   +K +      VP  +  T  
Sbjct: 403 FHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGV------VPSSKAYTGV 456

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNV 484
                +    + A  +  T+   G   T E YNSL+  +A+ G  K    I+ RM +  +
Sbjct: 457 IEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGL 516

Query: 485 QMDAET 490
           + D  +
Sbjct: 517 KRDVHS 522



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 134/336 (39%), Gaps = 7/336 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A +  R   E G        + +V+   KL R +   E+   ME   ++  ++  Y V L
Sbjct: 259 AEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDIT-SYNVLL 317

Query: 115 DLISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           +  +++  +  A   F  +     +    T S LL+ Y ++ +  +   L  +M      
Sbjct: 318 EAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTD 377

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                YN ++ ++   G   +V  +  ++ ++N  P++ TY   + AC      E A+K 
Sbjct: 378 PDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKI 437

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            L + +  + P   +Y+ +   + +  L E+A      M +         Y+SL+  +  
Sbjct: 438 LLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFAR 497

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   E   I  +M     K +   +  VI +  + G++E+A   Y E E  +   +   
Sbjct: 498 GGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELT 557

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKP---CY 384
              +L+ Y +   ++  E  +  +   GI P   CY
Sbjct: 558 LEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCY 593



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 145/359 (40%), Gaps = 13/359 (3%)

Query: 121 RGLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           RGL   AE  F  + +    PD  T S L+ ++ +  +  +   L+ +M   G L     
Sbjct: 253 RGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITS 312

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +L  Y   G + +   + ++++      +  TY++ L         +     FLE+K
Sbjct: 313 YNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMK 372

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
            +  DPD  +Y+ L  ++ +    ++  T   +M +     N   Y  L+      G  +
Sbjct: 373 VSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYE 432

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +  +I   M       +   YT VI +  +   +E+A  +++    +         N L+
Sbjct: 433 DAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLI 492

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF---KKAIGS 413
            A+      + AE+  +R+   G+K    ++  +   + + GQ E+ ++ +   +KA   
Sbjct: 493 HAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKA--- 549

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
                P+   + A  +     G +D  E     ++ +G + S   Y  +L  YAK  ++
Sbjct: 550 --NCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRL 606



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 106/256 (41%), Gaps = 12/256 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + ++ ++ Q     EA  +   M+E G       YN +++ +   G   +   +L  + +
Sbjct: 454 TGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNE 513

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +    DV ++N  + A       E A K+++E++K   +P+ ++   + S+Y    L ++
Sbjct: 514 SGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDE 573

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                +E++      + + Y  +L+LY     K++ L     ++     M  ++   VI 
Sbjct: 574 GEEQFQEIKASGILPSVMCYCMMLALYA----KNDRLNDAYNLIDAMITMRVSDIHQVIG 629

Query: 323 SLVKLGEFEKAEN------IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
            ++K G+F+   N      ++D+  S       R  N LL A     Q E A    N   
Sbjct: 630 QMIK-GDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEAS 688

Query: 377 TKGIKPCYTTWELLTW 392
            +G+ P       L W
Sbjct: 689 KRGLFPELFRKSKLVW 704


>gi|302798905|ref|XP_002981212.1| hypothetical protein SELMODRAFT_420695 [Selaginella moellendorffii]
 gi|300151266|gb|EFJ17913.1| hypothetical protein SELMODRAFT_420695 [Selaginella moellendorffii]
          Length = 414

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 191/455 (41%), Gaps = 64/455 (14%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           + K  L  ++ +LR   ++  A E+C+WM      ++   D+ + L+L+ +I    +   
Sbjct: 1   MEKKHLLNVIYKLRITAKFGQAREICDWMIRNKVFEIEESDHVLLLELVGRISKFQATRC 60

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           F+E +P ++R  D  +A+L  + +      AE  M +M     +    PYN ML++Y   
Sbjct: 61  FWE-MPAELRSEDAYTAMLQVFARWHAIPAAEDTMSEMKSLNLITRVEPYNIMLDMYKRK 119

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAA---CASQNDKETAEKAFLELKKTKIDPDW 244
            + DKV  M  EL     +PD  TY + L A       +  E   + FL+          
Sbjct: 120 NEDDKVRAMYDELSSLGVAPDAHTYLIVLRAKQKIGGFDGIEAEVRKFLD---------- 169

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
                                     E+ T R+    Y  +L +YT +     +  +   
Sbjct: 170 --------------------------EQLTSRQPLFIYECMLRIYTLLRDLAAIENLRSI 203

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAY 359
           ++  F K + + Y C++ S  +LGE E+AE +++E       G+    NI     ++A Y
Sbjct: 204 LLKTFKKFSSSSYNCLLDSYRQLGEVERAERLFNE------IGNKFTLNIQSYRAMIAVY 257

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-----IGSV 414
            +  ++E A   Y +L   G +     +  +  GY+        L  + KA     +G  
Sbjct: 258 ASNGRMEKANELYKQLFRAGFECHPAIYHAMVAGYIDARDHSNALIQYGKAWDRSLLGHP 317

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
           +   P           L EQGD   AE ++  L+     S  E+YN LL+ Y KA ++P+
Sbjct: 318 K---PLRATTLLVLRVLAEQGDFSRAESIVRDLKRERQGSDVEVYNWLLKAYIKA-EVPV 373

Query: 474 IIVE-RMQKDNVQMDAETQKVLKITSEMPVSEVSS 507
              + RM    V+ + E+ ++L+  + +P  +V S
Sbjct: 374 FGFDGRMLAAGVRPNDESLELLRRIN-LPAKKVES 407


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 177/408 (43%), Gaps = 21/408 (5%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           RL+ L+    SA   +   K +  T+ K  +   +   ++LK++    E+ EW+  Q   
Sbjct: 77  RLMKLIDETGSAVSVLNSEKMKNQTIPKALVVGTLMRFKQLKKWNLVAEILEWLRAQNWW 136

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEA 161
                D+ + +    K+   + AE     +      P+  S  AL+ +Y +  +   AEA
Sbjct: 137 DFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEA 196

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLWLA 217
           +  +M   G       Y  +L  ++   +  +  ++  +L    K    PD   +N+ + 
Sbjct: 197 IFRRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIY 256

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   E A + F  + +  I    ++Y++L S     +   + +    +M++   R 
Sbjct: 257 MYKKSGSHEKARQTFALMAERGIKKATVTYNSLMSFETNYK---EVSNIYDQMQRADLRP 313

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V+Y+ L++ Y     ++E L ++++M+    +     Y  ++ +    G  E+A  ++
Sbjct: 314 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVF 373

Query: 338 DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
                 S   D  +P++     +L+AY+N   +E AE F+ RL+  G +P   T+  L  
Sbjct: 374 K-----SMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIK 428

Query: 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           GY K   +EKV+E +++ +G  R    +  ++T   +   + GD D A
Sbjct: 429 GYAKANDIEKVMEKYEEMLG--RGIKANQTILTTIMDAHGKNGDFDSA 474



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/278 (18%), Positives = 113/278 (40%), Gaps = 7/278 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALME 164
           Y + L    +      AE  F+ L +  + P        + +++ Y ++    +A     
Sbjct: 213 YQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFA 272

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224
            M+E G  K  + YN +++   +  ++  +   +Q  + +  PDVV+Y L + A      
Sbjct: 273 LMAERGIKKATVTYNSLMSFETNYKEVSNIYDQMQ--RADLRPDVVSYALLINAYGKARR 330

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
           +E A   F E+    + P   +Y+ L   +    + E+A    K M +     +  +Y++
Sbjct: 331 EEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTT 390

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +LS Y N    +   + +K+++    + N   Y  +I    K  + EK    Y+E     
Sbjct: 391 MLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRG 450

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              +  +   ++ A+      + A +++  +   G+ P
Sbjct: 451 IKANQTILTTIMDAHGKNGDFDSAVNWFKEMALNGLLP 488


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/436 (20%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           RR+++ +    SA   +   K     + K  +   +   ++LK++   +E+ EW+  Q  
Sbjct: 72  RRIMTEIEESGSAVSVLSAEKINNQNIPKDLVVGTLIRFKQLKKWNLVVEILEWLRTQNW 131

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
                 D+ + +    K+   + AE     +      P+  S  AL+ +Y +  +   AE
Sbjct: 132 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAE 191

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS----PDVVTYNLWL 216
           A+  +M + G       Y  +L  ++   +  +  ++   L  + +    PD   +N+ +
Sbjct: 192 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMI 251

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                    E A K F ++ +  I    ++Y++L S     +   + +    +M++   R
Sbjct: 252 YMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYK---EVSNIYDQMQRADLR 308

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + V+Y+ L+S Y     ++E L ++++M+    +     Y  ++ +    G  E+A+ +
Sbjct: 309 PDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTV 368

Query: 337 YDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           +      S   D   P++     +L+AYIN + +E AE F+ RL+  G +P   T+  L 
Sbjct: 369 FK-----SMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLI 423

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
            GY K   +E V++ +++ +  +R    +  ++T   +   + GD D A H    + + G
Sbjct: 424 KGYAKINDLEMVMKKYEEML--MRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNG 481

Query: 452 HVSTEIYNSLLRTYAK 467
               +   ++L + AK
Sbjct: 482 IPPDQKAKNVLLSLAK 497


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 193/448 (43%), Gaps = 48/448 (10%)

Query: 71  KYELNRI-----VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           KYEL ++     ++ L     ++ AL + EW  L   I     D    ++L+ +I G  S
Sbjct: 143 KYELLQVDLISLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHA-IELMVRILGRES 201

Query: 126 ----AENFFENLP--DKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
               A   F+ +P  D +      + +LH+Y +  K   A  + E+M+E G     + YN
Sbjct: 202 QHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYN 261

Query: 180 HMLNLYISNGQ-LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            ML++Y   G+  DK+ ++L E++ +    D  T +  L+AC  +   + A + F  LK 
Sbjct: 262 VMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKS 321

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P  ++Y+ L  ++ K  +  +A + L EME+  C  + V Y+ +++ Y   G+ +E
Sbjct: 322 EGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEE 381

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              +   M S     N   YT +I++  ++G+ +KA  ++D+   +    +    N +L 
Sbjct: 382 GAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLG 441

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA------- 410
               ++  E        +   G  P + TW  +     KKG  + V + F++        
Sbjct: 442 MLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEP 501

Query: 411 --------------IGSVRKWVPDH-RLITAAY-----------NKLEEQGDIDGAEHLL 444
                          GS       H  +I A +           N L  +GD   AE ++
Sbjct: 502 DRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVI 561

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           + +RN G   +E  Y+ ++ +YAK G +
Sbjct: 562 LDMRNKGFRPSETSYSLMVHSYAKGGNV 589



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/271 (18%), Positives = 109/271 (40%), Gaps = 5/271 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD+    DT + L+ +Y +   + +A  + E+M + GF  C   YN +LN     G    
Sbjct: 501 PDR----DTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKA 556

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ +++ K   P   +Y+L + + A   + +  E     +    I P W+   TL  
Sbjct: 557 AESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVL 616

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K           + ++K   + + V  +S+LS++      D    + + +     + 
Sbjct: 617 ANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQP 676

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   +  ++    + G+  KAE +    ++  G  D    N ++  +  +  ++      
Sbjct: 677 DLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRIL 736

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           + + + G+ PC  T+     GY  +G   ++
Sbjct: 737 SEMTSIGVGPCIFTYNTFISGYAAQGMFTEI 767



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)

Query: 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           +++  Q LQ  K    PD+V  N  L+  A  N  + A +    +    + PD +++++L
Sbjct: 627 MERAFQALQ--KHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSL 684

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
             +Y +     KA   L+ ++    + + V+Y++++  +   G   E +RI  +M S+  
Sbjct: 685 MDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGV 744

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENI 336
                 Y   IS     G F +  ++
Sbjct: 745 GPCIFTYNTFISGYAAQGMFTEINDV 770


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 164/373 (43%), Gaps = 7/373 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +SK+  +  +  +F  + ++   P+  T S L+H Y++N     AE L+++M + G    
Sbjct: 407 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 466

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y  +L  Y  +  ++KV    +  L +    D   Y + +   +S  + E A +   
Sbjct: 467 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 526

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++K    PD   YS+L S   K    EKA   L EM K+    N V Y++L+      G
Sbjct: 527 EIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 586

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                  ++  +++     N   YT +I    K+G+   A  +Y+E  +   T D  V +
Sbjct: 587 DISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYS 646

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L     +   LE A      +  +G     +++  L  G+ K+G+M++ L+     +G 
Sbjct: 647 VLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMG- 704

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGKMP 472
            R  VP+   I    + L E G +     + V L+      +   ++SL       GK+P
Sbjct: 705 -RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP 763

Query: 473 LIIVERMQKDNVQ 485
           L +V+ M +D+ +
Sbjct: 764 LDVVDDMIRDHCK 776



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 42/368 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S ++H   Q+ +  +A  L+E+M+  G       Y  +++ Y   G +    ++  ++
Sbjct: 329 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 388

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K N  PD+  YN  +   +     E + K F ++++  + P+  +YS L   Y+K    
Sbjct: 389 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 448

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-------------- 306
           E A   ++ M     + N V Y  LL  Y      ++V   +K M+              
Sbjct: 449 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 508

Query: 307 -----------SLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISG 345
                      + F  +++ E          Y+ +IS L K  + EKA  I DE  S  G
Sbjct: 509 IHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKG 567

Query: 346 TGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             DP +   N L+        +  A + +N ++ KG+ P   T+  L  G  K G +   
Sbjct: 568 V-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 626

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
              + + + +     PD  + +         GD++ A  L+  +   GH S   +N+L+ 
Sbjct: 627 FYLYNEMLAT--GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD 684

Query: 464 TYAKAGKM 471
            + K GKM
Sbjct: 685 GFCKRGKM 692



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 162/368 (44%), Gaps = 10/368 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +  + +   +  A  F +++ D    PD  T  AL++   ++++S EA+AL+++MS
Sbjct: 155 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 168 ECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
            C  LK P  + Y ++++ ++  G  D+  +M++E+      P+ +TY+  +        
Sbjct: 215 -CAELK-PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + A     ++ +    PD I+Y+ +   + +    + A   L EME      N   YS 
Sbjct: 273 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++      G  ++   + ++M +   K N   Y  +IS   + G    A  I+D+   ++
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N L+       ++E +  ++ ++  +G+ P   T+  L  GYLK G +E   
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 452

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
           +  ++ + +  K  P+  +         +  DI+       ++ + G  +   IY  L+ 
Sbjct: 453 QLVQRMLDTGLK--PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIH 510

Query: 464 TYAKAGKM 471
             + +G M
Sbjct: 511 NLSSSGNM 518



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 9/265 (3%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSE----CGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           C+ALL   ++    A+A AL+ K+ E     G       Y+ ++  Y    + D   ++L
Sbjct: 85  CNALLKDLLR----ADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 140

Query: 199 QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
            E++ +    + VTYN+ +A        E A     +++   + PD  +Y  L +   K 
Sbjct: 141 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKS 200

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
               +A   L EM     + N V Y++L+  +   G  DE  ++ K+M++   + N   Y
Sbjct: 201 RRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITY 260

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             ++  L K+G+ ++A  +  +    S   D    N+++  +   +  + A    + +  
Sbjct: 261 DNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMEN 320

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEK 402
            GI P   T+ ++  G  + G+ EK
Sbjct: 321 AGISPNVYTYSIMIHGLCQSGEPEK 345


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 180/418 (43%), Gaps = 26/418 (6%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
           ++ M  + + G+     +  R+VR        KH L+          I   S  Y    D
Sbjct: 159 SVLMNAYTDSGYFSDAIQCFRLVR--------KHNLQ----------IPFHSCGYL--FD 198

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLK 173
            + K+   S A  F+E + D    PD C  + L+H   +  K  EA+ L  ++ + G   
Sbjct: 199 RLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRP 258

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
             + +N ++N Y  +G LD+  ++ + + +N   PDV TY++ +     +   + A K F
Sbjct: 259 TVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLF 318

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
           LE+    + P+ ++++TL + +      +      ++M ++  + + + Y++L++    +
Sbjct: 319 LEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKV 378

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E  ++  +M     K +   YT +I    K G+ E A  I  E        D    
Sbjct: 379 GDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAF 438

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
             L++ +    Q+  AE     ++  GIKP   T+ ++  G+ KKG ++   +  K+   
Sbjct: 439 TALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM-- 496

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
                VP         N L +QG +  A  LL  + N G V  +I YN LL  + K G
Sbjct: 497 QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHG 554



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T S L++   +  +  +A  L  +M + G +   + +  ++N +   G+ D   ++
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            Q+ L+K   PDV+TYN  +       D   A+K  +E+ +  + PD  +Y+ L     K
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E A    KEM K     + VA+++L+S +   G   E  R  ++M+    K +DA 
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESF 371
           YT VI    K G+ +    +  E +      D  VP     N+LL     + Q++ A   
Sbjct: 473 YTMVIHGFCKKGDVKTGFKLLKEMQC-----DGHVPGVVTYNVLLNGLCKQGQMKNANML 527

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
            + ++  G+ P   T+ +L  G+ K G  E
Sbjct: 528 LDAMLNLGVVPDDITYNILLEGHCKHGNRE 557



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 148/334 (44%), Gaps = 8/334 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C  L    ++   ++ A A  E++ +CG+      +N +++      ++++   +  E+
Sbjct: 192 SCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI 251

Query: 202 -KKNTSPDVVTYNLWLAA-CASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            K+   P VV++N  +   C S N D+    K F+   + ++ PD  +YS L +   K  
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFM--MENRVFPDVFTYSVLINGLCKEG 309

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A     EM  R    N V +++L++ +   G  D  + I+++M+    K +   Y 
Sbjct: 310 QLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYN 369

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I+ L K+G+  +A+ +  E        D     +L+        LE A      +V +
Sbjct: 370 TLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE 429

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GI+     +  L  G+ ++GQ+ +     ++ + +  K  PD    T   +   ++GD+ 
Sbjct: 430 GIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK--PDDATYTMVIHGFCKKGDVK 487

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
               LL  ++  GHV   + YN LL    K G+M
Sbjct: 488 TGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 105/230 (45%), Gaps = 9/230 (3%)

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK--KMMSLFAKMNDAEYTCVISSLVKL 327
           +E R   ++ + +S L++ YT+ GY  + ++ ++  +  +L    +   Y  +   L+KL
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGY--LFDRLMKL 203

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
                A   Y+E        D    N+L+      +++  A+  +  +  +G++P   ++
Sbjct: 204 NLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSF 263

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  GY K G +++     K+ +   R + PD    +   N L ++G +D A  L + +
Sbjct: 264 NTLINGYCKSGNLDQGFR-LKRFMMENRVF-PDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVL 494
            + G V  ++ + +L+  +   G+  + + I ++M +  V+ D  T   L
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371


>gi|449479164|ref|XP_004155523.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 201

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++LY  +G KDEV R+W    +L  + N   Y C+ISSL+KL + + AE I  EWES   
Sbjct: 1   MTLYAAIGNKDEVYRVWNLYTNLQKRFNSG-YLCIISSLMKLDDIDGAERILKEWESGDT 59

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + D ++PN+++ +Y  +  ++ AE++ +RL+  G +P    W+ L  GY   G   K  E
Sbjct: 60  SFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASGYHSNGLTNKAAE 119

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             KKAI  S  +W P++ ++ A    L+  G+++ AE ++  L
Sbjct: 120 TLKKAISVSPPRWKPNYDILAACLEYLKTNGNVELAEEIIGLL 162


>gi|218200516|gb|EEC82943.1| hypothetical protein OsI_27919 [Oryza sativa Indica Group]
          Length = 500

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 206/459 (44%), Gaps = 28/459 (6%)

Query: 51  AKRSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
            +RSA++   +R W  +G  VH+  +   V  LR+ + ++ AL+V EW+  +   KL   
Sbjct: 59  VERSASVCAAIRGWMGDGRAVHRGHVFHAVNRLRRRRLHRAALQVMEWIMRERPYKLSEL 118

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE 168
           DY+  L+  +K+ G+S AE+ F  +P + +     + L+ + +       A     KM E
Sbjct: 119 DYSYLLEFTAKVHGISEAESLFLRIPQEYQNELLYNNLVMACLDLGLIKLAYGYKRKMRE 178

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKET 227
                 P  YN ++ L+ S G+   + ++L ++K +  +P   TYN+ L   A++++ + 
Sbjct: 179 LSLPISPYVYNRLIILHSSPGRQKTISKILAQMKGDRVTPHTSTYNILLKIKANEHNIDG 238

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
             + F ++K+ K++P+ I+Y  L   +    L   + T ++ +E      N      LL 
Sbjct: 239 VARVFNDMKRAKVEPNEITYGILAIAHAVARLYTVSHTYVEAIENSMTGTNWSTLEILLI 298

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
           LY   G   E+   W  M  L   +    +   I +  K+G  ++AE I+ ++ES   T 
Sbjct: 299 LYGYHGKAKELKMTWDLMQGL-PHIRPKSFILAIEAFGKVGSIDQAEEIWGKFES---TR 354

Query: 348 DPRVP---NILLAAYINRNQLEMAESFYNRLVTKG--IKPCYTTWELLTWGYLKKGQMEK 402
            P++    N +L+ Y     ++ A + +  +   G  +K    T ++             
Sbjct: 355 KPKLTEQFNSILSVYCRHGLVDKASAVFKEMRANGCIVKEALKTMDI------------A 402

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSL 461
             E   K + S   W+    +I  ++    E GD+  A+ +   L  + +  ++ +YN+L
Sbjct: 403 KKEVVTKKVKSSTPWLETTHMILESF---AENGDLVNAKRVFDELNESKYCRNSFVYNTL 459

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
           L+ + KA      ++  M       DAET  +L +  + 
Sbjct: 460 LKAHVKAKVYEPDLLRAMILRGAMPDAETYSLLGLIEQF 498


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 138/267 (51%), Gaps = 3/267 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK--VPQMLQEL 201
           +A++  Y +N + ++ + L++ M E G +   + +N ++N  + +G ++     Q+L E+
Sbjct: 253 NAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEV 312

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +++   PD++TYN  ++AC+ +++ E A   F +++  +  PD  +Y+ + S+Y +    
Sbjct: 313 RRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARA 372

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA    KE+E +    + V Y+SLL  ++  G  ++V  I ++M+      ++  Y  +
Sbjct: 373 RKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTI 432

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K G  ++A  IY + +S     D     +L+ +    +++E A +  + ++  G+
Sbjct: 433 IHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGV 492

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECF 407
           KP   T+  L   Y K G+ E+  E F
Sbjct: 493 KPTLHTYSALICAYAKAGKREEAEETF 519



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 116/263 (44%), Gaps = 3/263 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+   L  A   F ++      PD  T +A++  Y +  ++ +AE L +++ 
Sbjct: 324 YNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELE 383

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             GF    + YN +L  +   G  +KV  + +E+ K+    D +TYN  +     Q   +
Sbjct: 384 SKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHD 443

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + + ++K +  +PD ++Y+ L     K    E+AA  + EM     +     YS+L+
Sbjct: 444 QAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALI 503

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G ++E    +  M     K +   Y+ ++   ++  E +KA  +Y E      T
Sbjct: 504 CAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFT 563

Query: 347 GDPRVPNILLAAYINRNQLEMAE 369
            D  +  +++ A +  N  ++ +
Sbjct: 564 PDNGLYEVMMHALVRENMWDVVD 586



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 19/374 (5%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            D+ + LL + + +++  E   +++++ + G           L  +   G L +V ++   
Sbjct: 845  DSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNG 904

Query: 201  LKK-NTSPDVVTYNLWL---AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +K     P +  Y + L     C    D ET      E+++    PD    +++  LY+ 
Sbjct: 905  MKAAGYFPTMHVYRIMLRLLCKCKRVRDVETM---LCEMEEAGFQPDLQICNSILKLYLG 961

Query: 257  MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +E  +      ++++  + + +   Y++L+ +Y      +E   +  KM SL  +     
Sbjct: 962  IEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDT 1021

Query: 317  YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
            Y  +I++  K   +E+AE +++E  S     D    ++++  Y        AE+    + 
Sbjct: 1022 YRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMK 1081

Query: 377  TKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQ 434
              GI+P  +T  LL   Y K GQ E+     K  +  G V   +P   +I A   K    
Sbjct: 1082 ESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKK---- 1137

Query: 435  GDIDGAEHLLVTLRNAG-HVSTEIYNSLLR--TYAKAGKMPLIIVERMQKDNVQMDAETQ 491
            GD       L  ++ AG      I+   +R  T ++     ++++  +Q     +     
Sbjct: 1138 GDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFDLPI--- 1194

Query: 492  KVLKITSEMPVSEV 505
            ++LK  SE  VSEV
Sbjct: 1195 RLLKEKSESLVSEV 1208



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 21/297 (7%)

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           Y   +  C      + A + F +++   ++     Y  + S+Y +M+LPE A   L   E
Sbjct: 705 YESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAE 764

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-------AKMNDAEYTCVISSL 324
                KN +   + +S+Y ++      L+IW+K  SL        +KM+   +  +I + 
Sbjct: 765 -----KNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAY 819

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G +E+A  I++       +      N LL A I   +L         L   G+K   
Sbjct: 820 AFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISK 879

Query: 385 TTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
           ++  L    + + G + +V + +   KA G    + P   +       L +   +   E 
Sbjct: 880 SSILLTLEAFAQAGNLFEVQKIYNGMKAAG----YFPTMHVYRIMLRLLCKCKRVRDVET 935

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTY--AKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
           +L  +  AG     +I NS+L+ Y   +  K   II +++Q  +++ D ET   L I
Sbjct: 936 MLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLII 992


>gi|307136024|gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]
          Length = 470

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 6/327 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG-DYAV 112
           S    + KW  EG  + + +++  +  LR+ + +  AL+  EW+E   + KLV+  DYA 
Sbjct: 144 SVPSALDKWVSEGKELSRADISLTMLYLRRRRMFGKALKFSEWLEA--NGKLVTDRDYAS 201

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
            LDLI K+RGL  AEN+   +P   +G      LL + V +    +AE +  KM +  F 
Sbjct: 202 QLDLIGKLRGLRMAENYISKIPKSFQGEVVYRTLLANCVMSTNVRKAEEVFNKMKDLEFP 261

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
                 N +L LY    +      +L   K+N  P   TY + + A    ND    E+  
Sbjct: 262 ITAFACNQLLLLYKRTDKKKIADVLLLMEKENVKPSPFTYKILIDAKGLSNDISGMEQVV 321

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +K   I     +   L   Y+   L +KA  TLKE E+   + +R     LL LY  +
Sbjct: 322 DTMKAEGIKLGVGTLLLLAKHYVSAGLKDKAKATLKETEEINSKGSRRPCRFLLPLYGEL 381

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
             +DEV R+W+   S     +  E    I +  KL   ++AE I+D           R  
Sbjct: 382 QMEDEVRRLWEICES---NPHVEECMAAIVAWGKLKNVQEAEKIFDRVVKTGKKLSTRHY 438

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKG 379
           + ++  Y +   L   +   N++   G
Sbjct: 439 STMMNVYRDSKMLTKGKELVNQMAESG 465


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 159/367 (43%), Gaps = 9/367 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS----ALLHSYVQNKKSAEAEALMEK 165
           Y   + ++ K   L+ A   FE++    + P  C+     ++  Y    K  +A +L+E+
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVP--CAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
               G +   + YN +L+     GQ+D+  +  +E+KK+  P++ TYN+ +         
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKL 425

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           ETA      +K   + P+ I+ + +     K +  + A +  + ++ +TCR + V Y SL
Sbjct: 426 ETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSL 485

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +      G  DE  +++++M+      N   YT +I +  K G  E    IY+E   +  
Sbjct: 486 IEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGC 545

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + D  + N  +       ++E   + +  +   G  P   ++ +L  G +K G   +  E
Sbjct: 546 SPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            F       +  V D R      +   + G ++ A  LL  ++  GH  T + Y S++  
Sbjct: 606 LFYTM--KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663

Query: 465 YAKAGKM 471
            AK  ++
Sbjct: 664 LAKIDRL 670



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/433 (18%), Positives = 172/433 (39%), Gaps = 42/433 (9%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  LR+LK   +A+    W E   D       Y   L ++++ R  +  E   E +   
Sbjct: 100 VIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIA 159

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEA--------------------------------- 161
             GP  +TC  ++ S+++++K  EA                                   
Sbjct: 160 GFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCM 219

Query: 162 --LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L ++M E G+      +  ++ ++   G++D    +L E+K N+  PDVV YN+ +  
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDC 279

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                  + A K F E+K   +  D ++Y+++  +  K +   +A    + M++      
Sbjct: 280 FGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPC 339

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             AY++++  Y   G  ++   + ++        +   Y C++S L + G+ ++A   ++
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           E +      +    NI++       +LE A    + +   G+ P   T  ++     K  
Sbjct: 400 EMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-I 457
           +++     F+      +   PD     +    L   G +D A  L   + +A  +    +
Sbjct: 459 RLDDACSIFEGL--DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 458 YNSLLRTYAKAGK 470
           Y SL+R + K G+
Sbjct: 517 YTSLIRNFFKCGR 529



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 133/300 (44%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A + FE L  K   PD  T  +L+    ++ +  EA  L E+M + 
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETA 228
             +   + Y  ++  +   G+ +   ++  E L+   SPD++  N ++       + E  
Sbjct: 509 NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKG 568

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K     PD  SY+ L    +K     +A      M+++ C  +  AY++++  
Sbjct: 569 RALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDG 628

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S     +
Sbjct: 629 FCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             + + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 689 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 38/305 (12%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECG 170
           ++D + K   +      F+ + +    PD  S   L+H  V+   + EA  L   M E G
Sbjct: 555 YMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQG 614

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
            +     YN +++ +  +G+++K  Q+L+E+K K   P VVTY   +   A  +  + A 
Sbjct: 615 CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY 674

Query: 230 KAFLELKKTKIDPDWISYSTLTSLY----------------------------------- 254
             F E K   I+ + + YS+L   +                                   
Sbjct: 675 MLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 734

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           +K E   +A    + M+   C  N + YS L+     +   ++    W++M     K N 
Sbjct: 735 VKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS L K G   +A+ ++++++   G  D  + N ++    N N+   A   +  
Sbjct: 795 FTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854

Query: 375 LVTKG 379
              KG
Sbjct: 855 ARLKG 859



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/369 (18%), Positives = 150/369 (40%), Gaps = 41/369 (11%)

Query: 114 LDLISKIRGLSSAENFF---ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
           + ++ +++ +++A N+F   E L D+    +  ++LL    + +K    E ++E+MS  G
Sbjct: 101 IGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAG 160

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F         ++  +I + +L +    +Q ++K    P    Y   + A ++  D +   
Sbjct: 161 FGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCML 220

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F ++++     +   ++TL  ++ +    + A + L EM+  +   + V Y+  +  +
Sbjct: 221 TLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCF 280

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  D   + + +M +    ++D  YT +I  L K     +A  +++  +        
Sbjct: 281 GKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA 340

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N ++  Y    + E A S   R   KG  P   ++  +     +KGQ+++ L+ F++
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
                +  +P+                                +ST  YN ++    KAG
Sbjct: 401 M---KKDAIPN--------------------------------LST--YNIMIDMLCKAG 423

Query: 470 KMPLIIVER 478
           K+   +V R
Sbjct: 424 KLETALVVR 432



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/253 (18%), Positives = 101/253 (39%), Gaps = 1/253 (0%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA 217
           A  + + M + G     +  N M++      +LD    + + L   T  PD VTY   + 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   + A K + ++      P+ + Y++L   + K    E       EM +  C  
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + +  ++ +      G  ++   +++++ +L    +   YT +I  LVK G   +A  ++
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
              +      D R  N ++  +    ++  A      + TKG +P   T+  +  G  K 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKI 667

Query: 398 GQMEKVLECFKKA 410
            ++++    F++A
Sbjct: 668 DRLDEAYMLFEEA 680



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 13/280 (4%)

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           YN  L   A        E+   E+      P   +   +   +IK     +A T ++ M 
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           K   R    AY++L+   +     D +L ++++M  L   +N   +T +I    + G  +
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A ++ DE +S S   D  + N+ +  +    +++MA  F++ +   G+     T+  + 
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMI 312

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTL 447
               K  ++ + +E F+       K VP       AYN +       G  + A  LL   
Sbjct: 313 GVLCKADRLNEAVELFEHM--DQNKQVP----CAYAYNTMIMGYGMAGKFEDAYSLLERQ 366

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
           R  G + + + YN +L    + G++   L   E M+KD +
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI 406


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 159/367 (43%), Gaps = 9/367 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS----ALLHSYVQNKKSAEAEALMEK 165
           Y   + ++ K   L+ A   FE++    + P  C+     ++  Y    K  +A +L+E+
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVP--CAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
               G +   + YN +L+     GQ+D+  +  +E+KK+  P++ TYN+ +         
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKL 425

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           ETA      +K   + P+ I+ + +     K +  + A +  + ++ +TCR + V Y SL
Sbjct: 426 ETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSL 485

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +      G  DE  +++++M+      N   YT +I +  K G  E    IY+E   +  
Sbjct: 486 IEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGC 545

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + D  + N  +       ++E   + +  +   G  P   ++ +L  G +K G   +  E
Sbjct: 546 SPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            F       +  V D R      +   + G ++ A  LL  ++  GH  T + Y S++  
Sbjct: 606 LFYTM--KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663

Query: 465 YAKAGKM 471
            AK  ++
Sbjct: 664 LAKIDRL 670



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/433 (18%), Positives = 172/433 (39%), Gaps = 42/433 (9%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  LR+LK   +A+    W E   D       Y   L ++++ R  +  E   E +   
Sbjct: 100 VIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIA 159

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEA--------------------------------- 161
             GP  +TC  ++ S+++++K  EA                                   
Sbjct: 160 GFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCM 219

Query: 162 --LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L ++M E G+      +  ++ ++   G++D    +L E+K N+  PDVV YN+ +  
Sbjct: 220 LTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDC 279

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                  + A K F E+K   +  D ++Y+++  +  K +   +A    + M++      
Sbjct: 280 FGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPC 339

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             AY++++  Y   G  ++   + ++        +   Y C++S L + G+ ++A   ++
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           E +      +    NI++       +LE A    + +   G+ P   T  ++     K  
Sbjct: 400 EMKK-DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-I 457
           +++     F+      +   PD     +    L   G +D A  L   + +A  +    +
Sbjct: 459 RLDDACSIFEGL--DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 458 YNSLLRTYAKAGK 470
           Y SL+R + K G+
Sbjct: 517 YTSLIRNFFKCGR 529



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 133/300 (44%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A + FE L  K   PD  T  +L+    ++ +  EA  L E+M + 
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETA 228
             +   + Y  ++  +   G+ +   ++  E L+   SPD++  N ++       + E  
Sbjct: 509 NQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKG 568

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K     PD  SY+ L    +K     +A      M+++ C  +  AY++++  
Sbjct: 569 RALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDG 628

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S     +
Sbjct: 629 FCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             + + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 689 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 38/305 (12%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECG 170
           ++D + K   +      F+ + +    PD  S   L+H  V+   + EA  L   M E G
Sbjct: 555 YMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQG 614

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
            +     YN +++ +  +G+++K  Q+L+E+K K   P VVTY   +   A  +  + A 
Sbjct: 615 CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY 674

Query: 230 KAFLELKKTKIDPDWISYSTLTSLY----------------------------------- 254
             F E K   I+ + + YS+L   +                                   
Sbjct: 675 MLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 734

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           +K E   +A    + M+   C  N + YS L+     +   ++    W++M     K N 
Sbjct: 735 VKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNV 794

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS L K G   +A+ ++++++   G  D  + N ++    N N+   A   +  
Sbjct: 795 FTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854

Query: 375 LVTKG 379
              KG
Sbjct: 855 ARLKG 859



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/369 (18%), Positives = 150/369 (40%), Gaps = 41/369 (11%)

Query: 114 LDLISKIRGLSSAENFF---ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
           + ++ +++ +++A N+F   E L D+    +  ++LL    + +K    E ++E+MS  G
Sbjct: 101 IGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAG 160

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F         ++  +I + +L +    +Q ++K    P    Y   + A ++  D +   
Sbjct: 161 FGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCML 220

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F ++++     +   ++TL  ++ +    + A + L EM+  +   + V Y+  +  +
Sbjct: 221 TLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCF 280

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  D   + + +M +    ++D  YT +I  L K     +A  +++  +        
Sbjct: 281 GKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA 340

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N ++  Y    + E A S   R   KG  P   ++  +     +KGQ+++ L+ F++
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
                +  +P+                                +ST  YN ++    KAG
Sbjct: 401 M---KKDAIPN--------------------------------LST--YNIMIDMLCKAG 423

Query: 470 KMPLIIVER 478
           K+   +V R
Sbjct: 424 KLETALVVR 432



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/253 (18%), Positives = 101/253 (39%), Gaps = 1/253 (0%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA 217
           A  + + M + G     +  N M++      +LD    + + L   T  PD VTY   + 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   + A K + ++      P+ + Y++L   + K    E       EM +  C  
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + +  ++ +      G  ++   +++++ +L    +   YT +I  LVK G   +A  ++
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
              +      D R  N ++  +    ++  A      + TKG +P   T+  +  G  K 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKI 667

Query: 398 GQMEKVLECFKKA 410
            ++++    F++A
Sbjct: 668 DRLDEAYMLFEEA 680



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 13/280 (4%)

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           YN  L   A        E+   E+      P   +   +   +IK     +A T ++ M 
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           K   R    AY++L+   +     D +L ++++M  L   +N   +T +I    + G  +
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A ++ DE +S S   D  + N+ +  +    +++MA   ++ +   G+     T+  + 
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMI 312

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTL 447
               K  ++ + +E F+       K VP       AYN +       G  + A  LL   
Sbjct: 313 GVLCKADRLNEAVELFEHM--DQNKQVP----CAYAYNTMIMGYGMAGKFEDAYSLLERQ 366

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
           R  G + + + YN +L    + G++   L   E M+KD +
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI 406


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 168/394 (42%), Gaps = 45/394 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQM 197
           T + ++HSY ++ +  +A+ ++ +M +    +C  P    +N +++     G +D    +
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEK----RCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           +  +  K   P +VT+N  L         + A++ F  + +  + PD  S++ L   + +
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   E+A    KEM++R    + V++S L+ L++  G  D      ++M  L    +   
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI 334

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT VI    + G   +A  + DE   +    D    N LL     +++L  AE   N + 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----------------GSVRK---- 416
            +G+ P   T+  L  GY + G  EK L+ F   +                G  RK    
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 417 -----W--------VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
                W         P+H   +   +   E+G ++ A   L  + + G++   + YNS++
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 463 RTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL 494
           + Y ++G  K     +++M +DN+  D  T   L
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTL 548



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 162/400 (40%), Gaps = 7/400 (1%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
            N +++ L K +R+  A EV   M+ Q  +      + + +    ++  +  A  F++ +
Sbjct: 230 FNSVLKGLCKHRRFDKAKEVFRAMD-QCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM 288

Query: 134 PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
             +   PD  S   L+  +    K   A A + +M   G +   + Y  ++  +   G +
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            +  ++  E+      PDVVTYN  L     Q+    AE+   E+K+  + PD  +++TL
Sbjct: 349 SEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTL 408

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
              Y +    EKA      +  +  R + VAY+SL+      G   +   +W  M +   
Sbjct: 409 IHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             N   Y+ +I S  + G+ E+A    DE  S     +    N ++  Y     ++  + 
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           F  +++   I P   T+  L  GY+K+  M      F   I       PD        N 
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFN--IMEKEMVQPDAVTYNMIING 586

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
             EQG+++ A  +   +  +G       Y SL+  +  AG
Sbjct: 587 FSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAG 626



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ S+ +  +  EA   +++M   G L   + YN ++  Y  +G + K  Q LQ++
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            + N  PD++T+N  +     + +   A   F  ++K  + PD ++Y+ + + + +    
Sbjct: 534 MQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNM 593

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           E+A    K+M       +R  Y SL++ +   G   E  ++  +MM
Sbjct: 594 EEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMM 639



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 126 AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F+ L  +   PD  +  +L+    +    A+A  L + M         + Y+ +++
Sbjct: 421 ALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILID 480

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKID 241
            +   GQ+++    L E+  K   P+++TYN  +   C S N K+  ++   ++ +  I 
Sbjct: 481 SHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKK-GQQFLQKMMQDNIL 539

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD I+++TL   YIK E    A      MEK   + + V Y+ +++ ++  G  +E  R+
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRV 599

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           +KKM +   + +   Y  +I+  V  G  ++A  ++DE
Sbjct: 600 FKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDE 637



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 3/245 (1%)

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE+A+  +  +  + +  + + +   Y K    +KA T + EMEKR    + V ++ L+ 
Sbjct: 141 AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLID 200

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G  D  + +   M +   K     +  V+  L K   F+KA+ ++   +  S   
Sbjct: 201 ARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAP 260

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D R  NIL+  +    ++E A  FY  +  +G+ P   ++  L   +  +G+M+      
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYL 320

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
           ++  G     VPD  + T         G +  A  +   +   G +   + YN+LL    
Sbjct: 321 REMKG--LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC 378

Query: 467 KAGKM 471
           K  ++
Sbjct: 379 KQHRL 383



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/340 (18%), Positives = 140/340 (41%), Gaps = 16/340 (4%)

Query: 140 PDTCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           P     L+ +Y Q++K  EA EA    +      + P+P +    L  +  +    P + 
Sbjct: 87  PQVFDLLIRTYTQSRKPREAFEAFRLLLDH----RVPVPASASNALLAALSRA-GWPHLA 141

Query: 199 QE-----LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           +E     L  ++  +  T N+ + +     + + A+    E++K  + PD ++++ L   
Sbjct: 142 EEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDA 201

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             +    + A   +  M  +  +   V ++S+L         D+   +++ M       +
Sbjct: 202 RFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPD 261

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              +  +I    ++GE E+A   Y E +    T D    + L+  +  R +++ A ++  
Sbjct: 262 VRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLR 321

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            +   G+ P    + ++  G+ + G M + L    + +G     +PD        N L +
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVG--LGCLPDVVTYNTLLNGLCK 379

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           Q  +  AE LL  ++  G V+ ++  + +L+  Y + G  
Sbjct: 380 QHRLLDAEELLNEMKERG-VTPDLCTFTTLIHGYCRDGNF 418



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           NLP+ M    T ++++  Y ++    + +  ++KM +   L   + +N +++ YI    +
Sbjct: 503 NLPNIM----TYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENM 558

Query: 192 DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
                +   ++K    PD VTYN+ +   + Q + E A + F ++  + I+PD  +Y +L
Sbjct: 559 HGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSL 618

Query: 251 TSLYIKMELPEKAATTLKEMEKR 273
            + ++     ++A     EM  R
Sbjct: 619 INGHVTAGNSKEAFQLHDEMMHR 641


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 159/339 (46%), Gaps = 6/339 (1%)

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +K   PD  +  AL++ + +  +  +A  ++++M    F    + YN M+    S G+LD
Sbjct: 147 EKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLD 206

Query: 193 KVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++L Q L  N  P V+TY + + A   +   + A K   E+    + PD  +Y+T+ 
Sbjct: 207 LALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTII 266

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K  + ++A   ++ +E + C  + ++Y+ LL    N G  +E  ++  KM S    
Sbjct: 267 RGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 326

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ +I++L + G+ E+A N+    +    T D    + L+AA+    +L++A  F
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
              +++ G  P    +  +     K G+ ++ LE F K +G V    P+       ++ L
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK-LGEV-GCSPNSSSYNTMFSAL 444

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
              GD   A H+++ + + G    EI YNS++    + G
Sbjct: 445 WSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREG 483



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 1/249 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EA  L+++M   G       YN ++      G +D+  +M++ L+ K   PDV++YN+ L
Sbjct: 242 EALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILL 301

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
            A  +Q   E  EK   ++   K DP+ ++YS L +   +    E+A   LK M+++   
Sbjct: 302 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 361

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +  +Y  L++ +   G  D  +   + M+S     +   Y  V+++L K G+ ++A  I
Sbjct: 362 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 421

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + +   +  + +    N + +A  +      A      +V+ GI P   T+  +     +
Sbjct: 422 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCR 481

Query: 397 KGQMEKVLE 405
           +G ++K  E
Sbjct: 482 EGMVDKAFE 490



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 140/329 (42%), Gaps = 9/329 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           + H   ++    E+  L+E M   G+    +    ++  + +   + K  ++++ L+K  
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV  YN  +      N  + A +    ++     PD ++Y+ +          + A  
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L ++    C+   + Y+ L+      G  DE L++  +M+S   K +   Y  +I  + 
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC 270

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K G  ++A  +    E      D    NILL A +N+ + E  E    ++ ++   P   
Sbjct: 271 KEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 330

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEH 442
           T+ +L     + G++E+ +   K  +   +   PD   +  + AA+ +   +G +D A  
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLK--LMKEKGLTPDAYSYDPLIAAFCR---EGRLDVAIE 385

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            L T+ + G +   + YN++L T  K GK
Sbjct: 386 FLETMISDGCLPDIVNYNTVLATLCKNGK 414



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 17/299 (5%)

Query: 120 IRGLSS------AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM-SECG 170
           IRG+        A     NL  K   PD  S   LL + +   K  E E LM KM SE  
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE-- 323

Query: 171 FLKCP---LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             KC    + Y+ ++     +G++++   +L+ +K K  +PD  +Y+  +AA   +   +
Sbjct: 324 --KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLD 381

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +    +      PD ++Y+T+ +   K    ++A     ++ +  C  N  +Y+++ 
Sbjct: 382 VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMF 441

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S   + G K   L +  +M+S     ++  Y  +IS L + G  +KA  +  +  S    
Sbjct: 442 SALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFH 501

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                 NI+L  +   +++E A    + +V  G +P  TT+ +L  G    G   + +E
Sbjct: 502 PSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 560



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + +   +  A N  + + +K   PD  S   L+ ++ +  +   A   +E M 
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L   + YN +L     NG+ D+  ++  +L +   SP+  +YN   +A  S  DK 
Sbjct: 392 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 451

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A    LE+    IDPD I+Y+++ S   +  + +KA   L +M       + V Y+ +L
Sbjct: 452 RALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +      ++ + +   M+    + N+  YT +I  +
Sbjct: 512 LGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 104/239 (43%), Gaps = 1/239 (0%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +L   ++ G+ ++  +++ ++  +   P+VVTY++ +         E A      
Sbjct: 295 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 354

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+  + PD  SY  L + + +    + A   L+ M    C  + V Y+++L+     G 
Sbjct: 355 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 414

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+ L I+ K+  +    N + Y  + S+L   G+  +A ++  E  S     D    N 
Sbjct: 415 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNS 474

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +++       ++ A      + +    P   T+ ++  G+ K  ++E  ++     +G+
Sbjct: 475 MISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGN 533



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  F E +      PD  +   +L +  +N K+ +A  +  K+ E G       YN 
Sbjct: 380 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 439

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           M +   S+G   +   M+ E+  N   PD +TYN  ++    +   + A +  ++++  +
Sbjct: 440 MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCE 499

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P  ++Y+ +   + K    E A   L  M    CR N   Y+ L+      GY+ E +
Sbjct: 500 FHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 559

Query: 300 RIWKKMMSLFA 310
            +   ++ + A
Sbjct: 560 ELANDLVRINA 570


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 165/354 (46%), Gaps = 7/354 (1%)

Query: 120 IRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           +R +  A    E L +K   PD  +  AL++ + +  +  +A  ++++M    F    + 
Sbjct: 137 LRNIPKAVRVMEIL-EKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT 195

Query: 178 YNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN M+    S G+LD   ++L Q L  N  P V+TY + + A   +   + A K   E+ 
Sbjct: 196 YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML 255

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +Y+T+     K  + ++A   ++ +E + C  + ++Y+ LL    N G  +
Sbjct: 256 SRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWE 315

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  ++  KM S     N   Y+ +I++L + G+ E+A N+    +    T D    + L+
Sbjct: 316 EGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
           AA+    +L++A  F   +++ G  P    +  +     K G+ ++ LE F K +G V  
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK-LGEV-G 433

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             P+       ++ L   GD   A H+++ + + G    EI YNS++    + G
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 140/329 (42%), Gaps = 9/329 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           + H   ++    E+  L+E M   G+    +    ++  + +   + K  ++++ L+K  
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV  YN  +      N  + A +    ++     PD ++Y+ +          + A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L ++    C+   + Y+ L+      G  DE L++  +M+S   K +   Y  +I  + 
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K G  ++A  +    E      D    NILL A +N+ + E  E    ++ ++   P   
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEH 442
           T+ +L     + G++E+ +   K  +   +   PD   +  + AA+ +   +G +D A  
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLK--LMKEKGLTPDAYSYDPLIAAFCR---EGRLDVAIE 389

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            L T+ + G +   + YN++L T  K GK
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGK 418



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 115/249 (46%), Gaps = 1/249 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EA  LM++M   G       YN ++      G +D+  +M++ L+ K   PDV++YN+ L
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
            A  +Q   E  EK   ++   K DP+ ++YS L +   +    E+A   LK M+++   
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +  +Y  L++ +   G  D  +   + M+S     +   Y  V+++L K G+ ++A  I
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + +   +  + +    N + +A  +      A      +++ GI P   T+  +     +
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query: 397 KGQMEKVLE 405
           +G +++  E
Sbjct: 486 EGMVDEAFE 494



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 11/281 (3%)

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP---LPYNHMLNLY 185
           NL  K   PD  S   LL + +   K  E E LM KM SE    KC    + Y+ ++   
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE----KCDPNVVTYSILITTL 343

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
             +G++++   +L+ +K K  +PD  +Y+  +AA   +   + A +    +      PD 
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++Y+T+ +   K    ++A     ++ +  C  N  +Y+++ S   + G K   L +  +
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           MMS     ++  Y  +IS L + G  ++A  +  +  S          NI+L  +   ++
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +E A +    +V  G +P  TT+ +L  G    G   + +E
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + +   +  A N  + + +K   PD  S   L+ ++ +  +   A   +E M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L   + YN +L     NG+ D+  ++  +L +   SP+  +YN   +A  S  DK 
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A    LE+    IDPD I+Y+++ S   +  + ++A   L +M       + V Y+ +L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +      ++ + + + M+    + N+  YT +I  +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 104/239 (43%), Gaps = 1/239 (0%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +L   ++ G+ ++  +++ ++  +   P+VVTY++ +         E A      
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+  + PD  SY  L + + +    + A   L+ M    C  + V Y+++L+     G 
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+ L I+ K+  +    N + Y  + S+L   G+  +A ++  E  S     D    N 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +++       ++ A      + +    P   T+ ++  G+ K  ++E  +   +  +G+
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 3/191 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  F E +      PD  +   +L +  +N K+ +A  +  K+ E G       YN 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           M +   S+G   +   M+ E+  N   PD +TYN  ++    +   + A +  ++++  +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P  ++Y+ +   + K    E A   L+ M    CR N   Y+ L+      GY+ E +
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 300 RIWKKMMSLFA 310
            +   ++ + A
Sbjct: 564 ELANDLVRIDA 574


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 10/387 (2%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           V L ++ + R      N F  LP K+R   +C+ LLH   ++ K   A +  + M   G 
Sbjct: 192 VDLGMLEEARQCFWKMNKFRVLP-KVR---SCNELLHRLSKSSKGGLALSFFKDMVVAGL 247

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
                 YN ++      G L+    + +E+K K   PD+VTYN  +           A  
Sbjct: 248 SPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVS 307

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F E+K    +PD I+Y++L + + K E   +A   L  M++R  + N V YS+L+  + 
Sbjct: 308 VFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFC 367

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G   E  + +  M+ +  + N+  YT +I +  K+G+  +A  +  E +      +  
Sbjct: 368 KAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIV 427

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
               LL       ++  AE  +  L+  G       +  L  GY+K   MEK ++  ++ 
Sbjct: 428 TYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM 487

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG 469
             + +   PD  L       L  Q +I+ +  ++  + + G  +   IY +L+  Y K G
Sbjct: 488 --NKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVG 545

Query: 470 KM--PLIIVERMQKDNVQMDAETQKVL 494
           K    + +++ MQ   +++   T  VL
Sbjct: 546 KTTEAVNLLQEMQDLGIKITVVTYGVL 572



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 11/321 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL    ++ +  EAE L   + + G+      Y  + + YI    ++K   +L+E+
Sbjct: 428 TYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM 487

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KKN  PD++ Y   +     QN+ E +     E+    +  +   Y+TL   Y K+   
Sbjct: 488 NKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKT 547

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L+EM+    +   V Y  L+     +G   + +R +  M     + N   YT +
Sbjct: 548 TEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTAL 607

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L K    E+A+N+++E      + D  V   L+   +       A S  NR+V  G+
Sbjct: 608 IDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGM 667

Query: 381 KPCYTTWELLTWGYLKKGQME--KVL--ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           +     +  L WG+ + GQ++  K L  E  +K I      +PD  L      K  E GD
Sbjct: 668 ELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGI------IPDQVLCICLLRKYYELGD 721

Query: 437 IDGAEHLLVTLRNAGHVSTEI 457
           I+ A  L   +   G +S  I
Sbjct: 722 INEALALHDDMARRGLISGTI 742



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 16/319 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           ++ + N+ +  G L++  Q   ++ K    P V + N  L   +  +    A   F ++ 
Sbjct: 184 FDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMV 243

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + P   +Y+ +     +    E A +  +EM+ +  R + V Y+SL+  Y  +G   
Sbjct: 244 VAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLT 303

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVP--N 353
             + ++++M     + +   Y  +I+   K   FE+    ++    +   G  P V   +
Sbjct: 304 GAVSVFEEMKDAGCEPDVITYNSLINCFCK---FERIPQAFEYLHGMKQRGLQPNVVTYS 360

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV--LECFKKAI 411
            L+ A+     L  A  F+  ++  G++P   T+  L     K G + +   LE   +  
Sbjct: 361 TLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA 420

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           G     V      TA  + L E G +  AE L   L  AG  ++ +IY SL   Y KA  
Sbjct: 421 GVNLNIVT----YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKM 476

Query: 471 M--PLIIVERMQKDNVQMD 487
           M   + I+E M K N++ D
Sbjct: 477 MEKAMDILEEMNKKNLKPD 495


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 118/237 (49%), Gaps = 1/237 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  +   G +DKV ++++E+ ++   PD+ ++N  +AA A     E   + F  +K
Sbjct: 101 YNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMK 160

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD ++Y+TL  ++ +  + ++A    +EM    C+ +   YS L+S+Y   G   
Sbjct: 161 AAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVA 220

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L I+ ++     + N   YT +IS+ +  G  E++   + + E+     D  + N ++
Sbjct: 221 DALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMI 280

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            AY     +  A +  +RL  +G+ P   ++ ++  G+L  G +E+ L  +    G+
Sbjct: 281 DAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGA 337


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 178/406 (43%), Gaps = 13/406 (3%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSEC 169
           +HL  + +   L     F E +  +   PD   C++L+  + ++ K+ +A  +ME +   
Sbjct: 111 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENS 170

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL-AACASQNDKETA 228
           G +   + YN ++  Y  +G++DK  ++L+ +  + +PDVVTYN  L + C S   KE  
Sbjct: 171 GAVPDVITYNVLIGGYCKSGEIDKALEVLERM--SVAPDVVTYNTILRSLCDSGKLKEAM 228

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
           E    +L++ +  PD I+Y+ L           +A   L EM K+ C+ + V Y+ L++ 
Sbjct: 229 EVLDRQLQR-ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 287

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
               G  DE ++    M S   K N   +  ++ S+   G +  AE +  +      +  
Sbjct: 288 ICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPS 347

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               NIL+     +  L  A     ++   G  P   ++  L  G+ ++ +M++ +E  +
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLE 407

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
             +   R   PD          L + G +D A  +L  L + G     I YN+++    K
Sbjct: 408 IMVS--RGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465

Query: 468 AGKMPLII--VERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
            GK    +  +E M++  ++ D  T   L   +  E  V E   IF
Sbjct: 466 VGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIF 511



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 3/211 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE    ++  K   P   T + L++   + +    A  ++EKM + G +   L YN +L+
Sbjct: 332 AERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLH 391

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            +    ++D+  + L+ +  +   PD+VTYN  L A       + A +   +L      P
Sbjct: 392 GFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSP 451

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I+Y+T+     K+   E A   L+EM ++  + + + YS+LL      G  DE ++I+
Sbjct: 452 VLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIF 511

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             M  L  K +   Y  ++  L K  +  +A
Sbjct: 512 HDMEGLSIKPSAVTYNAIMLGLCKAQQTSRA 542


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 158/336 (47%), Gaps = 19/336 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELK 202
           ++L+ +Y  N +  EA  + +K+ E G     + YN +LN+Y   G    K+  ++  +K
Sbjct: 224 TSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMK 283

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +  +PD+ TYN  +++C   +  E A + F E+K     PD ++Y+ L  +Y K   P 
Sbjct: 284 SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPR 343

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   LKEME      + V Y+SL+S Y   G  DE + +  +M+    K +   YT ++
Sbjct: 344 EAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLL 403

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-NQLEMAESFYNRLVTKGI 380
           S   K G+ + A  +++E        +    N L+  + NR N +EM + F      + I
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVF------EEI 457

Query: 381 KPCYTTWELLTWGYL-----KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           K C    +++TW  L     + G   +V   FK+   +   +VP+        +     G
Sbjct: 458 KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISAYSRCG 515

Query: 436 DIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
             D A  +   + +AG V+ ++  YN++L   A+ G
Sbjct: 516 FFDQAMAIYRRMLDAG-VTPDLSTYNAVLAALARGG 550



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 177/406 (43%), Gaps = 48/406 (11%)

Query: 106 VSGDYAVHLDLISKIRGLS---SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
           V+ D   +  LIS  R  S    A   FE +      PD  T +ALL  Y ++++  EA 
Sbjct: 287 VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAM 346

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWL--- 216
            ++++M   GF    + YN +++ Y  +G LD+  ++  Q +KK   PDV TY   L   
Sbjct: 347 EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF 406

Query: 217 ------------------AACASQ------------NDKETAE--KAFLELKKTKIDPDW 244
                             A C               N     E  K F E+K  +  PD 
Sbjct: 407 EKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDI 466

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++++TL +++ +  +  + +   KEM++      R  +++L+S Y+  G+ D+ + I+++
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRR 526

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      + + Y  V+++L + G +E++E +  E +      +      LL AY N  +
Sbjct: 527 MLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 586

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHR 422
           +E   +    + +  I+P     + L   Y K   + +     ++A   +R+  + PD  
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET----ERAFLELREQGFSPDIT 642

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 467
            + A  +    +  +     +L  ++++G   S   YNSL+  Y++
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 3/183 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           SK   L+  E  F  L ++   PD  T +A++  Y + +  ++   ++  + + GF    
Sbjct: 617 SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSL 676

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++ +Y      +K   +L+E+  K   PD++++N  + A       + A + F E
Sbjct: 677 TTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAE 736

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K   + PD I+Y+T  + Y    +  +A   +K M K  C+ N+  Y+SL+  +  +  
Sbjct: 737 MKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNR 796

Query: 295 KDE 297
           +DE
Sbjct: 797 RDE 799



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 139/354 (39%), Gaps = 44/354 (12%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   +E   + ++M   GF+     +N +++ Y   G  D+   +
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +  L    +PD+ TYN  LAA A     E +EK   E+K  +  P+ ++Y +L   Y  
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW-------------- 302
            +  E+ +   +E+         V   +L+ +Y+      E  R +              
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 303 -KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M+S++ +      T  I + +K   F  +   Y               N L+  Y  
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTY---------------NSLMYMYSR 688

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVP 419
               E +E     ++ KG+KP   ++  + + Y + G+M++    F   K  G      P
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFG----LAP 744

Query: 420 D---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           D   +    A+Y    +   I+  + +   ++N    +   YNSL+  + K  +
Sbjct: 745 DVITYNTFIASY--ASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNR 796



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 18/247 (7%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           +L+   +  D  +Y++L + Y       +A    K++E+  CR   + Y+ +L++Y  MG
Sbjct: 210 DLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMG 269

Query: 294 YKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                   W K+  L   M  +        Y  +ISS  +   +E+A  +++E ++   +
Sbjct: 270 MP------WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N LL  Y    +   A      +   G  P   T+  L   Y + G +++ +E 
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 407 FKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             +    V+K + PD    T   +  E+ G  D A  +   +R AG   +   +N+L++ 
Sbjct: 384 KSQM---VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKM 440

Query: 465 YAKAGKM 471
           +   G  
Sbjct: 441 HGNRGNF 447



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L+  Y ++    E E    ++ E GF       N M+++Y     + K  ++L  +K + 
Sbjct: 612 LVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSG 671

Query: 206 -SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +P + TYN  +   +     E +E    E+    + PD IS++T+   Y +    ++A+
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM+      + + Y++ ++ Y +     E + + K M+    K N   Y  +I   
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRV 351
            KL   ++A +      ++    DP V
Sbjct: 792 CKLNRRDEASSFISNLRNL----DPSV 814


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 192/430 (44%), Gaps = 27/430 (6%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S  +     S A  +FE
Sbjct: 229 NNVINACGAAGNWKKALELCKKMTRNG----VGPDLVTHNIVLSAFKNGSQYSKAIAYFE 284

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYI 186
            +      PDT +   ++H  V++ +  EA  L+  M E    +CP   + Y  +++ Y 
Sbjct: 285 MMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMRE-KRTQCPPDVVTYTSIMHSYY 343

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G+++    +   +  +   P++V+YN  L A AS+     A   F  LK+  + PD +
Sbjct: 344 VCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVV 403

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY+TL + Y +   PEKA    KEM K +CR N V+Y++L+  Y + G   E + +  +M
Sbjct: 404 SYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEM 463

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                  +    + ++++  +  +  K + I +  +S     +    N  + +Y+N    
Sbjct: 464 EKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDY 523

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             A   Y  ++   + P   T+ +L  G  K G+  + L+ F+  +  +R  +P   L  
Sbjct: 524 GKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMV-DLR--IP---LTK 577

Query: 426 AAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVER 478
             Y+ L     +QG +  AE    +++ +G +   + Y +++  Y   G  +    + + 
Sbjct: 578 EVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKE 637

Query: 479 MQKDNVQMDA 488
           M+ + VQ DA
Sbjct: 638 MEGNTVQPDA 647



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 174/431 (40%), Gaps = 20/431 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+      +HA+ V  WM+ Q +    +  Y + + L ++   +  A   F  + + 
Sbjct: 125 LIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEW 184

Query: 137 MRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD    ++L+H++ +  +   A  +M+ M           YN+++N   + G   K 
Sbjct: 185 RCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKA 244

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ +++ +N   PD+VT+N+ L+A  + +    A   F  +K   I PD  + + +   
Sbjct: 245 LELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHC 304

Query: 254 YIKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K     +A   L  M EKRT C  + V Y+S++  Y   G  ++   ++  M++   K
Sbjct: 305 LVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVK 364

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  ++ +    G    A  I+   +      D      LL AY    Q E A   
Sbjct: 365 PNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREA 424

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-----VPDHRLITA 426
           +  +     +P   ++  L   Y   G        FK+AI  + +       PD   I+ 
Sbjct: 425 FKEMRKNSCRPNIVSYNALIDAYGSAGM-------FKEAISLLHEMEKDGIPPDVVSIST 477

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 483
                     I   + +L   ++ G  ++   YNS + +Y   G     L +   M   N
Sbjct: 478 LLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASN 537

Query: 484 VQMDAETQKVL 494
           V  DA T  +L
Sbjct: 538 VNPDAVTYNIL 548



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 44/302 (14%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +ALL +Y      A+A  + + + + G     + Y  +LN Y  +GQ +K  +  +E++K
Sbjct: 371 NALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRK 430

Query: 204 NTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N+  P++V+YN  + A  S    + A     E++K  I PD +S STL +   +     K
Sbjct: 431 NSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITK 490

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--------------- 307
             T L+  + R  + N V Y+S +  Y N G   + L ++  MM+               
Sbjct: 491 IDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILIS 550

Query: 308 -------------LFAKMNDAE-------YTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                         F  M D         Y+ +I S VK G+  +AE+ +   +      
Sbjct: 551 GLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLP 610

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP----CYTTWELLTWGYLKKGQMEKV 403
           D      ++ AY +      A   +  +    ++P    C +  E L  G     Q E+V
Sbjct: 611 DVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRG----SQHERV 666

Query: 404 LE 405
           L+
Sbjct: 667 LQ 668



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 108/264 (40%), Gaps = 53/264 (20%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           GDY   L+L + +  ++S  N     PD +    T + L+    +  K AE+    E M 
Sbjct: 521 GDYGKALELYAVM--MASNVN-----PDAV----TYNILISGLCKVGKYAESLKFFEDMV 569

Query: 168 ECGFLKCPLP---YNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQN 223
           +   L+ PL    Y+ ++  Y+  G+L +       +K++   PDV+TY   + A     
Sbjct: 570 D---LRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDG 626

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY- 282
               A   F E++   + PD I  S+L     +    E+    ++ M+++    N+ AY 
Sbjct: 627 SWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYF 686

Query: 283 ----------------------------------SSLLSLYTNMGYKDEVLRIWKKMMSL 308
                                             + LL+     G  + +++++ KMMS 
Sbjct: 687 EIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSS 746

Query: 309 FAKMNDAEYTCVISSLVKLGEFEK 332
            + +  + YT ++ +L+ +G++ K
Sbjct: 747 CSTVGVSTYTVLLRNLLAVGKWRK 770



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 59/307 (19%), Positives = 116/307 (37%), Gaps = 38/307 (12%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  + S LL +  + ++  + + ++E     G     + YN  +  Y++ G   K  ++
Sbjct: 470 PDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALEL 529

Query: 198 LQ-ELKKNTSPDVVTYNLWLAA---------------------------------CA--S 221
               +  N +PD VTYN+ ++                                  C+   
Sbjct: 530 YAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVK 589

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           Q     AE  F  +K++   PD ++Y+ +   Y        A    KEME  T + + + 
Sbjct: 590 QGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAII 649

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
            SSL+         + VL++ + M      +N   Y  +I+S   L +++ A  I +  +
Sbjct: 650 CSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLD 709

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           S   +      N LL       + E     + ++++       +T+ +L    L  G+  
Sbjct: 710 SSLSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWR 769

Query: 402 KVLECFK 408
           K +E  +
Sbjct: 770 KYIEVLQ 776


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 158/336 (47%), Gaps = 19/336 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELK 202
           ++L+ +Y  N +  EA  + +K+ E G     + YN +LN+Y   G    K+  ++  +K
Sbjct: 224 TSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMK 283

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +  +PD+ TYN  +++C   +  E A + F E+K     PD ++Y+ L  +Y K   P 
Sbjct: 284 SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPR 343

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   LKEME      + V Y+SL+S Y   G  DE + +  +M+    K +   YT ++
Sbjct: 344 EAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLL 403

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-NQLEMAESFYNRLVTKGI 380
           S   K G+ + A  +++E        +    N L+  + NR N +EM + F      + I
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVF------EEI 457

Query: 381 KPCYTTWELLTWGYL-----KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           K C    +++TW  L     + G   +V   FK+   +   +VP+        +     G
Sbjct: 458 KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISAYSRCG 515

Query: 436 DIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
             D A  +   + +AG V+ ++  YN++L   A+ G
Sbjct: 516 FFDQAMAIYRRMLDAG-VTPDLSTYNAVLAALARGG 550



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 177/406 (43%), Gaps = 48/406 (11%)

Query: 106 VSGDYAVHLDLISKIRGLS---SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
           V+ D   +  LIS  R  S    A   FE +      PD  T +ALL  Y ++++  EA 
Sbjct: 287 VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAM 346

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWL--- 216
            ++++M   GF    + YN +++ Y  +G LD+  ++  Q +KK   PDV TY   L   
Sbjct: 347 EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF 406

Query: 217 ------------------AACASQ------------NDKETAE--KAFLELKKTKIDPDW 244
                             A C               N     E  K F E+K  +  PD 
Sbjct: 407 EKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDI 466

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++++TL +++ +  +  + +   KEM++      R  +++L+S Y+  G+ D+ + I+++
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRR 526

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      + + Y  V+++L + G +E++E +  E +      +      LL AY N  +
Sbjct: 527 MLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKE 586

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHR 422
           +E   +    + +  I+P     + L   Y K   + +     ++A   +R+  + PD  
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTET----ERAFLELREQGFSPDIT 642

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 467
            + A  +    +  +     +L  ++++G   S   YNSL+  Y++
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 3/183 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           SK   L+  E  F  L ++   PD  T +A++  Y + +  ++   ++  + + GF    
Sbjct: 617 SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSL 676

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++ +Y      +K   +L+E+  K   PD++++N  + A       + A + F E
Sbjct: 677 TTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAE 736

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K   + PD I+Y+T  + Y    +  +A   +K M K  C+ N+  Y+SL+  +  +  
Sbjct: 737 MKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNR 796

Query: 295 KDE 297
           +DE
Sbjct: 797 RDE 799



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 33/286 (11%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   +E   + ++M   GF+     +N +++ Y   G  D+   +
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +  L    +PD+ TYN  LAA A     E +EK   E+K  +  P+ ++Y +L   Y  
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW-------------- 302
            +  E+ +   +E+         V   +L+ +Y+      E  R +              
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 303 -KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M+S++ +      T  I + +K   F  +   Y               N L+  Y  
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTY---------------NSLMYMYSR 688

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
               E +E     ++ KG+KP   ++  + + Y + G+M++    F
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIF 734



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 18/247 (7%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           +L+   +  D  +Y++L + Y       +A    K++E+  CR   + Y+ +L++Y  MG
Sbjct: 210 DLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMG 269

Query: 294 YKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                   W K+  L   M  +        Y  +ISS  +   +E+A  +++E ++   +
Sbjct: 270 MP------WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N LL  Y    +   A      +   G  P   T+  L   Y + G +++ +E 
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 407 FKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             +    V+K + PD    T   +  E+ G  D A  +   +R AG   +   +N+L++ 
Sbjct: 384 KSQM---VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKM 440

Query: 465 YAKAGKM 471
           +   G  
Sbjct: 441 HGNRGNF 447



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 112/257 (43%), Gaps = 4/257 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +     ++E ++ +M +       L Y  +L+ Y +  +++++  +
Sbjct: 534 PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSAL 593

Query: 198 LQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E+      P  V     +   +  +     E+AFLEL++    PD  + + + S+Y +
Sbjct: 594 AEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGR 653

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             +  K    L  ++      +   Y+SL+ +Y+   + ++   I +++++   K +   
Sbjct: 654 RRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIIS 713

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  VI +  + G  ++A  I+ E +      D    N  +A+Y + +    A      ++
Sbjct: 714 FNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMI 773

Query: 377 TKGIKPCYTTWE-LLTW 392
               KP   T+  L+ W
Sbjct: 774 KNECKPNQNTYNSLIDW 790



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L+  Y ++    E E    ++ E GF       N M+++Y     + K  ++L  +K + 
Sbjct: 612 LVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSG 671

Query: 206 -SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +P + TYN  +   +     E +E    E+    + PD IS++T+   Y +    ++A+
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM+      + + Y++ ++ Y +     E + + K M+    K N   Y  +I   
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRV 351
            KL   ++A +      ++    DP V
Sbjct: 792 CKLNRRDEANSFISNLRNL----DPSV 814


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 144/329 (43%), Gaps = 4/329 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+ LLH + +  K+   +   + M   G       YN M++     G ++    + +E+
Sbjct: 100 SCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEM 159

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD VTYN  +         +     F E+K    +PD I+Y+TL + + K    
Sbjct: 160 KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKL 219

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            K     +EM++   + N V+YS+L+  +       + L+ +  M  L    N+  YT +
Sbjct: 220 PKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSL 279

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           + +  K+G    A  + DE   +    +      L+    +  +++ AE  + ++VT G+
Sbjct: 280 VDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGV 339

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   ++  L  G++K   M++ LE   +  G  R   PD  L       L     I+ A
Sbjct: 340 IPNLASYTALIHGFVKAKNMDRALELLDEMKG--RGIKPDLLLYGTFIWSLCGLEKIEAA 397

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
           + ++  ++  G   +T IY +L+  Y K+
Sbjct: 398 KVVMNEMQEKGIKANTFIYTTLMDAYFKS 426



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/334 (19%), Positives = 141/334 (42%), Gaps = 5/334 (1%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++    K  +    LE    M+ Q  +K     Y+  +D   K   +  A  F+ ++ 
Sbjct: 207 NTLINCFCKFGKLPKGLEFFREMK-QSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMR 265

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P+  T ++L+ +Y +    ++A  L ++MS+ G     + Y  +++      ++ 
Sbjct: 266 RLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIK 325

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++  ++      P++ +Y   +       + + A +   E+K   I PD + Y T  
Sbjct: 326 EAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI 385

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
                +E  E A   + EM+++  + N   Y++L+  Y       E L + ++M+ L  +
Sbjct: 386 WSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIE 445

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRNQLEMAES 370
           +    +  +I  L K     KA + +    +  G   +  +   ++      +Q+E A +
Sbjct: 446 VTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATT 505

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            + ++  KG+ P  T +  L  G LK+G + + L
Sbjct: 506 LFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQAL 539



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/438 (19%), Positives = 173/438 (39%), Gaps = 50/438 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCS--ALLHSYVQNKKSAEAEALMEK 165
           Y + +D + K   + +A   FE +  K RG  PDT +  +++  Y +  +  +     E+
Sbjct: 136 YNIMIDCMCKEGDIEAASGLFEEM--KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEE 193

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQND 224
           M         + YN ++N +   G+L K  +  +E+K++   P+VV+Y+  + A   ++ 
Sbjct: 194 MKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDM 253

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK------------ 272
            + A K ++++++  + P+  +Y++L   Y K+     A     EM +            
Sbjct: 254 MQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTA 313

Query: 273 ---RTCRKNRV--------------------AYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
                C   R+                    +Y++L+  +      D  L +  +M    
Sbjct: 314 LIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRG 373

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            K +   Y   I SL  L + E A+ + +E +      +  +   L+ AY          
Sbjct: 374 IKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGL 433

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
                ++   I+    T+ +L  G  K   + K ++ F + I +      +  + TA  +
Sbjct: 434 HLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGR-ISNDFGLQANAAIYTAMID 492

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQM 486
            L ++  ++ A  L   +   G V     Y SL+    K G +   L + ++M +  V+ 
Sbjct: 493 GLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVES 552

Query: 487 DAE----TQKVLKITSEM 500
            A      Q  +K++  M
Sbjct: 553 GARFGDLCQNTIKLSLRM 570


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 193/441 (43%), Gaps = 53/441 (12%)

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS----AENFFENLP--DKMRGPD 141
           + A+ + EW+ L      V+ D    ++L+++I G  S    A   F+ +P  D      
Sbjct: 152 ERAILLFEWLVLNLGTGNVNLDNQA-VELMARILGRESQHSIASKLFDVIPLDDYSLDVR 210

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQE 200
             + +LHSY +  K   A A+ EKM+E G     + YN ML++Y   G+  +K+  +L E
Sbjct: 211 AYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++ K    D  T +  ++AC  +   + A++ F+ LK     P  ++Y+ L  ++ K  +
Sbjct: 271 MRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGI 330

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A + +KEME   C  + V Y+ L++ Y   G+ +E   +   M     K N   YT 
Sbjct: 331 YSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTT 390

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I++  +  + +KA ++YD+ +      +    N +L     ++Q E        +   G
Sbjct: 391 MINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDG 450

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPD----HRLITAA------ 427
             P   TW  +      KG  + V   F+  K+ G    + PD    + LITA+      
Sbjct: 451 CAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCG----FEPDRDTFNTLITASGRCGSD 506

Query: 428 -------------------------YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSL 461
                                     N L  +GD   AE ++  ++N G   +E  Y+ +
Sbjct: 507 IDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLI 566

Query: 462 LRTYAKAGKMPLIIVERMQKD 482
           L +YAK G +  I   R++KD
Sbjct: 567 LNSYAKGGYVKGI--NRIEKD 585



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 113/273 (41%), Gaps = 5/273 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD+    DT + L+ +  +     +AE + ++M E GF      YN +LN     G    
Sbjct: 488 PDR----DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRT 543

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +++++K K   P   +Y+L L + A     +   +   ++    I P W+   TL  
Sbjct: 544 AESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLIL 603

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K           + ++K   + + V ++S+LS+++     D    I   +     + 
Sbjct: 604 ANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQP 663

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  ++    + GE  KAE I  E ++     D    N ++  +  +  +  A    
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTL 723

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + ++++GI+PC  T+     GY  KG   ++ E
Sbjct: 724 SEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDE 756



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML+++      D+  +++  +++    PD+VTYN  +   A   +   AE+   EL+
Sbjct: 633 FNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQ 692

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
            +    D ISY+T+   + +  L  +A  TL EM  R  R   V Y++ +  Y   G   
Sbjct: 693 NSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFA 752

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           E+  +   M     + N+  Y  V+    K  +F++A +       I  + D
Sbjct: 753 EIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTITDIDDSFD 804



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 143/366 (39%), Gaps = 41/366 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++   +   +  A + ++ + +    P+ C+  A+L    +  +S E   ++  M 
Sbjct: 388 YTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMK 447

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + +N ML++  + G    V ++ QE+K     PD  T+N  + A        
Sbjct: 448 VDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDI 507

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AEK + E+ +    P   +Y+ L +   +      A + +K+M+ +  + +  +YS +L
Sbjct: 508 DAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLIL 567

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y   GY   + RI K +       +      +I +  K       E  +   +     
Sbjct: 568 NSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYK 627

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  V N +L+ +  +N  + A    + +   G++P   T+  L   Y + G      EC
Sbjct: 628 PDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGG------EC 681

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           +K                               AE +L  L+N+G  S  I YN++++ +
Sbjct: 682 WK-------------------------------AEEILRELQNSGDKSDLISYNTVIKGF 710

Query: 466 AKAGKM 471
            + G M
Sbjct: 711 CRQGLM 716



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           +++  Q LQ  K    PD+V +N  L+  + +N  + A +    +++  + PD ++Y++L
Sbjct: 614 MERAFQALQ--KHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSL 671

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
             LY +     KA   L+E++    + + ++Y++++  +   G   E LR   +M+S   
Sbjct: 672 MDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGI 731

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENI 336
           +     Y   +      G F + + +
Sbjct: 732 RPCIVTYNTFVGGYAAKGMFAEIDEV 757


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 186/424 (43%), Gaps = 16/424 (3%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  +VR  ++LK++    E+ EW++ Q        D+ + +    K    + AE  F ++
Sbjct: 108 LGTLVR-FKQLKKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFGDM 166

Query: 134 PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
             K   P   S  AL+ +Y + K+  +AE++  +M   G     L Y  +L +++   + 
Sbjct: 167 HKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKF 226

Query: 192 DKVPQMLQEL----KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            +  +  + L    K    PD   +++ +       + E A K F  +++  +    ++Y
Sbjct: 227 KEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTY 286

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           ++L S     +   + + T  +M++   R + V+Y+ L++ Y     ++E L ++++M+ 
Sbjct: 287 NSLMSFETNYK---EVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLD 343

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     Y  ++ +    G  ++A  ++        T D      +L+AY+N + +E 
Sbjct: 344 AGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEG 403

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           AE F+ RL   G +P   T+  L  GY K   +EK++E +++    V     +  + TA 
Sbjct: 404 AEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEM--QVHGIKANQAIYTAM 461

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAG----HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDN 483
            +   +  D   A      +   G      +T I  SL +T A+  +  L++    +  N
Sbjct: 462 MDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLLVGYSSKYSN 521

Query: 484 VQMD 487
            QMD
Sbjct: 522 GQMD 525


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 192/429 (44%), Gaps = 25/429 (5%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E  +   ++ +L + ++M+ Q   K     Y + + ++ +   L   +  F+ +P  
Sbjct: 116 VFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSH 175

Query: 137 MRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
              P   S  AL+++Y +N +   +  L+++M +       L YN ++N   + G LD  
Sbjct: 176 GVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVIN-SCARGGLDWE 234

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           ++  +  +++ +    D+VTYN  L+ACA +   + AE  F  + +  I PD  +YS L 
Sbjct: 235 ELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLV 294

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   EK +  LKEME      +  +Y+ LL  +   G   E + ++++M      
Sbjct: 295 ETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCV 354

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N A Y+ +++   + G ++   +++ E +  +   +    NIL+  +      +   + 
Sbjct: 355 PNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTL 414

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAA 427
           ++ +V + ++P   T+E L +   K G  E     +L   +K +      VP  +  T  
Sbjct: 415 FHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGV------VPSSKAYTGV 468

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVST----EIYNSLLRTYAKAG--KMPLIIVERMQK 481
              +E  G     E  LV       V +    E YNSL++ +AK G  K    I+ +M +
Sbjct: 469 ---IEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQ 525

Query: 482 DNVQMDAET 490
             V  + +T
Sbjct: 526 SGVARNRDT 534



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 167/416 (40%), Gaps = 14/416 (3%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A +  R   E G        + +V    KL R +   E+ + ME       ++  Y V L
Sbjct: 271 AEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDIT-SYNVLL 329

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           +  ++   +  A   F  +      P+  T S LL+ Y ++ +  +   L  +M      
Sbjct: 330 EAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTE 389

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                YN ++N++   G   +V  +  ++ ++N  P++ TY   + AC      E A+K 
Sbjct: 390 PNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI 449

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            L + +  + P   +Y+ +   Y +  L E+A      M +   +     Y+SL+ ++  
Sbjct: 450 LLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAK 509

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   E   I  KM       N   +  VI +  + G+FE+A   Y E E      D + 
Sbjct: 510 GGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQT 569

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECF 407
              +L+ Y     +E +E  +  +   GI P    + ++   Y K  + +     + E F
Sbjct: 570 LEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMF 629

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
              + ++ + +   ++I   Y   ++  +    E++   L++ G  +    YN+LL
Sbjct: 630 TNRVSNIHQVI--GQMIRGDY---DDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLL 680


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 163/342 (47%), Gaps = 11/342 (3%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSA-ENFFENLPDKMRGPDTCSA 145
           ++ ALEV EW+ L++     +   A  L ++ +    S A E F    P         +A
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNA 230

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL---- 201
           ++  Y ++ K ++A+ L++ M + G +   + +N ++N  + +G L   P ++ EL    
Sbjct: 231 MMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGL--TPNLVVELLDMV 288

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 PD +TYN  L+AC+  ++ E A K F +++  +  PD  +Y+ + S+Y +  L 
Sbjct: 289 RNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLA 348

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     E+E +    + V Y+SLL  +      ++V  ++++M  +    ++  Y  +
Sbjct: 349 AEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           I    K G+ + A  +Y + + +SG   D     +L+ +    N+   A +  + ++  G
Sbjct: 409 IHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVG 468

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           IKP   T+  L  GY K G+ E+  + F   + S  K  PD+
Sbjct: 469 IKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTK--PDN 508



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 5/240 (2%)

Query: 122 GLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           GL++ AE  F  L  K   PD  T ++LL+++ + + + + + + ++M + GF K  + Y
Sbjct: 346 GLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTY 405

Query: 179 NHMLNLYISNGQLDKVPQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           N ++++Y   GQLD   Q+ +++K     +PD +TY + + +    N    A     E+ 
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEML 465

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              I P   +YS L   Y K    E+A  T   M +   + + +AYS +L +        
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +   +++ M+S     + + Y  +I  L+K    +  +    + E + G     + ++L+
Sbjct: 526 KAWVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNPLEISSVLV 585



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 161/372 (43%), Gaps = 24/372 (6%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            Y   ++   K++    AE+   NL    R PD  T ++L+ +Y +      A A+   M 
Sbjct: 755  YTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM 814

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQN 223
              G        N +L+    +G+L+++  +++EL+    K +   ++   L L A A   
Sbjct: 815  RDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSIL---LMLDAFARAG 871

Query: 224  DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
            +     K +  +K     P    Y  +  L  K +    A   + EME+   +     ++
Sbjct: 872  NIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWN 931

Query: 284  SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
            S+L +YT +    + +++++++     + ++  Y  +I   +      + E  Y   + +
Sbjct: 932  SMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLI---IMYCRDRRPEEGYSLMQQM 988

Query: 344  SGTG-DPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIK---PCYTTWELLTWGYLKK 397
               G DP++     L++A+  +  LE AE  +  L++KG+K     Y T   ++      
Sbjct: 989  RNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSD 1048

Query: 398  GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTE 456
             + EK+L+  K A   +   +    L+  +Y+     G+   AE +L  L+N    ++T 
Sbjct: 1049 SKAEKLLQMMKNA--GIEPTLATMHLLMVSYSS---SGNPQEAEKVLSNLKNTEVELTTL 1103

Query: 457  IYNSLLRTYAKA 468
             Y+S++  Y ++
Sbjct: 1104 PYSSVIDAYLRS 1115



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/285 (18%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
            +L ++ +     E   +   M   G+L     Y  M+ L     ++     M+ E+++ N
Sbjct: 863  MLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
               ++  +N  L       D +   + +  +K++ ++PD  +Y+TL  +Y +   PE+  
Sbjct: 923  FKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            + +++M           Y SL+S +      ++  +++++++S   K++ + Y  ++   
Sbjct: 983  SLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAE +    ++          ++L+ +Y +    + AE   + L    ++   
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTT 1102

Query: 385  TTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
              +  +   YL+    K  +E++LE  K+ +       PDHR+ T
Sbjct: 1103 LPYSSVIDAYLRSKDYKSGIERLLEMKKEGLE------PDHRIWT 1141



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            DT  +L+ ++ + K   +AE L E++   G       Y+ M+ +   +G   K  ++LQ 
Sbjct: 998  DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057

Query: 201  LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            +K     P + T +L + + +S  + + AEK    LK T+++   + YS++   Y++ + 
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKD 1117

Query: 260  PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
             +     L EM+K     +   ++  +   +    K EV+ + K +  +
Sbjct: 1118 YKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLLLKALQDI 1166



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 121/297 (40%), Gaps = 22/297 (7%)

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           Y   L  C +      A + F EL+ +  +P      ++  +Y K+  PE A   + + E
Sbjct: 684 YETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAE 743

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT-------CVISSL 324
            +        + +   +YT++      L++W+K  S+   +  +  T        ++S+ 
Sbjct: 744 TKG------FHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAY 797

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G +E+A  I++       +      N LL A     +LE        L   G K   
Sbjct: 798 AECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISK 857

Query: 385 TTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
           ++  L+   + + G + +V + +   KA G    ++P  RL       L +   +  AE 
Sbjct: 858 SSILLMLDAFARAGNIFEVNKIYSSMKAAG----YLPTIRLYRMMIELLCKGKRVRDAEI 913

Query: 443 LLVTLRNAGH-VSTEIYNSLLRTYA--KAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
           ++  +  A   V   I+NS+L+ Y   +  K  + + +R+++  ++ D  T   L I
Sbjct: 914 MVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLII 970


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 7/373 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +SK+  +  +  +F  + ++   P+  T S L+H Y++N     AE L+++M + G    
Sbjct: 512 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 571

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y  +L  Y  +  ++KV    +  L +    D   Y + +   +S  + E A +   
Sbjct: 572 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 631

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            ++K    PD   YS+L S   K    EKA   L EM K+    N V Y++L+      G
Sbjct: 632 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 691

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                  ++  +++     N   YT +I    K+G+   A  +Y+E  +   T D  V +
Sbjct: 692 DISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYS 751

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L     +   LE A      +  +G     +++  L  G+ K+G+M++ L+     +G 
Sbjct: 752 VLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMG- 809

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGKMP 472
            R  VP+   I    + L E G +     + V L+      +   ++SL       GK+P
Sbjct: 810 -RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP 868

Query: 473 LIIVERMQKDNVQ 485
           L +V+ M +D+ +
Sbjct: 869 LDVVDDMIRDHCK 881



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 42/368 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S ++H   Q+ +  +A  L+E+M+  G       Y  +++ Y   G +    ++  ++
Sbjct: 434 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 493

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K N  PD+  YN  +   +     E + K F ++++  + P+  +YS L   Y+K    
Sbjct: 494 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 553

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-------------- 306
           E A   ++ M     + N V Y  LL  Y      ++V   +K M+              
Sbjct: 554 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 613

Query: 307 -----------SLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISG 345
                      + F  ++  E          Y+ +IS L K  + EKA  I DE  S  G
Sbjct: 614 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKG 672

Query: 346 TGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             DP +   N L+        +  A + +N ++ KG+ P   T+  L  G  K G +   
Sbjct: 673 V-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 731

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
              + + + +     PD  + +         GD++ A  L+  +   GH S   +N+L+ 
Sbjct: 732 FYLYNEMLAT--GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD 789

Query: 464 TYAKAGKM 471
            + K GKM
Sbjct: 790 GFCKRGKM 797



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 180/427 (42%), Gaps = 22/427 (5%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEV-CEWMELQYDIKLV-----------SGDY 110
           +  GH      L R V       R+  ALE  C+  E     K++           +  Y
Sbjct: 201 ERSGHGSQHSVLQRAVEGSAARGRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTY 260

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSE 168
            V +  + +   +  A  F +++ D    PD  T  AL++   ++++S EA+AL+++MS 
Sbjct: 261 NVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS- 319

Query: 169 CGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDK 225
           C  LK P  + Y ++++ ++  G  D+  +M++E+      P+ +TY+  +         
Sbjct: 320 CAELK-PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 378

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A     ++ +    PD I+Y+ +   + +    + A   L EME      N   YS +
Sbjct: 379 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIM 438

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +      G  ++   + ++M +   K N   Y  +IS   + G    A  I+D+   ++ 
Sbjct: 439 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 498

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L+       ++E +  ++ ++  +G+ P   T+  L  GYLK G +E   +
Sbjct: 499 LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQ 558

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             ++ + +  K  P+  +         +  DI+       ++ + G  +   IY  L+  
Sbjct: 559 LVQRMLDTGLK--PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 616

Query: 465 YAKAGKM 471
            + +G M
Sbjct: 617 LSSSGNM 623


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 198/470 (42%), Gaps = 63/470 (13%)

Query: 94  CEWMELQYDIKLVSGDYAVH-------LDLISKIRGLSSAENFFENLPDKMRGPDTCS-- 144
           C  + L++   LVS  Y  H       +  + K+  +  AE+   ++P     PD  S  
Sbjct: 36  CGILSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYN 95

Query: 145 ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL 201
           +L+  + +N     A  ++E + +  GF+  P  + +N + N +     LD+V   +  +
Sbjct: 96  SLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVM 155

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            K  SP+VVTY+ W+       + + A K+F  +K+  + P+ ++++ L   Y K    E
Sbjct: 156 LKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLE 215

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLS-------------LYTNM---------------- 292
            A +  KEM +     N V Y++L+              +Y+ M                
Sbjct: 216 VAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTII 275

Query: 293 ------GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D  ++   KM++   +++   Y  +IS L   G+ ++A  I ++ E     
Sbjct: 276 DGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLV 335

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK--VL 404
            D  +   ++ AY    +++ A + Y++L+ +G +P       +  G  K GQ+ +  V 
Sbjct: 336 PDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVY 395

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLR 463
            C +KA         +  + T   + L ++GD    E L   +  AG V  + +Y S + 
Sbjct: 396 FCIEKA---------NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIA 446

Query: 464 TYAKAGKM--PLIIVERMQKDNVQMD--AETQKVLKITSEMPVSEVSSIF 509
              K G +     +  RM ++ + +D  A T  +  + S+  + E   +F
Sbjct: 447 GLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVF 496



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 8/314 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T +AL+  + +  +   AE +  +M E       L Y  +++ +   G  D   + L + 
Sbjct: 235 TYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L +    D+  Y + ++        + A +   +++K+ + PD + ++T+ + Y K    
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRM 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     ++ +R    + VA S+++      G   E +  +        K ND  YT +
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF-----CIEKANDVMYTVL 409

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +L K G+F + E ++ +        D  +    +A    +  L  A     R+V +G+
Sbjct: 410 IDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGL 469

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
                 +  L +G   KG M +  + F + + S     PD  +        E++G++  A
Sbjct: 470 LLDLLAYTTLIYGLASKGLMVEARQVFDEMLNS--GISPDSAVFDLLIRAYEKEGNMAAA 527

Query: 441 EHLLVTLRNAGHVS 454
             LL+ ++  G V+
Sbjct: 528 SDLLLDMQRRGLVT 541


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 178/403 (44%), Gaps = 15/403 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLV--SGDYAVHLDLISKIRGLSSAENFFENLP 134
           I++ L   K+   A+ V  W+  + D + V      AV + ++ K   +S+A +   NL 
Sbjct: 150 IIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNL- 208

Query: 135 DKMRGPD----TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
            +  G D      ++L+ +Y  N +  +A  + +KM E G     + YN +LN+Y   G 
Sbjct: 209 -RKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGM 267

Query: 191 L-DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
              K+  ++  +K +  +PD  TYN  ++ C   +  E A + F E+K +   PD ++++
Sbjct: 268 PWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFN 327

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL  +Y K   P++A   LKEME      + V Y+SL+S Y   G   E + +  +M+  
Sbjct: 328 TLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEK 387

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             K +   YT ++S   K G  E A  I+ E  +     +    N L+  + NR +    
Sbjct: 388 GIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEM 447

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
              +  +      P   TW  L   + + G   +V   FK+   +   +VP+        
Sbjct: 448 MKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLI 505

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
           +     G    A  +   +  AG V+ ++  YN++L   A+ G
Sbjct: 506 SAYSRCGSFQQAMAVYKRMLEAG-VTPDLSSYNAVLAALARGG 547



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 145/321 (45%), Gaps = 10/321 (3%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISKIR 121
           K  G     Y  N ++   R+   Y+ A +V E M+L  +    V+  +   LD+  K R
Sbjct: 280 KSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVT--FNTLLDVYGKSR 337

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
               A    + +      P   T ++L+ +Y ++    EA  L ++M E G       Y 
Sbjct: 338 RPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYT 397

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +L+ +   G  +   ++  E++     P++ T+N  +    ++       K F E++  
Sbjct: 398 TLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEIC 457

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD ++++TL +++ +  +  + +   KEM++      R  +++L+S Y+  G   + 
Sbjct: 458 NCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQA 517

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           + ++K+M+      + + Y  V+++L + G +E++E ++ E +      +      LL A
Sbjct: 518 MAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHA 577

Query: 359 YINRNQLE----MAESFYNRL 375
           Y N  ++E    +AE  Y+ L
Sbjct: 578 YANSKEIERMHTLAEEIYSGL 598



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 138/343 (40%), Gaps = 21/343 (6%)

Query: 139 GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
            PD  T + LL  + QN   +E   + ++M   GF+     +N +++ Y   G   +   
Sbjct: 460 APDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMA 519

Query: 197 MLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           + +  L+   +PD+ +YN  LAA A     E +EK F E+K  +  P+ ++Y +L   Y 
Sbjct: 520 VYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYA 579

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
             +  E+  T  +E+         V   +L+ + +    K ++L   +       K    
Sbjct: 580 NSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNS----KCDLLMETEHAFEELKKKGSP 635

Query: 316 EYTCVISSLVKLGEFE---KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           + + + + +   G  +   KA  I +       +      N L+  +      E +E   
Sbjct: 636 DLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVL 695

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPD---HRLITAA 427
             ++ KG+KP   ++  + + Y + G+M+     F   K  G     VPD   +    A+
Sbjct: 696 KEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYG----LVPDVITYNTFVAS 751

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           Y       D  G    ++  ++    +   YNS++  Y K  +
Sbjct: 752 YAADSLFEDAIGVVRYMI--KHGCKRNQNTYNSIVDGYCKHSR 792


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 169/374 (45%), Gaps = 11/374 (2%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHK-YELNRIVRELRKLKRYKHALEVCEWMELQY 101
           RRL++ +    SA   +R  + +   + K   L  +VR  ++LK++    E+ EW+  Q 
Sbjct: 74  RRLMNEIEETGSAVSVLRSERIKNEAIPKDLVLGTLVR-FKQLKKWNLVSEILEWLRTQS 132

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEA 159
                  D+ + +    K+   + AE     +  K   P+  S  AL+ +Y + ++   A
Sbjct: 133 WWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNA 192

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLW 215
           EA+  +M   G     L Y  ML  ++   +  +  ++   L    K    PD   +++ 
Sbjct: 193 EAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMI 252

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +       + E A K F E+    +    ++Y++L S     +   + +    +M++   
Sbjct: 253 IYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYK---EVSKIYDQMQRAGL 309

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           + + V+Y+ L+S Y     ++E L ++++M+    +     Y  ++ +    G  E+A+ 
Sbjct: 310 QPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKI 369

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++   +    + D      +L+AY+N + +E AE+F+ RL   G +P   T+  L  GY 
Sbjct: 370 VFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYA 429

Query: 396 KKGQMEKVLECFKK 409
           K   +EK+++ +++
Sbjct: 430 KINNLEKMIKRYEE 443



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 118/280 (42%), Gaps = 11/280 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSALLHSYVQNKKSA----EAEAL 162
           Y + L    +      AE  F++L +K +    PD    + H  +   K A    +A  +
Sbjct: 211 YQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPD--QKMFHMIIYMFKKAGNYEKARKV 268

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222
             +M+  G  +  + YN +++   +  ++ K+   +Q  +    PDVV+Y L ++A    
Sbjct: 269 FAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQ--RAGLQPDVVSYALLISAYGKA 326

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
             +E A   F E+    I P   +Y+ L   +    + E+A    K M++  C  +  +Y
Sbjct: 327 RREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSY 386

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +++LS Y N    +     ++++     + N   Y  +I    K+   EK    Y+E + 
Sbjct: 387 TTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKV 446

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
                +  +   ++ AY        A  ++N + + G++P
Sbjct: 447 NGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRP 486



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 3/212 (1%)

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNT 205
           L S+  N K  E   + ++M   G     + Y  +++ Y    + ++   + +E L    
Sbjct: 287 LMSFETNYK--EVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGI 344

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            P    YN+ L A A     E A+  F  +K+ +  PD  SY+T+ S Y+     E A  
Sbjct: 345 RPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAEN 404

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             + +++   R N V Y +L+  Y  +   +++++ +++M     ++N    T ++ +  
Sbjct: 405 FFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYG 464

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           K  +F  A   ++E ES     D +  NILL+
Sbjct: 465 KNKDFGSAVIWFNEIESCGLRPDQKAKNILLS 496


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 7/373 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +SK+  +  +  +F  + ++   P+  T S L+H Y++N     AE L+++M + G    
Sbjct: 534 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 593

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y  +L  Y  +  ++KV    +  L +    D   Y + +   +S  + E A +   
Sbjct: 594 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 653

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            ++K    PD   YS+L S   K    EKA   L EM K+    N V Y++L+      G
Sbjct: 654 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 713

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                  ++  +++     N   YT +I    K+G+   A  +Y+E  +   T D  V +
Sbjct: 714 DISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYS 773

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L     +   LE A      +  +G     +++  L  G+ K+G+M++ L+     +G 
Sbjct: 774 VLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMG- 831

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGKMP 472
            R  VP+   I    + L E G +     + V L+      +   ++SL       GK+P
Sbjct: 832 -RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP 890

Query: 473 LIIVERMQKDNVQ 485
           L +V+ M +D+ +
Sbjct: 891 LDVVDDMIRDHCK 903



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 42/368 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S ++H   Q+ +  +A  L+E+M+  G       Y  +++ Y   G +    ++  ++
Sbjct: 456 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 515

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K N  PD+  YN  +   +     E + K F ++++  + P+  +YS L   Y+K    
Sbjct: 516 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 575

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-------------- 306
           E A   ++ M     + N V Y  LL  Y      ++V   +K M+              
Sbjct: 576 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 635

Query: 307 -----------SLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISG 345
                      + F  ++  E          Y+ +IS L K  + EKA  I DE  S  G
Sbjct: 636 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKG 694

Query: 346 TGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             DP +   N L+        +  A + +N ++ KG+ P   T+  L  G  K G +   
Sbjct: 695 V-DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 753

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
              + + + +     PD  + +         GD++ A  L+  +   GH S   +N+L+ 
Sbjct: 754 FYLYNEMLAT--GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVD 811

Query: 464 TYAKAGKM 471
            + K GKM
Sbjct: 812 GFCKRGKM 819



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 162/368 (44%), Gaps = 10/368 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +  + +   +  A  F +++ D    PD  T  AL++   ++++S EA+AL+++MS
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 168 ECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
            C  LK P  + Y ++++ ++  G  D+  +M++E+      P+ +TY+  +        
Sbjct: 342 -CAELK-PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + A     ++ +    PD I+Y+ +   + +    + A   L EME      N   YS 
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++      G  ++   + ++M +   K N   Y  +IS   + G    A  I+D+   ++
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N L+       ++E +  ++ ++  +G+ P   T+  L  GYLK G +E   
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 579

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
           +  ++ + +  K  P+  +         +  DI+       ++ + G  +   IY  L+ 
Sbjct: 580 QLVQRMLDTGLK--PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIH 637

Query: 464 TYAKAGKM 471
             + +G M
Sbjct: 638 NLSSSGNM 645



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 115/265 (43%), Gaps = 9/265 (3%)

Query: 143 CSALLHSYVQNKKSAEAEALM----EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           C+ALL   ++    A+A AL+    E M   G       Y+ ++  Y    + D   ++L
Sbjct: 212 CNALLKDLLR----ADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 267

Query: 199 QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
            E++ +    + VTYN+ +A        E A     +++   + PD  +Y  L +   K 
Sbjct: 268 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKS 327

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
               +A   L EM     + N V Y++L+  +   G  DE  ++ K+M++   + N   Y
Sbjct: 328 RRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITY 387

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             ++  L K+G+ ++A  +  +    S   D    N+++  +   +  + A    + +  
Sbjct: 388 DNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMEN 447

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEK 402
            GI P   T+ ++  G  + G+ EK
Sbjct: 448 AGISPNVYTYSIMIHGLCQSGEPEK 472


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 166/371 (44%), Gaps = 12/371 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPD-KMRGPD--TCSALLHSYV-QNKKSAEAEALMEK 165
           Y V ++ + K R  S A    + + D K   PD  T S +++ +  Q +     E L E 
Sbjct: 44  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 103

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQND 224
           ++  G     + Y  +++    +G++D+  +M++E+K K   PD  T++  +    +   
Sbjct: 104 VTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 163

Query: 225 KETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
            + A K + E L  +   PD ++Y+ L   + K    EKA   L  ME R C  N V YS
Sbjct: 164 VDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 223

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           SLL      G  D+ L ++++M S     N   YT +I  L    + + A  + DE  + 
Sbjct: 224 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 283

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK- 402
               D    N LL  Y    ++E A+  +  + TK   P   T+  L  G+    ++E+ 
Sbjct: 284 CCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEA 343

Query: 403 --VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 460
             +LE  K A G +   V  + ++ A Y++ +    ++ AE +   +      +   Y+S
Sbjct: 344 RFLLENMKTAAG-IDPDVVTYSIVVAGYSRAKRF--VEAAEFIQEMIARNVAPNAVTYSS 400

Query: 461 LLRTYAKAGKM 471
           L+    KAG++
Sbjct: 401 LIDGLCKAGRV 411



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 135/307 (43%), Gaps = 47/307 (15%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  L  + K   L  A + F  +  K   P+  T + L+H      K   A  LM++M+
Sbjct: 222 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 281

Query: 168 ECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQN 223
                 CP   + YN +L+ Y   G++++  Q+ +E+  K+  PD +TY   +    + +
Sbjct: 282 A---TCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNAS 338

Query: 224 DKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
             E A +  LE  KT   IDPD ++YS + + Y + +   +AA  ++EM  R    N V 
Sbjct: 339 RLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 397

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           YSSL+      G  D  + + K M++   + +   +  VI +L +LG+ ++A      W+
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEA------WK 451

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
                        LL A                +   G++P   T+  L  G+ + G+ME
Sbjct: 452 -------------LLVA----------------MAAHGLEPGMVTYTTLLEGFSRTGRME 482

Query: 402 KVLECFK 408
              E F+
Sbjct: 483 IAYELFE 489



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDG 439
           +P   TW ++  G+ K  Q+++ L CF+K    +R++V P+ R      N L +      
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEK----MREFVAPNERTYNVVVNGLCKARLTSK 59

Query: 440 AEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKMPL---IIVERMQKDNVQMDAET 490
           A  +L  +R+   V+ ++  Y++++  + K G+M     I+ E + +D +  D  T
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVT 115


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 164/375 (43%), Gaps = 12/375 (3%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYEL--NRIVRELRKLKRYKHALEVCEWMELQ 100
           R L+  + +  SA   +R++K +G      +L    +VR  ++LK++    E+ EW+  Q
Sbjct: 17  RGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVR-FKQLKKWNLVSEILEWLRYQ 75

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAE 158
                   D+ + +    K+   + AE     L      P+  S  AL+ SY +  K   
Sbjct: 76  NWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNN 135

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ----MLQELKKNTSPDVVTYNL 214
           AEA+  +M   G     + Y  +L  ++   +  +  +    +L E K    PD   Y++
Sbjct: 136 AEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHM 195

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       + E A K F  +    +    ++Y++L S     +   + +    +M++  
Sbjct: 196 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSD 252

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            + + V+Y+ L+  Y     ++E L ++++M+    +     Y  ++ +    G  E+A+
Sbjct: 253 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 312

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            ++          D      +L+AY+N + +E AE F+ R+   G +P   T+  L  GY
Sbjct: 313 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGY 372

Query: 395 LKKGQMEKVLECFKK 409
            K   +EK++E ++K
Sbjct: 373 AKANDVEKMMEVYEK 387



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 112/283 (39%), Gaps = 42/283 (14%)

Query: 126 AENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE L D+ + P          +++ Y +     +A  +   M   G  +  + YN 
Sbjct: 171 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNS 230

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++   S  ++ K+   +Q  + +  PDVV+Y                            
Sbjct: 231 LMSFETSYKEVSKIYDQMQ--RSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGV 288

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A A     E A+  F  +++ +I PD  SY+T+ S Y+     E A  
Sbjct: 289 RPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEK 348

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             K ++      N V Y +L+  Y      ++++ +++KM     K N    T ++ +  
Sbjct: 349 FFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASG 408

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
           +   F  A   Y E ES     D +  N+LL+    +++LE A
Sbjct: 409 RCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEA 451


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 165/394 (41%), Gaps = 45/394 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQM 197
           T + ++HSY +  +   A+ ++ +M +    +C  P    +N +++     G +D    +
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEK----RCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           +  +  +   P +VTYN  L         + A++ F  + +  + PD  S++ L   + +
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   ++A    KEM+ R    + V++S L+ L++  G  D      ++M  L    +   
Sbjct: 275 VGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVI 334

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT VI    + G   +A  + DE        D    N LL     +++L  AE   N + 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEME 394

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----------------GSVRK---- 416
            +G+ P   T+  L  GY ++G  E  L+ F   +                G  RK    
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 417 -----W--------VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
                W        +P+H   +   +   E+G ++ A   L  +   G++ +   YNS++
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 463 RTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL 494
           + Y ++G  K     +++M++DNV  D  T   L
Sbjct: 515 KGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTL 548



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 160/399 (40%), Gaps = 7/399 (1%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N +++ L K +R+  A EV   M+ Q  +      + + +    ++  +  A  F++ + 
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRTMD-QCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQ 289

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
            +   PD  S   L+  + +  +   A A + +M   G +   + Y  ++  +   G + 
Sbjct: 290 HRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMS 349

Query: 193 KVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++  E+      PDVVTYN  L     Q+    AEK   E+++  + PD  +++TL 
Sbjct: 350 EALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLI 409

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y +    E A      + ++  R + V Y+SL+      G   +   +W  M +    
Sbjct: 410 HGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL 469

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ +I S  + G+ E A    DE        + R  N ++  Y     ++  + F
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQF 529

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
             ++    + P   T+  L  GY+K+  M      F   I       PD        N  
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFN--IMEKEMVRPDAVTYNMIINGF 587

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            EQG++  A  +   + ++G       Y SL+  +  AG
Sbjct: 588 SEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             +A   F+ L  +   PD  T ++L+    +    A+A  L + M     L   + Y+ 
Sbjct: 418 FENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSI 477

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKT 238
           +++ +   GQ++     L E+ KK   P++ TYN  +   C S N K+  ++   ++++ 
Sbjct: 478 LIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKK-GQQFLQKMRQD 536

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            + PD I+++TL   YIK E    A      MEK   R + V Y+ +++ ++  G   + 
Sbjct: 537 NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDA 596

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            R++K M     + +   Y  +I+  V  G  ++A  ++DE
Sbjct: 597 GRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDE 637



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/343 (19%), Positives = 140/343 (40%), Gaps = 22/343 (6%)

Query: 140 PDTCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPY---NHMLNLYISNGQLDKVP 195
           P     L+ +Y Q++K  EA EA    +      + P+P    N +L +    G     P
Sbjct: 87  PQVFDLLIRTYTQSRKPREAFEAFRLLLDH----RVPVPASASNALLAVLSRAGW----P 138

Query: 196 QMLQE-----LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            + QE     L  ++  +  T N+ + +     + + A+    E++K  + PD ++++ L
Sbjct: 139 HLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVL 198

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
                +    + A   +  M  R  +   V Y+S+L         D+   +++ M     
Sbjct: 199 IDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSV 258

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             +   +  +I    ++GE ++A   Y E +    T D    + L+  +  R +++ A +
Sbjct: 259 APDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGA 318

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           +   +   G+ P    + ++  G+ + G M + L    + +G     +PD        N 
Sbjct: 319 YLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGF--GCLPDVVTYNTLLNG 376

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           L +Q  +  AE LL  +   G V+ ++  + +L+  Y + G  
Sbjct: 377 LCKQHRLLDAEKLLNEMEERG-VTPDLCTFTTLIHGYCRQGNF 418



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           E LP+ +    T S L+ S+ +  +  +A   +++M + G L     YN ++  Y  +G 
Sbjct: 467 EILPNHI----TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           + K  Q LQ++++ N  PD++T+N  +     + +   A   F  ++K  + PD ++Y+ 
Sbjct: 523 VKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNM 582

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           + + + +    + A    K M       +R  Y SL++ +   G   +  ++  +M+
Sbjct: 583 IINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMI 639



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +D   +   +  A  F + +  K   P+  T ++++  Y ++    + +  ++KM 
Sbjct: 475 YSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMR 534

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
           +       + +N +++ YI    +     +   ++K    PD VTYN+ +   + Q + +
Sbjct: 535 QDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQ 594

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
            A + F  +  + I+PD  +Y +L + ++     ++A     EM  R
Sbjct: 595 DAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 164/375 (43%), Gaps = 12/375 (3%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYEL--NRIVRELRKLKRYKHALEVCEWMELQ 100
           R L+  + +  SA   +R++K +G      +L    +VR  ++LK++    E+ EW+  Q
Sbjct: 74  RGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVR-FKQLKKWNLVSEILEWLRYQ 132

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAE 158
                   D+ + +    K+   + AE     L      P+  S  AL+ SY +  K   
Sbjct: 133 NWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNN 192

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ----MLQELKKNTSPDVVTYNL 214
           AEA+  +M   G     + Y  +L  ++   +  +  +    +L E K    PD   Y++
Sbjct: 193 AEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHM 252

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       + E A K F  +    +    ++Y++L S     +   + +    +M++  
Sbjct: 253 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSD 309

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            + + V+Y+ L+  Y     ++E L ++++M+    +     Y  ++ +    G  E+A+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 369

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            ++          D      +L+AY+N + +E AE F+ R+   G +P   T+  L  GY
Sbjct: 370 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGY 429

Query: 395 LKKGQMEKVLECFKK 409
            K   +EK++E ++K
Sbjct: 430 AKANDVEKMMEVYEK 444



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 42/284 (14%)

Query: 126 AENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE L D+ + P          +++ Y +     +A  +   M   G  +  + YN 
Sbjct: 228 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNS 287

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++   S  ++ K+   +Q  + +  PDVV+Y                            
Sbjct: 288 LMSFETSYKEVSKIYDQMQ--RSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGV 345

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A A     E A+  F  +++ +I PD  SY+T+ S Y+     E A  
Sbjct: 346 RPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEK 405

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             K ++      N V Y +L+  Y      ++++ +++KM     K N    T ++ +  
Sbjct: 406 FFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASG 465

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
           +   F  A   Y E ES     D +  N+LL+    +++LE A+
Sbjct: 466 RCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAK 509


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 158/374 (42%), Gaps = 41/374 (10%)

Query: 133 LPDKMRGPDT-C-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           L   M  PD  C + L+ +Y + K+  EAE     M +   L     +N ++  Y   GQ
Sbjct: 92  LQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           L++  ++L E+K+ N SP +VTYN +L         + AE  F E++   + P   +++ 
Sbjct: 152 LERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTL 211

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL------------------------ 285
           + ++Y K     KA    + M K  C  +   Y++L                        
Sbjct: 212 MINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVG 271

Query: 286 -----------LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
                      L  Y+  G+      +++ M+    K +   Y  +I +  + G    A+
Sbjct: 272 FVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQ 331

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            IYD  + +      +   +LL+A++   ++  AE+F  RL + G++P    +  L   Y
Sbjct: 332 AIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAY 391

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
              G+M+K+   ++   GSV K  PD   +    N   + G I+ AE +  +L + G   
Sbjct: 392 GNSGRMDKMESLYESMQGSVCK--PDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTP 449

Query: 455 TEI-YNSLLRTYAK 467
             + + SL+  Y+K
Sbjct: 450 DVMSWTSLMGAYSK 463



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 148/373 (39%), Gaps = 38/373 (10%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF-- 130
           +L   V E R+ ++++ A+ + EW+      K   G + + +D   + +  + AEN F  
Sbjct: 67  DLMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHL 126

Query: 131 ----ENLPDKM----------RG--------------PDTCSALLHSY-----VQNKKSA 157
               + LP +           RG                 CS  L +Y     V NK  +
Sbjct: 127 MKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGS 186

Query: 158 --EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNL 214
              AE +  +M   G       +  M+N+Y       K   + Q ++K    P + TY  
Sbjct: 187 WQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTA 246

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            + A A + +   AE+ F EL+     PD  +Y+ L   Y +   P  A    + M +  
Sbjct: 247 LINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAG 306

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            + + V+Y+ L+  +   G   +   I+  M  +  K     +  ++S+ VK G    AE
Sbjct: 307 VKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAE 366

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           N     ES+    D  + N LL AY N  +++  ES Y  +     KP   T   L   Y
Sbjct: 367 NFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVY 426

Query: 395 LKKGQMEKVLECF 407
            + G +E+  E F
Sbjct: 427 AQGGYIERAEEIF 439


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 180/419 (42%), Gaps = 26/419 (6%)

Query: 56  AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115
           ++ M  + + G+     +  R+VR        KH L+          I   S  Y    D
Sbjct: 159 SVLMNAYTDSGYFSDAIQCFRLVR--------KHNLQ----------IPFHSCGYL--FD 198

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLK 173
            + K+   S A  F+E + D    PD C  + L+H   +  K  EA+ L  ++ + G   
Sbjct: 199 RLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRP 258

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
             + +N ++N Y  +G LD+  ++ + + +N   PDV TY++ +     +   + A K F
Sbjct: 259 TVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLF 318

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
           LE+    + P+ ++++TL + +      +      ++M ++  + + + Y++L++    +
Sbjct: 319 LEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKV 378

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E  ++  +M     K +   YT +I    K G+ E A  I  E        D    
Sbjct: 379 GDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAF 438

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
             L++ +    Q+  AE     ++  GIKP   T+ ++  G+ KKG ++   +  K+   
Sbjct: 439 TALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM-- 496

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
                VP         N L +QG +  A  LL  + N G V  +I YN LL    +A K
Sbjct: 497 QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWK 555



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 148/334 (44%), Gaps = 8/334 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C  L    ++   ++ A A  E++ +CG+      +N +++      ++++   +  E+
Sbjct: 192 SCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI 251

Query: 202 -KKNTSPDVVTYNLWLAA-CASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            K+   P VV++N  +   C S N D+    K F+   + ++ PD  +YS L +   K  
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFM--MENRVFPDVFTYSVLINGLCKEG 309

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A     EM  R    N V +++L++ +   G  D  + I+++M+    K +   Y 
Sbjct: 310 QLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYN 369

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I+ L K+G+  +A+ +  E        D     +L+        LE A      +V +
Sbjct: 370 TLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKE 429

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GI+     +  L  G+ ++GQ+ +     ++ + +  K  PD    T   +   ++GD+ 
Sbjct: 430 GIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK--PDDATYTMVIHGFCKKGDVK 487

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
               LL  ++  GHV   + YN LL    K G+M
Sbjct: 488 TGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 105/230 (45%), Gaps = 9/230 (3%)

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK--KMMSLFAKMNDAEYTCVISSLVKL 327
           +E R   ++ + +S L++ YT+ GY  + ++ ++  +  +L    +   Y  +   L+KL
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGY--LFDRLMKL 203

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
                A   Y+E        D    N+L+      +++  A+  +  +  +G++P   ++
Sbjct: 204 NLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSF 263

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  GY K G +++     K+ +   R + PD    +   N L ++G +D A  L + +
Sbjct: 264 NTLINGYCKSGNLDQGFR-LKRFMMENRVF-PDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVL 494
            + G V  ++ + +L+  +   G+  + + I ++M +  V+ D  T   L
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 184/453 (40%), Gaps = 62/453 (13%)

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEA-EALM 163
           S  YA+ +D  ++      A  FF  L       D   A  LL  + + K++ EA + L+
Sbjct: 111 SHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILL 170

Query: 164 EKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
            +  E G +     Y+ +L        +GQ D + +M+ E     SPDVV YN  +    
Sbjct: 171 HRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFF 230

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
            + D   A   F E+ +  I PD+++YS++     K    +KA   L++M  +    N  
Sbjct: 231 KEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNW 290

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++L+  Y++ G   E +R++K+M       +   +  ++ SL K G+ ++A +++D  
Sbjct: 291 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTM 350

Query: 341 ESISGT-------------------------------GDPRVP-----NILLAAYINRNQ 364
            ++ G                                GD   P     N+L+ AY N   
Sbjct: 351 -AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           L+ A   +N +   G+KP   T+  +     + G+M+  +E F + I   +   PD    
Sbjct: 410 LDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMID--QGVAPDKYAY 467

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM------------ 471
                     G +  A+ L+  + N G H+   +++S++    K G++            
Sbjct: 468 HCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVN 527

Query: 472 ----PLIIVERMQKDNVQMDAETQKVLKITSEM 500
               P  +V  M  D   +  + +K L++   M
Sbjct: 528 VGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 132/280 (47%), Gaps = 5/280 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T + L+ S  +  K  EA  + + M+  G       YN MLN Y + G L 
Sbjct: 321 LPDVV----TFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 376

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +P + T+N+ + A A+    + A   F E++   + P+ ++Y+T+ 
Sbjct: 377 DMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVI 436

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY  L+  +   G   +   +  ++M+    
Sbjct: 437 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMH 496

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++       V ++L+  Y    ++E A   
Sbjct: 497 LDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/379 (19%), Positives = 153/379 (40%), Gaps = 20/379 (5%)

Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYV-------QNKKSAEAEALMEKMSECGFLKC 174
           G + A   F     + +GP   S   H+Y        +  +   A A   ++   G    
Sbjct: 86  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVD 145

Query: 175 PLPYNHMLNLYISNGQLDKVPQML--QELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
            +  NH+L  +    + D+   +L  +  +    PDV +Y++ L +   Q     A+   
Sbjct: 146 IIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL 205

Query: 233 LELKK--TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             + +      PD ++Y+T+   + K     KA    KEM +R    + V YSS++    
Sbjct: 206 RMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                D+     ++M++     N+  Y  +I      G++++A  ++ E    S   D  
Sbjct: 266 KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 325

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N+L+ +     +++ A   ++ +  KG  P   ++ ++  GY  KG +  + + F   
Sbjct: 326 TFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 385

Query: 411 IG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
           +G  +   +    ++  AY      G +D A  +   +R+ G   +   Y +++    + 
Sbjct: 386 LGDGIAPVICTFNVLIKAYANC---GMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRI 442

Query: 469 GKMPLIIVERMQKDNVQMD 487
           GKM     + M+K N  +D
Sbjct: 443 GKMD----DAMEKFNQMID 457



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/332 (18%), Positives = 141/332 (42%), Gaps = 7/332 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +  + +I  +  A   F  + D+   PD  +   L+  +  +    +A+ L+ ++ 
Sbjct: 432 YTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM 491

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDK 225
             G     + ++ ++N     G++    Q + +L  N    P  V Y++ +         
Sbjct: 492 NNGMHLDIVLFSSIINNLCKLGRVMDA-QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKM 550

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A + F  +    I+P+ + Y TL + Y K+   ++  +  +EM ++  + + + Y+ +
Sbjct: 551 EKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +      G        + +M      MN   Y+ V+  L K   F++A  ++ E  +++ 
Sbjct: 611 IDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N ++A      ++E A+  +  +   G+ PC  T+ ++    +K+G +E+  +
Sbjct: 671 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            F     +     PD RL+     +L ++ +I
Sbjct: 731 MFSSMQNA--GCEPDSRLLNHVVRELLKKNEI 760


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 164/375 (43%), Gaps = 12/375 (3%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYEL--NRIVRELRKLKRYKHALEVCEWMELQ 100
           R L+  + +  SA   +R++K +G      +L    +VR  ++LK++    E+ EW+  Q
Sbjct: 81  RGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVR-FKQLKKWNLVSEILEWLRYQ 139

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAE 158
                   D+ + +    K+   + AE     L      P+  S  AL+ SY +  K   
Sbjct: 140 NWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNN 199

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ----MLQELKKNTSPDVVTYNL 214
           AEA+  +M   G     + Y  +L  ++   +  +  +    +L E K    PD   Y++
Sbjct: 200 AEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHM 259

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       + E A K F  +    +    ++Y++L S     +   + +    +M++  
Sbjct: 260 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIYDQMQRSD 316

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            + + V+Y+ L+  Y     ++E L ++++M+    +     Y  ++ +    G  E+A+
Sbjct: 317 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 376

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            ++          D      +L+AY+N + +E AE F+ R+   G +P   T+  L  GY
Sbjct: 377 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGY 436

Query: 395 LKKGQMEKVLECFKK 409
            K   +EK++E ++K
Sbjct: 437 AKANDVEKMMEVYEK 451



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 42/284 (14%)

Query: 126 AENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE L D+ + P          +++ Y +     +A  +   M   G  +  + YN 
Sbjct: 235 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNS 294

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++   S  ++ K+   +Q  + +  PDVV+Y                            
Sbjct: 295 LMSFETSYKEVSKIYDQMQ--RSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGV 352

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A A     E A+  F  +++ +I PD  SY+T+ S Y+     E A  
Sbjct: 353 RPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEK 412

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             K ++      N V Y +L+  Y      ++++ +++KM     K N    T ++ +  
Sbjct: 413 FFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASG 472

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
           +   F  A   Y E ES     D +  N+LL+    +++LE A+
Sbjct: 473 RCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAK 516


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 175/399 (43%), Gaps = 9/399 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E      ++ +L + ++M+ Q   K     Y + + L+ +   L      F+ +P +
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQ 170

Query: 137 --MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
              R   + +AL+++Y +N +   +  L+++M         L YN ++N   + G LD  
Sbjct: 171 GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINA-CARGGLDWE 229

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +  E++ +   PD+VTYN  L+ACA +   + AE  F  +    I PD  +YS L 
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   EK +  L EM       +  +Y+ LL  Y   G   E + ++ +M +    
Sbjct: 290 ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCT 349

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ +++   + G ++    ++ E +S +   D    NIL+  +      +   + 
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++ +V + I+P   T+E + +   K G  E   +  +    +    VP  +  T      
Sbjct: 410 FHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM--TANDIVPSSKAYTGVIEAF 467

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            +    + A     T+   G + S E Y+SLL ++A+ G
Sbjct: 468 GQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGG 506



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 133/311 (42%), Gaps = 6/311 (1%)

Query: 120 IRGLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           IRGL   AE  F  + D    PD  T S L+ ++ + ++  +   L+ +M+  G L    
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDIT 318

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +L  Y  +G + +   +  +++    +P+  TY++ L         +   + FLE+
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K +  DPD  +Y+ L  ++ +    ++  T   +M +     +   Y  ++      G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++  +I + M +     +   YT VI +  +   +E+A   ++    +         + L
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSL 498

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L ++     ++ +E+  +RLV  GI     T+      Y + G+ E+ ++ +     S  
Sbjct: 499 LYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS-- 556

Query: 416 KWVPDHRLITA 426
           +  PD R + A
Sbjct: 557 RCDPDERTLEA 567



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y+  ++   K+R L    +    +      PD  S   LL +Y ++    EA  +  +M 
Sbjct: 285 YSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------- 202
             G       Y+ +LNL+  +G+ D V Q+  E+K                         
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 203 -----------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                      +N  PD+ TY   + AC      E A K    +    I P   +Y+ + 
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + +  L E+A      M +     +   Y SLL  +   G   E   I  +++     
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIP 524

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            N   +   I +  + G+FE+A   Y + E      D R    +L+ Y
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVY 572


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 149/344 (43%), Gaps = 6/344 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P +C+ALLH   +  +   +    + M   G  +    YN M++     G L+    +  
Sbjct: 220 PRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFT 279

Query: 200 ELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++K+   +PD+VTYN  +         +     F ++K    DPD I+Y+ L + + K E
Sbjct: 280 QMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFE 339

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              KA   L EM+    + N V YS+ +  +   G   E ++ +  M  +    N+  YT
Sbjct: 340 RMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT 399

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I +  K G   +A  + +E        +      LL       +++ AE  +  ++  
Sbjct: 400 SLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA 459

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P   T+  L  G++K  +ME   +  K+      K  PD  L       L  +  ++
Sbjct: 460 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK--PDLLLYGTILWGLCNESRLE 517

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERM 479
            A+ L+  ++ +G + +  IY +L+  Y K+G+    L ++E M
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 561



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 3/303 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL    +  +  EAE +   M   G       Y  +++ +I   +++    +L+E+
Sbjct: 432 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K K   PD++ Y   L    +++  E A+    E+K++ I+ + + Y+TL   Y K    
Sbjct: 492 KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 551

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A T L+EM         V Y +L+      G   E +  + +M  +  + N A YT +
Sbjct: 552 TEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTAL 611

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K   FE A+ ++DE        D      L+   +    L+ A +  +R++  G+
Sbjct: 612 VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGM 671

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +     +  L WG    GQ++K      + IG  +  +PD  +      K    G +D A
Sbjct: 672 ELDLHAYTALIWGLSHSGQVQKARNLLDEMIG--KGVLPDEVVYMCLIKKYYALGKVDEA 729

Query: 441 EHL 443
             L
Sbjct: 730 LEL 732



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 3/298 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K   L  A + F  + +    PD  T ++L+  + +     E   + E+M 
Sbjct: 258 YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK 317

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           +       + YN ++N +    ++ K  + L E+K N   P+VVTY+ ++ A   +   +
Sbjct: 318 DADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 377

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F+++++  + P+  +Y++L     K     +A   ++E+ +   + N V Y++LL
Sbjct: 378 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   E   +++ M++     N   YT ++   +K  E E A++I  E +     
Sbjct: 438 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            D  +   +L    N ++LE A+     +   GI      +  L   Y K GQ  + L
Sbjct: 498 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 555


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 7/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SAL+ +Y ++    EA ++   M E G     + YN +++     G +  +V +   E++
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +N   PD +T+N  LA C+     E A   F E+   +I+ D  SY+TL     K    +
Sbjct: 332 RNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMD 391

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   L +M  +    N V+YS+++  +   G  DE L ++ +M  L   ++   Y  ++
Sbjct: 392 LAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLL 451

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   K+G  E+A +I  E  S+    D    N LL  Y  + + +  +  +  +  + + 
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVL 511

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L  GY K G  ++ +E F++   +  +   D  L +A  + L + G +  A 
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLR--ADVVLYSALIDALCKNGLVGSAV 569

Query: 442 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            L+  +   G +S  +  YNS++  + ++  M
Sbjct: 570 SLIDEMTKEG-ISPNVVTYNSIIDAFGRSATM 600



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 3/277 (1%)

Query: 129 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           FF+ +      PD  T ++LL    +      A  L ++MS     +    YN +L+   
Sbjct: 326 FFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAIC 385

Query: 187 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ+D   ++L ++  K   P+VV+Y+  +   A     + A   F E++   I  D +
Sbjct: 386 KGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRV 445

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY+TL S+Y K+   E+A   L+EM     +K+ V Y++LL  Y   G  DEV +++ +M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM 505

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                  N   Y+ +I    K G +++A  ++ E++S     D  + + L+ A      +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             A S  + +  +GI P   T+  +   + +   ME+
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMER 602



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 3/229 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   LD I K   +  A      +P K   P+  S   ++  + +  +  EA  L  +M 
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
                   + YN +L++Y   G+ ++   +L+E+       DVVTYN  L     Q   +
Sbjct: 437 YLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             +K F E+K+  + P+ ++YSTL   Y K  L ++A    +E +    R + V YS+L+
Sbjct: 497 EVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALI 556

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
                 G     + +  +M       N   Y  +I +  +    E++ +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 31/290 (10%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQY-DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135
           ++    K  R+  AL +  + E++Y +I L    Y   L + +K+     A +    +  
Sbjct: 415 VIDGFAKAGRFDEALNL--FGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMAS 472

Query: 136 KMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
                D  T +ALL  Y +  K  E + +  +M     L   L Y+ +++ Y   G   +
Sbjct: 473 VGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKE 532

Query: 194 VPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
             ++ +E K      DVV Y+  + A        +A     E+ K  I P+ ++Y+++  
Sbjct: 533 AMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592

Query: 253 LYIKMELPEKAA------------TTLKEMEKRTCRKNRVA--YSSLLSLYTNMGYKDE- 297
            + +    E++A            + L E+ +     NRV   +  L S   N   KD  
Sbjct: 593 AFGRSATMERSADYSNGGSLPFSSSALSELTE--TEGNRVIQLFGQLTSEGNNRMTKDCK 650

Query: 298 --------VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                   +L +++KM  L  K N   ++ ++++  +   FE A  + +E
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEE 700


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 7/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SAL+ +Y ++    EA ++   M E G     + YN +++     G +  +V +   E++
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +N   PD +T+N  LA C+     E A   F E+   +I+ D  SY+TL     K    +
Sbjct: 332 RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMD 391

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   L +M  +    N V+YS+++  +   G  DE L ++ +M  L   ++   Y  ++
Sbjct: 392 LAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLL 451

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   K+G  E+A +I  E  S+    D    N LL  Y  + + +  +  +  +  + + 
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L  GY K G  ++ +E F++   +  +   D  L +A  + L + G +  A 
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLR--ADVVLYSALIDALCKNGLVGSAV 569

Query: 442 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            L+  +   G +S  +  YNS++  + ++  M
Sbjct: 570 SLIDEMTKEG-ISPNVVTYNSIIDAFGRSATM 600



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 128/277 (46%), Gaps = 3/277 (1%)

Query: 129 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           FF+ +      PD  T ++LL    +      A  L ++M+     +    YN +L+   
Sbjct: 326 FFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385

Query: 187 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ+D   ++L ++  K   P+VV+Y+  +   A     + A   F E++   I  D +
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY+TL S+Y K+   E+A   L+EM     +K+ V Y++LL  Y   G  DEV +++ +M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                  N   Y+ +I    K G +++A  I+ E++S     D  + + L+ A      +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             A S  + +  +GI P   T+  +   + +   M++
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 3/229 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   LD I K   +  A      +P K   P+  S   ++  + +  +  EA  L  +M 
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + YN +L++Y   G+ ++   +L+E+       DVVTYN  L     Q   +
Sbjct: 437 YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             +K F E+K+  + P+ ++YSTL   Y K  L ++A    +E +    R + V YS+L+
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
                 G     + +  +M       N   Y  +I +  +    +++ +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605


>gi|302801852|ref|XP_002982682.1| hypothetical protein SELMODRAFT_421991 [Selaginella moellendorffii]
 gi|300149781|gb|EFJ16435.1| hypothetical protein SELMODRAFT_421991 [Selaginella moellendorffii]
          Length = 414

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 190/455 (41%), Gaps = 64/455 (14%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           + K  L  ++ +LR   ++  A E+C+WM      ++   D+ + L+L+ +I    +   
Sbjct: 1   MEKKHLLNVIYKLRITAKFGQAREICDWMIRNKVFEIEESDHVLLLELVGRISKFQATRC 60

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           F+E +P ++R     +A+L  + +      AE  M +M     +    PYN ML++Y   
Sbjct: 61  FWE-MPAELRSEAAYTAMLQVFARWHAIPAAEDTMSEMKSLNLITRVEPYNIMLDMYKRK 119

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAA---CASQNDKETAEKAFLELKKTKIDPDW 244
            + DKV  M  EL     +PD  TY + L A       +  E   + FL+          
Sbjct: 120 NEDDKVRAMYDELSSLGVAPDAHTYLIVLRAKQKIGGFDGIEAEVRKFLD---------- 169

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
                                     E+ T R+    Y  +L +YT +     +  +   
Sbjct: 170 --------------------------EQLTSRQPLFIYECMLRIYTLLRDLTAIENLRSI 203

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAY 359
           ++  F K + + Y C++ +  +LGE E+AE +++E       G+    NI     ++A Y
Sbjct: 204 LLKTFKKFSSSSYNCLLDAYRQLGEVERAERLFNE------IGNKFTLNIQSYRAMIAVY 257

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-----IGSV 414
            +  ++E A   Y +L   G +     +  +  GY+        L  + KA     +G  
Sbjct: 258 ASNGRMEKANELYKQLFRAGFECHPAIYHAMVAGYIDARDHSNALIQYGKAWDRSLLGHP 317

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
           +   P           L EQGD   AE ++  L+     S  E+YN LL+ Y KA ++P+
Sbjct: 318 K---PLRATTLLVLRVLAEQGDFSRAESIVRDLKRERQGSDVEVYNWLLKAYIKA-EVPV 373

Query: 474 IIVE-RMQKDNVQMDAETQKVLKITSEMPVSEVSS 507
              + RM    V+ + E+ ++L+  + +P  +V +
Sbjct: 374 FGFDGRMLAAGVRPNDESLELLRRIN-LPAKKVET 407


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 116/231 (50%), Gaps = 1/231 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  +   G +DKV ++++E+ ++   PD+ ++N  +AA A     E   + F  +K
Sbjct: 101 YNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMK 160

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD ++Y+TL  ++ +  + ++A    +EM    C+ +   YS L+S+Y   G   
Sbjct: 161 AAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVA 220

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L I+ ++     + N   YT +IS+ +  G  E++   + + E+     D  + N ++
Sbjct: 221 DALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMI 280

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
            AY     +  A +  +RL  +G+ P   ++ ++  G+L  G +++ L  +
Sbjct: 281 DAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAY 331



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 7/188 (3%)

Query: 121 RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           RGL      F N+      PD  T + L+  + ++    EA  + E+M           Y
Sbjct: 151 RGL----QVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVY 206

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           + ++++Y   G +     +   L+ +   P++VTY   ++A   +   E + K F +++ 
Sbjct: 207 SLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEA 266

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
                D    +T+   Y K  +   AA  L  +  +    NR +Y+ ++  + + G+ DE
Sbjct: 267 YGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDE 326

Query: 298 VLRIWKKM 305
            L  +  M
Sbjct: 327 ALAAYASM 334


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 168/396 (42%), Gaps = 25/396 (6%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K R +  AE     + DK   PD  T +A++H Y  +    E+  +  KM+  G 
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + +N  ++    +G+     ++ Q +  K   PD+V+Y++ L   A++        
Sbjct: 366 IPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNN 425

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F  +    I  +   ++ L S + K  + ++A     EM+ +  R + V YS+L+S + 
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFC 485

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            MG   + +  + +M+S+  + N   Y  +I      G+  KA+ +  E  S    G PR
Sbjct: 486 RMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS---KGIPR 542

Query: 351 VPNILLAAYI-----NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            PNI+  + I     N  ++  A   +N ++  G +P   T+  L  GY   G+MEK   
Sbjct: 543 -PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFG 601

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH----VSTEIYNS 460
                +   +   V  +  + + Y K    G ID     L+  R   H     +T  Y+ 
Sbjct: 602 VLDAMVSVGIEPDVVTYNTLVSGYCK---SGKIDDG---LILFREMLHKKVKPTTVTYSI 655

Query: 461 LLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           +L     AG+      +   M      +D +T K+L
Sbjct: 656 VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKIL 691



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 157/369 (42%), Gaps = 9/369 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEA-EALMEKM 166
           Y + +D   + R       FF  L        T  A   L      K++ EA + L+ +M
Sbjct: 159 YGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRM 218

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK---NTSPDVVTYNLWLAACASQN 223
           S+ G +   + YN ++     + +  +   M+Q + K     SPDVV++N  +     Q 
Sbjct: 219 SDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 278

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           +   A     E+ +  ++PD ++Y+++     K    +KA   L++M  +    + + Y+
Sbjct: 279 EVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYT 338

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +++  Y+  G+  E  ++++KM S         +   +SSL K G  + AE I+    + 
Sbjct: 339 AIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTK 398

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D    +ILL  Y    +     + ++ +  KGI      + +L   + K+G M++ 
Sbjct: 399 GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEA 458

Query: 404 LECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
           +  F +  G  VR  V  +  + +A+ ++      D  E     +      +T +Y+SL+
Sbjct: 459 MLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLA--DAMEKFSQMISIGLEPNTVVYHSLI 516

Query: 463 RTYAKAGKM 471
             +   G +
Sbjct: 517 HGFCMHGDL 525



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 123/298 (41%), Gaps = 10/298 (3%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQMLQ- 199
           +L+H +  +    +A+ L+ +M   G    P P    ++ +++   + G++     +   
Sbjct: 514 SLIHGFCMHGDLVKAKELVSEMMSKGI---PRPNIVFFSSIIHSLCNEGRVMDAHDVFNL 570

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            +     P +VT+N  +         E A      +    I+PD ++Y+TL S Y K   
Sbjct: 571 VIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGK 630

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            +      +EM  +  +   V YS +L    + G      +++ +M+     ++   Y  
Sbjct: 631 IDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKI 690

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  L +    ++A  ++ +  ++    D  + N ++ A     + E A   +  + T G
Sbjct: 691 LLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSG 750

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           + P  +T+ ++    LK+G +E+    F     S     P  RL+      L ++GDI
Sbjct: 751 LVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKS--GCAPSSRLLNDIIRMLLQKGDI 806


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 149/344 (43%), Gaps = 6/344 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P +C+ALLH   +  +   +    + M   G  +    YN M++     G L+    +  
Sbjct: 21  PRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFT 80

Query: 200 ELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++K+   +PD+VTYN  +         +     F ++K    DPD I+Y+ L + + K E
Sbjct: 81  QMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFE 140

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              KA   L EM+    + N V YS+ +  +   G   E ++ +  M  +    N+  YT
Sbjct: 141 RMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT 200

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I +  K G   +A  + +E        +      LL       +++ AE  +  ++  
Sbjct: 201 SLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA 260

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P   T+  L  G++K  +ME   +  K+      K  PD  L       L  +  ++
Sbjct: 261 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK--PDLLLYGTILWGLCNESRLE 318

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERM 479
            A+ L+  ++ +G + +  IY +L+  Y K+G+    L ++E M
Sbjct: 319 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 3/298 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K   L  A + F  + +    PD  T ++L+  + +     E   + E+M 
Sbjct: 59  YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK 118

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           +       + YN ++N +    ++ K  + L E+K N   P+VVTY+ ++ A   +   +
Sbjct: 119 DADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 178

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F+++++  + P+  +Y++L     K     +A   ++E+ +   + N V Y++LL
Sbjct: 179 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   E   +++ M++     N   YT ++   +K  E E A++I  E +     
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            D  +   +L    N ++LE A+     +   GI      +  L   Y K GQ  + L
Sbjct: 299 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 356



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 18/383 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++    K +R   A E    M+    +K     Y+  +D   K   L  A  FF ++ 
Sbjct: 130 NALINCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 188

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P+  T ++L+ +  +    AEA  L+E++ + G     + Y  +L+     G++ 
Sbjct: 189 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 248

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++ +  L    +P+  TY   +       + E A+    E+K+  I PD + Y T+ 
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
                    E+A   + E+++     N V Y++L+  Y   G   E L + ++M+ L   
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDL--- 365

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                    +  L K   FE A+ ++DE        D      L+   +    L+ A + 
Sbjct: 366 ---------VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNL 416

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            +R++  G++     +  L WG    GQ++K      + IG  +  +PD  +      K 
Sbjct: 417 RDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIG--KGVLPDEVVYMCLIKKY 474

Query: 432 EEQGDIDGAEHLLVTLRNAGHVS 454
              G +D A  L   +   G ++
Sbjct: 475 YALGKVDEALELQNEMAKRGMIT 497


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 175/400 (43%), Gaps = 10/400 (2%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146
           ++ AL+  EW  L       S   AV L ++ + R  S AE  F     +       +A+
Sbjct: 170 WRRALDAFEW--LARSTAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEGATVQVFNAM 227

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK--VPQMLQELKKN 204
           +  Y ++ +  +A  L++ M + G     + +N ++N    +G L       +L E++++
Sbjct: 228 MGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQS 287

Query: 205 T-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              PDV+TYN  ++AC+  ++ E A   F E+  ++  PD  +Y+ + S++ +    E+A
Sbjct: 288 GLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEA 347

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
                E+ ++    + V Y+SLL  +   G  D+V    ++++    K N+  Y  +I  
Sbjct: 348 ERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHM 407

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
             K+G  + A  +YDE  ++  T D     +++ +    +++  A      +   G+KP 
Sbjct: 408 YGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPT 467

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
              +  L   Y K G+     + F   I S  K  PD        +     G+ +    L
Sbjct: 468 LVAFSALICAYAKGGRRADAEKTFDCMIASGVK--PDRLAYLVMLDVFARSGETEKMLRL 525

Query: 444 LVTLRNAGH-VSTEIYNSLLRTYAKAGKMPLI--IVERMQ 480
             T+ N  +    ++Y  LL   AK  K   I  I++ M+
Sbjct: 526 YRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDME 565



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 42/382 (10%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F  L +K   PD  T ++LL+++ +     + E   E++ + GF K  + YN M++
Sbjct: 347 AERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIH 406

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    +    A K   ++    + P
Sbjct: 407 MYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKP 466

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             +++S L   Y K      A  T   M     + +R+AY  +L ++   G  +++LR++
Sbjct: 467 TLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLY 526

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + MM+   + +D  Y  ++ +L K  + E+ E I  + E +       +  IL+ A    
Sbjct: 527 RTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDMELLCQMSLGVISTILIKARC-- 584

Query: 363 NQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQME--KVLECFKKAIGSVRKWVP 419
             +        +   +G KP   + W ++    + +   E   +LEC +  + S +  + 
Sbjct: 585 --VSQGGKLLKKACLQGYKPDAKSLWSIMNAYVMTEKHEEGLSLLECIRDHVSSSQDLIS 642

Query: 420 DHRLI--------TAAYNKLEEQ-------GDIDGAEHLLVTLRNAG------------- 451
           +  +I         +AY +  ++        + +  EHL+  L  A              
Sbjct: 643 ECSIILLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEHLITCLVEAELFSEACQVFCDMQ 702

Query: 452 ----HVSTEIYNSLLRTYAKAG 469
                 S  IY S++ TY K G
Sbjct: 703 FIGIEASKNIYESIISTYCKLG 724



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 135/314 (42%), Gaps = 17/314 (5%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
            +L ++ +     E   +   M   G+L     Y  M +L   + +   V  M+ E++   
Sbjct: 856  MLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAG 915

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+  +N  L    +  + +   + +  + +  ++PD  +Y+TL  +Y +   PE+  
Sbjct: 916  FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGF 975

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            T L EM KR       +Y SLL+       +++  +++++M S   ++N + Y  ++   
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAEN+    +           +IL+ +Y    Q   AE+  N L +  ++   
Sbjct: 1036 RNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVST 1095

Query: 385  TTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITA---AYNKLEEQGDI 437
              +  +   YLK G     ++K+LE  +  +       PDH++ T    A +  E+  D 
Sbjct: 1096 LPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVE------PDHQVWTCFIRAASLCEQTAD- 1148

Query: 438  DGAEHLLVTLRNAG 451
              A  LL +L++ G
Sbjct: 1149 --AILLLKSLQDCG 1160



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 152/367 (41%), Gaps = 15/367 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K+  ++ A    E++ D    P     SAL+ +Y +  + A+AE   + M 
Sbjct: 436 YTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMI 495

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     L Y  ML+++  +G+ +K+ ++ + +   N  PD   Y + L A A ++  E
Sbjct: 496 ASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCE 555

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             E+   +++        +S   ++++ IK     +    LK+   +  + +  +  S++
Sbjct: 556 EIEEIIQDMELLC----QMSLGVISTILIKARCVSQGGKLLKKACLQGYKPDAKSLWSIM 611

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y      +E L + + +    +   D    C I  L +      A   Y +   +   
Sbjct: 612 NAYVMTEKHEEGLSLLECIRDHVSSSQDLISECSIILLCRKQTSISAYEQYSQRLMLKYP 671

Query: 347 G-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           G +  +   L+   +       A   +  +   GI+     +E +   Y K G  E    
Sbjct: 672 GQNCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHG 731

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI---DGAEHLLVTLRNAGHVSTEIYNSLL 462
               A+ S    +P + +++     +E  G+I     AE L+  LR A  +   I+N+L+
Sbjct: 732 LMDDALQS---GIPLN-ILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGIDRRIWNALI 787

Query: 463 RTYAKAG 469
             YA++G
Sbjct: 788 HAYAESG 794



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N L++A    + LE A + +  ++    +P   T+  +   + + G+ E+    F + + 
Sbjct: 297 NTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVE 356

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             + ++PD     +      ++G++D  EH    L  AG    EI YN+++  Y K G++
Sbjct: 357 --KGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 472 PLII--VERMQKDNVQMDAETQKVL 494
            L +   + M+      DA T  V+
Sbjct: 415 DLAVGLYDEMRAVGCTPDAVTYTVM 439


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 162/342 (47%), Gaps = 11/342 (3%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSA-ENFFENLPDKMRGPDTCSA 145
           ++ ALEV EW+ L++     +   A  L ++ +    S A E F    P         +A
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNA 230

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL---- 201
           ++  Y ++ K ++A+ L++ M + G +   + +N ++N  + +G L   P +  EL    
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGL--TPNLAVELLDMV 288

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 PD +TYN  L+AC+  ++ + A K F +++  +  PD  +Y+ + S+Y +  L 
Sbjct: 289 RNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLA 348

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     E+E +    + V Y+SLL  +      ++V  ++++M  +    ++  Y  +
Sbjct: 349 AEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           I    K G+ + A  +Y + + +SG   D     +L+ +    N+   A +  + ++  G
Sbjct: 409 IHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVG 468

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           IKP   T+  L  GY K G+ E+  + F   + S  K  PD+
Sbjct: 469 IKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTK--PDN 508



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 156/356 (43%), Gaps = 24/356 (6%)

Query: 126  AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
            AE+   NL    R PD  T ++L+ +Y Q      A A+   M   G        N +L+
Sbjct: 771  AESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLH 830

Query: 184  LYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
                +G+L+++  +++EL+    K +   ++   L L A A   +    +K +  +K   
Sbjct: 831  ALCVDGRLEELYVVVEELQDMGFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAG 887

Query: 240  IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
              P    Y  +  L  K +    A   + EME+   +     ++S+L +YT +    + +
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 300  RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI--LL 356
            ++++++     + ++  Y  +I   +      + E  Y   + +   G DP++     L+
Sbjct: 948  QVYQRIKETGLEPDETTYNTLI---IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 357  AAYINRNQLEMAESFYNRLVTKGIK---PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            +A+  +  LE AE  +  L++KG+K     Y T   ++       + EK+L+  K A   
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA--G 1062

Query: 414  VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
            +   +    L+  +Y+     G+   AE +L  L++    ++T  Y+S++  Y ++
Sbjct: 1063 IEPTLATMHLLMVSYSS---SGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/285 (18%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
            +L ++ +     E + +   M   G+L     Y  M+ L     ++     M+ E+++ N
Sbjct: 863  MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
               ++  +N  L    +  D +   + +  +K+T ++PD  +Y+TL  +Y +   PE+  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              +++M           Y SL+S +      ++  +++++++S   K++ + Y  ++   
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAE +    ++          ++L+ +Y +    + AE   + L    ++   
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTT 1102

Query: 385  TTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
              +  +   YL+       +E++LE  K+ +       PDHR+ T
Sbjct: 1103 LPYSSVIDAYLRSKDYNSGIERLLEMKKEGLE------PDHRIWT 1141



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 1/166 (0%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            DT  +L+ ++ + K   +AE L E++   G       Y+ M+ +   +G   K  ++LQ 
Sbjct: 998  DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057

Query: 201  LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            +K     P + T +L + + +S  + + AEK    LK T+++   + YS++   Y++ + 
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKD 1117

Query: 260  PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
                   L EM+K     +   ++  +   +    K EV+ + K +
Sbjct: 1118 YNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKAL 1163



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 133/324 (41%), Gaps = 29/324 (8%)

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLELKKT 238
           +L  Y S+G+  +  ++L+ LK++ S    ++T  L +  C   N     ++ F      
Sbjct: 615 ILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYF------ 668

Query: 239 KIDP---DWI-----SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             DP    W       Y TL    +  E   +A+    ++    C  +     S++ +Y 
Sbjct: 669 -ADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYC 727

Query: 291 NMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            +G+ +   ++  +  +  F       YT +I +  K   ++KAE++         T D 
Sbjct: 728 KLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDL 787

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLEC 406
           +  N L++AY      E A + +N ++  G  P   +  +L       G++E+   V+E 
Sbjct: 788 KTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEE 847

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTY 465
            +     + K       I    +     G+I   + +  +++ AG++ T  +Y  ++   
Sbjct: 848 LQDMGFKISK-----SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 466 AKAGKM--PLIIVERMQKDNVQMD 487
            K  ++    I+V  M++ N +++
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVE 926


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 154/332 (46%), Gaps = 8/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           ++L+ ++V+   + +A A+   M + G       +N ++N +    ++D V ++ +E++ 
Sbjct: 93  NSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQN 152

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N SP+V+TY++ + A       E A K FL++K     P+  +Y+++     K    +K
Sbjct: 153 QNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDK 212

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    +EM        RV Y+SL+      G  D   +++++M+S   + +   +T ++ 
Sbjct: 213 AFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVY 272

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L   G   +A  I+ E   +    D  + N+L+       +L+ A   +  L   G+ P
Sbjct: 273 GLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVP 332

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGA 440
              T+  L  G  K G++          +G +++    PD  +     + L + G ++ A
Sbjct: 333 DVYTFNALMDGLCKSGRIHDAF----ILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEA 388

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             LL+ +++ G+    + YN+L+    K G++
Sbjct: 389 GQLLLEMQSLGYEPDVVTYNTLIDESCKGGRI 420



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 135/332 (40%), Gaps = 35/332 (10%)

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT-YNLWLAACASQNDKETAEKAFL 233
           P  +  +   Y S G L+K  + L+ ++ +      + YN  + A       + A   + 
Sbjct: 54  PRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYR 113

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            + ++ + PD  +++ L + + K +  +      +EM+ + C  N + YS L+      G
Sbjct: 114 VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCG 173

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             ++ L+++  M S   + N   YT +I  L K G  +KA  +++E  S        V N
Sbjct: 174 GVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYN 233

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA--I 411
            L+       + + A   +  +++KG++P + T+  L +G    G+  +    F++A  +
Sbjct: 234 SLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV 293

Query: 412 GSV--------------------RKW-----------VPDHRLITAAYNKLEEQGDIDGA 440
           G                        W           VPD     A  + L + G I  A
Sbjct: 294 GCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDA 353

Query: 441 EHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
             LL  ++ AG      +YN+L+    K+G++
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRV 385



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 113 HLDLISKIRGL------SSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALME 164
           H+   S + GL      S A   F+   D     D    + L+ +  ++K+  EA  +  
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQN 223
           ++ E G +     +N +++    +G++     +L ++K+   +PDV  YN  +       
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             E A +  LE++    +PD ++Y+TL     K    E A    +E+  +    N V Y+
Sbjct: 384 RVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYN 442

Query: 284 SLLSLYTNMGYKDEVLRIWKKM 305
           ++L+     G  DE  +++  M
Sbjct: 443 TILNGLCMAGRVDEAYKLFNGM 464



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH--LDLISKIRGLSSAENFFEN 132
           N ++  L K KR   A E+  + EL+ D  LV   Y  +  +D + K   +  A     +
Sbjct: 303 NVLIDTLCKSKRLDEAWEI--FGELEED-GLVPDVYTFNALMDGLCKSGRIHDAFILLGD 359

Query: 133 LPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      PD    + L+    ++ +  EA  L+ +M   G+    + YN +++     G+
Sbjct: 360 MKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGR 419

Query: 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK----IDPDWIS 246
           ++   ++ +E+      + VTYN  L         + A K F  +K+      IDPD+++
Sbjct: 420 IEDALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVT 479

Query: 247 YSTL 250
           Y+TL
Sbjct: 480 YTTL 483


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 162/342 (47%), Gaps = 11/342 (3%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSA-ENFFENLPDKMRGPDTCSA 145
           ++ ALEV EW+ L++     +   A  L ++ +    S A E F    P         +A
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNA 230

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL---- 201
           ++  Y ++ K ++A+ L++ M + G +   + +N ++N  + +G L   P +  EL    
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGL--TPNLAVELLDMV 288

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 PD +TYN  L+AC+  ++ + A K F +++  +  PD  +Y+ + S+Y +  L 
Sbjct: 289 RNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLA 348

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     E+E +    + V Y+SLL  +      ++V  ++++M  +    ++  Y  +
Sbjct: 349 AEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           I    K G+ + A  +Y + + +SG   D     +L+ +    N+   A +  + ++  G
Sbjct: 409 IHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVG 468

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           IKP   T+  L  GY K G+ E+  + F   + S  K  PD+
Sbjct: 469 IKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTK--PDN 508



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 156/356 (43%), Gaps = 24/356 (6%)

Query: 126  AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
            AE+   NL    R PD  T ++L+ +Y Q      A A+   M   G        N +L+
Sbjct: 771  AESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLH 830

Query: 184  LYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
                +G+L+++  +++EL+    K +   ++   L L A A   +    +K +  +K   
Sbjct: 831  ALCVDGRLEELYVVVEELQDMGFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAG 887

Query: 240  IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
              P    Y  +  L  K +    A   + EME+   +     ++S+L +YT +    + +
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 300  RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI--LL 356
            ++++++     + ++  Y  +I   +      + E  Y   + +   G DP++     L+
Sbjct: 948  QVYQRIKETGLEPDETTYNTLI---IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 357  AAYINRNQLEMAESFYNRLVTKGIK---PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            +A+  +  LE AE  +  L++KG+K     Y T   ++       + EK+L+  K A   
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA--G 1062

Query: 414  VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
            +   +    L+  +Y+     G+   AE +L  L++    ++T  Y+S++  Y ++
Sbjct: 1063 IEPTLATMHLLMVSYSS---SGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/285 (18%), Positives = 122/285 (42%), Gaps = 11/285 (3%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
            +L ++ +     E + +   M   G+L     Y  M+ L     ++     M+ E+++ N
Sbjct: 863  MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN 922

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
               ++  +N  L    +  D +   + +  +K+T ++PD  +Y+TL  +Y +   PE+  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              +++M           Y SL+S +      ++  +++++++S   K++ + Y  ++   
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAE +    ++          ++L+ +Y +    + AE   + L    ++   
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTT 1102

Query: 385  TTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
              +  +   YL+       +E++LE  K+ +       PDHR+ T
Sbjct: 1103 LPYSSVIDAYLRSKDYNSGIERLLEMKKEGLE------PDHRIWT 1141



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            DT  +L+ ++ + K   +AE L E++   G       Y+ M+ +   +G   K  ++LQ 
Sbjct: 998  DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057

Query: 201  LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            +K     P + T +L + + +S  + + AEK    LK T+++   + YS++   Y++ + 
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKD 1117

Query: 260  PEKAATTLKEMEK 272
                   L EM+K
Sbjct: 1118 YNSGIERLLEMKK 1130



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 133/324 (41%), Gaps = 29/324 (8%)

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLELKKT 238
           +L  Y S+G+  +  ++L+ LK++ S    ++T  L +  C   N     ++ F      
Sbjct: 615 ILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYF------ 668

Query: 239 KIDP---DWI-----SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             DP    W       Y TL    +  E   +A+    ++    C  +     S++ +Y 
Sbjct: 669 -ADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYC 727

Query: 291 NMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            +G+ +   ++  +  +  F       YT +I +  K   ++KAE++         T D 
Sbjct: 728 KLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDL 787

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLEC 406
           +  N L++AY      E A + +N ++  G  P   +  +L       G++E+   V+E 
Sbjct: 788 KTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEE 847

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTY 465
            +     + K       I    +     G+I   + +  +++ AG++ T  +Y  ++   
Sbjct: 848 LQDMGFKISK-----SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 466 AKAGKM--PLIIVERMQKDNVQMD 487
            K  ++    I+V  M++ N +++
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVE 926


>gi|302811145|ref|XP_002987262.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
 gi|300144897|gb|EFJ11577.1| hypothetical protein SELMODRAFT_426086 [Selaginella moellendorffii]
          Length = 564

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 183/429 (42%), Gaps = 18/429 (4%)

Query: 82  RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD 141
           R  +R K   +  +W+  +  I     +    LDL S+   ++     F  LP + R  D
Sbjct: 42  RHQERNKVVFKALDWVANEKVIPFGYHETLQRLDLCSRCHHVTRTLLLFRRLPKQWRSED 101

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
               LL  Y +     +AE  M+++   G +K   PY+ ML+ Y   G   +  +M+ E+
Sbjct: 102 AYCILLELYYKRDMLEDAEKTMQELRGIG-IKSLQPYHLMLSFYKLRGMEMRFERMVTEI 160

Query: 202 K-KNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           K    + D   Y + LAA  S   D    E    E++   +  D +    +  +Y++  L
Sbjct: 161 KGSGLALDRSFYTILLAARDSFGGDMVAVEDVLAEMEGRGLKLDAVGCLAVAGIYLRSGL 220

Query: 260 PEKAATTLKEMEKR----TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
             K+   L+ +EK       + +      +L+++  +G +D V RIW   +   A     
Sbjct: 221 RHKSERVLQRLEKSLKSGEFKDSNSIRRRMLAMFGKLGDRDAVDRIWHS-IERSASTTVE 279

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
           ++   I +  ++G+ ++AE++Y        + +PR+ N  LA  + +  +  A +   R+
Sbjct: 280 DFIFGIEAFGRVGKMDEAEDMY--MRVGCNSCNPRLHNAFLAVLVEQGDVIRAVALVERM 337

Query: 376 VTKGIKPCYT--TWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVPDHRLITAAYNK 430
             KG++   +  T+ LL   YLK G + +     E  + A G +    P    +      
Sbjct: 338 --KGVRCLLSTVTYHLLIKVYLKAGDVSRATLAFESLRSAFGKLEWPRPSSETLAVMLEF 395

Query: 431 LEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAE 489
               GD+  +E L+      G  +S  +++SL R YAK G        RM    V+   E
Sbjct: 396 FVGIGDVQASERLVKKWMEDGFPLSAAVFHSLFRVYAKGGAGVDNFPGRMLSAGVEPTRE 455

Query: 490 TQKVLKITS 498
           T+++L+  S
Sbjct: 456 TEQLLRQIS 464


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 158/339 (46%), Gaps = 6/339 (1%)

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +K   PD  +  AL++ + +  +  +A  ++++M    F    + YN M+    S G+LD
Sbjct: 151 EKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLD 210

Query: 193 KVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++L Q L  N  P V+TY + + A   +   + A K   E+    + PD  +Y+T+ 
Sbjct: 211 LALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K  + ++A   ++ +E +    + ++Y+ LL    N G  +E  ++  KM S    
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ +I++L + G+ E+A N+    +    T D    + L+AA+    +L++A  F
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
              +++ G  P    +  +     K G+ ++ LE F K +G V    P+       ++ L
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK-LGEV-GCSPNSSSYNTMFSAL 448

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
              GD   A H+++ + + G    EI YNS++    + G
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 140/329 (42%), Gaps = 9/329 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           + H   ++    E+  L+E M   G+    +    ++  + +   + K  ++++ L+K  
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV  YN  +      N  + A +    ++     PD ++Y+ +          + A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L ++    C+   + Y+ L+      G  DE L++  +M+S   K +   Y  +I  + 
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K G  ++A  +    E      D    NILL A +N+ + E  E    ++ ++   P   
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEH 442
           T+ +L     + G++E+ +   K  +   +   PD   +  + AA+ +   +G +D A  
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLK--LMKEKGLTPDAYSYDPLIAAFCR---EGRLDVAIE 389

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            L T+ + G +   + YN++L T  K GK
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGK 418



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 116/249 (46%), Gaps = 1/249 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EA  LM++M   G       YN ++      G +D+  +M++ L+ K + PDV++YN+ L
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILL 305

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
            A  +Q   E  EK   ++   K DP+ ++YS L +   +    E+A   LK M+++   
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +  +Y  L++ +   G  D  +   + M+S     +   Y  V+++L K G+ ++A  I
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           + +   +  + +    N + +A  +      A      +++ GI P   T+  +     +
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query: 397 KGQMEKVLE 405
           +G +++  E
Sbjct: 486 EGMVDEAFE 494



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 11/281 (3%)

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP---LPYNHMLNLY 185
           NL  K   PD  S   LL + +   K  E E LM KM SE    KC    + Y+ ++   
Sbjct: 288 NLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE----KCDPNVVTYSILITTL 343

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
             +G++++   +L+ +K K  +PD  +Y+  +AA   +   + A +    +      PD 
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++Y+T+ +   K    ++A     ++ +  C  N  +Y+++ S   + G K   L +  +
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           MMS     ++  Y  +IS L + G  ++A  +  +  S          NI+L  +   ++
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +E A +    +V  G +P  TT+ +L  G    G   + +E
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + +   +  A N  + + +K   PD  S   L+ ++ +  +   A   +E M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L   + YN +L     NG+ D+  ++  +L +   SP+  +YN   +A  S  DK 
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A    LE+    IDPD I+Y+++ S   +  + ++A   L +M       + V Y+ +L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +      ++ + + + M+    + N+  YT +I  +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 104/239 (43%), Gaps = 1/239 (0%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +L   ++ G+ ++  +++ ++  +   P+VVTY++ +         E A      
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+  + PD  SY  L + + +    + A   L+ M    C  + V Y+++L+     G 
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+ L I+ K+  +    N + Y  + S+L   G+  +A ++  E  S     D    N 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +++       ++ A      + +    P   T+ ++  G+ K  ++E  +   +  +G+
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 3/191 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  F E +      PD  +   +L +  +N K+ +A  +  K+ E G       YN 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           M +   S+G   +   M+ E+  N   PD +TYN  ++    +   + A +  ++++  +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P  ++Y+ +   + K    E A   L+ M    CR N   Y+ L+      GY+ E +
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 300 RIWKKMMSLFA 310
            +   ++ + A
Sbjct: 564 ELANDLVRIDA 574


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 148/335 (44%), Gaps = 7/335 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+    ++ +  +   L+E+M+  G     + YN ++N  +  G+  +   +L+++
Sbjct: 103 TYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQM 162

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL--KKTKIDPDWISYSTLTSLYIKME 258
             N   P+++T+ L +     + + E A +   E+   ++ + PD I+++++     K +
Sbjct: 163 AANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQ 222

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A    K   +R CR N V YS+L+   + M   DE L++  KM+ L  + N   Y+
Sbjct: 223 RILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYS 282

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            V+  L+K+G  E A  +  +        D    N L+  +  R +L  A      ++  
Sbjct: 283 TVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEA 342

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G  P   T+  L  G  + G+ ++ +E       + R   P+    ++  + L + G + 
Sbjct: 343 GFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM--AARGCAPNAITYSSIVDGLCKAGRVT 400

Query: 439 GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            A      +     V+  +  Y++L+    KAGK+
Sbjct: 401 EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKI 435



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 137/329 (41%), Gaps = 11/329 (3%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           ++    +++K  +A  L ++M +       + Y  +++      ++ +   + +E + K 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKA 263
             P VVTYN  +         E A   + ++       P  ++YSTL     +    +K 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              L+EM  R C  N V Y++L++     G   E   + ++M +         +  +I  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIK 381
           L K GE E A  + DE   I     P V   N +L       ++  A + + R + +G +
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           P   T+  L  G  K  +M++ L+   K +  G     V      +   + L + G ++ 
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT----YSTVVDGLLKVGRMED 296

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           A  +L  +R+AG +   + YN+L+  + K
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFK 325



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 128/329 (38%), Gaps = 53/329 (16%)

Query: 65  EGHTVHKYELNR-----------IVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAV 112
           + H V K  L R           ++  L K+ +   AL++   M EL      V+  Y+ 
Sbjct: 226 DAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT--YST 283

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +D + K+  +  A      + D    PD  T + L+  + + ++  EA  L+ +M E G
Sbjct: 284 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 343

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA-CASQNDKET- 227
           F    + Y  + +    +G+ D+  ++L  +  +  +P+ +TY+  +   C +    E  
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEAL 403

Query: 228 -----------------AEKAFLE--LKKTKID---------------PDWISYSTLTSL 253
                            A  A ++   K  KID               PD +++S L + 
Sbjct: 404 GYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILING 463

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
                  +      + M +R C  + V Y++L+         DE   ++++M S     +
Sbjct: 464 LCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWES 342
            +    +I  L+++   E A+ I DE  S
Sbjct: 524 RSTRRTMIHGLLEVNRDEDAKRIQDEENS 552


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 169/362 (46%), Gaps = 10/362 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 196
           PD  T ++LL+ +    + ++A +L+ +M E G+      +N +++ L+  N   + V  
Sbjct: 149 PDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVAL 208

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + + + K   PD+VTY + +     + D + A     ++++ KI+P  + Y+T+      
Sbjct: 209 VDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +    A     EM+ +  R N V Y+SL+    N G   +  R+   M+      N   
Sbjct: 269 YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           ++ +I + VK G+  +AE +YDE    S   D    + L+  +   ++L+ A+  +  ++
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           +K   P   T+  L  G+ K  ++++ +E F++   S R  V +    T   +   +  +
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM--SQRGLVGNTVTYTTLIHGFFQARE 446

Query: 437 IDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQK 492
            D A+ +   + + G V  +I  Y+ LL      GK+   L++ E +Q+  ++ D  T  
Sbjct: 447 CDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505

Query: 493 VL 494
           ++
Sbjct: 506 IM 507



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 147/328 (44%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++ +    K   +A  L  +M   G     + YN ++    + G+     ++L ++ +
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +P+VVT++  + A   +     AEK + E+ K  IDPD  +YS+L + +   +  ++
Sbjct: 320 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 379

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  + C  N V Y++L+  +      DE + ++++M       N   YT +I 
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIH 439

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              +  E + A+ ++ +  S     D    +ILL    N  ++E A   +  L    ++P
Sbjct: 440 GFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ ++  G  K G++E   + F     S++   P+    T   +    +G  + A+ 
Sbjct: 500 DIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           L   ++  G +  +  YN+L+R + + G
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDG 585



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 114/252 (45%), Gaps = 7/252 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A++ FE +  K   P+  T + L+  + + K+  E   L  +MS+ G +   + Y  
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +    + D    + +++      PD++TY++ L    +    ETA   F  L+++K
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           ++PD  +Y+ +     K    E        +  +  + N V Y++++S +   G K+E  
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNIL 355
            ++++M       +   Y  +I + ++ G+   +  +  E  S    GD      V N+L
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616

Query: 356 LAAYINRNQLEM 367
               ++++ L+M
Sbjct: 617 HDGRLDKSFLKM 628



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 5/247 (2%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A   F ++ K++  P  + +S L S   KM   +   +  ++M+      N   YS L
Sbjct: 63  DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++ +         L +  KMM L  + +      +++          A ++  +   +  
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L+      N+   A +  +R+V KG +P   T+ ++  G  K+G ++  L 
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242

Query: 406 CFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
             KK   G +   V  +  I  A   L    +++ A +L   + N G   +   YNSL+R
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDA---LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 464 TYAKAGK 470
                G+
Sbjct: 300 CLCNYGR 306


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 7/329 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD---KVPQMLQE 200
           SAL+ +Y ++    EA  ++E M   G     + YN +++     G +D    +    Q 
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDA-CGKGGVDLRFTLGYFRQM 295

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L+    PD  T+N  L+AC+     E A   F E+    I  D  +Y+T      K    
Sbjct: 296 LRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNI 355

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   L +ME +  + N V YS+L+  Y+ +   DE L++++KM SL  +++   Y  V
Sbjct: 356 ELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTV 415

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++  VK G++ +   + DE E      D    N L+  Y  + +L++       +  +G+
Sbjct: 416 LAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGV 475

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L   Y K G        +     S  K  PD  L ++  + L + G ++ A
Sbjct: 476 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK--PDVVLFSSFIDTLAKNGLVEWA 533

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
             LL  +   G   +   YN+++  + K+
Sbjct: 534 LSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 3/220 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D I K   +  A     ++  K   P+  T S L+  Y + +K  EA  L EKM 
Sbjct: 342 YNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMK 401

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G     + YN +L +Y+  G+  ++  +  E++      D VTYN  +     Q   +
Sbjct: 402 SLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLD 461

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
                  ++++  + P  ++YSTL  +Y K  +   A     + ++   + + V +SS +
Sbjct: 462 IVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFI 521

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
                 G  +  L +   M  +  K N   Y  +I +  K
Sbjct: 522 DTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGK 561



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 10/253 (3%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE-VLRIWKKMM 306
           S L S Y +  L  +A   L+ M+    R   V Y++++      G      L  +++M+
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQML 296

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 +   +  ++S+  + G  E A  ++DE   +    D    N  + A      +E
Sbjct: 297 RDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIE 356

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLI 424
           +A      +  K +KP   T+  L  GY K  + ++ L+ ++K  ++G     V  +  +
Sbjct: 357 LAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVC-YNTV 415

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI--IVERMQK 481
            A Y K  + G+I     +   + ++G    T  YNSL+  Y K G++ ++  +V+ M++
Sbjct: 416 LAIYVKAGKYGEI---AIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRR 472

Query: 482 DNVQMDAETQKVL 494
             V     T   L
Sbjct: 473 RGVAPSVLTYSTL 485



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 57/309 (18%), Positives = 123/309 (39%), Gaps = 48/309 (15%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           Y  N  +  + K    + A++V   ME + ++K     Y+  +D  SK+     A   +E
Sbjct: 340 YTYNTFIDAICKCGNIELAMQVLLDMEAK-NVKPNVVTYSTLIDGYSKLEKYDEALKLYE 398

Query: 132 NLPD-KMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +    ++    C + +L  YV+  K  E   + ++M + G  K  + YN ++N Y   G
Sbjct: 399 KMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQG 458

Query: 190 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----- 243
           +LD V  ++Q++++   +P V+TY+  +   +       A   +L+ K++ + PD     
Sbjct: 459 RLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFS 518

Query: 244 -------------W-----------------ISYSTLTSLYIKMELPEKAATTLKEM--- 270
                        W                 ++Y+T+   + K ++  +      EM   
Sbjct: 519 SFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIV 578

Query: 271 ---EKRTCRKNRVAYSSLLSLYTNMGYKDE---VLRIWKKMMSLFAKMNDAEYTCVISSL 324
                +  R          ++   M    E   +L +++KM+    + N   ++ ++++ 
Sbjct: 579 GVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNAC 638

Query: 325 VKLGEFEKA 333
            +   FE A
Sbjct: 639 SRCNNFEDA 647


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 45/394 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQM 197
           T + ++HSY +  +  E + ++ +M +    +C  P    +N M++     G ++    +
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEK----RCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           +  +  K   P +VTYN  L         + A + F  +    + PD  S++ L   + +
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E+A    KEM  R    + V++S L+ L+T  G  D      ++M       +   
Sbjct: 277 AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVI 336

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT VI    + G   +A  + DE  +     D    N LL       +L  AE   N + 
Sbjct: 337 YTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMK 396

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLE------------------------CFKKAIG 412
            +G+ P   T+  L  GY + G +EK L+                        C +  +G
Sbjct: 397 ERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLG 456

Query: 413 SV---------RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
                      R+  P+H   +   +   E+G +D A   L  + N G V   + YNS++
Sbjct: 457 KANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSII 516

Query: 463 RTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
           + Y ++G +      + +M+ D V  D  T   L
Sbjct: 517 KGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 157/375 (41%), Gaps = 41/375 (10%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           A AL++ M   G     + YN +L   + NG+ DK  ++ + +     +PDV ++N+ + 
Sbjct: 213 AMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIG 272

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 + E A + + E++  ++ PD +S+S L  L+ +    + AA  L+EM +     
Sbjct: 273 GFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMP 332

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V Y+ ++  +   G   E LR+  +M++     +   Y  +++ L K      AE + 
Sbjct: 333 DGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELL 392

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +E +      D      L+  Y     +E A  F++ +  + ++P   T+  L  G  ++
Sbjct: 393 NEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQ 452

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G + K  E +       R+  P+H   +   +   E+G +D A   L  + N G V   +
Sbjct: 453 GDLGKANELWDDM--HSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIM 510

Query: 458 ------------------------------------YNSLLRTYAKAGKM--PLIIVERM 479
                                               YN+L+  Y K GKM     +++ M
Sbjct: 511 TYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIM 570

Query: 480 QKDNVQMDAETQKVL 494
           + +NVQ DA T  ++
Sbjct: 571 ENENVQPDAVTYNMI 585



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 3/289 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  F++ +  +   PD  S   L+  + +  +   A   + +M E G +   + Y  
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  +   G + +  ++  E+      PDVVTYN  L     +     AE+   E+K+  
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD  +++TL   Y +    EKA      +  +  R + V Y++L+      G   +  
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            +W  M S     N   Y+ +I S  + G+ + A    DE  +     +    N ++  Y
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
                +   + F  ++    + P   T+  L  GY+K+G+M +     K
Sbjct: 520 CRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLK 568



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A  FF+ + D+   PD  T + L+    +     +A  L + M         + Y+ 
Sbjct: 420 IEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSI 479

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +   GQ+D     L E+  K   P+++TYN  +       +    ++   +++  K
Sbjct: 480 LIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDK 539

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+Y+TL   Y+K     +A   LK ME    + + V Y+ ++S ++  G   E  
Sbjct: 540 VMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEAD 599

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            ++KKM +   + +   Y  +I+  V  G  +K+  ++DE
Sbjct: 600 WVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDE 639



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 104/264 (39%), Gaps = 3/264 (1%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EA  + ++M   G L   + YN +LN      +L    ++L E+K +   PD+ T+   +
Sbjct: 352 EALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLI 411

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                  + E A + F  +   ++ PD ++Y+TL     +     KA     +M  R   
Sbjct: 412 HGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIF 471

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N V YS L+  +   G  D       +M++     N   Y  +I    + G   K +  
Sbjct: 472 PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             +        D    N L+  Y+   ++  A +    +  + ++P   T+ ++  G+  
Sbjct: 532 LPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSV 591

Query: 397 KGQMEKVLECFKKAIGSVRKWVPD 420
            G M++    +KK     R   PD
Sbjct: 592 HGNMQEADWVYKKM--GARGIEPD 613



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/273 (17%), Positives = 109/273 (39%), Gaps = 5/273 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L  N+  +  T N+ + +          +    E++K  + PD ++++ +     +    
Sbjct: 151 LSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDV 210

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   +  M  +  +   V Y+S+L      G  D+   +++ M +     +   +  +
Sbjct: 211 EAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNML 270

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    + GE E+A   Y E      T D    + L+  +  R +++ A  +   +   G+
Sbjct: 271 IGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGL 330

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    + ++  G+ + G M + L    + +      +PD        N L ++  +  A
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAF--GCLPDVVTYNTLLNGLCKERRLSDA 388

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           E LL  ++  G V  ++  + +L+  Y + G +
Sbjct: 389 EELLNEMKERG-VPPDLCTFTTLIHGYCRDGNI 420



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 90/200 (45%), Gaps = 3/200 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + +   L  A   ++++  +   P+  T S L+ S+ +  +   A A +++M 
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMV 501

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             G +   + YN ++  Y  +G + K  Q L +++ +   PD++TYN  +     +    
Sbjct: 502 NKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMH 561

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A      ++   + PD ++Y+ + S +      ++A    K+M  R    +R  Y S++
Sbjct: 562 EAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMI 621

Query: 287 SLYTNMGYKDEVLRIWKKMM 306
           + +   G   +  ++  +M+
Sbjct: 622 NGHVVAGNSKKSFQLHDEML 641


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 160/355 (45%), Gaps = 5/355 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SAL+ +Y ++    EA  + + M   G +   + YN +++     G +  KV ++   + 
Sbjct: 229 SALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGML 288

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            N   PD +T+N  LA C+     E A + F  +    ID D  +Y+TL     K    +
Sbjct: 289 SNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMD 348

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   + EM  +    N V YS+++  Y  +G  D+ L ++ +M  L   ++   Y  ++
Sbjct: 349 LAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLL 408

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   KLG FE+A ++  E E+     D    N LLA Y  + + +     +  +    + 
Sbjct: 409 SVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVS 468

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L   Y K G  ++ +E F++   +  K   D  L +A  + L + G ++ + 
Sbjct: 469 PNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLK--ADVVLYSALIDALCKNGLVESSV 526

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
            LL  +   G   +   YNS++  + ++     ++ +  +   +Q+++ +  V++
Sbjct: 527 TLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQ 581



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 36/283 (12%)

Query: 125 SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           +A   F  + DK    D  T + LL +  +  +   A  +M +M     L   + Y+ M+
Sbjct: 314 AARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMI 373

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           + Y   G+LD    M  E+K                             FL      +  
Sbjct: 374 DGYAKVGRLDDALNMFNEMK-----------------------------FL-----GVGL 399

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D +SY+TL S+Y K+   E+A    KEME    RK+ V Y++LL+ Y      DEV R++
Sbjct: 400 DRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVF 459

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           ++M       N   Y+ +I    K G +++A  ++ E++      D  + + L+ A    
Sbjct: 460 EEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKN 519

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +E + +  + +  +GI+P   T+  +   + +    + V++
Sbjct: 520 GLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVD 562



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 10/234 (4%)

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
           T LKE   +T      A+S+L+S Y   GY +E ++++  M S     N   Y  VI + 
Sbjct: 215 TALKEGYGKTV----YAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDAC 270

Query: 325 VKLG-EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
            K G EF+K   I+D   S     D    N LLA        E A   ++ +V KGI   
Sbjct: 271 GKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQD 330

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             T+  L     K GQM+   E   +     +  +P+    +   +   + G +D A ++
Sbjct: 331 IFTYNTLLDAVCKGGQMDLAFEIMSEM--PTKNILPNVVTYSTMIDGYAKVGRLDDALNM 388

Query: 444 LVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
              ++  G     + YN+LL  YAK G+    L + + M+   ++ D  T   L
Sbjct: 389 FNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNAL 442


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 161/361 (44%), Gaps = 12/361 (3%)

Query: 120 IRGLSSAEN------FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRG  +A N      FFE +      P+  T + ++ +Y + K+  EA  L+  M   G 
Sbjct: 210 IRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGL 269

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               L YN ++N     G++++   +L E+ +K  +PD VTYN  +       +   A  
Sbjct: 270 EPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALV 329

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              E+ +  + PD ++Y++L +   K     +A     +M  R  R N V Y+SL++ ++
Sbjct: 330 LHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G+ DE  RIW +M+          Y  +++     G  E+A  +    E    + D  
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVV 449

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             + ++A +    +L+ A      +V KG+ P   T+  L  G  ++ ++ +  + F++ 
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           +   +  +PD    T+  N   ++GD++ A +L   +   G +  T  YN L+    K  
Sbjct: 510 LN--KSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567

Query: 470 K 470
           +
Sbjct: 568 R 568



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 177/395 (44%), Gaps = 25/395 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   L+ A  FF+ +  +   P+  T ++L++ + Q     EA  + ++M 
Sbjct: 346 YTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMI 405

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             GF    + YN +LN +  +G++++   +L+ ++ K  SPDVV+Y+  +A      + +
Sbjct: 406 RSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELD 465

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   E+ +  + PD I+YS+L     +     +A    +EM  ++   +   Y+SL+
Sbjct: 466 RAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLI 525

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI-----YDEWE 341
           + Y   G  +E L +  +M+      +   Y  +I+ L K     +A+ +     YDE  
Sbjct: 526 NGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESI 585

Query: 342 SISGTGDPRVPNI----------LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
               T D  + +           L+  +  +  +  A+  +  ++ +  KP    + ++ 
Sbjct: 586 PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVII 645

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV--TLRN 449
            G+ + G + K  + +K+ +     ++P    I A    L  +G +D   +L++   LR+
Sbjct: 646 HGHCRDGNVHKAHKLYKEMVDF--GFIPHTVTIIALVKALYSEG-MDEQLNLVIRDILRS 702

Query: 450 AGHVSTEIYNSLLRTYAKAGKMPLI--IVERMQKD 482
                 E+  +L++   K G +  +  ++  M KD
Sbjct: 703 CKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKD 737



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 4/267 (1%)

Query: 207 PDVVTYNLWLAACA-SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           P V++YN  L +    +     AEK + E+  + +  +  SY+ L   +      E    
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             +EME+  C  N V Y++++  Y  +   DE  ++ + M     + N   Y  VI+ L 
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           ++G  E+   +  E +      D    N L+  Y        A   ++ ++  G+ P   
Sbjct: 285 RVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVV 344

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T+  L     K G + + +E F +    VR   P+    T+  N   ++G +D A  +  
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQM--HVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWD 402

Query: 446 TLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +  +G   T + YN+LL  +  +G+M
Sbjct: 403 EMIRSGFPPTIVTYNALLNGHCVSGRM 429


>gi|255562320|ref|XP_002522167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538605|gb|EEF40208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 342

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 144/329 (43%), Gaps = 23/329 (6%)

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQ 222
           M +  F       N +L LY    +LDK      +L   K+N  P + TY L +      
Sbjct: 1   MKDLEFPVTTFACNQLLLLY---KRLDKKKIADVLLLMEKENIKPSLFTYKLLIDTKGQS 57

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           ND    ++    +K   I+PD    + L   Y    L EKA   LKEME     ++R A 
Sbjct: 58  NDLTGMDQIVETMKADGIEPDINIRAILAKHYASGGLKEKAEAILKEMEGGNLEEHRWAC 117

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE--- 339
             LL LY  +G  DEV R+WK   S        E   VI +  KL + +KAE +++    
Sbjct: 118 RLLLPLYAALGKADEVERVWKVCES---SPQLEECVAVIEAWGKLKKIDKAEEVFNRMLT 174

Query: 340 -WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            W+ +S     R  + LL  Y +   L   +    ++   G +    TW+ L   Y++ G
Sbjct: 175 TWKKLSS----RHYSALLKVYASHKMLANGKDLIKKMADSGCRIGPLTWDSLVKLYVEAG 230

Query: 399 QMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST- 455
           ++EK      KA     ++     + +I   Y K   +GD+  AE +   +R AG+V+  
Sbjct: 231 EVEKADSVLHKAAQQNHMKPMFSSYIVIMDQYAK---RGDVHNAEKMFHRMRQAGYVARL 287

Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNV 484
             + +L++TY  A      I ERM+ DN+
Sbjct: 288 RQFQALVQTYINAKAPAYGIRERMKADNI 316



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-- 201
           SALL  Y  +K  A  + L++KM++ G    PL ++ ++ LY+  G+++K   +L +   
Sbjct: 185 SALLKVYASHKMLANGKDLIKKMADSGCRIGPLTWDSLVKLYVEAGEVEKADSVLHKAAQ 244

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  P   +Y + +   A + D   AEK F  +++         +  L   YI  + P
Sbjct: 245 QNHMKPMFSSYIVIMDQYAKRGDVHNAEKMFHRMRQAGYVARLRQFQALVQTYINAKAP 303


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 164/375 (43%), Gaps = 12/375 (3%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYEL--NRIVRELRKLKRYKHALEVCEWMELQ 100
           R L+  + +  SA   +R+++ +G      +L    +VR  ++LK++    E+ EW+  Q
Sbjct: 74  RGLMLEIESTGSAVPVLRQYRTDGDQGLPRDLVLGTLVR-FKQLKKWNLVSEILEWLRYQ 132

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAE 158
                   D+ + +    K+   + AE     L      P+  S  AL+ SY +  K   
Sbjct: 133 NWWNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNN 192

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ----MLQELKKNTSPDVVTYNL 214
           AEA+  +M   G     + Y  +L  ++   +  +  +    +L E K    PD   Y++
Sbjct: 193 AEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHM 252

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       + + A K F  +    +    ++Y++L S     +   + +    +M++  
Sbjct: 253 MIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYK---EVSKIYDQMQRSG 309

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            + + V+Y+ L+  Y     ++E L ++++M+    +     Y  ++ +    G  E+A+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 369

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            ++          D      +L+AY+N + +E AE F+ R+   G +P   T+  +  GY
Sbjct: 370 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGY 429

Query: 395 LKKGQMEKVLECFKK 409
            K   +EK++E ++K
Sbjct: 430 AKANDVEKMMEVYEK 444



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 114/284 (40%), Gaps = 42/284 (14%)

Query: 126 AENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE L D+ + P          +++ Y +     +A  +   M   G  +  + YN 
Sbjct: 228 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNS 287

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++   +  ++ K+   +Q  +    PDVV+Y                            
Sbjct: 288 LMSFETNYKEVSKIYDQMQ--RSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGV 345

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A A     E A+  F  +++ +I PD  SY+T+ S Y+     E A  
Sbjct: 346 RPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEK 405

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             K ++      N V Y +++  Y      ++++ +++KM     K N    T ++ +  
Sbjct: 406 FFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASG 465

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
           +  +F  A   Y E ES     D +  N+LL+ Y  +++L+ A+
Sbjct: 466 RCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAK 509


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 173/375 (46%), Gaps = 13/375 (3%)

Query: 43  RRLLSLVYAKRSAAITMRK--WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           RRL+  +    SA   +R+   K++G       L  +VR  ++LK++    E+ EW++ Q
Sbjct: 52  RRLMKQIEDTGSAVSVLRRERIKKDG-LPRDLVLGTLVR-FKQLKKWDLVSEILEWLQSQ 109

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAE 158
           +       D+ + +    K+   + AE    ++      P+  S  AL+ +Y +  +   
Sbjct: 110 HWWDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNN 169

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNT--SPDVVTYNL 214
           AEA+  +M   G     L Y  +L  ++   +  +  ++ + L  K+N+   PD   +++
Sbjct: 170 AEAIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHM 229

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       + E A K F  + +  +    ++Y++L S     +   + +    +M++  
Sbjct: 230 MIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFETNYK---EVSKIYDQMQRSG 286

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
            R + V+Y+ L+  Y     ++E L ++++M+    + +   Y  ++ +    G  E+A 
Sbjct: 287 LRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQAR 346

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            ++        T D      +L+AY+N + +E AE+F+ RL   G+KP   T+  L  G+
Sbjct: 347 VVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGH 406

Query: 395 LKKGQMEKVLECFKK 409
            K   +EK++E +++
Sbjct: 407 AKVNNLEKMMEIYEE 421



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 7/278 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSALLHSYVQNKKSA----EAEALME 164
           Y + L    +      AE  FE L +K   P +    + H  +  +K A    +A  +  
Sbjct: 189 YQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFA 248

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224
            M+E G  +  + YN +++   +  ++ K+   +Q  +    PDVV+Y L + A      
Sbjct: 249 LMAERGVPQSTVTYNSLMSFETNYKEVSKIYDQMQ--RSGLRPDVVSYALLIKAYGRARR 306

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
           +E A   F E+    + P   +Y+ L   +    + E+A    K M +  C  +  +Y++
Sbjct: 307 EEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTT 366

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +LS Y N    +     +K++     K N   Y  +I    K+   EK   IY+E +  S
Sbjct: 367 MLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNS 426

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              +  +   ++ AY        A  +Y  +   G+ P
Sbjct: 427 IKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPP 464


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 38/364 (10%)

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV------------SGD 109
           WK+ G       ++ ++  L +L    HAL + E   L+     V            +G 
Sbjct: 169 WKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGH 228

Query: 110 YAVHLDLISKIRGLSSAEN-----------------------FFENLPDKMRGPD--TCS 144
           ++  +DL   +R      N                       FF+ +  +   PD  T +
Sbjct: 229 FSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYN 288

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-K 203
           +LL           A+ L+ +M + G ++    YN  L+     GQ+D   ++L+E+  +
Sbjct: 289 SLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSR 348

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              P VVTY+  +  CA  N  E A   + E+K   I  D +SY+T+  +Y K+   ++A
Sbjct: 349 RVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEA 408

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               KEME    +++ V Y++LLS Y   G  DEV R++++M +     N   Y+ +I  
Sbjct: 409 IGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDV 468

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
             K G F++A ++Y +++      D      ++ +      +E +      ++ KGIKP 
Sbjct: 469 YTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPN 528

Query: 384 YTTW 387
             T+
Sbjct: 529 VVTF 532



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 4/268 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ--LDKVPQMLQE- 200
           SA++ +Y +N   ++A  L   M   G     + YN +++   + G+   D V +   E 
Sbjct: 217 SAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAG-AKGEVDFDVVVKFFDEM 275

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L +   PD +TYN  L+ CAS+   ETA+K   E+ +  I  D  +Y+T      K    
Sbjct: 276 LAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQI 335

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A   L+EM  R      V YS+++         ++ L ++++M      ++   Y  +
Sbjct: 336 DLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTM 395

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    KLG F++A     E ES     D    N LL+ Y      +     +  +    I
Sbjct: 396 VGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNI 455

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFK 408
            P   T+  +   Y K G  ++ ++ +K
Sbjct: 456 YPNTLTYSTMIDVYTKGGMFQEAMDVYK 483



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 3/217 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y  +LD + K   +  A    E +  +   P   T S ++    +     +A  L E+M 
Sbjct: 322 YNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMK 381

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
                   + YN M+ +Y   G+ D+     +E++      DVVTYN  L+        +
Sbjct: 382 LRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYD 441

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
              + F E+K   I P+ ++YST+  +Y K  + ++A    K+ +K     + V Y+S++
Sbjct: 442 EVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSII 501

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
                 G  +  + +   M+    K N   +  +I +
Sbjct: 502 DSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDA 538


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 181/406 (44%), Gaps = 61/406 (15%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD---------TCSALLHSYVQNKKSAEAEALMEKMS 167
           IS+ RG+   ++ F N+ D+++  D         T + ++ +Y +     EA AL E+M 
Sbjct: 208 ISESRGVK--DSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMI 265

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTY-----------NLW 215
             GFL   + Y+ ++N    +G+L +  ++L+E+KK    P+ V Y           + W
Sbjct: 266 INGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAW 325

Query: 216 LA-ACASQ-----------------------NDKETAEKAFLELKKTKIDPDWISYSTLT 251
            A AC SQ                       +  + AE  F  L K  + P+ I+Y+ L 
Sbjct: 326 EAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALI 385

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K+   E+  + L+EME++    N + YSS+++ YT  G  DE + + KKM+     
Sbjct: 386 DGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNII 445

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEM 367
            N   Y  +I    K G+ E A ++Y+E + +SG    +V N+L    +N      +++ 
Sbjct: 446 PNAYVYAILIDGYCKAGKQEIATDLYNEMK-LSGL---KVNNVLFDVLVNNLKRGKRMDE 501

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITA 426
           AE     + ++G+   +  +  L  G+ K G+    L   ++      K +P D      
Sbjct: 502 AEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEM---TEKSIPFDVVTYNV 558

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
             N L E G  + A+ +   +   G    +  YN +++ Y K G++
Sbjct: 559 LINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGEL 603



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 173/432 (40%), Gaps = 68/432 (15%)

Query: 129 FFENLPDKMRGPDTC------SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           + E + D +    TC      + L+  Y +  + + A  L+E+M + G L   + YN ++
Sbjct: 130 YGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLI 189

Query: 183 NLYISNGQLDKVPQMLQELKK----------------------NTSPDVVTYNLWLAACA 220
           N +   G+ DK   +L E+ +                      N   D++TY   ++   
Sbjct: 190 NGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYC 249

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
            Q+  E A   + E+      PD ++YS++ +   K     +A   L+EM+K     N V
Sbjct: 250 KQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHV 309

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           AY++L+      G   E      +++     ++    T ++  L K  + ++AE+++   
Sbjct: 310 AYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRAL 369

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             ++   +      L+  Y     +E  ES    +  K I P   T+  +  GY KKG +
Sbjct: 370 SKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGIL 429

Query: 401 EKVLECFKKAIGSVRKWVPD----------------HRLITAAYNKLEEQG--------- 435
           ++ +   KK +   +  +P+                  + T  YN+++  G         
Sbjct: 430 DEAINVMKKMLD--QNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFD 487

Query: 436 ----------DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK--MPLIIVERMQKD 482
                      +D AE LL  + + G +   + Y SL+  + KAGK    L +VE M + 
Sbjct: 488 VLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEK 547

Query: 483 NVQMDAETQKVL 494
           ++  D  T  VL
Sbjct: 548 SIPFDVVTYNVL 559



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 9/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           ++L+  + +  K + A  ++E+M+E       + YN ++N  + +G+ +        ++ 
Sbjct: 522 TSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYSGMIEM 581

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             +P+  TYN+ + A   Q + + A + + E+K  KI P  I+ +TL     +    EKA
Sbjct: 582 GLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKA 641

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              L EM       N V +  LL+  +  G  + VL++ ++++ +  K+N   Y  +I  
Sbjct: 642 MNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVV 701

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
             +L   +KA ++           D    N L+  Y   + ++ A + Y +++ +G+ P 
Sbjct: 702 FCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPN 761

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGA 440
             T+ LL  G L  G M +  E F K         PD   +  + + Y K+   G+   +
Sbjct: 762 IVTYNLLLGGLLGAGLMAERDELFDKM--KENGLNPDASTYDTLISGYGKI---GNKKES 816

Query: 441 EHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKM 471
             L   +   G V  T  YN L+  +AK GKM
Sbjct: 817 IRLYCEMVAQGFVPKTSTYNVLISDFAKVGKM 848



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 126/287 (43%), Gaps = 22/287 (7%)

Query: 146 LLHSYVQN--KKSAEAEALM---EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           ++H  + N   KS +A A++   E++ + G       YN+++ ++       K   +L+ 
Sbjct: 658 VIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKY 717

Query: 201 LKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + ++    D VTYN  +      +  + A   + ++    + P+ ++Y+ L    +   L
Sbjct: 718 MIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGL 777

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +      +M++     +   Y +L+S Y  +G K E +R++ +M++       + Y  
Sbjct: 778 MAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNV 837

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN--------RNQLEMAESF 371
           +IS   K+G+ ++A  + +E +           +IL+  + N        R   ++  + 
Sbjct: 838 LISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTD 897

Query: 372 YNRLVT----KGIKPCYTTWELLTWGYLKKGQM---EKVL-ECFKKA 410
              L+T    KG  PC +T   ++  + + G+M   EK+L E F  A
Sbjct: 898 AKNLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKEIFSHA 944



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 13/211 (6%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+  Y ++    +A A   +M   G     + YN +L   +  G + +  ++  ++
Sbjct: 729 TYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKM 788

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K+N  +PD  TY+  ++      +K+ + + + E+      P   +Y+ L S + K+   
Sbjct: 789 KENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKM 848

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-----SLFAKMNDA 315
           ++A   L EM+ R    +   Y  L+  + N+    ++ R  KK+      +L  +MND 
Sbjct: 849 DQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDK 908

Query: 316 EYT-------CVISSLVKLGEFEKAENIYDE 339
            +        C+ S+  + G+   AE +  E
Sbjct: 909 GFVPCKSTIACISSTFARPGKMLDAEKLLKE 939



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 33/254 (12%)

Query: 208 DVVTYN--LWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAA 264
           D VTYN  +W   C  Q+        FL +  K     D I+ + L   + ++ L +   
Sbjct: 76  DTVTYNTVIW-GFC--QHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGE 132

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +  +      K+ + +++L+  Y   G     L + ++M       +   Y  +I+  
Sbjct: 133 RIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGF 192

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNI---------------------LLAAYINRN 363
            K GE++KA+++  E     G  D    NI                     +++ Y  ++
Sbjct: 193 CKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQH 252

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDH 421
            LE A + Y  ++  G  P   T+  +  G  K G++ +  E  +  K +G      P+H
Sbjct: 253 GLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGV----DPNH 308

Query: 422 RLITAAYNKLEEQG 435
              T   + L + G
Sbjct: 309 VAYTTLIDSLFKAG 322


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 15/350 (4%)

Query: 129 FFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           FFE+L  K RG   C    +ALL  + +     EA  ++ +M + G     + YN +   
Sbjct: 267 FFEDL--KARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGT 324

Query: 185 YISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           Y   G  ++  + L  +  K   P+  TYN  + A  +    + A   F ++KKT   P+
Sbjct: 325 YARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPN 384

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
             +Y+ +  +  K          L EM +  C  NRV ++++L++    G +D V R+ +
Sbjct: 385 VNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLE 444

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
            M S   +++   Y  +I++  + G    A  +Y+E  S   T      N LL     + 
Sbjct: 445 GMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQG 504

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS---VRKWVPD 420
               A+S  +++ TKG KP   ++ LL   Y K G +  +     +  GS      WV  
Sbjct: 505 DWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVIL 564

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
             L+ A +        +DG E     ++  G+     I+NS+L  YAK G
Sbjct: 565 RTLVIANFKCRR----LDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNG 610



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 36/367 (9%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELK 202
           + +LH+  +  +   A  L  ++   G     + YN +L++Y   G+   ++  +L E++
Sbjct: 178 TTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMR 237

Query: 203 K-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
                PD  T +  +AAC      + A   F +LK     P  ++Y+ L  ++ K     
Sbjct: 238 AAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYT 297

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   L EME+  C+ + V Y+ L   Y   G+ +E  R    M S     N   Y  V+
Sbjct: 298 EALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVM 357

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           ++   +G+ ++A  ++D+ +      +    N++L     +++  +       +   G  
Sbjct: 358 TAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCT 417

Query: 382 PCYTTWELLTWGYLKKGQ---MEKVLECFKK---------------AIG----------- 412
           P   TW  +     K+G    + +VLE  +                A G           
Sbjct: 418 PNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKM 477

Query: 413 ----SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAK 467
               +   + P      A  N L  QGD   A+ ++  +R  G    E  Y+ LL+ YAK
Sbjct: 478 YNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAK 537

Query: 468 AGKMPLI 474
            G +  I
Sbjct: 538 GGNVAGI 544



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML++Y  NG   K  ++   +K++  SPD++TYN  +   A  ++   AEK   +LK
Sbjct: 599 FNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 658

Query: 237 KTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            ++ + PD +SY+T+ + + K  L ++A   L EM         V Y +L+  Y+++   
Sbjct: 659 CSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMF 718

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            E   +   M+    K  +  Y  V+ S  +   FE+A     E
Sbjct: 719 SEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSE 762



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 124/320 (38%), Gaps = 41/320 (12%)

Query: 189 GQLDKVPQMLQE--LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           GQ D V  +L E  L   +  DV  Y   L A +     E A + F EL++  + P  ++
Sbjct: 152 GQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVT 211

Query: 247 YSTLTSLYIKM------------------------------------ELPEKAATTLKEM 270
           Y+ +  +Y +M                                     L ++A    +++
Sbjct: 212 YNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDL 271

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           + R      V Y++LL ++   G   E LR+  +M     + +   Y  +  +  + G F
Sbjct: 272 KARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFF 331

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           E+A    D   S     +    N ++ AY N  +++ A + ++++   G  P   T+ L+
Sbjct: 332 EEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLV 391

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
                KK +   +LE   +   S     P+            ++G  D    +L  +R+ 
Sbjct: 392 LGMLGKKSRFTVMLEMLGEM--SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSC 449

Query: 451 G-HVSTEIYNSLLRTYAKAG 469
           G  +S + YN+L+  Y + G
Sbjct: 450 GVELSRDTYNTLIAAYGRCG 469



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/300 (19%), Positives = 113/300 (37%), Gaps = 38/300 (12%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ +Y +      A  +  +M+  GF  C   YN +LN+    G       ++ +
Sbjct: 456 DTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSK 515

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDK---------------------------------- 225
           ++ K   P+  +Y+L L   A   +                                   
Sbjct: 516 MRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCR 575

Query: 226 --ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             +  E AF E+K    +PD + ++++ S+Y K  +  KA      +++     + + Y+
Sbjct: 576 RLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYN 635

Query: 284 SLLSLYTNMGYKDEVLRIWKKM-MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           SL+ +Y       E  +I  ++  S   K +   Y  VI+   K G  ++A+ +  E  +
Sbjct: 636 SLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVA 695

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                     + L+  Y +      A      +V  G+KP   T+  +   Y +  + E+
Sbjct: 696 DGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEE 755


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 181/420 (43%), Gaps = 21/420 (5%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           RR+++ +    SA   +   K     + K  L   +   ++LK++   +E+ +W+  Q  
Sbjct: 71  RRIMTEIEESGSAVSVLSSEKINNQNIPKDLLVGTLIRFKQLKKWHLVVEILDWLRTQNW 130

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
                 D+ + +    K+   + AE     +      P+  S  AL+ +Y +  +   AE
Sbjct: 131 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAE 190

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS----PDVVTYNLWL 216
           A+  +M + G       Y  +L  ++   +  +  ++   L  + +    PD   +N+ +
Sbjct: 191 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMI 250

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                    E A K F  + +  I    ++Y++L S     +   + +    +M++   R
Sbjct: 251 YMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYK---EVSNIYDQMQRADLR 307

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + V+Y+ L+S Y     ++E L ++++M+    +     Y  ++ +    G  E+A+ +
Sbjct: 308 PDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTV 367

Query: 337 YDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           +      S   D   P++     +L+AY+N + +E AE F+ RL+    +P   T+  L 
Sbjct: 368 FK-----SMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLI 422

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
            GY K   +E V++ +++ +  VR    +  ++T   +   + GD D A H    + + G
Sbjct: 423 KGYAKINDLEMVMKKYEEML--VRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNG 480



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 110/272 (40%), Gaps = 42/272 (15%)

Query: 126 AENFFENLPDKMRGP-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  F+NL +    P        + +++ Y +     +A      M+E G  +  + YN 
Sbjct: 224 AEELFDNLLNDENSPLKPDQKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNS 283

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++      ++  +   +Q  + +  PDVV+Y                            
Sbjct: 284 LMSFETDYKEVSNIYDQMQ--RADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGV 341

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A +     E A+  F  +++ +  PD  SY+T+ S Y+  +  E A  
Sbjct: 342 RPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEK 401

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             K + +     N V Y +L+  Y  +   + V++ +++M+    K N    T ++ +  
Sbjct: 402 FFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYG 461

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           K G+F+ A + + E ES     D +  N+LL+
Sbjct: 462 KSGDFDSAVHWFKEMESNGIPPDQKAKNVLLS 493



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 4/205 (1%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCS 144
           YK    + + M+ + D++     YA+ +    K R    A   FE + D    P     +
Sbjct: 291 YKEVSNIYDQMQ-RADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYN 349

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KK 203
            LL ++  +    +A+ + + M    +      Y  ML+ Y++   ++   +  + L + 
Sbjct: 350 ILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQD 409

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
           +  P+VVTY   +   A  ND E   K + E+    I  +    +T+   Y K    + A
Sbjct: 410 DFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSA 469

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSL 288
               KEME      ++ A + LLSL
Sbjct: 470 VHWFKEMESNGIPPDQKAKNVLLSL 494


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 159/337 (47%), Gaps = 19/337 (5%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--- 143
           ++ ALEV EW+ L++     +   A  L ++ K    + A   F      +R   T    
Sbjct: 156 WQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIF------IRAESTVDNT 209

Query: 144 ----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQM 197
               +A++  Y +  +  + + +++ M E G     + +N ++N  +  G +  +   ++
Sbjct: 210 VQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIEL 269

Query: 198 LQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L E++++   PD++TYN  ++AC+ +++ E A K F +++     PD  +Y+ + S+Y +
Sbjct: 270 LNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGR 329

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                KA    KE+E +    + V Y+SLL  +   G  D+V  I  +M+ +    ++  
Sbjct: 330 CGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMT 389

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    K G+   A  +Y + +    T D     +L+ +    N++  A +  + ++
Sbjct: 390 YNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEML 449

Query: 377 TKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKA 410
             G+KP   T+  L  GY + GQ    E+  +C +++
Sbjct: 450 NIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRS 486



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F+ L  K   PD  T ++LL+++ +     + + +  +M + GF++  + YN +++
Sbjct: 336 AEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIH 395

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   GQ     Q+ +++K    +PD +TY + + +    N    A     E+    + P
Sbjct: 396 MYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKP 455

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              +YS L   Y +     +A  T   M +   R +++AYS +L ++       + + ++
Sbjct: 456 TLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLY 515

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           ++M+      +   Y  ++ +L +  + E  + I  + E + G     + +IL+
Sbjct: 516 REMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIASILV 569



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 134/304 (44%), Gaps = 7/304 (2%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACA 220
           L+ ++   G     + YN +++       L++  ++  +++ +   PD+ TYN  ++   
Sbjct: 269 LLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYG 328

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  AE+ F EL+     PD ++Y++L   + +    +K      EM +    ++ +
Sbjct: 329 RCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEM 388

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDE 339
            Y++++ +Y   G     L++++  M L  +  DA  YT +I SL K  +  +A N+  E
Sbjct: 389 TYNTIIHMYGKQGQHGLALQLYRD-MKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSE 447

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             +I      R  + L+  Y    Q   AE  ++ +   GI+P    + ++   +L+  +
Sbjct: 448 MLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDE 507

Query: 400 MEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
             K +  +++    VR  + PD  +  A    L  +  ++  + ++  +     ++ +  
Sbjct: 508 ATKAMMLYREM---VRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAI 564

Query: 459 NSLL 462
            S+L
Sbjct: 565 ASIL 568



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 129/311 (41%), Gaps = 11/311 (3%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
            +L ++ +    AEA+ + + M   G+      Y  M+ L     ++  V  M+ E+++  
Sbjct: 846  ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAG 905

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+  +N  L      +D     + +  +K+  + PD  +Y+TL  +Y +   PE+  
Sbjct: 906  FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGC 965

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            + + EM +         Y SL++ +       +   ++++++S  +K++ + Y  ++   
Sbjct: 966  SLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIY 1025

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAE +    +           ++L+ +Y +  Q + AE     L   G+    
Sbjct: 1026 RNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLST 1085

Query: 385  TTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
              +  +   YLK       ++K++E  K+ +       PDHR+ T              A
Sbjct: 1086 LPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLE------PDHRIWTCFIRAASLSEHTHDA 1139

Query: 441  EHLLVTLRNAG 451
              LL  L+++G
Sbjct: 1140 ILLLQALQDSG 1150



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 156/371 (42%), Gaps = 17/371 (4%)

Query: 106  VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
            +S D AV ++   K++    AE+   NL  +    D    +AL+ +Y  +    +A A+ 
Sbjct: 735  ISIDVAV-IETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVF 793

Query: 164  EKMSECGFLKCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACA 220
              M   G        N +L   I +G+L++   V Q +Q++    S   +   L L A A
Sbjct: 794  NTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSIL--LILDAFA 851

Query: 221  SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
              ++   A+K +  +K     P    Y  +  L  K +        + EME+   R +  
Sbjct: 852  RVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLS 911

Query: 281  AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
             ++S+L LYT +    + ++I++++     + ++  Y  +I    +    E+  ++  E 
Sbjct: 912  IWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEM 971

Query: 341  ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-- 398
              I           L+AA+  +  +  AE  +  L++KG K   + + ++   Y   G  
Sbjct: 972  RRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNH 1031

Query: 399  -QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTE 456
             + EK+L   K A   V   +    L+  +Y      G    AE +L  L+  G  +ST 
Sbjct: 1032 SKAEKLLSMMKDA--GVEPTIATMHLLMVSYGS---SGQPQEAEKVLTNLKEMGLSLSTL 1086

Query: 457  IYNSLLRTYAK 467
             Y+S++  Y K
Sbjct: 1087 PYSSVIDAYLK 1097


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 170/403 (42%), Gaps = 57/403 (14%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFF 130
            N ++        ++ AL VC+ M        V  D   H  ++S  +     S A ++F
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNG----VGPDLVTHNIVLSAYKSGAQYSKALSYF 63

Query: 131 ENLPDKMRGPDTCS--ALLHSYVQNKKSAEA----EALMEKMSECGFLKCP--LPYNHML 182
           E +      PDT +   ++H  ++ K+  +A     ++ EK SEC     P  + +  ++
Sbjct: 64  ELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECR----PDVVTFTSII 119

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +LY   GQ++    +    L +   P++V+YN  ++A AS    + A   F E+K++   
Sbjct: 120 HLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC 179

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD +SY++L S + + + P +A      M++  C+ N V+Y++L+  Y + GY  + + I
Sbjct: 180 PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDI 239

Query: 302 WKKM------------MSLFA-----------------------KMNDAEYTCVISSLVK 326
            ++M             +L A                        +N       I S + 
Sbjct: 240 LREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMN 299

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           +GE+EKA N+Y   E+ +   D     IL++     ++ E A  F+  ++   I      
Sbjct: 300 IGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEI 359

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
           +  +   Y K+GQ+ K    F    GS     PD    TA  N
Sbjct: 360 YSSMICAYSKQGQLVKAESLFNSLKGS--GCCPDLVTYTAMIN 400



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 53/377 (14%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWM-----ELQYDIKLVSGDYAVHLDLISKIRG-LSSAE 127
           LN ++  L K+K+Y  A+E+   M     E + D+  V+    +HL     +RG +   +
Sbjct: 78  LNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDV--VTFTSIIHL---YSVRGQIEDCK 132

Query: 128 NFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---------- 175
             F  +  +   P+  S  AL+ +Y  +    EA ++ ++M   GF  CP          
Sbjct: 133 AVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGF--CPDVVSYTSLIS 190

Query: 176 ---------------------------LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP 207
                                      + YN +++ Y SNG L +   +L+E++++   P
Sbjct: 191 TFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHP 250

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +VV+    LAAC     K   +      +   I  + I+ ++    Y+ +   EKA    
Sbjct: 251 NVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLY 310

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           + ME +T + + V ++ L+S    M   +E L  +K+M+ L   ++   Y+ +I +  K 
Sbjct: 311 RSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQ 370

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G+  KAE++++  +      D      ++ AY      E   + Y  +    I+      
Sbjct: 371 GQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIAC 430

Query: 388 ELLTWGYLKKGQMEKVL 404
             L   + K  Q   VL
Sbjct: 431 SALMKAFNKGNQASNVL 447



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 105/278 (37%), Gaps = 44/278 (15%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE----------- 226
           N  +  Y++ G+ +K   + + ++ K T PD VT+ + ++ C   +  E           
Sbjct: 291 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLD 350

Query: 227 ------------------------TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
                                    AE  F  LK +   PD ++Y+ + + Y   E+ EK
Sbjct: 351 LRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEK 410

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                +EME    + + +A S+L+  +        VL + + M       NDA +  ++S
Sbjct: 411 VCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLS 470

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +   L ++ KA ++ +  E           N LL       + E+    + R V  G   
Sbjct: 471 ACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSV 530

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              T+ +L    L  G+  K +E        V +W+ D
Sbjct: 531 NINTYSILLKNLLSAGKWRKYIE--------VLQWMND 560


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 134/308 (43%), Gaps = 6/308 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K   SP+VVTYN  L A A     E A+  F ELK  K  PD +SYS L +   +    
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   + EM+ + C+ N   Y++L+      G  DE LR+  +M       +   Y C+
Sbjct: 61  EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+L K G   +A  ++ E        D    N L+       + + A      +   G 
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGC 180

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G  K G+  K  + F++     RK  PD    TA  + L + G +D A
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK--PDSITFTALMDALGKAGRVDDA 238

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKIT 497
             LL  ++  G       YN+L+  + K G +     +++ M+++  + D  T   L IT
Sbjct: 239 LELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL-IT 297

Query: 498 SEMPVSEV 505
             +  S++
Sbjct: 298 GLIKASQL 305



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 185/426 (43%), Gaps = 8/426 (1%)

Query: 51  AKRSAAITM-RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
            + S A T+  + +E G     +  N ++  L K+ R + A+E+ E ME ++        
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME-RHGCPPDVMT 186

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +  + K      A   F+ +  + R PD  T +AL+ +  +  +  +A  L+++M 
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
           E G     + YN ++  +   G L +   +L E+K+N   PDVVTY+  +      +  +
Sbjct: 247 ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLD 306

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   +++K    PD I+Y+TL +   K  L   A      M+ + C  + V YS+L+
Sbjct: 307 EACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLI 366

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +        +    ++++M S+  + +   Y  +I+ L K G+ + A+ ++ E      +
Sbjct: 367 TALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLS 426

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N  L +     + + A   +  +   G+ P   T++ L  G  K  +++     
Sbjct: 427 PDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGL 486

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTY 465
            K+ I   +    D          L   G++D A  LL    + G       YN+L+   
Sbjct: 487 LKELI--EQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDAL 544

Query: 466 AKAGKM 471
           AKAG++
Sbjct: 545 AKAGRV 550



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 181/426 (42%), Gaps = 13/426 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  L +  +++ ALEV   M+ +   K     Y   +D + K      A      + D 
Sbjct: 50  LINSLGRAGKWEAALEVVAEMQAK-GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN 108

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  T + L+ +  +  + +EA  L  +M E G +     YN ++      G+  K 
Sbjct: 109 GCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKA 168

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++L+E++++   PDV+TY+  +       +   A K F E+K+    PD I+++ L   
Sbjct: 169 MELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDA 228

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             K    + A   L EM++R  +   V Y++L++ +  +G   E   +  +M     K +
Sbjct: 229 LGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPD 288

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y+C+I+ L+K  + ++A  +  + E      D    N L+        L  A   ++
Sbjct: 289 VVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFD 348

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKL 431
           R+ +KG  P   T+  L     K  ++E     F+  +++G      PD     +    L
Sbjct: 349 RMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG----IQPDLFTYCSIITVL 404

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDA 488
            + G +D A+ L   +R  G     I YN+ L +  + G+      I E M++  +  D 
Sbjct: 405 GKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDV 464

Query: 489 ETQKVL 494
            T   L
Sbjct: 465 ATYDAL 470



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 8/384 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ ++K      A+  FE L      PD  S   L++S  +  K   A  ++ +M 
Sbjct: 12  YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQ 71

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKE 226
             G       YN +++     GQ D+  ++L E++ N   PDV TYN  ++         
Sbjct: 72  AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLS 131

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+++    PD  +Y++L     K+   +KA   L+EME+  C  + + YSSL+
Sbjct: 132 EAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLI 191

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +     G   +  +++++M     K +   +T ++ +L K G  + A  + DE +     
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVK 251

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                 N L+A +     L  A +  + +   G KP   T+  L  G +K  Q+++  + 
Sbjct: 252 PGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQV 311

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTY 465
            KK         PD        N L + G ++ A  L   +++ G +     Y++L+   
Sbjct: 312 LKKM--EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369

Query: 466 AKAGKM--PLIIVERMQKDNVQMD 487
            KA ++    ++ E M+   +Q D
Sbjct: 370 GKAARVESACVLFEEMESVGIQPD 393



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 3/180 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + +      A   FE++ +    PD  T  ALL    + K+  +A  L++++ 
Sbjct: 432 YNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELI 491

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E G     L ++  L +  S G +D+  ++LQ    K   P   +YN  + A A      
Sbjct: 492 EQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVS 551

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     +LK+    PD +SYS+L S   +    + A   L+EM KR  + +  +YS+L+
Sbjct: 552 EAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 116/274 (42%), Gaps = 10/274 (3%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLI 117
           + K +G        + ++  L K  R + A  + E ME   +Q D+      Y   + ++
Sbjct: 349 RMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFT----YCSIITVL 404

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K   +  A+  F  +  K   PD  T +A L+S  +  +  EA  + E M E G L   
Sbjct: 405 GKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDV 464

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             Y+ +L       ++D    +L+EL ++  + D + ++  L    S  + + A +    
Sbjct: 465 ATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQF 524

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
                + P   SY+ L     K     +A  TL++++++  + + V+YSSL+S     G 
Sbjct: 525 ANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQ 584

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
            D    + ++M     K++   Y+ ++  L   G
Sbjct: 585 IDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 177/410 (43%), Gaps = 9/410 (2%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           +G      E+  +VR + +   ++ AL+  EW  L       S   AV L ++ + R  S
Sbjct: 149 DGARASPDEVAFVVRAVGE-SSWRRALDAFEW--LARSSAPASRAVAVVLGVLGRARQDS 205

Query: 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
            AE  F     +       +A++  Y ++ +  +A  L++ M + G     + +N ++N 
Sbjct: 206 IAEEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINA 265

Query: 185 YISNGQLDK--VPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
              +G L       +L E++++   PDV+TYN  ++AC+  ++ E A   F ++  ++  
Sbjct: 266 RSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECR 325

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD  +Y+ + S++ +    E+A    +E+ ++    + + Y+SLL  +   G  D+V   
Sbjct: 326 PDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHT 385

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            ++++    K N+  Y  +I    K+G  + A  +YDE  ++  T D     +++ +   
Sbjct: 386 CEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGK 445

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
            N++  A      +   G+KP    +  L   Y K G+       F   I S  K  PD 
Sbjct: 446 MNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVK--PDR 503

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGK 470
                  +     GD +    L   + N  +    ++Y  LL   AK  K
Sbjct: 504 LAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDK 553



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F  L +K   PD  T ++LL+++ +     + E   E++ + GF K  + YN M++
Sbjct: 347 AERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIH 406

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    N    A K   ++    + P
Sbjct: 407 MYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I++S L   Y K      A  T   M     + +R+AY  +L ++   G  +++L ++
Sbjct: 467 TLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLY 526

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           +KMM+   + +D  Y  ++ +L K  + E+ E +  + E
Sbjct: 527 RKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 3/263 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+   L  A   FE++      PD  T +A++  + +  K+ EAE L  ++ 
Sbjct: 296 YNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELV 355

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E GF+   + YN +L  +   G +DKV    ++L K     + +TYN  +         +
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   + E++     PD ++Y+ +     KM    +A   L++M     +   +A+S+L+
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALI 475

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G + +    +  M++   K +   Y  ++    + G+ EK   +Y +  + +  
Sbjct: 476 CAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYR 535

Query: 347 GDPRVPNILLAAYINRNQLEMAE 369
            D  +  +LL A    ++ E  E
Sbjct: 536 PDDDMYQVLLVALAKEDKCEEIE 558



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 133/314 (42%), Gaps = 17/314 (5%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
            LL ++ +     E   +   M   G+L     Y  M++L   + +   V  M+ E++   
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG 915

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+   N  L    +  + +   + +  + +  ++PD  +Y+TL  +Y +   PE+  
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            T L EM KR       +Y SLL+       +++  +I+++M S   ++N + Y  ++   
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAEN+    +           +IL+ +Y    Q   AE+  N L +  ++   
Sbjct: 1036 RNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVST 1095

Query: 385  TTWELLTWGYLKKGQME----KVLECFKKAIGSVRKWVPDHRLITA---AYNKLEEQGDI 437
              +  +   YLK G       K+LE  +  +       PDH++ T    A +  E+  D 
Sbjct: 1096 LPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVE------PDHQVWTCFIRAASLCEQTAD- 1148

Query: 438  DGAEHLLVTLRNAG 451
              A  LL +L++ G
Sbjct: 1149 --AILLLKSLQDCG 1160



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 36/292 (12%)

Query: 144  SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +AL+H+Y ++    +A A+ + M + G L      N M+   I +G+LD++  +++EL+ 
Sbjct: 784  NALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQD 843

Query: 204  -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
             N      T  L L A A   D     K +  +K     P+   Y ++ SL         
Sbjct: 844  MNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRD 903

Query: 263  AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-------------- 308
                + EME    + +    ++LL++YT  G  D   ++++ ++                
Sbjct: 904  VELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIV 963

Query: 309  -----------FAKMND----------AEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                       F  +N+            Y  ++++  K    E+A+ I++E  S S   
Sbjct: 964  MYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQL 1023

Query: 348  DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +  + ++++  Y N      AE+    +   GI+P   T  +L   Y   GQ
Sbjct: 1024 NRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 155/371 (41%), Gaps = 23/371 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K+  ++ A    E++ D    P     SAL+ +Y +  + A+AE   + M 
Sbjct: 436 YTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMI 495

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     L Y  ML+++  +G  +K+  + +++   N  PD   Y + L A A ++  E
Sbjct: 496 ASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCE 555

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             E+   +++        ++   ++++ IK     + A  LK+   +  + +  +  S++
Sbjct: 556 EIEEVIQDMELLC----RMNLGIISTMLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIM 611

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y      +E L + + +    +   D    C   S++ L   + + + Y+++      
Sbjct: 612 NAYVMTEKHEEGLSLLECICEHVSFSQDLISEC---SIMLLCRKQTSISAYEQYSQRLML 668

Query: 347 GDP----RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             P     +   L+   I       A   +  +   GI+   + +E +   Y K G  E 
Sbjct: 669 KYPDQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPET 728

Query: 403 VLECFKKAI--GSVRKWVPDHRLITAAYNKLE--EQGDIDGAEHLLVTLRNAGHVSTEIY 458
                  A+  G     +    +I  AY K++  +Q +I     L+  LR A  +   I+
Sbjct: 729 AHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEI-----LVKGLRQASGIDRRIW 783

Query: 459 NSLLRTYAKAG 469
           N+L+  YA++G
Sbjct: 784 NALIHAYAESG 794



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N L++A    + LE A + +  ++    +P   T+  +   + + G+ E+    F++ + 
Sbjct: 297 NTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE 356

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             + ++PD     +      ++G++D  EH    L  AG    EI YN+++  Y K G++
Sbjct: 357 --KGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 472 PLII--VERMQKDNVQMDAETQKVL 494
            L +   + M+      DA T  V+
Sbjct: 415 DLAVGLYDEMRAMGCTPDAVTYTVM 439


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 126/272 (46%), Gaps = 1/272 (0%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  TCS LL+   ++ K A+AE ++E +   G +     YN ++N Y     L     + 
Sbjct: 334 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIF 393

Query: 199 QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +++K ++  PD +TYN  +           AE   +E++K+ +DP   +++TL   Y + 
Sbjct: 394 EQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              EK  T L +M+ +  + N +++ S++  +   G   E + I   M+      N   Y
Sbjct: 454 GQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVY 513

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I + ++ G  E+A  + ++ +S   +      N+LL      +Q++ AE     L  
Sbjct: 514 NSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN 573

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +G++P   ++  +      KG  ++ LE  ++
Sbjct: 574 QGLRPDVVSYNTIISACCNKGDTDRALELLQE 605



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 139/361 (38%), Gaps = 47/361 (13%)

Query: 170 GFLKCPLPY----NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           G ++ PLP     N +L   +S G+   V      L      PD   +N  + AC +  D
Sbjct: 114 GSVRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGD 173

Query: 225 KETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
            + A      + +++    PD  SY+ + +   +      A     EM  R    N++ Y
Sbjct: 174 LDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITY 233

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE--- 339
           ++++  +   G  +   R+  +M+    K N   Y  ++S L + G  ++   + DE   
Sbjct: 234 NTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTS 293

Query: 340 -------------WESISGTGDPR-------------------VPNILLAAYINRNQLEM 367
                        ++ ++ TGD R                     +ILL       ++  
Sbjct: 294 YSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAK 353

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           AE     LV  G+ P    +  L  GY +   ++     F++     R   PDH    A 
Sbjct: 354 AEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQM--KSRHIRPDHITYNAL 411

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNV 484
            N L +   I  AE L++ +  +G   S E +N+L+  Y +AG++     ++  MQ   +
Sbjct: 412 INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 485 Q 485
           +
Sbjct: 472 K 472



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +++ ++ +N K  EA A+++ M     +     YN +++ YI +G  ++   +++++K 
Sbjct: 479 GSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKS 538

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  S  + TYNL L      +  + AE+    L    + PD +SY+T+ S        ++
Sbjct: 539 SGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDR 598

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           A   L+EM K   R     Y  LLS   + G   ++  +++ M+
Sbjct: 599 ALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMV 642



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 38/257 (14%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           ++R L  A + FE +  +   PD  T +AL++   + +   EAE L+ +M + G      
Sbjct: 382 QVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVE 441

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELK---------------------------------- 202
            +N +++ Y   GQL+K   +L +++                                  
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 203 --KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K+  P+   YN  + A       E A     ++K + +     +Y+ L     K    
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQI 561

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   +  +  +  R + V+Y++++S   N G  D  L + ++M     +     Y  +
Sbjct: 562 DEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPL 621

Query: 321 ISSLVKLGEFEKAENIY 337
           +S+L   G     E +Y
Sbjct: 622 LSALGSAGRVHDMECLY 638


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 1/229 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +L+     GQ+D   Q++ E+ +K+  P+VVTY+  +   A     + A   F E+K
Sbjct: 215 YNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 274

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              I  D +SY+TL S+Y K+   E+A    KEME    +K+ V Y++LL  Y   G  +
Sbjct: 275 FASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYE 334

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           EV R++++M +     N   Y+ +I    K G +++A  ++ E++      D  + + L+
Sbjct: 335 EVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALI 394

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            A      +E A SF + +  +GI+P   T+  +   + + G +E   E
Sbjct: 395 DALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE 443



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 16/302 (5%)

Query: 207 PDVVTYNLWLAACASQN-DKETAEKAFLELK------KTKIDPDWISYSTLTSLYIKMEL 259
           P++VTYN  + AC     D   A + F E+          I+ D  +Y+TL     K   
Sbjct: 168 PNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 227

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            + A   + EM ++    N V YS+++  Y   G  DE L ++ +M      ++   Y  
Sbjct: 228 MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNT 287

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++S   KLG FE+A N+  E ES     D    N LL  Y  + + E  +  +  +  + 
Sbjct: 288 LLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAER 347

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I P   T+  L   Y K G  ++ +E F++   +  K   D  L +A  + L + G ++ 
Sbjct: 348 IFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLK--ADVVLYSALIDALCKNGLVES 405

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
           A   L  +   G   +   YNS++  + ++G     IVE   +  V  D E  +++KI  
Sbjct: 406 AVSFLDEMTKEGIRPNVVTYNSIIDAFGRSG-----IVEDATESEVG-DKEDNQIIKIFG 459

Query: 499 EM 500
           ++
Sbjct: 460 QL 461



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 3/187 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D  +K   L  A N F  +     G D  S   LL  Y +  +  EA  + ++M 
Sbjct: 250 YSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEME 309

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G  K  + YN +L  Y   G+ ++V ++ +E+K +   P+++TY+  +   +     +
Sbjct: 310 SSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQ 369

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F E KK  +  D + YS L     K  L E A + L EM K   R N V Y+S++
Sbjct: 370 EAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSII 429

Query: 287 SLYTNMG 293
             +   G
Sbjct: 430 DAFGRSG 436


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 177/410 (43%), Gaps = 9/410 (2%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           +G      E+  +VR + +   ++ AL+  EW  L       S   AV L ++ + R  S
Sbjct: 149 DGARASPDEVAFVVRAVGE-SSWRRALDAFEW--LARSSAPASRAVAVVLGVLGRARQDS 205

Query: 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
            AE  F     +       +A++  Y ++ +  +A  L++ M + G     + +N ++N 
Sbjct: 206 IAEEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINA 265

Query: 185 YISNGQLDK--VPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
              +G L       +L E++++   PDV+TYN  ++AC+  ++ E A   F ++  ++  
Sbjct: 266 RSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECR 325

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD  +Y+ + S++ +    E+A    +E+ ++    + + Y+SLL  +   G  D+V   
Sbjct: 326 PDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHT 385

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            ++++    K N+  Y  +I    K+G  + A  +YDE  ++  T D     +++ +   
Sbjct: 386 CEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGK 445

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
            N++  A      +   G+KP    +  L   Y K G+       F   I S  K  PD 
Sbjct: 446 MNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVK--PDR 503

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGK 470
                  +     GD +    L   + N  +    ++Y  LL   AK  K
Sbjct: 504 LAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDK 553



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F  L +K   PD  T ++LL+++ +     + E   E++ + GF K  + YN M++
Sbjct: 347 AERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIH 406

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    N    A K   ++    + P
Sbjct: 407 MYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I++S L   Y K      A  T   M     + +R+AY  +L ++   G  +++L ++
Sbjct: 467 TLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLY 526

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           +KMM+   + +D  Y  ++ +L K  + E+ E +  + E
Sbjct: 527 RKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 3/263 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+   L  A   FE++      PD  T +A++  + +  K+ EAE L  ++ 
Sbjct: 296 YNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELV 355

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E GF+   + YN +L  +   G +DKV    ++L K     + +TYN  +         +
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   + E++     PD ++Y+ +     KM    +A   L++M     +   +A+S+L+
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALI 475

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G + +    +  M++   K +   Y  ++    + G+ EK   +Y +  + +  
Sbjct: 476 CAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYR 535

Query: 347 GDPRVPNILLAAYINRNQLEMAE 369
            D  +  +LL A    ++ E  E
Sbjct: 536 PDDDMYQVLLVALAKEDKCEEIE 558



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 133/314 (42%), Gaps = 17/314 (5%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
            LL ++ +     E   +   M   G+L     Y  M++L   + +   V  M+ E++   
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG 915

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+   N  L    +  + +   + +  + +  ++PD  +Y+TL  +Y +   PE+  
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            T L EM KR       +Y SLL+       +++  +I+++M S   ++N + Y  ++   
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAEN+    +           +IL+ +Y    Q   AE+  N L +  ++   
Sbjct: 1036 RNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVST 1095

Query: 385  TTWELLTWGYLKKGQME----KVLECFKKAIGSVRKWVPDHRLITA---AYNKLEEQGDI 437
              +  +   YLK G       K+LE  +  +       PDH++ T    A +  E+  D 
Sbjct: 1096 LPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVE------PDHQVWTCFIRAASLCEQTAD- 1148

Query: 438  DGAEHLLVTLRNAG 451
              A  LL +L++ G
Sbjct: 1149 --AILLLKSLQDCG 1160



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 36/292 (12%)

Query: 144  SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +AL+H+Y ++    +A A+ + M + G L      N M+   I +G+LD++  +++EL+ 
Sbjct: 784  NALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQD 843

Query: 204  -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
             N      T  L L A A   D     K +  +K     P+   Y ++ SL         
Sbjct: 844  MNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRD 903

Query: 263  AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-------------- 308
                + EME    + +    ++LL++YT  G  D   ++++ ++                
Sbjct: 904  VELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIV 963

Query: 309  -----------FAKMND----------AEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                       F  +N+            Y  ++++  K    E+A+ I++E  S S   
Sbjct: 964  MYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQL 1023

Query: 348  DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +  + ++++  Y N      AE+    +   GI+P   T  +L   Y   GQ
Sbjct: 1024 NRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 152/368 (41%), Gaps = 17/368 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K+  ++ A    E++ D    P     SAL+ +Y +  + A+AE   + M 
Sbjct: 436 YTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMI 495

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     L Y  ML+++  +G  +K+  + +++   N  PD   Y + L A A ++  E
Sbjct: 496 ASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCE 555

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             E+   +++        ++   ++++ IK     + A  LK+   +  + +  +  S++
Sbjct: 556 EIEEVIQDMELLC----RMNLGIISTMLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIM 611

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y      +E L + + +    +   D    C I  L +      A   Y +   +   
Sbjct: 612 NAYVMTEKHEEGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYP 671

Query: 347 G-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           G +  +   L+   I       A   +  +   GI+   + +E +   Y K G  E    
Sbjct: 672 GQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHR 731

Query: 406 CFKKAI--GSVRKWVPDHRLITAAYNKLE--EQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
               A+  G     +    +I  AY K++  +Q +I     L+  LR A  +   I+N+L
Sbjct: 732 LMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEI-----LVKGLRQASGIDRRIWNAL 786

Query: 462 LRTYAKAG 469
           +  YA++G
Sbjct: 787 IHAYAESG 794



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N L++A    + LE A + +  ++    +P   T+  +   + + G+ E+    F++ + 
Sbjct: 297 NTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE 356

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             + ++PD     +      ++G++D  EH    L  AG    EI YN+++  Y K G++
Sbjct: 357 --KGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRL 414

Query: 472 PLII--VERMQKDNVQMDAETQKVL 494
            L +   + M+      DA T  V+
Sbjct: 415 DLAVGLYDEMRAMGCTPDAVTYTVM 439


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 174/399 (43%), Gaps = 9/399 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E      ++ +L + ++M+ Q   K     Y + + L+ +   L      F+ +P +
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQ 170

Query: 137 --MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
              R   + +AL+++Y +N +   +  L+++M         L YN ++N   + G LD  
Sbjct: 171 GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINA-CARGGLDWE 229

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +  E++ +   PD+VTYN  L+ACA +   + AE  F  +    I PD  +YS L 
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   EK    L EM       +  +Y+ LL  Y   G   E + ++ +M +    
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCT 349

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ +++   + G ++    ++ E +S +   D    NIL+  +      +   + 
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++ +V + I+P   T+E + +   K G  E   +  +    +    VP  +  T      
Sbjct: 410 FHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM--TANDIVPSSKAYTGVIEAF 467

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            +    + A     T+   G + S E ++SLL ++A+ G
Sbjct: 468 GQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG 506



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 133/311 (42%), Gaps = 6/311 (1%)

Query: 120 IRGLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           IRGL   AE  F  + D    PD  T S L+ ++ + ++  +   L+ +M+  G L    
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDIT 318

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +L  Y  +G + +   +  +++    +P+  TY++ L         +   + FLE+
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K +  DPD  +Y+ L  ++ +    ++  T   +M +     +   Y  ++      G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++  +I + M +     +   YT VI +  +   +E+A   ++    +         + L
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSL 498

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L ++     ++ +E+  +RLV  GI     T+      Y + G+ E+ ++ +     S  
Sbjct: 499 LYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS-- 556

Query: 416 KWVPDHRLITA 426
           +  PD R + A
Sbjct: 557 RCDPDERTLEA 567



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y+  ++   K+R L    +    +      PD  S   LL +Y ++    EA  +  +M 
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------- 202
             G       Y+ +LNL+  +G+ D V Q+  E+K                         
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 203 -----------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                      +N  PD+ TY   + AC      E A K    +    I P   +Y+ + 
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + +  L E+A      M +     +   + SLL  +   G   E   I  +++     
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIP 524

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            N   +   I +  + G+FE+A   Y + E      D R    +L+ Y
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVY 572


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 170/403 (42%), Gaps = 57/403 (14%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFF 130
            N ++        ++ AL VC+ M        V  D   H  ++S  +     S A ++F
Sbjct: 103 FNNLINACGSCGNWREALRVCKKMTDNG----VGPDLVTHNIVLSAYKSGAQYSKALSYF 158

Query: 131 ENLPDKMRGPDTCS--ALLHSYVQNKKSAEA----EALMEKMSECGFLKCP--LPYNHML 182
           E +      PDT +   ++H  ++ K+  +A     ++ EK SEC     P  + +  ++
Sbjct: 159 ELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECR----PDVVTFTSII 214

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +LY   GQ++    +    L +   P++V+YN  ++A AS    + A   F E+K++   
Sbjct: 215 HLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC 274

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD +SY++L S + + + P +A      M++  C+ N V+Y++L+  Y + GY  + + I
Sbjct: 275 PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDI 334

Query: 302 WKKM------------MSLFA-----------------------KMNDAEYTCVISSLVK 326
            ++M             +L A                        +N       I S + 
Sbjct: 335 LREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMN 394

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           +GE+EKA N+Y   E+ +   D     IL++     ++ E A  F+  ++   I      
Sbjct: 395 IGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEI 454

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
           +  +   Y K+GQ+ K    F    GS     PD    TA  N
Sbjct: 455 YSSMICAYSKQGQLVKAESLFNSLKGS--GCCPDLVTYTAMIN 495



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 177/399 (44%), Gaps = 8/399 (2%)

Query: 78  VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137
           ++EL ++   +H ++V +WM+ Q +    +  Y + + L ++   +  A   F  +    
Sbjct: 1   MKELTQIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWR 60

Query: 138 RGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
             PD  T +AL++++ +  +   A  +ME M           +N+++N   S G   +  
Sbjct: 61  CKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREAL 120

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           ++ +++  N   PD+VT+N+ L+A  S      A   F  +K T I PD  + + +    
Sbjct: 121 RVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCL 180

Query: 255 IKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           IK++   +A      M EKR+ CR + V ++S++ LY+  G  ++   ++  M++   K 
Sbjct: 181 IKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKP 240

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   Y  +IS+    G  ++A +++DE +      D      L++ +    Q   A   +
Sbjct: 241 NIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVF 300

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKL 431
           + +     KP   ++  L   Y   G + + ++  ++     +   V     + AA  + 
Sbjct: 301 DMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRF 360

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
            ++ +ID    L        H++T   NS + +Y   G+
Sbjct: 361 GQKVNIDSV--LSAAELRGIHLNTIACNSAIGSYMNIGE 397



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 53/377 (14%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWM-----ELQYDIKLVSGDYAVHLDLISKIRG-LSSAE 127
           LN ++  L K+K+Y  A+E+   M     E + D+  V+    +HL     +RG +   +
Sbjct: 173 LNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDV--VTFTSIIHL---YSVRGQIEDCK 227

Query: 128 NFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---------- 175
             F  +  +   P+  S  AL+ +Y  +    EA ++ ++M   GF  CP          
Sbjct: 228 AVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGF--CPDVVSYTSLIS 285

Query: 176 ---------------------------LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP 207
                                      + YN +++ Y SNG L +   +L+E++++   P
Sbjct: 286 TFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHP 345

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +VV+    LAAC     K   +      +   I  + I+ ++    Y+ +   EKA    
Sbjct: 346 NVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLY 405

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           + ME +T + + V ++ L+S    M   +E L  +K+M+ L   ++   Y+ +I +  K 
Sbjct: 406 RSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQ 465

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G+  KAE++++  +      D      ++ AY      E   + Y  +    I+      
Sbjct: 466 GQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIAC 525

Query: 388 ELLTWGYLKKGQMEKVL 404
             L   + K  Q   VL
Sbjct: 526 SALMKAFNKGNQASNVL 542



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 105/278 (37%), Gaps = 44/278 (15%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE----------- 226
           N  +  Y++ G+ +K   + + ++ K T PD VT+ + ++ C   +  E           
Sbjct: 386 NSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLD 445

Query: 227 ------------------------TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
                                    AE  F  LK +   PD ++Y+ + + Y   E+ EK
Sbjct: 446 LRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEK 505

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                +EME    + + +A S+L+  +        VL + + M       NDA +  ++S
Sbjct: 506 VCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLS 565

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +   L ++ KA ++ +  E           N LL       + E+    + R V  G   
Sbjct: 566 ACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSV 625

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              T+ +L    L  G+  K +E        V +W+ D
Sbjct: 626 NINTYSILLKNLLSAGKWRKYIE--------VLQWMND 655


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 160/392 (40%), Gaps = 44/392 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K + L  A   FE +  K   PDT   + L+  + +  K  EA  L++ M 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM- 494

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
                                            L K   P  VTY   +      +    
Sbjct: 495 ---------------------------------LTKGPEPTAVTYGSIVHGFCKLDMINE 521

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A++   ++++   +P    +++L S Y+     E+A   L EM  R C  + + Y+SL+ 
Sbjct: 522 AKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 581

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
           L  + G   E   ++  M+      +   Y  +I +  K+G  E A  I  E  + SG G
Sbjct: 582 LLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVG 640

Query: 348 -DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  Y+   +++ A   Y+R+V  GIKP   T+ +L  G  K G+ ++    
Sbjct: 641 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 700

Query: 407 FKKAIGSVRKWVPDHRL-ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRT 464
           FK+ +   +  VP   +  T   + L + G +  A      + + G +     Y SL+ +
Sbjct: 701 FKEMLE--KDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYS 758

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            AKAG++P    +VE M K  V  D +    L
Sbjct: 759 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSAL 790



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 172/394 (43%), Gaps = 26/394 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD----TCSALLHSYVQNKKSAEAEALMEK 165
           Y   +D  SK   +  A    + +  K  GP+    T  +++H + +     EA+ ++ +
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTK--GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQ 528

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M E G       +  +L+ Y+S G+ ++  Q+L E+  +  +PDV+ Y   +    S   
Sbjct: 529 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 588

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A   F  + +    PD ++Y T+   + K+   E A   L+ M K     +  AY+S
Sbjct: 589 VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNS 648

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+  Y  +   D+   ++ +M++   K N   +  ++  L K G+ ++A +++ E     
Sbjct: 649 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE-- 706

Query: 345 GTGDPRVPNILLAAYINRNQL----EMAESF--YNRLVTKGIKPCYTTWELLTWGYLKKG 398
                 VP  L++  I  + L     ++E+F  +  ++ +GI P   T+  L +   K G
Sbjct: 707 ---KDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAG 763

Query: 399 QMEKVLECFKKAIGSVRKWV--PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           ++ +     KK +  + K    PD +  +A    L +   +D A  +   +   G    E
Sbjct: 764 RIPEA----KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNE 819

Query: 457 I-YNSLLRTYAKAGK-MPLIIVERMQKDNVQMDA 488
           + Y  L R +  AG+ + L  V++     V M+A
Sbjct: 820 VTYKVLRRGFRAAGRALDLEAVKQHFSQGVAMEA 853



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 160/402 (39%), Gaps = 16/402 (3%)

Query: 75  NRIVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           N ++  L K ++   A+E+  E   +  +  +VS  Y   +  ++ I  +  A  FF ++
Sbjct: 24  NIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVS--YNTVISGLASIDKMDEAYKFFNSM 81

Query: 134 PDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            D    PD    + L+H + +  +      L+ +  +  F      Y  +++ Y   G L
Sbjct: 82  IDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-RFRPDVFLYTSVIHGYCKAGDL 140

Query: 192 DKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           D   ++L+E L     PD   Y + +         + A + F  ++K+    D++++ TL
Sbjct: 141 DTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTL 200

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
                     ++A    +EM +R          SL+      G  DE   I++ +++   
Sbjct: 201 IEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKV 260

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             +   Y  ++    KLG  +    +  +        D +  NIL+A +   N+L+ A  
Sbjct: 261 ATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALE 320

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            +  L + G KP   T+  +  G     +ME+    F +A+  +          T     
Sbjct: 321 LFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVIS--------YTTVIKG 372

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           L +   ID A  L   L+ AG     + Y +++    KAG++
Sbjct: 373 LADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRI 414



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 125/304 (41%), Gaps = 45/304 (14%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PDVV  N+ L         + A + FLE+     +P  +SY+T+ S    ++  ++A   
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 267 LKEMEKRTCRKNRVAYSSLLS---------------------------LYTNM------- 292
              M    C  + +A+++L+                            LYT++       
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKA 137

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  D   +I ++M++     + A Y  +I  L KLG  ++A  +++        GD    
Sbjct: 138 GDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTF 197

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
             L+ A  N  +L+ A   Y  ++ +G +P     + L +   K G++++  E ++    
Sbjct: 198 MTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTV-- 255

Query: 413 SVRKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 467
            V K V   R+   AYN L +     G +D    LL+ +    +    + YN L+  +++
Sbjct: 256 -VAKKVATSRV---AYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSR 311

Query: 468 AGKM 471
           A ++
Sbjct: 312 ANRL 315



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/485 (18%), Positives = 182/485 (37%), Gaps = 79/485 (16%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFENL 133
           ++  L KL R   A E+ E M     +    GDY   + LI  +     L  A   +  +
Sbjct: 165 LIDPLCKLGRVDEAYELFERMRKSGCL----GDYVTFMTLIEALSNHGKLDEACELYREM 220

Query: 134 PDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            ++   P  +   +L+ +  +  K  EA  + + +         + YN +++ Y   G++
Sbjct: 221 IERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRV 280

Query: 192 DK-VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           D  +  +LQ ++ +  PD+ TYN+ +A  +  N  + A + F  L      P+  +Y+T+
Sbjct: 281 DDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTI 340

Query: 251 T-SLYIKMELPE----------------------------KAATTLKEMEKRTCRKNRVA 281
              LY    + E                            +A    ++++   C  N VA
Sbjct: 341 IQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVA 400

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y++++      G  ++ L+ ++ M           YT VI  L K      A  ++++  
Sbjct: 401 YTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMV 460

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG-------- 393
                 D      L+  +   ++++ A    + ++TKG +P   T+  +  G        
Sbjct: 461 QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMIN 520

Query: 394 ---------------------------YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                                      YL KG+ E+  +   +   + R   PD  L T+
Sbjct: 521 EAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM--TARGCAPDVILYTS 578

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDN 483
             + L   G +  A H+  ++   G     + Y ++++ ++K G +     I+E M K  
Sbjct: 579 LIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG 638

Query: 484 VQMDA 488
           V  D 
Sbjct: 639 VGPDC 643



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/307 (18%), Positives = 117/307 (38%), Gaps = 41/307 (13%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A     E+  T + PD ++ + + +   K    +KA     EM    C    V+Y+++
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 286 LSLYTNMGYKDEVLRIWKKMMS---------------LFAKMNDAE-------------- 316
           +S   ++   DE  + +  M+                 F K    +              
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR 121

Query: 317 -----YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                YT VI    K G+ +    I +E  +     D     +L+       +++ A   
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           + R+   G    Y T+  L       G++++  E +++ I   R + P   +  +    L
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIE--RGYEPYLEVQDSLIFAL 239

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP---LIIVERMQKDNVQMD 487
            + G +D A  +  T+      ++ + YNSL+  Y K G++     ++++ ++ DN   D
Sbjct: 240 CKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFP-D 298

Query: 488 AETQKVL 494
            +T  +L
Sbjct: 299 IQTYNIL 305


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 161/392 (41%), Gaps = 44/392 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K + L  A   FE +  K   PDT   + L+  + +  K  EA  L++ M 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM- 239

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
                                            L K   P  VTY   +      +    
Sbjct: 240 ---------------------------------LTKGPEPTAVTYGSIVHGFCKLDMINE 266

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A++   ++++   +P    +++L S Y+     E+A   L EM  R C  + + Y+SL+ 
Sbjct: 267 AKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 326

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
           L  + G   E   ++  M+      +   Y  +I +  K+G  E A  I  E  + SG G
Sbjct: 327 LLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVG 385

Query: 348 -DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  Y+   +++ A   Y+R+V  GIKP   T+ +L  G  K G+ ++    
Sbjct: 386 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 445

Query: 407 FKKAIGSVRKWVPDHRL-ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRT 464
           FK+ +   ++ VP   +  T   + L + G +  A      + + G +     Y SL+ +
Sbjct: 446 FKEML--EKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYS 503

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            AKAG++P    +VE M K  V  D +    L
Sbjct: 504 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSAL 535



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 172/394 (43%), Gaps = 26/394 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD----TCSALLHSYVQNKKSAEAEALMEK 165
           Y   +D  SK   +  A    + +  K  GP+    T  +++H + +     EA+ ++ +
Sbjct: 216 YTTLIDGFSKASKMDEARKLLDVMLTK--GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQ 273

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M E G       +  +L+ Y+S G+ ++  Q+L E+  +  +PDV+ Y   +    S   
Sbjct: 274 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 333

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A   F  + +    PD ++Y T+   + K+   E A   L+ M K     +  AY+S
Sbjct: 334 VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNS 393

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+  Y  +   D+   ++ +M++   K N   +  ++  L K G+ ++A +++ E     
Sbjct: 394 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE-- 451

Query: 345 GTGDPRVPNILLAAYINRNQL----EMAESF--YNRLVTKGIKPCYTTWELLTWGYLKKG 398
                 VP  L++  I  + L     ++E+F  +  ++ +GI P   T+  L +   K G
Sbjct: 452 ---KEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAG 508

Query: 399 QMEKVLECFKKAIGSVRKWV--PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           ++ +     KK +  + K    PD +  +A    L +   +D A  +   +   G    E
Sbjct: 509 RIPEA----KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNE 564

Query: 457 I-YNSLLRTYAKAGK-MPLIIVERMQKDNVQMDA 488
           + Y  L R +  AG+ + L  V++     V M+A
Sbjct: 565 VTYKVLRRGFRAAGRALDLEAVKQHFSQGVAMEA 598



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/371 (19%), Positives = 138/371 (37%), Gaps = 43/371 (11%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL 214
           K  EA      M + G     + +  +++ +   GQ     ++L +  K   PDV  Y  
Sbjct: 22  KMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRFRPDVFLYTS 81

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +       D +T    +      K   D ISY+T+       +  ++A    +E++   
Sbjct: 82  VIHGYCKAGDLDTG---YFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAG 138

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           C  N VAY++++      G  ++ L+ +++M           YT VI  L K      A 
Sbjct: 139 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDAC 198

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG- 393
            ++++        D      L+  +   ++++ A    + ++TKG +P   T+  +  G 
Sbjct: 199 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 258

Query: 394 ----------------------------------YLKKGQMEKVLECFKKAIGSVRKWVP 419
                                             YL KG+ E+  +   +   + R   P
Sbjct: 259 CKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM--TARGCAP 316

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IV 476
           D  L T+  + L   G +  A H+  ++   G     + Y ++++ ++K G +     I+
Sbjct: 317 DVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL 376

Query: 477 ERMQKDNVQMD 487
           E M K  V  D
Sbjct: 377 ELMAKSGVGPD 387



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P +V+YN  ++  AS +  + A K F  +     +PD I+++TL   + K   P+     
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L +  KR  R +   Y+S++  Y   G  D     + + ++  A ++   YT VI  L  
Sbjct: 65  LNQALKRF-RPDVFLYTSVIHGYCKAGDLDTG---YFRAVTPKASLDVISYTTVIKGLAD 120

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
               ++A  +++E ++   + +      ++   +   ++E     +  +      P  TT
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           + ++  G  K   +    + F++ +   +  VPD    T   +   +   +D A  LL  
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQ--KGCVPDTITYTTLIDGFSKASKMDEARKLLDV 238

Query: 447 LRNAGHVSTEI-YNSLLRTYAK 467
           +   G   T + Y S++  + K
Sbjct: 239 MLTKGPEPTAVTYGSIVHGFCK 260


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 13/367 (3%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSE 168
           AV + ++ K   +S A +   +L     G D    ++L+ + V N +  EA  + +KM E
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 169 CGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
            G     + YN +LN+Y   G   +K+  + + +K     PD  TYN  +  C   +  E
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F ++K     PD ++Y+ L  +Y K    ++A   L+EME   C  + V Y+SL+
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S Y   G   E + +  +M+     ++   YT ++S  V+ G+ E A  ++ E  +    
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +    N L+  + NR +       +  +      P   TW  L   + + G   +V   
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGV 301

Query: 407 FKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
           FK+   +   +VP+   +  + +AY++    G  D A  +   +  AG       YN++L
Sbjct: 302 FKEMKRA--GFVPERDTYNTLISAYSRC---GSFDQAMDIYKRMLEAGITPDLSTYNAVL 356

Query: 463 RTYAKAG 469
              A+ G
Sbjct: 357 AALARGG 363



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 164/358 (45%), Gaps = 10/358 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           AA  +    ++G  +  Y    ++       RY+ A+ V + ME +   K     Y V L
Sbjct: 17  AASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME-EEGCKPTLITYNVIL 75

Query: 115 DLISKIRGL--SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           ++  K+ G+  +  +  FE + +    PD  T + L+    +     EA A+ + M   G
Sbjct: 76  NVYGKM-GMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMG 134

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
           F+   + YN +L++Y  + +  +  ++L+E++ N  SP +VTYN  ++A A     + A 
Sbjct: 135 FVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAM 194

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +   ++ +  I+ D  +Y+TL S +++    E A     EM    C+ N   +++L+ ++
Sbjct: 195 ELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMH 254

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            N G   E++++++++ +     +   +  +++   + G   +   ++ E +      + 
Sbjct: 255 GNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 314

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVL 404
              N L++AY      + A   Y R++  GI P  +T+  +     + G   Q EK+ 
Sbjct: 315 DTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIF 372



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 117/242 (48%), Gaps = 1/242 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+ +Y ++    EA  L  +M E G       Y  +L+ ++  G+ +   ++  E+
Sbjct: 176 TYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEM 235

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +     P++ T+N  +    ++       K F E+K +   PD ++++TL +++ +  + 
Sbjct: 236 RAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMD 295

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            + +   KEM++      R  Y++L+S Y+  G  D+ + I+K+M+      + + Y  V
Sbjct: 296 SEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAV 355

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +++L + G +E++E I+ E +      +      LL AY N  ++    +    + +  I
Sbjct: 356 LAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVI 415

Query: 381 KP 382
           +P
Sbjct: 416 EP 417



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 144/350 (41%), Gaps = 22/350 (6%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           FE + +    PD  T + LL  + QN   +E   + ++M   GF+     YN +++ Y  
Sbjct: 267 FEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSR 326

Query: 188 NGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G  D+   + +  L+   +PD+ TYN  LAA A     E +EK F E+K  +  P+ ++
Sbjct: 327 CGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELT 386

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y +L   Y   +   +     +E+       + V   +L+ + +     D ++      +
Sbjct: 387 YCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC---DLLVEAEVAFL 443

Query: 307 SLFAKMNDAEYTCVISSLVKLGE---FEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
            L  K    + + + + L   G    F K   I +       T      N L+  +    
Sbjct: 444 ELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSE 503

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--- 420
             E +E     ++ KGIKP   ++  + + Y + G+M++    F +   S    VPD   
Sbjct: 504 NFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRES--GLVPDVIT 561

Query: 421 HRLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
           +    A+Y   +  E+  D+     +   +++    +   YNS++  Y K
Sbjct: 562 YNTFVASYAADSMFEDAIDV-----VRYMIKHGCKPNQNTYNSVVDGYCK 606



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 125/301 (41%), Gaps = 9/301 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+      A + ++ + +    PD  T +A+L +  +     ++E +  +M 
Sbjct: 317 YNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMK 376

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           +       L Y  +L+ Y +  ++ ++  + +E+      P  V     +   +  +   
Sbjct: 377 DGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLV 436

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE AFLELK+    PD  + + + S+Y + ++  K    L  M +     +   Y+SL+
Sbjct: 437 EAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLM 496

Query: 287 SLYT---NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
            +++   N    +EVL   K++++   K +   Y  VI +  + G  ++A  I+ E    
Sbjct: 497 YMHSRSENFERSEEVL---KEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRES 553

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D    N  +A+Y   +  E A      ++  G KP   T+  +  GY K    +  
Sbjct: 554 GLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDA 613

Query: 404 L 404
           +
Sbjct: 614 I 614


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 16/313 (5%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           P     N  +    LD+  Q+ QEL +KNT     +YN+ L A  +    + A + F E+
Sbjct: 224 PSPESCNAVLCRLPLDEAVQLFQELPEKNT----CSYNILLKALCTAGRIKDAHQLFDEM 279

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                 PD ++Y  +   Y  +   E A   L EM  R    N VAY+S+++L  + G  
Sbjct: 280 ASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + +R+ + M+     ++ A +T V+S   + G+   A N +DE +      D      L
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       +L+ AE     +  KG+     T+ +L  GY K G+M +      K +   +
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ--K 454

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI 474
           +  P+    TA  + L +QGD+  A  LL  + + G  ++   YNSL+    KAG +   
Sbjct: 455 RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL--- 511

Query: 475 IVERMQKDNVQMD 487
             E+  +  + MD
Sbjct: 512 --EQAMRTMIDMD 522



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 39/306 (12%)

Query: 135 DKMRGPD---TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D+M  P    T   ++H Y    +   A  L+ +M+  G    P+ Y  ++ L    GQ+
Sbjct: 277 DEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 192 DKVPQMLQEL------------------------------------KKNTSPDVVTYNLW 215
               ++++++                                    K+  + D VTY   
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +       + + AE+   E++   +D D ++Y+ L   Y K+    +A     +M ++  
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRV 456

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             N V Y++L       G       +  +M S   ++N   Y  +I+ L K G  E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
              + +      D      ++ A     +L+ A S    ++ KGIKP   T+ +L  G+ 
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 396 KKGQME 401
             G++E
Sbjct: 577 MSGRVE 582



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 115/278 (41%), Gaps = 3/278 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           + ++  + +    A A    ++M + G     + Y  ++N     G+L +  ++LQE++ 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K    D VTY + +           A     ++ + ++ P+ ++Y+ L+    K      
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  +    N   Y+SL++     G  ++ +R    M     K +   YT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L +  E ++A ++  E             N+L+  +    ++E  +     ++ K I P
Sbjct: 539 ALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP 598

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
             TT+  L   Y  +  M+   E +K  +   ++ VP+
Sbjct: 599 NTTTYNSLMKQYCIEKNMKSTTEIYKGMLS--QEVVPN 634



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 3/237 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L++   +     +A   M  M E G       Y  ++     + +LD+   +LQE 
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P +VTYN+ +         E  ++    + +  I P+  +Y++L   Y  +E  
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC-IEKN 615

Query: 261 EKAATTL-KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            K+ T + K M  +    N   Y+ L+  +       E L    +M+    ++  + Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +I  L K  +F +A  ++++      T +P V N  +    N + LE   +  + LV
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/303 (18%), Positives = 122/303 (40%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + +   L  AE   + + DK    D  T + L+  Y +  K  EA  +  KM 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           +       + Y  + +     G +    ++L E+  K    ++ TYN  +       + E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +  +++ +  + PD  +Y+T+     + +  ++A + L+EM  +  +   V Y+ L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +   G  +   R+ + M+      N   Y  ++         +    IY    S    
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +    NIL+  +     ++ A  F++ ++ KG +   +++  L     KK +  +    
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 407 FKK 409
           F+K
Sbjct: 693 FEK 695


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 7/366 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEA-EALMEKM 166
           Y   L+   K   +  A   F+ + +K   PD  T S ++    +  K  EA E L  KM
Sbjct: 81  YNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKM 140

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDK 225
            E G     + YN ++N    +  +++  ++L+E+  K   PD +TYN  L+        
Sbjct: 141 IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKV 200

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A++ F  +      PD ++Y+ L     K    ++A    K++  +    + V Y+S+
Sbjct: 201 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSI 260

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L         DE   ++KKM++     N A Y+ V+S   +  + + A  + +E   I  
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGA 320

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    NILL      N ++ A   ++ +V  G  P   ++ ++  G  K  ++     
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            F + I   RK VPD        + L + G +D A+ LL  +  +G     + YN+L+  
Sbjct: 381 LFDRMIE--RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNG 438

Query: 465 YAKAGK 470
             K G+
Sbjct: 439 LRKQGR 444



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 13/333 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +L S+ +  K  +   L E+M + G     + YN +++ Y   G++D+  ++ +E+
Sbjct: 10  TFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEM 69

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM-EL 259
                 P + TYN  L A   +   + A + F  + +   +PD ++YST+ S   K  ++
Sbjct: 70  VSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKV 129

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE-VLRIWKKMMSLFAKM---NDA 315
            E       +M +R C  N VAY++L+    N   KDE + R +K +  + +K    ++ 
Sbjct: 130 TEALEMLFHKMIERGCSANTVAYNALI----NGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  ++S L ++G+  +A+  +D   S   + D    N LL A     + + A   +  +
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV 245

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           + KG  P   T+  +  G  +K  M++  E FKK + S     P+    +   +      
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVAS--GCAPNGATYSIVLSGHCRAK 303

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
            +D A  +L  +   G V   + YN LL    K
Sbjct: 304 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 336



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 134/304 (44%), Gaps = 14/304 (4%)

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           Q L    SPD + YN+ +   A +   + A + + E+    ++P   +Y++L + + K  
Sbjct: 33  QMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKET 92

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR-IWKKMMSLFAKMNDAEY 317
             ++A    K M ++    + V YS+++S     G   E L  ++ KM+      N   Y
Sbjct: 93  KMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAY 152

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I+ L K    E+A  + +E  S     D    N +L+      ++  A+ F++ + +
Sbjct: 153 NALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPS 212

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK----LEE 433
           +G  P    +  L     K+G+ ++ ++ FK  I   + ++PD    T  YN     L  
Sbjct: 213 RGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA--KGYMPD----TVTYNSILLGLAR 266

Query: 434 QGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAET 490
           + ++D AE +   +  +G   +   Y+ +L  + +A K+     ++E M K     D  T
Sbjct: 267 KSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVT 326

Query: 491 QKVL 494
             +L
Sbjct: 327 YNIL 330



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 4/271 (1%)

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SP+  T+ + L +   Q       K F ++    I PD I Y+ L   Y K    ++
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    +EM       +   Y+SLL+ +       E + ++K M     + +   Y+ +IS
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 323 SLVKLGEFEKA-ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            L K G+  +A E ++ +      + +    N L+        +E A      + +KG  
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  +  G  + G++ +  + F       R + PD        + L ++G  D A 
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSM--PSRGYSPDVVAYNGLLDALYKEGKTDEAM 239

Query: 442 HLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
            L   +   G++  T  YNS+L   A+   M
Sbjct: 240 KLFKDVIAKGYMPDTVTYNSILLGLARKSNM 270



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +++   +  AE  F+ +      P+  T S +L  + + KK  +A  ++E+MS+ G +  
Sbjct: 264 LARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPD 323

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN +L+       +DK  ++   +  N  +PD+V+Y++ L      N    A   F 
Sbjct: 324 VVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 383

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            + + K+ PD ++++ L     K    ++A   L +M    C  + VAY++L++     G
Sbjct: 384 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQG 443

Query: 294 YKDEVLRIWKKM 305
              +  R+ + M
Sbjct: 444 RHIQADRLTQAM 455



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 6/282 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLI 117
           + +   +G+       N I+  L ++ +   A +  + M  + Y   +V+  Y   LD +
Sbjct: 172 LEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA--YNGLLDAL 229

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K      A   F+++  K   PDT +  ++L    +     EAE + +KM   G     
Sbjct: 230 YKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNG 289

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             Y+ +L+ +    ++D   ++L+E+ K    PDVVTYN+ L      N  + A + F  
Sbjct: 290 ATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 349

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +      PD +SYS + +   K      A      M +R    + V ++ L+      G 
Sbjct: 350 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 409

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            DE   +  +M       +   Y  +++ L K G   +A+ +
Sbjct: 410 LDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRL 451


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 186/447 (41%), Gaps = 14/447 (3%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS-GDYAVHLDLIS 118
           R+  E+G  +  YE N +++ L + KR+K A+ +   +EL  D  +     Y   +  + 
Sbjct: 350 RQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGL---LELVVDTGVPDVFTYGCLIHWLC 406

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K + L  A N ++ + +    P   T  +LL  Y +  +  EA  L  +M + GF    +
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEV 466

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++  YI     D    +L E+++N  S    TYN+ +      N     ++     
Sbjct: 467 TYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRF 526

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                 P  ++Y+++ + ++K  +   A    ++M K+    N V Y+S +  Y      
Sbjct: 527 LSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCC 586

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D  +++   +     + + A Y   I +  K G   +A +          T D  V N  
Sbjct: 587 DLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSF 646

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  Y N   +  A  FY  ++ + +      +  L  G+ K G +   LE + + + +  
Sbjct: 647 VTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMAN-- 704

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM-- 471
             +PD +  TA  + L   GDIDGA+ LL  +R    VS  I  YN L+    + GK+  
Sbjct: 705 HVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRL-DVSPNIVTYNMLINACVRDGKLQE 763

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITS 498
              + + M    V  D  T  +L  T+
Sbjct: 764 AFQLHDEMLSSGVVPDDTTYDILPRTN 790



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 158/420 (37%), Gaps = 29/420 (6%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL----QYDIKLVS---GDYAVH 113
           K +E G    +   + +V  L K+ R   AL + + M L    + D+ L +     Y +H
Sbjct: 245 KMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLH 304

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
            ++         A + F+ +      P   T   L+        S E   L  +M E G 
Sbjct: 305 GEV-------GKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGL 357

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL---WLAACASQNDKETA 228
           L     +N ++   + + +      +L+ +     PDV TY     WL  C  Q   E A
Sbjct: 358 LLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWL--CKHQKLHE-A 414

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              + ++K+  + P  ++Y +L   Y +    ++A     EM  +    N V Y++L+  
Sbjct: 415 VNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKG 474

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           Y      D    +  +M        D  Y  +I+ L  +    + + +   + S      
Sbjct: 475 YIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPT 534

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               N ++  ++    +  A   Y ++  KGI P   T+     GY +    +  +    
Sbjct: 535 TMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAV---- 590

Query: 409 KAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTY 465
           K +  VR+    PD     A  +   +QG++  A H LV L   G      +YNS +  Y
Sbjct: 591 KLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGY 650



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 33/312 (10%)

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +  E++ K    D   Y++ + AC        A + F E+    + PD   Y+   S   
Sbjct: 172 LFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLC 231

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-MSLFAKMND 314
           K+   ++A   L +M +       + YSS++ +   +G  DE LR+  +M ++   KM+ 
Sbjct: 232 KLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDV 291

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
              T ++      GE  KA +++DE  S   T       +L+         +       +
Sbjct: 292 VLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQ 351

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG----SVRKWVPDHRLITAAYNK 430
           ++ +G+      + L+  G L+  +       +K AIG     V   VPD        + 
Sbjct: 352 MIEQGLLLSTYEFNLVIKGLLRDKR-------WKDAIGLLELVVDTGVPDVFTYGCLIHW 404

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAE 489
           L +   +  A +L   ++ AG   S   Y+SLL  Y + G+M                  
Sbjct: 405 LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRM------------------ 446

Query: 490 TQKVLKITSEMP 501
             + LK+ SEMP
Sbjct: 447 -DEALKLYSEMP 457


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 1/264 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T  +LL+ + Q  +  EA +L++ M+E G     + YN ++N    N  L+   ++   +
Sbjct: 687 TLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGM 746

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK    D VTYN  ++   +      A +   ++ K KIDP+ I ++ L   ++K    
Sbjct: 747 EKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 806

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    KEM +R+   N + Y+SL++ +   G   +   ++  M+S     +   Y  +
Sbjct: 807 LEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTL 866

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K    E    ++ E       GD    N L+  Y    +L +A+  +NR+V  G+
Sbjct: 867 ITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 926

Query: 381 KPCYTTWELLTWGYLKKGQMEKVL 404
            P   T+ +L       G++EK L
Sbjct: 927 PPDIVTYNILLDCLCNNGKIEKAL 950



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/434 (20%), Positives = 184/434 (42%), Gaps = 14/434 (3%)

Query: 10  LAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTV 69
           +  A+ F  KAA  ++ G A+ +  +G R+ L    L  +  + +  + +   + +    
Sbjct: 5   IVTAKGFLKKAAYPSSGGGASARAYSGYREKLRTGFLHSIRFEDALDLFLEMVQSQ-PLP 63

Query: 70  HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
              +  R++  +  L+RY+  +   + MEL + I      + + +    +   LS A + 
Sbjct: 64  SVVDFTRLLTAIANLRRYETVIYFSQQMEL-FGISHDLYSFTILIHCFCRCSRLSLALSI 122

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
              +      P   T  +LLH +    +  +A +L+  M + G+    + YN +++    
Sbjct: 123 LGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCK 182

Query: 188 NGQLDKVPQMLQELKKNT--SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
           NG ++   ++L E++K    + D+VTYN  L       +   A +   ++ K +I+PD  
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF 242

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +++ L   ++K    ++A    K+M + +   N V Y+SL++     G      + +  M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
            S     N   Y  +I+   K    E    ++         GD    N L+  Y    +L
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF------KKAIGSVRKWVP 419
            +A+  ++ +V+ G+ P   T  +L  G    G++   +  F      +K +G V   + 
Sbjct: 363 RVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIM 422

Query: 420 DHRLITAAYNKLEE 433
            H L  A  +K+EE
Sbjct: 423 IHGLCKA--DKVEE 434



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 7/298 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K    P +VT    L      N  + A      + +  ++P+ + Y+T+ +   K    
Sbjct: 677 MKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDL 736

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A      MEK+    + V Y++L+S   N G   +  R+ + M+      N   +T +
Sbjct: 737 NNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTAL 796

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I + VK G   +A+N+Y E    S   +    N L+  +  + +L  A+  ++ +V+KG 
Sbjct: 797 IDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGC 856

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+ K  ++E  ++ F +   + +  V D        +   + G ++ A
Sbjct: 857 FPDVVTYNTLITGFCKSKRVEDGMKLFCEM--THQGLVGDAFTYNTLIHGYCQAGKLNVA 914

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           + +   + + G V  +I  YN LL      GK+   L++VE +QK+ + +D  T  ++
Sbjct: 915 QKVFNRMVDCG-VPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNII 971



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 89/186 (47%), Gaps = 3/186 (1%)

Query: 123  LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            L  A++ F+ +  K   PD  T + L+  + ++K+  +   L  +M+  G +     YN 
Sbjct: 841  LGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNT 900

Query: 181  MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
            +++ Y   G+L+   ++   +      PD+VTYN+ L    +    E A     +L+K +
Sbjct: 901  LIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQ 960

Query: 240  IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            +D D I+Y+ +     + +  ++A    + + ++  + + +AY +++S     G + E  
Sbjct: 961  MDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREAD 1020

Query: 300  RIWKKM 305
            ++  +M
Sbjct: 1021 KLCTRM 1026



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/317 (18%), Positives = 135/317 (42%), Gaps = 6/317 (1%)

Query: 86   RYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--T 142
            R++ A+ + + M EL  +  +V   Y   ++ + K R L++A   F  +  K    D  T
Sbjct: 700  RFQEAVSLVDSMAELGLEPNVVI--YNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVT 757

Query: 143  CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
             + L+     + +  +A  L+  M +       + +  +++ ++  G L +   + +E+ 
Sbjct: 758  YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMI 817

Query: 202  KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +++  P+++TYN  +     Q     A+  F  +      PD ++Y+TL + + K +  E
Sbjct: 818  RRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE 877

Query: 262  KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
                   EM  +    +   Y++L+  Y   G  +   +++ +M+      +   Y  ++
Sbjct: 878  DGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILL 937

Query: 322  SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
              L   G+ EKA  + ++ +      D    NI++      ++++ A   +  L  KG+K
Sbjct: 938  DCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVK 997

Query: 382  PCYTTWELLTWGYLKKG 398
                 +  +  G  + G
Sbjct: 998  LDAIAYITMISGLCRNG 1014



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 121/324 (37%), Gaps = 66/324 (20%)

Query: 75   NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFE 131
            N ++  L K +   +ALE+   ME     K +  D   +  LIS +      + A     
Sbjct: 724  NTVINGLCKNRDLNNALEIFYGMEK----KGIVADAVTYNTLISGLCNSGRWTDAARLLR 779

Query: 132  NLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            ++  +   P+    +AL+ ++V+     EA+ L ++M         L YN ++N +   G
Sbjct: 780  DMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQG 839

Query: 190  QLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKE--------------------- 226
            +L     M   +  K   PDVVTYN  +   C S+  ++                     
Sbjct: 840  RLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYN 899

Query: 227  -------------TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
                          A+K F  +    + PD ++Y+ L          EKA   +++++K 
Sbjct: 900  TLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKN 959

Query: 274  TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF---AKMNDAEYTCVISSLVKLG-- 328
                + + Y+ ++     M   D+V   W    SL     K++   Y  +IS L + G  
Sbjct: 960  QMDVDIITYNIIIQ---GMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLR 1016

Query: 329  -------------EFEKAENIYDE 339
                          F  +E IYDE
Sbjct: 1017 READKLCTRMKEDGFMPSERIYDE 1040



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/247 (17%), Positives = 97/247 (39%), Gaps = 3/247 (1%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A   F E+ +++  P  + ++ + +   KM   +       +ME      +  +++ L
Sbjct: 597 DDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTIL 656

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  +         L +  KMM L  + +      +++   +   F++A ++ D    +  
Sbjct: 657 IHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGL 716

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +  + N ++        L  A   +  +  KGI     T+  L  G    G+      
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV-TLRNAGHVSTEIYNSLLRT 464
             +  +   RK  P+    TA  +   ++G++  A++L    +R + H +   YNSL+  
Sbjct: 777 LLRDMVK--RKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLING 834

Query: 465 YAKAGKM 471
           +   G++
Sbjct: 835 FCIQGRL 841


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 16/313 (5%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           P     N  +    LD+  Q+ QEL +KNT     +YN+ L A  +    + A + F E+
Sbjct: 224 PSPESCNAVLCRLPLDEAVQLFQELPEKNT----CSYNILLKALCTAGRIKDAHQLFDEM 279

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                 PD ++Y  +   Y  +   E A   L EM  R    N VAY+S+++L  + G  
Sbjct: 280 ASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + +R+ + M+     ++ A +T V+S   + G+   A N +DE +      D      L
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       +L+ AE     +  KG+     T+ +L  GY K G+M +      K +   +
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ--K 454

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI 474
           +  P+    TA  + L +QGD+  A  LL  + + G  ++   YNSL+    KAG +   
Sbjct: 455 RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL--- 511

Query: 475 IVERMQKDNVQMD 487
             E+  +  + MD
Sbjct: 512 --EQAMRTMIDMD 522



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 118/306 (38%), Gaps = 39/306 (12%)

Query: 135 DKMRGPD---TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D+M  P    T   ++H Y    +   A  L+ +M+  G    P+ Y  ++ L    GQ+
Sbjct: 277 DEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 192 DKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
               ++++++       D   +   ++    + D   A   F E++K  +  D ++Y+ L
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM---- 306
            +   +    ++A   L+EME +    + V Y+ L+  Y  +G   E   +  KM+    
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRV 456

Query: 307 -------------------------------SLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
                                          S   ++N   Y  +I+ L K G  E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
              + +      D      ++ A     +L+ A S    ++ KGIKP   T+ +L  G+ 
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 396 KKGQME 401
             G++E
Sbjct: 577 MSGRVE 582



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 109/266 (40%), Gaps = 1/266 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           + ++  + +    A A    ++M + G     + Y  ++N     G+L +  ++LQE++ 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K    D VTY + +           A     ++ + ++ P+ ++Y+ L+    K      
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  +    N   Y+SL++     G  ++ +R    M     K +   YT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L +  E ++A ++  E             N+L+  +    ++E  +     ++ K I P
Sbjct: 539 ALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP 598

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFK 408
             TT+  L   Y  +  M+   E +K
Sbjct: 599 NTTTYNSLMKQYCIEKNMKSTTEIYK 624



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 3/237 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L++   +     +A   M  M E G       Y  ++     + +LD+   +LQE 
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P +VTYN+ +         E  ++    + +  I P+  +Y++L   Y  +E  
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC-IEKN 615

Query: 261 EKAATTL-KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            K+ T + K M  +    N   Y+ L+  +       E L    +M+    ++  + Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +I  L K  +F +A  ++++      T +P V N  +    N + LE   +  + LV
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/303 (18%), Positives = 122/303 (40%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + +   L  AE   + + DK    D  T + L+  Y +  K  EA  +  KM 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           +       + Y  + +     G +    ++L E+  K    ++ TYN  +       + E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +  +++ +  + PD  +Y+T+     + +  ++A + L+EM  +  +   V Y+ L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +   G  +   R+ + M+      N   Y  ++         +    IY    S    
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +    NIL+  +     ++ A  F++ ++ KG +   +++  L     KK +  +    
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 407 FKK 409
           F+K
Sbjct: 693 FEK 695


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 156/338 (46%), Gaps = 6/338 (1%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAAC 219
            +  +  E GFL      N ++  + + G ++++  + + +K++   P + T+N  L   
Sbjct: 176 CIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGL 235

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
            +    E+AE+ F  ++  KI PD +SY+T+   Y K    +KA     +MEKR    ++
Sbjct: 236 VNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDK 295

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + Y +L+    + G  D  L ++++M     ++    Y+ VI  L K G   +  ++++ 
Sbjct: 296 ITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFEN 355

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   +  +   L+ AY     +  A + + R+  +G +P   T+ ++  G  K G+
Sbjct: 356 MNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGR 415

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIY 458
           +++ +E F+       +   +    ++  + L + G +D AE     +   G    +  Y
Sbjct: 416 LDEAVEYFE--FCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCY 473

Query: 459 NSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           N+L+   AK+GKM   L++ +RM+K+       T  +L
Sbjct: 474 NALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTIL 511



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 4/306 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P   S ++    ++ ++ E  ++ E M++ G       Y  +++ Y  NG +++   + +
Sbjct: 330 PHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFE 389

Query: 200 ELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +K +   PD VTY + +         + A + F   K  ++  + + YS+L     K  
Sbjct: 390 RMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAG 449

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             ++A    +EM +R C ++   Y++L+      G  +E L ++K+M           YT
Sbjct: 450 RVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYT 509

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +IS L K    E+A  ++D       T        L        ++  A    + L   
Sbjct: 510 ILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPM 569

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P  T +E +     K G+ E+  +     +   R+ VP  R+ T   N L + G+ D
Sbjct: 570 GVIP-ETAFEDMINVLCKAGRTEQACKLADGIVDRGRE-VPG-RVRTILINALRKAGNAD 626

Query: 439 GAEHLL 444
            A  L+
Sbjct: 627 LAMKLM 632


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 16/313 (5%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           P     N  +    LD+  Q+ QEL +KNT     +YN+ L A  +    + A + F E+
Sbjct: 224 PSPESCNAVLCRLPLDEAVQLFQELPEKNT----CSYNILLKALCTAGRIKDAHQLFDEM 279

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                 PD ++Y  +   Y  +   E A   L EM  R    N VAY+S+++L  + G  
Sbjct: 280 ASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + +R+ + M+     ++ A +T V+S   + G+   A N +DE +      D      L
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       +L+ AE     +  KG+     T+ +L  GY K G+M +      K +   +
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ--K 454

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI 474
           +  P+    TA  + L +QGD+  A  LL  + + G  ++   YNSL+    KAG +   
Sbjct: 455 RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL--- 511

Query: 475 IVERMQKDNVQMD 487
             E+  +  + MD
Sbjct: 512 --EQAMRTMIDMD 522



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 118/306 (38%), Gaps = 39/306 (12%)

Query: 135 DKMRGPD---TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D+M  P    T   ++H Y    +   A  L+ +M+  G    P+ Y  ++ L    GQ+
Sbjct: 277 DEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQV 336

Query: 192 DKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
               ++++++       D   +   ++    + D   A   F E++K  +  D ++Y+ L
Sbjct: 337 SDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTAL 396

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM---- 306
            +   +    ++A   L+EME +    + V Y+ L+  Y  +G   E   +  KM+    
Sbjct: 397 INGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRV 456

Query: 307 -------------------------------SLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
                                          S   ++N   Y  +I+ L K G  E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
              + +      D      ++ A     +L+ A S    ++ KGIKP   T+ +L  G+ 
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 396 KKGQME 401
             G++E
Sbjct: 577 MSGRVE 582



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 109/266 (40%), Gaps = 1/266 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           + ++  + +    A A    ++M + G     + Y  ++N     G+L +  ++LQE++ 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K    D VTY + +           A     ++ + ++ P+ ++Y+ L+    K      
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  +    N   Y+SL++     G  ++ +R    M     K +   YT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L +  E ++A ++  E             N+L+  +    ++E  +     ++ K I P
Sbjct: 539 ALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP 598

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFK 408
             TT+  L   Y  +  M+   E +K
Sbjct: 599 NTTTYNSLMKQYCIEKNMKSTTEIYK 624



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/303 (18%), Positives = 122/303 (40%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + +   L  AE   + + DK    D  T + L+  Y +  K  EA  +  KM 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           +       + Y  + +     G +    ++L E+  K    ++ TYN  +       + E
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +  +++ +  + PD  +Y+T+     + +  ++A + L+EM  +  +   V Y+ L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +   G  +   R+ + M+      N   Y  ++         +    IY    S    
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +    NIL+  +     ++ A  F++ ++ KG +   +++  L     KK +  +    
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 407 FKK 409
           F+K
Sbjct: 693 FEK 695



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 3/237 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L++   +     +A   M  M E G       Y  ++     + +LD+   +LQE 
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P +VTYN+ +         E  ++    + +  I P+  +Y++L   Y  +E  
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC-IEKN 615

Query: 261 EKAATTL-KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            K+ T + K M  +    N   Y+ L+  +       E L    +M+    ++  + Y  
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +I  L K  +F +A  ++++      T +P V N  +    N + LE   +  + LV
Sbjct: 676 LIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 22/344 (6%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   L++  ++  K +EA  L+E+MSE G     + +N M+  Y   G++D     
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405

Query: 198 LQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + +++++  SPD VTYN  +       +   A +   E+ +  +  D ++ +T+     +
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  E+A   L    KR    + V+Y +L+  Y   G  D  L++W +M       +   
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y C+I  L + G+ E+A +  +E        D    N +L  Y     +E A  F+N++V
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI-TAAYN----KL 431
               KP   T  +L  G   +G +EK L+ F         WV   + I T  YN     L
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGMLEKALKLFN-------TWVSKGKAIDTVTYNTLITSL 638

Query: 432 EEQGDIDGAEHLLVTLR----NAGHVSTEIYNSLLRTYAKAGKM 471
            ++G +D A +LL  +        H +   YN+++     +G++
Sbjct: 639 CKEGRLDDAFNLLSEMEEKELGPDHYT---YNAIITALTDSGRI 679



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 6/336 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + +L +  +  +  +A  L+  M   G L     YN ++  Y   G L +   +
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 198 LQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++ + +N   PDV TYN+ +    ++   E A K   E++  K+ PD +SY+TL +  ++
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                +A   L+EM ++  + N V ++ ++  Y   G  D+      KM       +   
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I+   K G   +A    DE    +   D    N +L       +LE A    +   
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G      ++  L  GY K G +++ L+ + +     ++ +P           L + G 
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM--KEKEIIPSTVTYNCIIGGLCQCGK 538

Query: 437 IDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
            + A   L  L  +G +  E  YN++L  Y + G +
Sbjct: 539 TEQAISKLNELLESGLLPDETTYNTILHGYCREGDV 574



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 1/242 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + +L +  + KK  EA  L+    + G+    + Y  ++  Y  +G +D+  ++  E+
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM 514

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K K   P  VTYN  +         E A     EL ++ + PD  +Y+T+   Y +    
Sbjct: 515 KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDV 574

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA     +M + + + +    + LL      G  ++ L+++   +S    ++   Y  +
Sbjct: 575 EKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTL 634

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+SL K G  + A N+  E E      D    N ++ A  +  ++  AE F ++++ KG 
Sbjct: 635 ITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGX 694

Query: 381 KP 382
            P
Sbjct: 695 LP 696



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 9/336 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSEC---GFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           TC+ LL+S V+   S       E  ++    G +     +N ++  Y    +     + L
Sbjct: 172 TCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFL 231

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
             + K N SPD VTYN  L A   +     A    +++K   + P+  +Y+ L   Y KM
Sbjct: 232 NVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKM 291

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              ++AA  ++ M +     +   Y+ L++   N G  +E  ++  +M +L    +   Y
Sbjct: 292 GWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSY 351

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I+  ++  +  +A  + +E        +    NI++  Y    +++ A +   ++  
Sbjct: 352 NTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEE 411

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGD 436
            G  P   T+  L  GY K G M    E F+      RK +  D   +      L  +  
Sbjct: 412 SGFSPDCVTYNTLINGYCKAGNMG---EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           ++ A  LL + R  G+   E+ Y +L+  Y K G +
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNV 504



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 126/327 (38%), Gaps = 38/327 (11%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +S A    E + +K   P+  T + ++  Y +  K  +A   + KM E GF    + YN 
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++N Y   G + +  + + E+ +KN   D VT N  L     +   E A K     +K  
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
              D +SY TL   Y K    ++A     EM+++    + V Y+ ++      G  ++ +
Sbjct: 484 YFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAI 543

Query: 300 R---------------IWKKMMSLFAKMNDAE------------------YTC--VISSL 324
                            +  ++  + +  D E                  +TC  ++  L
Sbjct: 544 SKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGL 603

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G  EKA  +++ W S     D    N L+ +     +L+ A +  + +  K + P +
Sbjct: 604 CMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDH 663

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAI 411
            T+  +       G++ +  E   K +
Sbjct: 664 YTYNAIITALTDSGRIREAEEFMSKML 690


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 187/426 (43%), Gaps = 19/426 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S ++     S A ++FE
Sbjct: 85  NNVINACGAAGNWKKALELCKKMTENG----VGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYI 186
            +       DT +   ++H  V+  +  EA  L   M E    KCP   + Y  +++ Y 
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE-RRTKCPPDVVTYTSIMHSYC 199

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ++    +   +  +   P++V YN  L A AS+     A   F  +KK  + PD +
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY++L + Y +   PEKA     +M+K +C+ N+V+Y++L+  Y + G   E + +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                + +    + ++++  +  +  + E I +   S     +    N  + +Y++    
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           E A   Y  +    +KP   T+ +L  G  K G+  + L  F+  + S  K      + +
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS--KVSSTKEVYS 437

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKD 482
           +      +QG +  AE    +++ +G     + Y +L++ Y   G  K    + + M+ +
Sbjct: 438 SLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVN 497

Query: 483 NVQMDA 488
            +  DA
Sbjct: 498 GIPPDA 503



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 118/269 (43%), Gaps = 3/269 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S  +LL++Y ++ +  +A  +  KM +       + YN +++ Y S G L +   +
Sbjct: 256 PDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGL 315

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L E++K+   PDVV+ +  LAAC         E      +   ID + ++Y++    Y+ 
Sbjct: 316 LHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLS 375

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               EKA      M +   + + V Y+ L+S  + +G   E LR ++ M+          
Sbjct: 376 FGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEV 435

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y+ +I S +K G+  +AE+ +   +      D      L+ AY      + A   +  + 
Sbjct: 436 YSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEME 495

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             GI P       L   + K G+ E+VL+
Sbjct: 496 VNGIPPDAIICSSLMEAFNKGGEPERVLQ 524



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 137/352 (38%), Gaps = 41/352 (11%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           D    ++  Y ++ +  +A  L  +M E         YN +++ +   GQ      ++++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+    P   TYN  + AC +  + + A +   ++ +  + PD ++++ + S       
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--NDAEY 317
             KA +  + M+      +    + ++     +G   E + ++  M     K   +   Y
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++ S    G+ E  + I+D   +     +    N LL AY +R     A + +N +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            G++P   ++  L   Y +  Q EK  E F                     NK++     
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVF---------------------NKMK----- 285

Query: 438 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMD 487
                     +N+   +   YN+L+  Y  AG  K  + ++  M+KD +Q D
Sbjct: 286 ----------KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 38/241 (15%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  + S LL +  + ++    E ++E     G     + YN  +  Y+S G  +K  ++
Sbjct: 326 PDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALEL 385

Query: 198 LQELKK-NTSPDVVTYNLWLAACAS----------------------------------- 221
              +++ N  PD VTYN+ ++  +                                    
Sbjct: 386 YTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIK 445

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           Q     AE  F  +KK+   PD ++Y+TL   Y      ++A    KEME      + + 
Sbjct: 446 QGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAII 505

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
            SSL+  +   G  + VL++ + M      +N   Y  +I+S   + +++ A  + +  +
Sbjct: 506 CSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLD 565

Query: 342 S 342
           S
Sbjct: 566 S 566



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 23/237 (9%)

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164
           L  GDY   L+L + +R  +         PD +    T + L+    +  K  E+    E
Sbjct: 374 LSFGDYEKALELYTSMRESNVK-------PDAV----TYNILISGSSKLGKYTESLRFFE 422

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQN 223
            M +         Y+ ++  YI  G+L +       +KK+   PDV+TY   + A  +  
Sbjct: 423 DMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGG 482

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             + A   F E++   I PD I  S+L   + K   PE+    ++ M+K++   N+ +Y 
Sbjct: 483 GWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYF 542

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENI 336
            +++  T       ++R WK    +   ++ +  +  + +L      LG+  K EN+
Sbjct: 543 EIIASCT-------MIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENM 592


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 4/330 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+ +Y +     EA  +M  M++ G       YN ++N     G+  +   +L E 
Sbjct: 155 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 214

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L    SPD  TYN  L     +++   A++ F E+ +  + PD +S+S+L +++ +    
Sbjct: 215 LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHL 274

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    ++M+K     + V Y+ L+  Y   G   E L+I  +M+     ++   Y  +
Sbjct: 275 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 334

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++ L K      A+ ++DE        D      L+  +     +  A S +  +  + I
Sbjct: 335 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 394

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP    +  L  G+ K G+MEK  E +   I   RK  P+H       N     G +  A
Sbjct: 395 KPDIVAYNTLIDGFCKVGEMEKASELWDGMIS--RKIFPNHITYGILINAYCSVGHVSEA 452

Query: 441 EHLLVTLRNAGHVSTEIY-NSLLRTYAKAG 469
             L   +   G   T +  N++++ Y ++G
Sbjct: 453 FRLWDVMIEKGIKPTLVTCNTVIKGYCRSG 482



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 141/328 (42%), Gaps = 5/328 (1%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           + S+ R L  A  +F ++      PD    + L+H Y +N    EA  + ++M E G + 
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 326

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
             + YN +LN       L    ++  E+ ++   PD  T+   +       +   A   F
Sbjct: 327 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 386

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             + +  I PD ++Y+TL   + K+   EKA+     M  R    N + Y  L++ Y ++
Sbjct: 387 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSV 446

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G+  E  R+W  M+    K        VI    + G+  KA+       +     D    
Sbjct: 447 GHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISY 506

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N L+  ++  + ++ A  + N++  +G+ P   T+ ++  G+ ++G+M++     +K I 
Sbjct: 507 NTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIE 566

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             +   PD    TA  N    Q +++ A
Sbjct: 567 --KGINPDRSTYTALINGHVTQDNLNEA 592



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K + L+ A+  F+ + ++   PD  T + L+H + Q+    +A +L   M+
Sbjct: 331 YNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMT 390

Query: 168 E--------------CGFLKCP---------------------LPYNHMLNLYISNGQLD 192
           +               GF K                       + Y  ++N Y S G + 
Sbjct: 391 QRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 450

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + +K   P +VT N  +       D   A++    +    + PD ISY+TL 
Sbjct: 451 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 510

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + +++ +  +KA   + +MEK     + + Y+ +++ +   G   E   + +KM+     
Sbjct: 511 NGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGIN 570

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDE 339
            + + YT +I+  V      +A   +DE
Sbjct: 571 PDRSTYTALINGHVTQDNLNEAFRFHDE 598



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 145/346 (41%), Gaps = 30/346 (8%)

Query: 146 LLHSYVQNKKSAEAEALMEKM-----------------SECGFLKCP---LPYNHMLNLY 185
           ++H +V++++ ++A+AL+ +M                 S CG   C    L ++ ++  Y
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCG--NCGTNNLVFDLLIRTY 58

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           +   +L +  +  + L+ K     +   N  L      +  E A +   E+ ++ I+ + 
Sbjct: 59  VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNV 118

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            + + + +   K    +   + L EME      + V Y++L+  Y   G  +E   I   
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M     K +   Y  +I+ L K G + +A+ I  E  +I  + D    N LL     R+ 
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 238

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHR 422
              A+  +  ++ +G+ P   ++  L   + +   +++ L  F+     ++K+  VPD+ 
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFR----DMKKFGLVPDNV 294

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           + T   +     G++  A  +   +   G V   I YN++L    K
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK 340



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 81/167 (48%), Gaps = 3/167 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + ++    +  +S A   ++ + +K   P   TC+ ++  Y ++  S++A+  + +M 
Sbjct: 436 YGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMI 495

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + YN ++N ++    +DK    + +++K    PD++TYN+ +     Q   +
Sbjct: 496 AKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQ 555

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
            AE    ++ +  I+PD  +Y+ L + ++  +   +A     EM +R
Sbjct: 556 EAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  +  A   ++ +  +   P+  T   L+++Y      +EA  L + M 
Sbjct: 401 YNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI 460

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKE 226
           E G     +  N ++  Y  +G   K  + L + + K  +PD ++YN  +     +++  
Sbjct: 461 EKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDN-- 518

Query: 227 TAEKAFL---ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             +KAFL   +++K  + PD I+Y+ + + + +    ++A   L++M ++    +R  Y+
Sbjct: 519 -MDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYT 577

Query: 284 SLLSLYTNMGYKDEVLRIWKKMM 306
           +L++ +      +E  R   +M+
Sbjct: 578 ALINGHVTQDNLNEAFRFHDEML 600


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 149/339 (43%), Gaps = 8/339 (2%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            Y   +D + K   +  A   F+ +P+K   PD  T S ++  Y +++  AEA +L  +M 
Sbjct: 686  YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 745

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
              G       YN +++     G ++K   + +E+ +      +++N  +         + 
Sbjct: 746  SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 805

Query: 228  AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
            A + F E+   +I PD ++Y+T+   + K    E+A    KEM++R    + V Y+SL+ 
Sbjct: 806  ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 865

Query: 288  LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
             Y  +G   EV  +++KM++   K ++  Y  VI +  K     +A  + DE        
Sbjct: 866  GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 925

Query: 348  DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
               + ++L+ A   R  L  A    + +   G+KP       L   + + G+M++    F
Sbjct: 926  KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVF 985

Query: 408  K--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            +  K++G     VPD   +    N      D + A +L+
Sbjct: 986  EGVKSLG----LVPDTTTLIDLVNGNLNDTDSEDARNLI 1020



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 146/329 (44%), Gaps = 4/329 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+  Y +      A  L+++M +   +   + Y  M+N       L    ++L+++
Sbjct: 405 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 464

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 P+VV Y++ + A AS+   E A +    +  + + PD   Y+ + S   K    
Sbjct: 465 TFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 524

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A+T L E++ R  + + V + + +  Y+  G   E  + + +M+      N+  YT +
Sbjct: 525 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL 584

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K G   +A +I+    ++    D +  +  +   +   +++ A   ++ L  KG+
Sbjct: 585 INGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 644

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+ K+G++EK  E   +    ++   P+  +  A  + L + GDI  A
Sbjct: 645 VPDVFTYSSLISGFCKQGEVEKAFELHDEM--CLKGIAPNIFIYNALVDGLCKSGDIQRA 702

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
             L   +   G    +  Y++++  Y K+
Sbjct: 703 RKLFDGMPEKGLEPDSVTYSTMIDGYCKS 731



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 168/407 (41%), Gaps = 26/407 (6%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + + ++ A+  FE +      PD   CSAL+  +++     E   + + M  CG    
Sbjct: 308 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN 367

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN +++     G+++K  ++L+ +      P+  T+ L +     +++   A +   
Sbjct: 368 LITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLD 427

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++K  + P  +SY  + +     +    A   L++M     + N V YS L+  Y + G
Sbjct: 428 EMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEG 487

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             +E  R+   M       +   Y  +IS L K G+ E+A     E +      D     
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AI 411
             +  Y    ++  A  +++ ++  G+ P    + +L  G+ K G + + L  F++  A+
Sbjct: 548 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHAL 607

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           G     +PD +  +A  + L + G +  A  +   L+  G V     Y+SL+  + K G+
Sbjct: 608 G----VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 663

Query: 471 M----------------PLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           +                P I +     D +    + Q+  K+   MP
Sbjct: 664 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 710



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 12/300 (4%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y +++      G L    ++L E+ +K  +P+   Y+L +       D + A +    + 
Sbjct: 231 YTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMG 290

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  + P+  +Y+ +T+   + +   +A  T +EM+K   + +  A S+L+  +   G  D
Sbjct: 291 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 350

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           EVLRI   M+S    +N   Y  +I  L K G+ EKA  I     ++    + R   +L+
Sbjct: 351 EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLI 410

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGS 413
             Y   + +  A    + +  + + P   ++  +  G      +    K+LE  K     
Sbjct: 411 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE--KMTFSG 468

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           ++  V  + ++  AY     +G I+ A  LL  +  +G V+ +I  YN+++   +KAGKM
Sbjct: 469 LKPNVVVYSILIMAY---ASEGRIEEARRLLDGMSCSG-VAPDIFCYNAIISCLSKAGKM 524



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/444 (19%), Positives = 179/444 (40%), Gaps = 49/444 (11%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           ALE+ + ME + ++   +  Y   ++ +   + LS A    E +      P+    S L+
Sbjct: 422 ALELLDEME-KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTS 206
            +Y    +  EA  L++ MS  G       YN +++     G++++    L E++ +   
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 540

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----ME---- 258
           PD VT+  ++   +       A K F E+    + P+   Y+ L + + K    ME    
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 600

Query: 259 ---------LP------------------EKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
                    LP                  ++A     E++++    +   YSSL+S +  
Sbjct: 601 FRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 660

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  ++   +  +M       N   Y  ++  L K G+ ++A  ++D         D   
Sbjct: 661 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            + ++  Y     +  A S ++ + +KG++P    +  L  G  K+G MEK +  F++ +
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780

Query: 412 GSVRKWVPDHRLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
                       +   Y    K++E   +   + ++       HV+   Y +++  + KA
Sbjct: 781 QKGFATTLSFNTLIDGYCKSCKIQEASQL--FQEMIAKQIMPDHVT---YTTVIDWHCKA 835

Query: 469 GKM--PLIIVERMQKDNVQMDAET 490
           GKM    ++ + MQ+ N+ +D  T
Sbjct: 836 GKMEEANLLFKEMQERNLIVDTVT 859



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 3/239 (1%)

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAF 232
           P+ ++ +++ Y   G LD+   +   + KN S    ++  N  L         E   K +
Sbjct: 158 PVVFDILIDSYKRMGMLDEAANVFF-VAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +   K+  D  +Y+ L     K      A   L EM+++    N   YS ++     +
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  DE + + + M       N   YT + + L +     +A+  ++E +      D    
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           + L+  ++    ++      + +V+ GI     T+ +L  G  K G+MEK  E  K  +
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMV 395



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/228 (18%), Positives = 95/228 (41%), Gaps = 3/228 (1%)

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           + +  L   Y +M + ++AA      +  +   + +  +SLL      G  +   +++  
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      +   YT ++ +L K G+   A+ +  E +      +  + ++++        
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           ++ A      +  KG+ P   T+ ++T G  +  +M +    F++   +  K  PD+   
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK--PDYNAC 336

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +A  +    +GDID    +   + + G  ++   YN L+    K GKM
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKM 384


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 149/339 (43%), Gaps = 8/339 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K   +  A   F+ +P+K   PD  T S ++  Y +++  AEA +L  +M 
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G       YN +++     G ++K   + +E+ +      +++N  +         + 
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A + F E+   +I PD ++Y+T+   + K    E+A    KEM++R    + V Y+SL+ 
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y  +G   EV  +++KM++   K ++  Y  VI +  K     +A  + DE        
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
              + ++L+ A   R  L  A    + +   G+KP       L   + + G+M++    F
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 896

Query: 408 K--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           +  K++G     VPD   +    N      D + A +L+
Sbjct: 897 EGVKSLG----LVPDTTTLIDLVNGNLNDTDSEDARNLI 931



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 144/329 (43%), Gaps = 4/329 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+  Y +      A  L+++M +   +   + Y  M+N       L    ++L+++
Sbjct: 316 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 375

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 P+VV Y+  +   AS+   E A +    +  + + PD   Y+ + S   K    
Sbjct: 376 TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 435

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A+T L E++ R  + + V + + +  Y+  G   E  + + +M+      N+  YT +
Sbjct: 436 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL 495

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K G   +A +I+    ++    D +  +  +   +   +++ A   ++ L  KG+
Sbjct: 496 INGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 555

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+ K+G++EK  E   +    ++   P+  +  A  + L + GDI  A
Sbjct: 556 VPDVFTYSSLISGFCKQGEVEKAFELHDEM--CLKGIAPNIFIYNALVDGLCKSGDIQRA 613

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
             L   +   G    +  Y++++  Y K+
Sbjct: 614 RKLFDGMPEKGLEPDSVTYSTMIDGYCKS 642



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 168/407 (41%), Gaps = 26/407 (6%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + + ++ A+  FE +      PD   CSAL+  +++     E   + + M  CG    
Sbjct: 219 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN 278

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN +++     G+++K  ++L+ +      P+  T+ L +     +++   A +   
Sbjct: 279 LITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLD 338

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++K  + P  +SY  + +     +    A   L++M     + N V YS+L+  Y + G
Sbjct: 339 EMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 398

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             +E  R+   M       +   Y  +IS L K G+ E+A     E +      D     
Sbjct: 399 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 458

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAI 411
             +  Y    ++  A  +++ ++  G+ P    + +L  G+ K G + + L  F+   A+
Sbjct: 459 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHAL 518

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           G     +PD +  +A  + L + G +  A  +   L+  G V     Y+SL+  + K G+
Sbjct: 519 G----VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 574

Query: 471 M----------------PLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           +                P I +     D +    + Q+  K+   MP
Sbjct: 575 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 621



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/444 (19%), Positives = 178/444 (40%), Gaps = 49/444 (11%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           ALE+ + ME + ++   +  Y   ++ +   + LS A    E +      P+    S L+
Sbjct: 333 ALELLDEME-KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 391

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTS 206
             Y    +  EA  L++ MS  G       YN +++     G++++    L E++ +   
Sbjct: 392 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 451

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----ME---- 258
           PD VT+  ++   +       A K F E+    + P+   Y+ L + + K    ME    
Sbjct: 452 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 511

Query: 259 ---------LP------------------EKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
                    LP                  ++A     E++++    +   YSSL+S +  
Sbjct: 512 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 571

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  ++   +  +M       N   Y  ++  L K G+ ++A  ++D         D   
Sbjct: 572 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            + ++  Y     +  A S ++ + +KG++P    +  L  G  K+G MEK +  F++ +
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691

Query: 412 GSVRKWVPDHRLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
                       +   Y    K++E   +   + ++       HV+   Y +++  + KA
Sbjct: 692 QKGFATTLSFNTLIDGYCKSCKIQEASQL--FQEMIAKQIMPDHVT---YTTVIDWHCKA 746

Query: 469 GKM--PLIIVERMQKDNVQMDAET 490
           GKM    ++ + MQ+ N+ +D  T
Sbjct: 747 GKMEEANLLFKEMQERNLIVDTVT 770



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 11/235 (4%)

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P+  +Y+ +T+   + +   +A  T +EM+K   + +  A S+L+  +   G  DEVLRI
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M+S    +N   Y  +I  L K G+ EKA  I     ++    + R   +L+  Y  
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 326

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWV 418
            + +  A    + +  + + P   ++  +  G      +    K+LE  K     ++  V
Sbjct: 327 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE--KMTFSGLKPNV 384

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
             +  +   Y     +G I+ A  LL  +  +G V+ +I  YN+++   +KAGKM
Sbjct: 385 VVYSTLIMGY---ASEGRIEEARRLLDGMSCSG-VAPDIFCYNAIISCLSKAGKM 435



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 105/271 (38%), Gaps = 3/271 (1%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K   P+  TY +  A          A+  F E++KT + PD+ + S L   +++    +
Sbjct: 202 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 261

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +       M       N + Y+ L+      G  ++   I K M++L  K N   +  +I
Sbjct: 262 EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 321

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               +     +A  + DE E  +          ++    +   L +A     ++   G+K
Sbjct: 322 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 381

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P    +  L  GY  +G++E+          S     PD     A  + L + G ++ A 
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGM--SCSGVAPDIFCYNAIISCLSKAGKMEEAS 439

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L+ ++  G     + + + +  Y+K GKM
Sbjct: 440 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 470


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 170/402 (42%), Gaps = 25/402 (6%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEK 165
           G Y   +D + K R +  AE     + DK   PD  T +A++H Y  +    E+  +  K
Sbjct: 268 GTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRK 327

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M+  G +   + ++  ++    +G+     ++ Q +  K   PD+V+Y++ L   A++  
Sbjct: 328 MTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGR 387

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
                  F  +    I  +    + L S + K  + ++A     EM+ +  R N V YS+
Sbjct: 388 FADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYST 447

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+S +  MG   + +  + +M+S+  + N A Y  +I      G+  KA+    E  S  
Sbjct: 448 LISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMS-- 505

Query: 345 GTGDPRVPNILLAAYINRN-----QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             G  R PNI+  + I  +     ++  A+  +N ++  G +P   T+  L  GY   G+
Sbjct: 506 -KGLHR-PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGK 563

Query: 400 MEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH----VS 454
           MEK        +   +   V  +  + + Y K    G ID     L+  R   H     +
Sbjct: 564 MEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCK---SGKIDDG---LILFREMLHKKVKPT 617

Query: 455 TEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           T  YN +L    +AG+      +   M      +D +T K+L
Sbjct: 618 TVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKIL 659



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 146/333 (43%), Gaps = 7/333 (2%)

Query: 144 SALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           +  L      K++ EA + L+ +MSE   +   + YN ++     + +  +   M+Q + 
Sbjct: 163 TTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMA 222

Query: 203 K---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           K     SPDVV++N  +     Q +   A   F E+ +  + PD  +Y+++     K   
Sbjct: 223 KEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARA 282

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            +KA   L++M  +    + V Y++++  Y+  G+  E  ++++KM S     +   ++ 
Sbjct: 283 MDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSS 342

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
            +SSL K G  + AE I+    +     D    +ILL  Y    +     + ++ +  KG
Sbjct: 343 FMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKG 402

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDID 438
           I        +L   + K+G M++ +  F +  G  VR  V  +  + +A+ ++      D
Sbjct: 403 IVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLA--D 460

Query: 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             E     +      +T +Y+SL+  +   G +
Sbjct: 461 AMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 2/231 (0%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P +VT+N  +         E A      +    I+PD ++ +TL S Y K    +     
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            +EM  +  +   V Y+ +L      G      +++ +M+     ++   Y  ++  L +
Sbjct: 606 FREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 665

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
               ++A  ++ +  ++    D  + N ++ A     + E A   +  + T G+ P  +T
Sbjct: 666 NDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVST 725

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           + ++    LK+G +E+    F     S     P  RL+      L ++GDI
Sbjct: 726 YGVMIRNLLKEGSVEEADTMFSSMEKS--GCAPSSRLLNDIIRMLLQKGDI 774


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 45/312 (14%)

Query: 140 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKV 194
           PD    + LL+ Y +  K  EAEAL+ +M E G   CPL    YN ++  Y  +GQ ++ 
Sbjct: 58  PDAIFFNTLLNGYCEAGKMKEAEALVLEMKERG---CPLITSSYNTLIKGYGLDGQPEEA 114

Query: 195 PQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
            ++LQE+ K  N+ P+  T+N+ + A A   + E A      ++   + PD +SY+TL  
Sbjct: 115 MKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQ 174

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM------- 305
           L+ K+  P  A   + EM+    R N   Y  +++ Y   G  DE LR+ ++M       
Sbjct: 175 LFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISP 234

Query: 306 ---------------------------MSLFAKMNDAE-YTCVISSLVKLGEFEKAENIY 337
                                      M  F    D + +  ++++    G  ++A+ + 
Sbjct: 235 TIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVL 294

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
              +      D    +IL+  Y  + + E  E+F N ++ + +KP   T+  +  GY   
Sbjct: 295 LRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSL 354

Query: 398 GQMEKVLECFKK 409
            QM+  +  F++
Sbjct: 355 AQMDDAMRVFQE 366



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 136/325 (41%), Gaps = 44/325 (13%)

Query: 186 ISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFL--ELKKTKIDP 242
           +S G   +V   L+ L+++   P   TY L L++  S  D    E   L  ++++  + P
Sbjct: 1   MSRGDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLIS--DGRLGEGPLLLQQMEEDNVIP 58

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D I ++TL + Y +    ++A   + EM++R C     +Y++L+  Y   G  +E +++ 
Sbjct: 59  DAIFFNTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLL 118

Query: 303 KKMM-SLFAKMNDAEYTCVISS-----------------------------------LVK 326
           ++M   + +K ND  +  +I +                                     K
Sbjct: 119 QEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAK 178

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           LG+   AEN+  E +++    + R   I++  YI   Q++ +     R+   GI P    
Sbjct: 179 LGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAV 238

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  GY +  +  KV + FK       K  PD +      N     G ID A+ +L+ 
Sbjct: 239 FNHLVKGYSESMKPHKVDKVFKLMENFGVK--PDVQTFGLIMNAWCSTGLIDEAKAVLLR 296

Query: 447 LRNAG-HVSTEIYNSLLRTYAKAGK 470
           ++          Y+ L++ Y++ G+
Sbjct: 297 MKEYDLQPDVMAYSILVKGYSRQGR 321


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 177/389 (45%), Gaps = 15/389 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT------CSALLHSYVQNKKSAEAEALM 163
           Y ++  LI     L   ++ FE   D M+G         C+ +L  ++++ ++ +A  L 
Sbjct: 121 YVLYDLLIRACCELKRGDDAFECF-DMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLY 179

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQ 222
            +M         + +N M+N+    G+L K  + +  ++     P+VVTYN  +    S+
Sbjct: 180 AEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSR 239

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
              E A   F  +K   + PD  +Y +  S   K    E+A+  L++M++   R   V Y
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTY 299

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           ++L+  Y N G  +       KM+        + Y  +I +L    + ++A+ I  E   
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D    NIL+  Y     ++ A + ++ +++KGI+P   T+  L +   K+G+M++
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQ 419

Query: 403 VLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNS 460
             + F+K    VRK + PD  +  A  +     G++D A  +L  +     V  E+ +N+
Sbjct: 420 ADDLFEKI---VRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNT 476

Query: 461 LLRTYAKAGKMPLI--IVERMQKDNVQMD 487
           L++   + GK+     ++E M+   ++ D
Sbjct: 477 LMQGRCREGKVEAARELIEEMKSRGIKPD 505



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 1/253 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+   + K  EA+ ++++MSE G +   + YN ++N Y   G + K   +  E+
Sbjct: 333 TYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P  VTY   +   + +   + A+  F ++ +  I PD I ++ L   +      
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   LKEM++     + V +++L+      G  +    + ++M S   K +   Y  +
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTL 512

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   K G+ + A  + DE  SI         N L+       + + AE     +++KGI
Sbjct: 513 ISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGI 572

Query: 381 KPCYTTWELLTWG 393
            P   T+  L  G
Sbjct: 573 TPNDNTYLSLIEG 585



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L++   +  +  +A+ L EK+   G     + +N +++ + +NG +D+   ML+E+
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM 462

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +    PD VT+N  +     +   E A +   E+K   I PD ISY+TL S Y K    
Sbjct: 463 DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDM 522

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM         + Y++L+         D   ++ K+M+S     ND  Y  +
Sbjct: 523 KDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSL 582

Query: 321 ISSL 324
           I  +
Sbjct: 583 IEGI 586



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 129/320 (40%), Gaps = 48/320 (15%)

Query: 136 KMRG--PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           K RG  PD  T  + +    +  K  EA  ++EKM E G     + YN +++ Y + G L
Sbjct: 253 KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNL 312

Query: 192 -----------------------------------DKVPQMLQEL-KKNTSPDVVTYNLW 215
                                              D+   +++E+ +K   PD VTYN+ 
Sbjct: 313 EMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNIL 372

Query: 216 LAA-CASQNDKETAEKAFL---ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           +   C   N K    KAF    E+    I P  ++Y++L  +  K    ++A    +++ 
Sbjct: 373 INGYCRCGNVK----KAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIV 428

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           ++    + + +++L+  +   G  D    + K+M  +    ++  +  ++    + G+ E
Sbjct: 429 RKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVE 488

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A  + +E +S     D    N L++ Y  R  ++ A    + +++ G  P   T+  L 
Sbjct: 489 AARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALI 548

Query: 392 WGYLKKGQMEKVLECFKKAI 411
            G  K  + +   +  K+ I
Sbjct: 549 QGLCKNEEGDHAEQLLKEMI 568


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 187/444 (42%), Gaps = 16/444 (3%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI-- 117
           R+   +G     +EL+ +++ L   +R+K A  VC + E+  D  L   D   + +LI  
Sbjct: 356 RQMTGQGLLPSTFELSLVLKGLLNDRRWKDA--VCLFEEMA-DSGLP--DVFTYNNLIHW 410

Query: 118 -SKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
             +   L  A N F+ +      P  +T ++LL  Y +     EA  L  +M   GF   
Sbjct: 411 HCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPN 470

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y  ++  YI+    D    +L E+K+N  S +  TYN+ +      +     +    
Sbjct: 471 VVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLK 530

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
                   P  ++Y+++ + ++K  +   A T  ++M ++    N + Y+S +  Y   G
Sbjct: 531 SFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTG 590

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D  L++   +     + +   Y  +I+   + G    A  +           +  V N
Sbjct: 591 CSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYN 650

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+  Y N N ++    FY  ++  GI    +T+  L  G+ K G +   LE + + +  
Sbjct: 651 SLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMA- 709

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM- 471
            + ++PD    TA  + L   GDIDGA+ LL  +R      +  IYN L+  Y +  K+ 
Sbjct: 710 -KGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQ 768

Query: 472 -PLIIVERMQKDNVQMDAETQKVL 494
               + + M    +Q D  T  +L
Sbjct: 769 EAFRLHDEMLNMGIQPDDTTYDIL 792



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 18/318 (5%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   PD+ +    L   A  +  + A   F+E++      D   +  L S  +K  + 
Sbjct: 149 VARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMH 208

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A     EM       ++  Y+  ++    +G     LR+ ++M  +     D  Y  +
Sbjct: 209 EDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTM 268

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  LVK G  E+A  + DE        D  V   L+  Y  R ++  A + +   +  GI
Sbjct: 269 VDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGI 328

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    + +L  G  + G  +K  E  ++  G  +  +P    ++     L        A
Sbjct: 329 VPTKVMYGVLIRGCDQVGMTQKAYELCRQMTG--QGLLPSTFELSLVLKGLLNDRRWKDA 386

Query: 441 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET-------- 490
             L   + ++G      YN+L+  + +A K+   L + +RM+K  V+    T        
Sbjct: 387 VCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGY 446

Query: 491 ------QKVLKITSEMPV 502
                  + +K+ SEMP+
Sbjct: 447 CKKGCMDEAVKLYSEMPM 464



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/459 (18%), Positives = 170/459 (37%), Gaps = 54/459 (11%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
            R +R LR++K      + C++             Y   +D++ K   +  A    + + 
Sbjct: 244 GRALRMLREMKEV--GFDTCDFT------------YRTMVDVLVKTGRMEEALRVNDEMR 289

Query: 135 DKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           D  +  D   A  L+  Y   ++   A  L ++  + G +   + Y  ++      G   
Sbjct: 290 DAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQ 349

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           K  ++ +++  +   P     +L L    +    + A   F E+  + + PD  +Y+ L 
Sbjct: 350 KAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLI 408

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + +     +A      M+K   + +   Y+SLL  Y   G  DE ++++ +M     K
Sbjct: 409 HWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFK 468

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  ++   +   +F+ A  + DE +    + +    N+L+      +++   +  
Sbjct: 469 PNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGM 528

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK----------------------- 408
               +++G  P   T+  +  G++K G M      ++                       
Sbjct: 529 LKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCR 588

Query: 409 --------KAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEI 457
                   K +  VR+    PD     A  N   ++G++  A  LLV L   G   +T +
Sbjct: 589 TGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVV 648

Query: 458 YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           YNSL+  Y     M  +    E M K  +  D  T   L
Sbjct: 649 YNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTL 687



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 111/272 (40%), Gaps = 38/272 (13%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + SA   ++ + +K   P+  T ++ +  Y +   S  A  ++  +   G     + YN 
Sbjct: 557 MGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNA 616

Query: 181 MLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++N +   G +    Q+L   LK   +P+ V YN  +    + N  +   K +  + K  
Sbjct: 617 LINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGG 676

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I  D  +Y+TL   + K                       VA++  L LY+ M  K  + 
Sbjct: 677 IVADTSTYTTLIDGFSK--------------------DGNVAFA--LELYSEMMAKGYIP 714

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
             +              +T +   L + G+ + A+ + +E   +    +  + N+L+  Y
Sbjct: 715 DAFT-------------FTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGY 761

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           +   +L+ A   ++ ++  GI+P  TT+++L 
Sbjct: 762 LRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 22/344 (6%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   L++  ++  K +EA  L+E+MSE G     + +N M+  Y   G++D     
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405

Query: 198 LQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + +++++  SPD VTYN  +       +   A +   E+ +  +  D ++ +T+     +
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  E+A   L    KR    + V+Y +L+  Y   G  D  L++W +M       +   
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y C+I  L + G+ E+A +  +E        D    N +L  Y     +E A  F+N++V
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI-TAAYN----KL 431
               KP   T  +L  G   +G +EK L+ F         WV   + I T  YN     L
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGVLEKALKLF-------NTWVSKGKAIDTVTYNTLITSL 638

Query: 432 EEQGDIDGAEHLLVTLR----NAGHVSTEIYNSLLRTYAKAGKM 471
            ++G +D A +LL  +        H +   YN+++     +G++
Sbjct: 639 CKEGRLDDAFNLLSEMEEKELGPDHYT---YNAIITALTDSGRI 679



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 6/336 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + +L +  +  +  +A  L+  M   G L     YN ++  Y   G L +   +
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 198 LQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++ + +N   PDV TYN+ +    ++   E A K   E++  K+ PD +SY+TL +  ++
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                +A   L+EM ++  + N V ++ ++  Y   G  D+      KM       +   
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I+   K G   +A    DE    +   D    N +L       +LE A    +   
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G      ++  L  GY K G +++ L+ + +     ++ +P           L + G 
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM--KEKEIIPSTVTYNCIIGGLCQCGK 538

Query: 437 IDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
            + A   L  L  +G +  E  YN++L  Y + G +
Sbjct: 539 TEQAISKLNELLESGLLPDETTYNTILHGYCREGDV 574



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 139/336 (41%), Gaps = 9/336 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSEC---GFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           TC+ LL+S V+   S       E  ++    G +     +N ++  Y    +     + L
Sbjct: 172 TCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFL 231

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
             + K N SPD VTYN  L     +     A    +++K   + P+  +Y+ L   Y KM
Sbjct: 232 NVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKM 291

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              ++AA  ++ M +     +   Y+ L++   N G  +E  ++  +M +L    +   Y
Sbjct: 292 GWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSY 351

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I+  ++  +  +A  + +E        +    NI++  Y    +++ A +   ++  
Sbjct: 352 NTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEE 411

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGD 436
            G  P   T+  L  GY K G M    E F+      RK +  D   +      L  +  
Sbjct: 412 SGFSPDCVTYNTLINGYCKAGNMG---EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK 468

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           ++ A  LL + R  G+   E+ Y +L+  Y K G +
Sbjct: 469 LEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNV 504


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 167/362 (46%), Gaps = 9/362 (2%)

Query: 116 LISKIRGLSSAENFFEN--LPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           L + IR ++ A    E   L D   GPD    +AL+ ++ +  +  +A A+  +M + G 
Sbjct: 144 LATAIRVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGV 203

Query: 172 LKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
               + YN +L++Y        +V +++  +K++  +PD  TYN  ++ C  +   + A 
Sbjct: 204 QPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAA 263

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           + F E+K +  +PD +++++L  +Y K    ++A   ++EME+  C  + V Y+SL+S Y
Sbjct: 264 QVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 323

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  ++ + + ++M     K +   YT +IS L + G+ + A   YDE        + 
Sbjct: 324 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNL 383

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N L+  +  R +     + ++   + G  P   TW  L   + + G   +V   FK+
Sbjct: 384 CTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 443

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
              +   ++P+     +  +     G  D A  +   +  AG +     YN++L   A+ 
Sbjct: 444 MKKA--GYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 501

Query: 469 GK 470
           G+
Sbjct: 502 GR 503



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 193/446 (43%), Gaps = 77/446 (17%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           KE G    +Y  N ++   R+   YK A +V + M+        SG              
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASG-------------- 273

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
                  FE  PDK+    T ++LL  Y + ++  EA  ++++M   G     + YN ++
Sbjct: 274 -------FE--PDKV----TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 320

Query: 183 NLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC--ASQNDKETAE---------- 229
           + Y+ +G L++   + QE++ K   PDVVTY   ++    A + D    E          
Sbjct: 321 SSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 380

Query: 230 -----------------------KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
                                    F E +     PD ++++TL +++ +  L  + +  
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            KEM+K      R  Y SL+S Y+  G  D  ++I+K+MM      + + Y  V+S+L +
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G +E+AE ++ E E      D    + LL AY N  +L+  ++  + + ++ I+P    
Sbjct: 501 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP--HN 558

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           W + T   L   ++  + E  +KA   +R  +   D  ++ A  +   +   +   E +L
Sbjct: 559 WLVKTL-VLVNSKVNNLAEA-EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL 616

Query: 445 VTLR-NAGHVSTEIYNSLLRTYAKAG 469
             ++ +A ++S   YNSL+  Y++ G
Sbjct: 617 SLMKESAINLSAATYNSLMHMYSRLG 642



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 46/311 (14%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y   G  D   Q+
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 475

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            + + +    PDV TYN  L+A A     E AEK F E+++    PD  SYS+L   Y  
Sbjct: 476 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535

Query: 257 MELPEK-----------------------------------AATTLKEMEKRTCRKNRVA 281
            +  +K                                   A     E+ ++ C  +   
Sbjct: 536 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 595

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIY 337
            ++++S+Y     K+ ++R  +K++SL  +    ++ A Y  ++    +LG+ EK ENI 
Sbjct: 596 LNAMVSIYG----KNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENIL 651

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S     D    N ++ AY  + Q++ A   ++ +   G+KP   T+ +    Y+  
Sbjct: 652 TEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSN 711

Query: 398 GQMEKVLECFK 408
              E+ +E  +
Sbjct: 712 SMFEEAIELVR 722



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +  +  +AE L  +M E         Y+ +L+ Y +  +LDK    
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK---- 541

Query: 198 LQELKKNTSPDVVTYNLWLAAC-----ASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           ++ L  +   + +  + WL        +  N+   AEKAFLEL++ +   D    + + S
Sbjct: 542 MKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVS 601

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           +Y K  +  K    L  M++     +   Y+SL+ +Y+ +G  ++   I  ++ S   + 
Sbjct: 602 IYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRP 661

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  VI +  + G+ ++A  ++ E +      D    NI + +Y++ +  E A    
Sbjct: 662 DRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELV 721

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             +VT+G KP   T+  +  GY + G++
Sbjct: 722 RYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 3/190 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L++S V N   AE   L  +   C      L  N M+++Y  N  + KV ++L  +K++ 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVL--NAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 206 -SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +    TYN  +   +   D E  E    E+K + + PD  SY+T+   Y +    ++A+
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM+    + + V Y+  +  Y +    +E + + + M++   K N+  Y  ++   
Sbjct: 684 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743

Query: 325 VKLGEFEKAE 334
            + G+   A+
Sbjct: 744 CRNGKLTDAK 753


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 167/404 (41%), Gaps = 8/404 (1%)

Query: 14  RVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKW--KEEGHTVHK 71
           R+      ++  L LA ++ G   R  L  R+LS      +       W  K+ G+  H 
Sbjct: 105 RILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYR-HS 163

Query: 72  YELNR-IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           YE+ + +++ L K++++     + E M  +    L    + V +   + +R +  A    
Sbjct: 164 YEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVL 223

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           + +P     PD      LL +  +N    EA +L E M    F      +  +L  +   
Sbjct: 224 DEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCRE 282

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G++ +   +L ++K+    PD+V YN  L   A       A     E+KK    P+  S+
Sbjct: 283 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF 342

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L   + K E  ++A     EM+   C  + V Y++L+S +   G  D+   I   M+ 
Sbjct: 343 TILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQ 402

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                +   Y C++ +  K  E E+   + +E   I    D  + N ++        L+ 
Sbjct: 403 KGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKE 462

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           A   +  +   G+ P   T+ L+  G+L +G + +  + FK+ +
Sbjct: 463 AVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMV 506



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 154/366 (42%), Gaps = 42/366 (11%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++R    ++  K A+EV + M  +Y  +     +   LD + K   +  A + FE++  +
Sbjct: 206 LMRRFASVRMVKKAVEVLDEMP-KYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR 264

Query: 137 MRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+    ++LL+ + +  K  EA+ ++ ++ E GF    + YN++L  Y   G++   
Sbjct: 265 FN-PNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDA 323

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             +L E+KK N  P+  ++ + + +       + A + F E++ +  + D ++Y+TL S 
Sbjct: 324 FDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISG 383

Query: 254 YIKMELPEKAATTL-----------------------------------KEMEKRTCRKN 278
           + K    +KA   L                                   +EM K  C  +
Sbjct: 384 FCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 443

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
              Y++++ L   +G   E +R+W +M +         Y  ++   +  G   +A + + 
Sbjct: 444 LNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFK 503

Query: 339 EWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           E         P+   +  L  A +   +LEMA++ ++ + TKG +   + W +       
Sbjct: 504 EMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFS 563

Query: 397 KGQMEK 402
            G +++
Sbjct: 564 NGHVKE 569



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           P V  +L+  + +   ++ A    + +   G +P    +  L     K G +++    F+
Sbjct: 200 PEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFE 259

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
                VR + P+ R  T+       +G I  A+H+LV ++ AG      +YN+LL  YA+
Sbjct: 260 DM--RVR-FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQ 316

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
           AGKM     ++  M+K N   +A +  +L
Sbjct: 317 AGKMRDAFDLLAEMKKVNCGPNAASFTIL 345


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 4/330 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+ +Y +     EA  +M  M++ G       YN ++N     G+  +   +L E 
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L    SPD  TYN  L     +++   A++ F E+ +  + PD +S+S+L +++ +    
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    ++M+K     + V Y+ L+  Y   G   E L+I  +M+     ++   Y  +
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++ L K      A+ ++DE        D      L+  +     +  A S +  +  + I
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 242

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP    +  L  G+ K G+MEK  E +   I   RK  P+H       N     G +  A
Sbjct: 243 KPDIVAYNTLIDGFCKVGEMEKASELWDGMIS--RKIFPNHITYGILINAYCSVGHVSEA 300

Query: 441 EHLLVTLRNAGHVSTEIY-NSLLRTYAKAG 469
             L   +   G   T +  N++++ Y ++G
Sbjct: 301 FRLWDVMIEKGIKPTLVTCNTVIKGYCRSG 330



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PDT +   LL    +    +EA+ +  +M   G +   + ++ ++ ++  N  LD+    
Sbjct: 69  PDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVY 128

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +++KK    PD V Y + +       +   A K   E+ +     D I+Y+T+ +   K
Sbjct: 129 FRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK 188

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            ++   A     EM +R    +   +++L+  +   G   + L ++  M     K +   
Sbjct: 189 EKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVA 248

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    K+GE EKA  ++D   S     +     IL+ AY +   +  A   ++ ++
Sbjct: 249 YNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI 308

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            KGIKP   T   +  GY + G   K  E   + I   +   PDH     +YN L   G
Sbjct: 309 EKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIA--KGVAPDH----ISYNTLINDG 361



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 3/222 (1%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           + S+ R L  A  +F ++      PD    + L+H Y +N    EA  + ++M E G + 
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 174

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
             + YN +LN       L    ++  E+ ++   PD  T+   +       +   A   F
Sbjct: 175 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 234

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             + +  I PD ++Y+TL   + K+   EKA+     M  R    N + Y  L++ Y ++
Sbjct: 235 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSV 294

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           G+  E  R+W  M+    K        VI    + G+  KA+
Sbjct: 295 GHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKAD 336


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 167/362 (46%), Gaps = 9/362 (2%)

Query: 116 LISKIRGLSSAENFFEN--LPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           L + IR ++ A    E   L D   GPD    +AL+ ++ +  +  +A A+  +M + G 
Sbjct: 126 LATAIRVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGV 185

Query: 172 LKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
               + YN +L++Y        +V +++  +K++  +PD  TYN  ++ C  +   + A 
Sbjct: 186 QPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAA 245

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           + F E+K +  +PD +++++L  +Y K    ++A   ++EME+  C  + V Y+SL+S Y
Sbjct: 246 QVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSY 305

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  ++ + + ++M     K +   YT +IS L + G+ + A   YDE        + 
Sbjct: 306 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNL 365

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N L+  +  R +     + ++   + G  P   TW  L   + + G   +V   FK+
Sbjct: 366 CTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKE 425

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
              +   ++P+     +  +     G  D A  +   +  AG +     YN++L   A+ 
Sbjct: 426 MKKA--GYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARG 483

Query: 469 GK 470
           G+
Sbjct: 484 GR 485



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 193/446 (43%), Gaps = 77/446 (17%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           KE G    +Y  N ++   R+   YK A +V + M+        SG              
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASG-------------- 255

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
                  FE  PDK+    T ++LL  Y + ++  EA  ++++M   G     + YN ++
Sbjct: 256 -------FE--PDKV----TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 302

Query: 183 NLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC--ASQNDKETAE---------- 229
           + Y+ +G L++   + QE++ K   PDVVTY   ++    A + D    E          
Sbjct: 303 SSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 362

Query: 230 -----------------------KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
                                    F E +     PD ++++TL +++ +  L  + +  
Sbjct: 363 PNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 422

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            KEM+K      R  Y SL+S Y+  G  D  ++I+K+MM      + + Y  V+S+L +
Sbjct: 423 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 482

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G +E+AE ++ E E      D    + LL AY N  +L+  ++  + + ++ I+P    
Sbjct: 483 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP--HN 540

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           W + T   L   ++  + E  +KA   +R  +   D  ++ A  +   +   +   E +L
Sbjct: 541 WLVKTL-VLVNSKVNNLAEA-EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL 598

Query: 445 VTLR-NAGHVSTEIYNSLLRTYAKAG 469
             ++ +A ++S   YNSL+  Y++ G
Sbjct: 599 SLMKESAINLSAATYNSLMHMYSRLG 624



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 46/311 (14%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y   G  D   Q+
Sbjct: 398 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 457

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            + + +    PDV TYN  L+A A     E AEK F E+++    PD  SYS+L   Y  
Sbjct: 458 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 517

Query: 257 MELPEK-----------------------------------AATTLKEMEKRTCRKNRVA 281
            +  +K                                   A     E+ ++ C  +   
Sbjct: 518 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 577

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIY 337
            ++++S+Y     K+ ++R  +K++SL  +    ++ A Y  ++    +LG+ EK ENI 
Sbjct: 578 LNAMVSIYG----KNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENIL 633

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S     D    N ++ AY  + Q++ A   ++ +   G+KP   T+ +    Y+  
Sbjct: 634 TEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSN 693

Query: 398 GQMEKVLECFK 408
              E+ +E  +
Sbjct: 694 SMFEEAIELVR 704



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +  +  +AE L  +M E         Y+ +L+ Y +  +LDK    
Sbjct: 468 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK---- 523

Query: 198 LQELKKNTSPDVVTYNLWLAAC-----ASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           ++ L  +   + +  + WL        +  N+   AEKAFLEL++ +   D    + + S
Sbjct: 524 MKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVS 583

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           +Y K  +  K    L  M++     +   Y+SL+ +Y+ +G  ++   I  ++ S   + 
Sbjct: 584 IYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRP 643

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  VI +  + G+ ++A  ++ E +      D    NI + +Y++ +  E A    
Sbjct: 644 DRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELV 703

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             +VT+G KP   T+  +  GY + G++
Sbjct: 704 RYMVTQGCKPNERTYNSIVEGYCRNGKL 731



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 3/190 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L++S V N   AE   L  +   C      L  N M+++Y  N  + KV ++L  +K++ 
Sbjct: 548 LVNSKVNNLAEAEKAFLELRQKRCSLDINVL--NAMVSIYGKNRMVRKVEKILSLMKESA 605

Query: 206 -SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +    TYN  +   +   D E  E    E+K + + PD  SY+T+   Y +    ++A+
Sbjct: 606 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 665

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM+    + + V Y+  +  Y +    +E + + + M++   K N+  Y  ++   
Sbjct: 666 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 725

Query: 325 VKLGEFEKAE 334
            + G+   A+
Sbjct: 726 CRNGKLTDAK 735


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 11/297 (3%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           P     N  +S   LD+   + +EL      +V ++N+ L A  S    + A + F E+ 
Sbjct: 226 PSPESCNAVLSRLPLDEAIALFRELPDK---NVCSHNILLKALLSAGRLKDACQHFDEMS 282

Query: 237 KTKIDPDWISYSTLTSLY-IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                PD ++Y T+   Y ++ EL E A   L EM  +    N   Y+S+++L  N G  
Sbjct: 283 SP---PDVVTYGTMVHGYCVRGEL-ENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQV 338

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + LR+ + M      ++   +T VIS     G+   A  +++E +      D      L
Sbjct: 339 SDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTAL 398

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       +L+ A+     +V KG+     T+ +L  GY K+G M +      + +G  R
Sbjct: 399 INGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVG--R 456

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +  P+    TA  + L +QGD+  A  LL  + N G  ++   YNSL+    K G +
Sbjct: 457 RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNL 513



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 138/338 (40%), Gaps = 55/338 (16%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++  +      A A  L E+M + G     + +  ++N     G+L +  ++LQE+  
Sbjct: 361 TTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVD 420

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K    DVVTY + +     + +   A +   E+   ++ P+ ++Y+ L+    K      
Sbjct: 421 KGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRA 480

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  +    N   Y+SL++     G  ++ +RI  +M +   + +   YT +I 
Sbjct: 481 ANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLID 540

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L K GEF++A N+  E                                   ++ KGIKP
Sbjct: 541 TLCKSGEFDRAHNMLQE-----------------------------------MLDKGIKP 565

Query: 383 CYTTWELLTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
              T+ +L  G+   G++E   K+LE   +   +VR  V         YN L +Q  ID 
Sbjct: 566 SIATYNVLMNGFCMSGRVEGGKKLLEWMLEK--NVRPNV-------VTYNSLMKQYCIDK 616

Query: 440 AEHLLVTLRNAGHVSTEI------YNSLLRTYAKAGKM 471
                  +    H S E+      YN L++ + KA  M
Sbjct: 617 NMKSTTEIYKGMH-SQEVAPNENTYNILIKGHCKARNM 653



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 1/220 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWL 216
           +A  +M +M   G       Y  +++    +G+ D+   MLQE L K   P + TYN+ +
Sbjct: 515 QAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLM 574

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                    E  +K    + +  + P+ ++Y++L   Y   +  +      K M  +   
Sbjct: 575 NGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVA 634

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N   Y+ L+  +       E L   ++M+    ++  + Y+ +I  L K  +F +A   
Sbjct: 635 PNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVF 694

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +D+  +   T +P V +  +    N + LE   +  + LV
Sbjct: 695 FDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELV 734



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 70/361 (19%), Positives = 140/361 (38%), Gaps = 45/361 (12%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKI--RG-LSSAENFFENLPDKMRGPD--TCS 144
           AL V E M +      V+ D  V   +IS    +G L++A   FE +  +    D  T +
Sbjct: 341 ALRVLEDMTMHG----VALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHT 396

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KK 203
           AL++   +  +  EA+ ++++M + G     + Y  +++ Y   G + +  ++  E+  +
Sbjct: 397 ALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGR 456

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             +P+VVTY         Q D   A +   E+    ++ +  +Y++L +   K    E+A
Sbjct: 457 RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQA 516

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              + EME    R +   Y++L+      G  D    + ++M+    K + A Y  +++ 
Sbjct: 517 MRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNG 576

Query: 324 LVKLGEFEKAE-----------------------------------NIYDEWESISGTGD 348
               G  E  +                                    IY    S     +
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               NIL+  +     ++ A  F+  ++ KG++   +++  L     KK +  +    F 
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFD 696

Query: 409 K 409
           K
Sbjct: 697 K 697


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 176/406 (43%), Gaps = 13/406 (3%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSEC 169
           +HL  + +   L     F E +  +   PD   C++L+  + ++ K+ +A  +ME +   
Sbjct: 112 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS 171

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL-AACASQNDKETA 228
           G +   + YN ++  Y  +G++DK  Q+L+ +  + +PDVVTYN  L + C S   KE  
Sbjct: 172 GAVPDVITYNVLIGGYCKSGEIDKALQVLERM--SVAPDVVTYNTILRSLCDSGKLKEAM 229

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
           E    ++++ +  PD I+Y+ L           +A   L EM K+ C+ + V Y+ L++ 
Sbjct: 230 EVLDRQMQR-ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 288

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
               G  DE ++    M     + N   +  ++ S+   G +  AE +  +      +  
Sbjct: 289 ICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               NIL+     +  L  A     ++   G  P   ++  L  G+ ++ +M++ +E  +
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
             +   R   PD          L + G  D A  +L  L + G     I YN+++    K
Sbjct: 409 IMVS--RGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466

Query: 468 AGKMPLI--IVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
            GK      ++E M++  ++ D  T   L   +  E  V E   IF
Sbjct: 467 VGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIF 512



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 3/211 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE    ++  K   P   T + L++   + +    A  ++EKM + G +   L YN +L+
Sbjct: 333 AERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLH 392

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            +    ++D+  + L+ +  +   PD+VTYN  L A       + A +   +L      P
Sbjct: 393 GFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSP 452

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I+Y+T+     K+   E AA  L+EM ++  + + + YS+LL      G  DE ++I+
Sbjct: 453 VLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIF 512

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             M  L  K +   Y  ++  L K  +  +A
Sbjct: 513 HDMEGLSIKPSAVTYNAIMLGLCKAQQTSRA 543


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 181/427 (42%), Gaps = 14/427 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  K++   + +C W+ L+   K     Y + ++   +      AE+ +  L + 
Sbjct: 125 VAVQLRMRKQWDSIISICRWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEA 184

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + L+ +Y  +    +AEA+  +M   G     + YN  +N  +  G  DK 
Sbjct: 185 RCIPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKA 244

Query: 195 PQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ + +KK+   P   TY + +           A K F E+      P+  +Y+ L + 
Sbjct: 245 EEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNA 304

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    ++M++     +  AY++L+  Y+  GY      I+  M  +  + +
Sbjct: 305 FAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPD 364

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  K G  + AE ++ + + +  T   +   +LL+AY     +   E   N
Sbjct: 365 RASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILN 424

Query: 374 RLVTKGIK-PCYTTWELLT-WGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           ++   G+K   Y    +L  +G L + G+ME+VL   +K       +V D        N+
Sbjct: 425 QMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKG-----SYVADISTYNILINR 479

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
             + G I+  E L   L + G       + S +  Y+K       L I E M  D    D
Sbjct: 480 YGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPD 539

Query: 488 AETQKVL 494
             T KVL
Sbjct: 540 GGTAKVL 546



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 44/268 (16%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           P+ C+  AL++++ +     +AE + E+M E G       YN ++  Y   G      ++
Sbjct: 293 PNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEI 352

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
              ++     PD  +YN+ + A      ++ AE  F ++K+  I P   S+  L S Y K
Sbjct: 353 FSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSK 412

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIWKKMMSLFAKMN 313
           M    K    L +M K   + +    +S+L+LY  +G     +EVLR+ +K  S  A + 
Sbjct: 413 MGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKG-SYVADI- 470

Query: 314 DAEYTCVISSLVKLGEFEKAENIYD------------EWESISGT--------------- 346
            + Y  +I+   + G  E+ E+++              W S  G                
Sbjct: 471 -STYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFE 529

Query: 347 --------GDPRVPNILLAAYINRNQLE 366
                    D     +LLAA  N +Q E
Sbjct: 530 EMIDDGCYPDGGTAKVLLAACSNEDQTE 557



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 3/199 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K      AE  F+++      P   S   LL +Y +     + E ++ +M 
Sbjct: 368 YNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMC 427

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           + G        N MLNLY   GQ  K+ ++L+ ++K +   D+ TYN+ +         E
Sbjct: 428 KSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIE 487

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             E  F  L    + PD +++++    Y K +L  K     +EM    C  +      LL
Sbjct: 488 RMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLL 547

Query: 287 SLYTNMGYKDEVLRIWKKM 305
           +  +N    ++V  + + M
Sbjct: 548 AACSNEDQTEQVTTVIRTM 566


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 5/318 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  +F ++      PD    + L++ Y +N   +EA  + +KM E G     + YN 
Sbjct: 341 LDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNT 400

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +LN       L     +  E+ ++   PD  T+   +     + +   A   F  + +  
Sbjct: 401 ILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN 460

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD ++Y+ L   + K    EKA     EM  R    N ++Y+ L++ Y N+G+  E  
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAF 520

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           R+W +M+    K        VI    + G+  KA+    +  S     D    N L+  +
Sbjct: 521 RLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           +    ++ A    N++ TKG++P   T+ ++  G+ ++G+M++     +K I   R   P
Sbjct: 581 VKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIE--RGIDP 638

Query: 420 DHRLITAAYNKLEEQGDI 437
           D    T   N    Q ++
Sbjct: 639 DRSTYTTLINGYVSQDNL 656



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 154/392 (39%), Gaps = 41/392 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+++Y +     EA  +M  MS  G       YN ++N     G+  +   +  E 
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L    SPD  TYN  L      N+   A+  F ++    + PD IS+S+L  +  +    
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    ++M+      + V Y+ L++ Y   G   E L I  KM+     ++   Y  +
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++ L K      A  ++DE        D      L+  +     +  A S +  +  K I
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI 461

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-------------RLITAA 427
           KP   T+ +L  G+ K  +MEK  E + + I   RK  P+H               ++ A
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMIS--RKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 428 YNKLEE----------------------QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
           +   +E                       GD+  A+  L  + + G     I YN+L+  
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 465 YAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           + K   M     ++ +M+   +Q D  T  V+
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVI 611



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 12/299 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++++  ++ K  + +  +  M + G     + YN ++N Y   G L +  +++  +
Sbjct: 187 TLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSM 246

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P + TYN  +     +     A+  F E+    + PD  +Y+TL     +    
Sbjct: 247 SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNF 306

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     +M  R    + +++SSL+ + +  G+ D+ L  ++ M +     ++  YT +
Sbjct: 307 LEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   + G   +A  I D+        D    N +L     +  L  A + ++ +V +G+
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGV 426

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            P + T+  L  G+ K+G M K L  F   I + +   PD       YN L     IDG
Sbjct: 427 VPDFCTFTTLIHGHCKEGNMGKALSLF--GIMTQKNIKPD----IVTYNIL-----IDG 474



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/355 (19%), Positives = 148/355 (41%), Gaps = 10/355 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           L+ SYVQ +K  E     + +   GFL      N +L   +  G +D   ++  E+ +  
Sbjct: 121 LIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSG 180

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              +V T N+ + A    +  +  +   +++++  I  D ++Y+TL + Y +  L  +A 
Sbjct: 181 IELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAF 240

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +  M  +  +     Y+++++     G       ++ +M+S+    +   Y  ++   
Sbjct: 241 EVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVES 300

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            +   F +A++I+ +      + D    + L+        L+ A  ++  + T G+ P  
Sbjct: 301 CRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN 360

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
             + +L  GY + G M + LE   K +  G     V  + ++    N L ++  +  A  
Sbjct: 361 VIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTIL----NGLCKKKLLADANA 416

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           L   +   G V     + +L+  + K G M   L +   M + N++ D  T  +L
Sbjct: 417 LFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ ++  Y ++   ++A+  + KM   G     + YN ++N ++    +DK   ++ ++
Sbjct: 537 TCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PDVVTYN+ L     Q   + AE    ++ +  IDPD  +Y+TL + Y+  +  
Sbjct: 597 ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNL 656

Query: 261 EKAATTLKEMEKR 273
           ++A     EM +R
Sbjct: 657 KEAFRFHDEMLQR 669



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K + L+ A   F+ + ++   PD C+   L+H + +     +A +L   M+
Sbjct: 398 YNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMT 457

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-------------------------- 201
           +       + YN +++ +    +++K  ++  E+                          
Sbjct: 458 QKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVS 517

Query: 202 ----------KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                     +K   P +VT N  +       D   A++   ++    + PD I+Y+TL 
Sbjct: 518 EAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLI 577

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + ++K E  +KA   + +ME +  + + V Y+ +L+ +   G   E   I +KM+     
Sbjct: 578 NGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGID 637

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDE 339
            + + YT +I+  V     ++A   +DE
Sbjct: 638 PDRSTYTTLINGYVSQDNLKEAFRFHDE 665



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 115/278 (41%), Gaps = 5/278 (1%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
            E+L+   S CG     L ++ ++  Y+   +L++     + L+ K     +   N  L 
Sbjct: 101 VESLISMSSTCGVDN--LVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLG 158

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   + A + + E+ ++ I+ +  + + + +   K    +     L +ME++    
Sbjct: 159 GLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFA 218

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V Y++L++ Y   G   E   +   M     K     Y  VI+ L K G + +A+ ++
Sbjct: 219 DIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVF 278

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +E  SI  + D    N LL      N    A+  ++ ++ +G+ P   ++  L     + 
Sbjct: 279 NEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRN 338

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           G +++ L  F+    S    VPD+ + T   N     G
Sbjct: 339 GHLDQALMYFRDMKTS--GLVPDNVIYTILINGYCRNG 374



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 9/203 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A   +  +  +   P+  S   L++ Y      +EA  L ++M 
Sbjct: 468 YNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMI 527

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     +  N ++  Y  +G L K  + L ++  +   PD +TYN  +         E
Sbjct: 528 RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVK---GE 584

Query: 227 TAEKAFLELKKTK---IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             +KAF  + K +   + PD ++Y+ + + + +    ++A   L++M +R    +R  Y+
Sbjct: 585 YMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYT 644

Query: 284 SLLSLYTNMGYKDEVLRIWKKMM 306
           +L++ Y +     E  R   +M+
Sbjct: 645 TLINGYVSQDNLKEAFRFHDEML 667


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 15/337 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL 201
           S +L     N  S  A  L + M++ G    P  + YN +++ +   G+  K   +  E+
Sbjct: 232 SIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEM 291

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   PDVVTYNL + A       + AE    ++      PD ++Y+ +   Y  +   
Sbjct: 292 TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRL 351

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++AA   ++M+ R    N V  +S L+     G   E   I+  M +   K +   Y  +
Sbjct: 352 KEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTL 411

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +      G F     +++  +S     D RV NIL+ AY  R  ++ A   +  +  +G+
Sbjct: 412 LHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGV 471

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGD 436
            P   T+  +   + + G++   +E F + +   R   P+    TA Y+ + +     G 
Sbjct: 472 SPDVVTYSTVISAFSRMGRLTDAMEKFNQMVA--RGIQPN----TAVYHSIIQGFCMHGG 525

Query: 437 IDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           +  A+ L+  + N G    +I  +NS++ +  K G++
Sbjct: 526 LVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 161/378 (42%), Gaps = 13/378 (3%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A + F  +  +   PD  T + ++ +  + +   +AE ++ +M+  G     + YN M++
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIH 343

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKID 241
            Y + G+L +  +M +++K +   P++V  N +LA+ C     KE AE  F  +      
Sbjct: 344 GYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAE-IFDSMTAKGHK 402

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD +SY TL   Y               M+      +   ++ L+  Y   G  D+ + I
Sbjct: 403 PDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLI 462

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           + +M       +   Y+ VIS+  ++G    A   +++  +     +  V + ++  +  
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCM 522

Query: 362 RNQLEMAESFYNRLVTKGI-KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              L  A+   + ++ KGI +P    +  +     K G++    + F        +  PD
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGER--PD 580

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIV 476
               T+  +     G +D A  +L  +   G V T+I  Y++LL  Y K G++   L + 
Sbjct: 581 VITFTSLIDGYCLVGKMDKAFKILDAMEVVG-VETDIVTYSTLLDGYFKNGRINDGLTLF 639

Query: 477 ERMQKDNVQMDAETQKVL 494
             MQ+  V+ +  T  ++
Sbjct: 640 REMQRKGVKPNTVTYGIM 657



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 142/344 (41%), Gaps = 16/344 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEK 165
           Y+  +   S++  L+ A   F  +  +   P+T  A+ HS +Q    +    +A+ L+ +
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNT--AVYHSIIQGFCMHGGLVKAKELVSE 535

Query: 166 MSECGFLKCPLP----YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           M   G    P P    +N ++N    +G++     +   +      PDV+T+   +    
Sbjct: 536 MINKGI---PRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYC 592

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K    ++   ++ D ++YSTL   Y K        T  +EM+++  + N V
Sbjct: 593 LVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTV 652

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y  +L+     G      + + +M+     +  + Y  ++  L +    ++A  ++ + 
Sbjct: 653 TYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL 712

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
            +++      + N ++ A     + E A+  +  +   G+ P  +T+ ++    LK G +
Sbjct: 713 GTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAV 772

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           E     F     S    VP  RL+      L E+G+I  A + L
Sbjct: 773 EDANNMFSSMEKS--GIVPGSRLLNRIIRMLLEKGEIAKAGNYL 814


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 184/442 (41%), Gaps = 45/442 (10%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQY---DIKLVSGDYAVHLDLISKIRGLSSAENF 129
           ++  +++ L     ++ A  + EW+ L +   ++K+        + ++ +    S A   
Sbjct: 165 DITGLLKGLDLSGNWERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKL 224

Query: 130 FENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           F+ +P +    D   C+ +LH+Y +  K   A  + EKM E G     + YN ML++Y  
Sbjct: 225 FDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGK 284

Query: 188 NGQL-DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            G+    + ++L E++ K    D  T    ++AC  +   + A + F +LK     P   
Sbjct: 285 MGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTA 344

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+++  ++ K  +  +A   LKEME   C  + + Y+ L++ Y   G+ DE   +   M
Sbjct: 345 TYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTM 404

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES----------------------- 342
            S     N   YT VI++  K G+ +KA  ++ + +                        
Sbjct: 405 ASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRS 464

Query: 343 -----------ISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
                      ++G    R+  N +LA    + + +        +   G +P   T+  L
Sbjct: 465 EDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTL 524

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
              Y + G    V + + + + +   + P      A  N L  +G+   AE +++ +R  
Sbjct: 525 ISAYGRCGSEVDVAKMYGEMVAA--GFTPCITTYNALLNALARRGNWKAAESVVLDMRKK 582

Query: 451 GHVSTEI-YNSLLRTYAKAGKM 471
           G    E  Y+ LL  Y+KAG +
Sbjct: 583 GFKPNETSYSLLLHCYSKAGNV 604



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 154/357 (43%), Gaps = 14/357 (3%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A  FF++L      P T +  ++L  + +     EA  ++++M +       + YN 
Sbjct: 324 LDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNE 383

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+  G  D+   ++  +  K   P+ +TY   + A     D + A + F ++K+  
Sbjct: 384 LVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELG 443

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+  +Y+ +  L  K    E     L +M+   C  +R+ ++++L++    G +  V 
Sbjct: 444 CVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVS 503

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           ++ ++M +   + +   +  +IS+  + G       +Y E  +   T      N LL A 
Sbjct: 504 QVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNAL 563

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEKV-LECFKKAIGSVR 415
             R   + AES    +  KG KP  T++ LL   Y K G    +EKV +E +   +    
Sbjct: 564 ARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHV--FP 621

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKM 471
            W+    L+   Y   +    + G E     L+N G+ +   + NS+L  + +  K+
Sbjct: 622 SWMLLRTLVLTNYKCRQ----LKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKL 674



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 1/173 (0%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ML++++ N +L+K  +ML  +      P++VTYN  +   A   D   AE+   +++ 
Sbjct: 662 NSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQN 721

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           + I PD +SY+T+   + K  L ++A   L EM     +   + +++ +S Y   G   E
Sbjct: 722 SGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAE 781

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
              + + M+      N+  Y  VI   +K  + ++A +   + + I  + D +
Sbjct: 782 ADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQ 834



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F  L +     D    +++L  +V+N+K  +A  +++ +   G     +
Sbjct: 635 KCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLV 694

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++LY   G   K  +ML++++ +  SPDVV+YN  +     +   + A +   E+
Sbjct: 695 TYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEM 754

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P  I+++T  S Y    L  +A   ++ M +  C  N + Y  ++  Y      
Sbjct: 755 TANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKH 814

Query: 296 DEVLRIWKKMMSLFAKMNDAEY----TCVISSL 324
            E +    K+  +    +D       +C+  SL
Sbjct: 815 KEAMDFVSKIKEIDISFDDQSLKKLASCIRESL 847



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 119/295 (40%), Gaps = 22/295 (7%)

Query: 124 SSAENFFENLPD-KMRG--PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           S +E+  + L D K+ G  PD  T + +L    +  K      ++ +M  CGF      +
Sbjct: 462 SRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETF 521

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +++ Y   G    V +M  E+     +P + TYN  L A A + + + AE   L+++K
Sbjct: 522 NTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRK 581

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+  SYS L   Y K          L+++E      +      LL       YK  
Sbjct: 582 KGFKPNETSYSLLLHCYSK----AGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYK-- 635

Query: 298 VLRIWKKMMSLFAKMNDAEY-------TCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             R  K M   F ++ +  Y         ++S  V+  + EKA  + D    +SG     
Sbjct: 636 -CRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIH-VSGLQPNL 693

Query: 351 VP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           V  N L+  Y        AE     +   GI P   ++  +  G+ KKG +++ +
Sbjct: 694 VTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAI 748


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 167/404 (41%), Gaps = 8/404 (1%)

Query: 14  RVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKW--KEEGHTVHK 71
           R+      ++  L LA ++ G   R  L  R+LS      +       W  K+ G+  H 
Sbjct: 82  RILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYR-HS 140

Query: 72  YELNR-IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           YE+ + +++ L K++++     + E M  +    L    + V +   + +R +  A    
Sbjct: 141 YEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVL 200

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           + +P     PD      LL +  +N    EA +L E M    F      +  +L  +   
Sbjct: 201 DEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCRE 259

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G++ +   +L ++K+    PD+V YN  L   A       A     E+KK    P+  S+
Sbjct: 260 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF 319

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L   + K E  ++A     EM+   C  + V Y++L+S +   G  D+   I   M+ 
Sbjct: 320 TILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQ 379

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                +   Y C++ +  K  E E+   + +E   I    D  + N ++        L+ 
Sbjct: 380 KGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKE 439

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           A   +  +   G+ P   T+ L+  G+L +G + +  + FK+ +
Sbjct: 440 AVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMV 483



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 154/366 (42%), Gaps = 42/366 (11%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++R    ++  K A+EV + M  +Y  +     +   LD + K   +  A + FE++  +
Sbjct: 183 LMRRFASVRMVKKAVEVLDEMP-KYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR 241

Query: 137 MRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+    ++LL+ + +  K  EA+ ++ ++ E GF    + YN++L  Y   G++   
Sbjct: 242 FN-PNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDA 300

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             +L E+KK N  P+  ++ + + +       + A + F E++ +  + D ++Y+TL S 
Sbjct: 301 FDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISG 360

Query: 254 YIKMELPEKAATTL-----------------------------------KEMEKRTCRKN 278
           + K    +KA   L                                   +EM K  C  +
Sbjct: 361 FCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 420

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
              Y++++ L   +G   E +R+W +M +         Y  ++   +  G   +A + + 
Sbjct: 421 LNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFK 480

Query: 339 EWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           E         P+   +  L  A +   +LEMA++ ++ + TKG +   + W +       
Sbjct: 481 EMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFS 540

Query: 397 KGQMEK 402
            G +++
Sbjct: 541 NGHVKE 546



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           P V  +L+  + +   ++ A    + +   G +P    +  L     K G +++    F+
Sbjct: 177 PEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFE 236

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
                VR + P+ R  T+       +G I  A+H+LV ++ AG      +YN+LL  YA+
Sbjct: 237 DM--RVR-FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQ 293

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
           AGKM     ++  M+K N   +A +  +L
Sbjct: 294 AGKMRDAFDLLAEMKKVNCGPNAASFTIL 322


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 162/368 (44%), Gaps = 11/368 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEA-EALMEKM 166
           YA+ +D  ++      A  FF  L       D    S LL  + + K++ EA + L+ + 
Sbjct: 80  YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRT 139

Query: 167 SECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
            E G +     YN +L    +   +GQ D + +M+ E     SPDVV YN  +     + 
Sbjct: 140 PELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEG 199

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D   A   F E+ +  I PD ++Y+++     K    +KA   L++M  +    N   Y+
Sbjct: 200 DVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYN 259

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+  Y++ G   E +R++K+M       +    + ++ SL K G+ ++A +++D     
Sbjct: 260 NLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 319

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D    NI+L  Y  +  L      ++ ++  GI P + T+ +    Y   G ++K 
Sbjct: 320 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKA 379

Query: 404 LECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSL 461
           +  F +     V+  V  +R + AA  ++   G +D A      + + G    +  YN L
Sbjct: 380 MIIFNEMRDHGVKPDVVTYRTVIAALCRI---GKMDDAMEKFNQMIDQGVAPDKYAYNCL 436

Query: 462 LRTYAKAG 469
           ++ +   G
Sbjct: 437 IQGFCTHG 444



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 119/294 (40%), Gaps = 11/294 (3%)

Query: 51  AKRSAAITMRKWKEEGHTVHKYEL---NRIVRELRKLKRYKHALEVCEWMELQYDI--KL 105
            K   A  + +   EG TV   ++   N ++    K      A ++ + M +Q  I   L
Sbjct: 162 GKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDL 220

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
           V+ +  VH   + K R +  AE F   + +K   P+  T + L++ Y    +  EA  + 
Sbjct: 221 VTYNSVVHA--LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVF 278

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQ 222
           ++M     L   +  + ++      G++ +   +   +  K  +PDV +YN+ L   A++
Sbjct: 279 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 338

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                    F  +    I PD+ +++     Y    + +KA     EM     + + V Y
Sbjct: 339 GCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 398

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            ++++    +G  D+ +  + +M+      +   Y C+I      G   K + I
Sbjct: 399 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 171/404 (42%), Gaps = 11/404 (2%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECG 170
           HL  + +   L     F EN+      PD   C+ L+  + +  K+ +A  ++E +   G
Sbjct: 108 HLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSG 167

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
            +   + YN M++ Y   G+++    +L  +  + SPDVVTYN  L +       + A +
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM--SVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               + +    PD I+Y+ L     +     +A   L EM  R C  + V Y+ L++   
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE ++    M S   + N   +  ++ S+   G +  AE +  +      +    
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             NIL+     +  L  A     ++   G +P   ++  L  G+ K+ +M++ +E  ++ 
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           +   R   PD          L + G ++ A  +L  L + G     I YN+++   AKAG
Sbjct: 406 VS--RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 470 KM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           K    + +++ M+  +++ D  T   L   ++ E  V E    F
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ I K   L  A  F  ++P     P+  T + +L S     +  +AE L+  M 
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             GF    + +N ++N     G L +   +L+++ K+   P+ ++YN  L     +   +
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +    +      PD ++Y+T+ +   K    E A   L ++  + C    + Y++++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   + +++  +M +   K +   Y+ ++  L + G+ ++A   + E+E +   
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVR 516

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            +    N ++       Q + A  F   ++ +G KP  T++ +L  G   +G  ++ LE
Sbjct: 517 PNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALE 575



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 3/220 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A +  E +P     P++ S   LLH + + KK   A   +E+M   G     + YN 
Sbjct: 360 LGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ML     +G+++   ++L +L  K  SP ++TYN  +   A       A K   E++   
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+YS+L     +    ++A     E E+   R N V ++S++         D  +
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAI 539

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                M++   K  +  YT +I  L   G  ++A  + +E
Sbjct: 540 DFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNE 579



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 3/169 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + +L +  ++ K  +A  ++ ++S  G     + YN +++     G+  K  ++
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L E++ K+  PD +TY+  +   + +   + A K F E ++  + P+ ++++++     K
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK 531

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
               ++A   L  M  R C+    +Y+ L+      G   E L +  ++
Sbjct: 532 TRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNEL 580


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 180/449 (40%), Gaps = 60/449 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEA-EALMEKM 166
           YA+ +D  ++      A  FF  L       D    S LL  + + K++ EA + L+ + 
Sbjct: 116 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRT 175

Query: 167 SECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
            E G +     YN +L    +   +GQ D + +M+ E     SPDVV YN  +     + 
Sbjct: 176 PELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEG 235

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D   A   F E+ +  I PD ++YS++     K    +KA   L++M  +    +   Y+
Sbjct: 236 DVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYN 295

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--- 340
           +L+  Y++ G   E +R++K+M       +      ++ SL K G+ ++A +++D     
Sbjct: 296 NLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMK 355

Query: 341 ----ESISGT-----------------------GDPRVP-----NILLAAYINRNQLEMA 368
               +  S T                       GD   P     N+L+ AY N   L+ A
Sbjct: 356 GQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 415

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
              +N +   G+KP   T+  +     + G+M+  +E F + I   +  VPD        
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID--QGVVPDKYAYHCLI 473

Query: 429 NKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM---------------- 471
                 G +  A+ L+  + N G  +    + S++    K G++                
Sbjct: 474 QGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITSEM 500
           P  +V  M  D   +  + +K L++   M
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAM 562



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 128/275 (46%), Gaps = 3/275 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  +   L+ S  +  K  EA  + + M+  G       Y  MLN Y + G L  +  +
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 198 LQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
               L    +PD+ T+N+ + A A+    + A   F E++   + P  ++Y T+ +   +
Sbjct: 384 FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   + A     +M  +    ++ AY  L+  +   G   +   +  ++M+   +++   
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVF 503

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I++L KLG    A+NI+D   ++    D  V N+L+  Y    ++E A   ++ +V
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           + GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 2/231 (0%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD V YN+ +         E A + F  +    I+P+ + Y TL + Y K+   ++  + 
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSL 593

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            +EM ++  + + + Y+ ++      G        + +M      MN   Y+ V+  L K
Sbjct: 594 FREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 653

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
              F++A  ++ E  +++   D    N ++A      ++E A+  +  +   G+ PC  T
Sbjct: 654 NRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVT 713

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           + ++    LK+G +E+  + F     +     PD RL+     +L ++ +I
Sbjct: 714 YSIMITNLLKEGLVEEAEDMFSSMQNA--GCEPDSRLLNHVVRELLKKNEI 762


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 180/449 (40%), Gaps = 60/449 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEA-EALMEKM 166
           YA+ +D  ++      A  FF  L       D    S LL  + + K++ EA + L+ + 
Sbjct: 116 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRT 175

Query: 167 SECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
            E G +     YN +L    +   +GQ D + +M+ E     SPDVV YN  +     + 
Sbjct: 176 PELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEG 235

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D   A   F E+ +  I PD ++YS++     K    +KA   L++M  +    +   Y+
Sbjct: 236 DVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYN 295

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--- 340
           +L+  Y++ G   E +R++K+M       +      ++ SL K G+ ++A +++D     
Sbjct: 296 NLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMK 355

Query: 341 ----ESISGT-----------------------GDPRVP-----NILLAAYINRNQLEMA 368
               +  S T                       GD   P     N+L+ AY N   L+ A
Sbjct: 356 GQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKA 415

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
              +N +   G+KP   T+  +     + G+M+  +E F + I   +  VPD        
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID--QGVVPDKYAYHCLI 473

Query: 429 NKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM---------------- 471
                 G +  A+ L+  + N G  +    + S++    K G++                
Sbjct: 474 QGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH 533

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITSEM 500
           P  +V  M  D   +  + +K L++   M
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAM 562



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 127/275 (46%), Gaps = 3/275 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  +   L+ S  +  K  EA  + + M+  G       Y  MLN Y + G L  +  +
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 198 LQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
               L    +P + T+N+ + A A+    + A   F E++   + P  ++Y T+ +   +
Sbjct: 384 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   + A     +M  +    ++ AY  L+  +   G   +   +  ++M+   +++   
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVF 503

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I++L KLG    A+NI+D   ++    D  V N+L+  Y    ++E A   ++ +V
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           + GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 102/231 (44%), Gaps = 2/231 (0%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD V YN+ +         E A + F  +    I+P+ + Y TL + Y K+   ++  + 
Sbjct: 534 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSL 593

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            +EM ++  + + + Y+ ++      G        + +M      MN   Y+ V+  L K
Sbjct: 594 FREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 653

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
              F++A  ++ E  +++   D    N ++A      ++E A+  +  +   G+ PC  T
Sbjct: 654 NRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVT 713

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           + ++    +K+G +E+  + F     +     PD RL+     +L ++ +I
Sbjct: 714 YSIMITNLIKEGLVEEAEDMFSSMQNA--GCEPDSRLLNHVVRELLKKNEI 762


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 169/411 (41%), Gaps = 58/411 (14%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQEL 201
           LL  + + K++ EA + L+ +  E G +     Y+ +L        +GQ D + +M+ E 
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SPDVV Y+  +     + D   A   F E+ +  I PD+++YS++     K    +
Sbjct: 212 GAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMD 271

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   L++M  +    N   Y++L+  Y++ G   E +R++K+M       +    + ++
Sbjct: 272 KAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 322 SSLVKLGEFEKAENIYDE--------------------------------WESISGTG-- 347
            SL K G+ ++A +++D                                 ++ + G G  
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIA 391

Query: 348 -DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N+L+ AY N   L+ A   +N +   G+KP   T+  +     + G+M+  +E 
Sbjct: 392 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTY 465
           F + I   +   PD              G +  A+ L+  + N G H+    ++S++   
Sbjct: 452 FNQMID--QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNL 509

Query: 466 AKAGKM----------------PLIIVERMQKDNVQMDAETQKVLKITSEM 500
            K G++                P  +V  M  D   +  + +K L++   M
Sbjct: 510 CKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T S L+ S  +  K  EA  + + M+  G       Y  MLN Y + G L 
Sbjct: 321 LPDVV----TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLV 376

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +PD+ T+N+ + A A+    + A   F E++   + PD ++Y T+ 
Sbjct: 377 DMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 436

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY  L+  +   G   +   +  ++M+    
Sbjct: 437 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMH 496

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++       V ++L+  Y    ++E A   
Sbjct: 497 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 164/404 (40%), Gaps = 49/404 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D   K   ++ A + F+ +  +   PD  T S+++H+  + +   +AEA + +M 
Sbjct: 222 YSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA--------- 217
             G L     YN+++  Y S GQ  +  ++ +E+++++  PDVVT ++ +          
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 341

Query: 218 ---------ACASQNDKETAEKAFLELKKTK-----------------IDPDWISYSTLT 251
                    A   QN    +    L    TK                 I PD  +++ L 
Sbjct: 342 EARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI 401

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y    + +KA     EM     + + V Y ++++    +G  D+ +  + +M+     
Sbjct: 402 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVA 461

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEM 367
            +   Y C+I      G   KA+ +  E   I   G   +  +  ++ IN      ++  
Sbjct: 462 PDKYAYHCLIQGFCTHGSLLKAKELISE---IMNNG-MHLDIVFFSSIINNLCKLGRVMD 517

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A++ ++  V  G+ P    + +L  GY   G+MEK L  F   + +     P+  +    
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA--GIEPNDVVYGTL 575

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
            N   + G ID    L   +   G   ST +YN ++    +AG+
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 135/353 (38%), Gaps = 40/353 (11%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + D    PD  +   ++ +  +  K  +A     +M + G       Y+ 
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K  +++ E+  N    D+V ++  +           A+  F       
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + P  + YS L   Y  +   EKA      M       N V Y +L++ Y  +G  DE L
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 300 RIWKKMM----------------SLF-------------------AKMNDAEYTCVISSL 324
            ++++M+                 LF                     MN   Y  V+  L
Sbjct: 590 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL 649

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K   F++A  ++ E  +++   +    N ++A      ++E A+  +  +   G+ PC 
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCV 709

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            T+ ++    +K+G +E+  + F     +     PD RL+     +L ++ +I
Sbjct: 710 VTYSIMITNLIKEGLVEEAEDMFSSMQNA--GCEPDSRLLNHVVRELLKKNEI 760


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 8/330 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L+ +Y Q ++ +EAEA    + E   +     Y  +L  Y  +GQL +   ++ E+++N 
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237

Query: 206 SPDVVT-YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            P   T YN +L         E A + +  +KK +   +  +Y  + ++Y K   P  + 
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSL 297

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              +EM+   C+ N   Y++L++ +   G  ++   ++++M     + +   Y  ++ + 
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 357

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G  + A  I+   E +    D    NIL+ A+      + AE+ +  L  +G++P  
Sbjct: 358 SRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTM 417

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            +  LL   + + G + +  E   +   S  +  PD   + A  N     G +D  E L 
Sbjct: 418 KSHMLLLSAHARSGNVARCEEVMAQLHKSGLR--PDTFALNAMLNAYGRAGRLDDMERLF 475

Query: 445 VTLR-----NAGHVSTEIYNSLLRTYAKAG 469
             +      +AG   T  YN L+  Y +AG
Sbjct: 476 AAMERGDGASAGAPDTSTYNVLVNAYGRAG 505



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 185/443 (41%), Gaps = 12/443 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  ++++  + VCEW+  +   +     Y + +D   + R LS AE  +  L + 
Sbjct: 142 VAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEA 201

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y  + +   AE ++ +M   G       YN  L+  +     +K 
Sbjct: 202 RCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKA 261

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ Q +KK     +  TY L +      N   ++ + F E+K     P+  +Y+ L + 
Sbjct: 262 VEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNA 321

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    +EM++     +  AY++L+  Y+  G       I+  M  +  + +
Sbjct: 322 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 381

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  ++AE  + E +        +   +LL+A+     +   E    
Sbjct: 382 RASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMA 441

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           +L   G++P       +   Y + G+   ME++    ++  G+     PD        N 
Sbjct: 442 QLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGA-SAGAPDTSTYNVLVNA 500

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP--LIIVERMQKDNVQMD 487
               G +D  E    +L   G  +  + + S +  YA+  +    L + E M       D
Sbjct: 501 YGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPD 560

Query: 488 AETQKVL--KITSEMPVSEVSSI 508
           A T KVL    + E  V +V++I
Sbjct: 561 AGTAKVLLAACSDERQVEQVTAI 583



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 12/259 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   ME     +     Y + +D   +   
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLME-HMGCEPDRASYNILVDAFGRAGL 397

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  F+ L  +   P   S   LL ++ ++   A  E +M ++ + G        N 
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNA 457

Query: 181 MLNLYISNGQLDKVPQMLQELKKNT-----SPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           MLN Y   G+LD + ++   +++       +PD  TYN+ + A       +  E AF  L
Sbjct: 458 MLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSL 517

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               +  D +++++    Y + +   +     +EM    C  +      LL+  ++    
Sbjct: 518 AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQV 577

Query: 296 DEVLRIWKKMM----SLFA 310
           ++V  I + M     +LFA
Sbjct: 578 EQVTAIVRSMHKDAKTLFA 596


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 161/364 (44%), Gaps = 5/364 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SA++ +Y ++    EA  +   M + G     + YN +++     G +  +V ++  E+ 
Sbjct: 116 SAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEML 175

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +N   PD +T+N  LA C+     E A     E+    ID D  +Y+TL     K    +
Sbjct: 176 RNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLD 235

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   + EM  +    N V YS+++  Y   G  D+   ++ +M  L   ++   Y  ++
Sbjct: 236 MAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLL 295

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   KLG FE+A ++  E E+     D    N LL  Y  + + ++    +  +  + + 
Sbjct: 296 SIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVS 355

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L   Y K G   + ++ F++   +  K   D  L +A  + L + G ++ A 
Sbjct: 356 PNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLK--ADVVLYSALIDALCKNGLVESAV 413

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
            LL  +   G   +   YNS++  + +      ++ +  Q   +Q+D+ +   ++  ++ 
Sbjct: 414 SLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKS 473

Query: 501 PVSE 504
            V++
Sbjct: 474 LVAD 477



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 134/282 (47%), Gaps = 4/282 (1%)

Query: 127 ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           E F E L + M+ PD  T ++LL    +      A +L  +M   G  +    YN +L+ 
Sbjct: 169 EIFDEMLRNGMQ-PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDA 227

Query: 185 YISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
               GQLD   +++ E+  KN  P+VVTY+  +   A     + A   F E+K   I  D
Sbjct: 228 VCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLD 287

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            +SY+TL S+Y K+   E+A    +EME    RK+ V Y++LL  Y      D V ++++
Sbjct: 288 RVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFE 347

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           +M +     N   Y+ +I    K G + +A +++ E++      D  + + L+ A     
Sbjct: 348 EMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNG 407

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            +E A S  + +  +GI+P   T+  +   + +    E V++
Sbjct: 408 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVD 449



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 6/251 (2%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S + S   ++   E A T  K            A+S+++S Y   GY +E ++I+  M  
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 308 LFAKMNDAEYTCVISSLVKLG-EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
              K N   Y  VI +  K G EF++   I+DE        D    N LLA        E
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A S    +V +GI     T+  L     K GQ++   E   +     +  +P+    + 
Sbjct: 201 AARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEM--PAKNILPNVVTYST 258

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDN 483
             +   + G +D A +L   ++  G     + YN+LL  YAK G+    + +   M+   
Sbjct: 259 MIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSG 318

Query: 484 VQMDAETQKVL 494
           ++ D  T   L
Sbjct: 319 IRKDVVTYNAL 329


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 149/331 (45%), Gaps = 6/331 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQEL 201
           +A++  Y ++ +  +   L++ M         + +N ++N    +G L       +L E+
Sbjct: 67  NAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEV 126

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++    PDV+TYN  ++AC+  ++ + A   F E+  ++  PD  +Y+ + S++ +    
Sbjct: 127 RQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKA 186

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    +E+ ++  + + V Y+SLL  +   G  D V R+ ++++    K +   Y  +
Sbjct: 187 QDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTM 246

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K+G  + A  +YDE  ++  T D     +L+ +    +++  A      +   G+
Sbjct: 247 IHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGL 306

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP   T+  L   Y K G+ E+ +  F   + S  K  PD        + +   GD+   
Sbjct: 307 KPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVK--PDRLAYLVMLDIIARSGDMRKL 364

Query: 441 EHLLVTLRNAGH-VSTEIYNSLLRTYAKAGK 470
             L  T+ N G+     +Y  +L   AK  +
Sbjct: 365 MALYQTMMNDGYRPDNALYQVMLAALAKGNE 395



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F  L +K   PD  T ++LL+++ +   +   E + E++   GF K  + YN M++
Sbjct: 189 AERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIH 248

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    +    A K   E+    + P
Sbjct: 249 MYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKP 308

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             +++S L   Y K    E+A  T   M     + +R+AY  +L +    G   +++ ++
Sbjct: 309 TLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALY 368

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           + MM+   + ++A Y  ++++L K  E+++ E +  + E +       V +IL+ A
Sbjct: 369 QTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIKA 424



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 11/271 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPL-PYNHMLNLYISNGQLDKV 194
           PD  T + L+ +  Q     +A A+ E+M  SEC   +  L  YN M++++   G+    
Sbjct: 133 PDVITYNTLISACSQGSNLDDAVAVFEEMMASEC---RPDLWTYNAMVSVHGRCGKAQDA 189

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            +M +EL +K   PD VTYN  L A A + D +T E+   EL +     D I+Y+T+  +
Sbjct: 190 ERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHM 249

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y KM   + A     EM    C  + V Y+ L+     M    +  ++ ++M     K  
Sbjct: 250 YGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPT 309

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN-QLEMAESFY 372
              ++ +I +  K G  E+A   +    + SG    R+  +++   I R+  +    + Y
Sbjct: 310 LVTFSALICAYAKGGRREEAVRTFSHMVA-SGVKPDRLAYLVMLDIIARSGDMRKLMALY 368

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             ++  G +P    ++++     K  + +++
Sbjct: 369 QTMMNDGYRPDNALYQVMLAALAKGNEYDEI 399



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 3/264 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +   S+   L  A   FE +      PD  T +A++  + +  K+ +AE +  ++ 
Sbjct: 138 YNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELV 197

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E GF    + YN +L  +   G  D V ++ +EL +     D +TYN  +         +
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLD 257

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   + E++     PD ++Y+ L     KM+    A   L+EM     +   V +S+L+
Sbjct: 258 LALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALI 317

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G ++E +R +  M++   K +   Y  ++  + + G+  K   +Y    +    
Sbjct: 318 CAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYR 377

Query: 347 GDPRVPNILLAAYINRNQLEMAES 370
            D  +  ++LAA    N+ +  E+
Sbjct: 378 PDNALYQVMLAALAKGNEYDEIEA 401



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 23/386 (5%)

Query: 118 SKIRGLSSAENFFENL---PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
            KI+    AENF + L   P   R     +AL+H+Y ++     A A+ + M E G L  
Sbjct: 601 GKIKLWQHAENFVKGLKQEPSIDR--RIWNALIHAYAESGLYEHARAVFDIMIEKGPLPT 658

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEK 230
               N M+   I +G+LD++  ++QEL+    K +   V+   L L A     D     K
Sbjct: 659 IDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVI---LMLDAFTKAGDIFEVMK 715

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            +  +K+    P+   Y ++ SL  + +        + EME+     +    ++LL +YT
Sbjct: 716 IYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYT 775

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  D+ + ++  ++    + N+  Y  +I    +    E+   + +E      T    
Sbjct: 776 GNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLE 835

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY---LKKGQMEKVLECF 407
               LLAA       E AE  +  + +KG +   + + +L   Y       + E++L   
Sbjct: 836 SYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASM 895

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA 466
           K+    +   +    ++  +Y      G  D AE +L +L+++   VST  Y+++   Y 
Sbjct: 896 KE--DGIEPTIATMHILMTSYGT---AGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYL 950

Query: 467 KAGKMPLIIVE--RMQKDNVQMDAET 490
           K G   L I +   M+ D V+ D + 
Sbjct: 951 KNGDYNLGITKLLEMKADGVKPDHQV 976



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 17/292 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +L ++ +     E   +   M E G+L     Y  M++L   N +   V  M+ E+
Sbjct: 696 TVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEM 755

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++    PD+   N  L       + +   + +  + +  ++P+  +Y+TL  +Y +   P
Sbjct: 756 ERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRP 815

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+  T L EM K+       +Y SLL+        ++  ++++++ S   ++N + Y  +
Sbjct: 816 EEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHML 875

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVT 377
           +          KAE +     S+   G +P +   +IL+ +Y      + AE   N L +
Sbjct: 876 MKIYRDACNHSKAEQL---LASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKS 932

Query: 378 KGIKPCYTTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLIT 425
             ++     +  +   YLK G     + K+LE   KA G      PDH++ T
Sbjct: 933 SSLEVSTLPYSTVFNAYLKNGDYNLGITKLLE--MKADGV----KPDHQVWT 978



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 61/322 (18%), Positives = 112/322 (34%), Gaps = 111/322 (34%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           +N M+ +Y  +G+ D V Q+L  ++                                   
Sbjct: 66  FNAMMGVYARSGRFDDVRQLLDAMRGQ--------------------------------- 92

Query: 238 TKIDPDWISYSTLTSLYIKMEL--PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +++PD +S++TL +   K     P  A   L E+ +   R + + Y++L+S  +     
Sbjct: 93  -ELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNL 151

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D+ + ++++MM+   + +   Y  ++S   + G   KA++                    
Sbjct: 152 DDAVAVFEEMMASECRPDLWTYNAMVSVHGRCG---KAQD-------------------- 188

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
                       AE  +  LV KG KP   T+  L + + K                   
Sbjct: 189 ------------AERMFRELVEKGFKPDAVTYNSLLYAFAK------------------- 217

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI 474
                             +GD D  E +   L  AG     I YN+++  Y K G++ L 
Sbjct: 218 ------------------EGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLA 259

Query: 475 --IVERMQKDNVQMDAETQKVL 494
             + + M+      DA T  VL
Sbjct: 260 LGLYDEMRALGCTPDAVTYTVL 281


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 179/420 (42%), Gaps = 15/420 (3%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS----GDYAVHLDLISKIRGLSSAE 127
           Y+ N I+RE+      K  LE C+  +  +  + V     G +     ++  +  L  A 
Sbjct: 27  YDANSILREI---VLSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEAT 83

Query: 128 NFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
             F  +      P T  C+ LLH + +  K+   +   + M   G       YN M++  
Sbjct: 84  QCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCM 143

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G ++    + +E+K +   PD VTYN  +         +     F E+K    +PD 
Sbjct: 144 WKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDV 203

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           I+Y++L + + K     K     +EM++   + N V+YS+L+  +       + ++ +  
Sbjct: 204 ITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVD 263

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M  +    N+  YT ++ +  K+G    A  + +E   +    +      L+    +  +
Sbjct: 264 MRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAER 323

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           ++ AE  + ++VT G+ P   ++  L  G++K   M++ LE   +  G  R   PD  L 
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIQPDLLLY 381

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQK 481
                 L     I+ A+ ++  ++  G   +T IY +L+  Y K+G     L ++E MQ+
Sbjct: 382 GTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQE 441



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 4/301 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+      ++  EAE L  KM   G +     YN +++ ++    +D+  ++L EL
Sbjct: 310 TYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 369

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD++ Y  ++         E A+    E+++  I  + + Y+TL   Y K   P
Sbjct: 370 KGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNP 429

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-KMNDAEYTC 319
            +    L+EM++       V +  L+          + +  + +M + F  + N A YT 
Sbjct: 430 TEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTA 489

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K  + + A  ++++        D      L+   + +  +  A +  +++   G
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIG 549

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           +K     +  L WG+ +  Q++K     ++ IG   + +PD  L      K  E G ID 
Sbjct: 550 MKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIG--EEILPDEVLCIGVLKKHYELGCIDE 607

Query: 440 A 440
           A
Sbjct: 608 A 608


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 1/264 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T  +LL+ + Q  +  EA +L++ M   GF+   + YN ++N    N  L+   ++   +
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK    D VTYN  ++  ++      A +   ++ K KIDP+ I ++ L   ++K    
Sbjct: 211 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 270

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    KEM +R+   N   Y+SL++ +   G   +   ++  M+S     +   Y  +
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 330

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K    E    ++ E       GD    N L+  Y    +L +A+  +NR+V  G+
Sbjct: 331 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390

Query: 381 KPCYTTWELLTWGYLKKGQMEKVL 404
            P   T+ +L       G++EK L
Sbjct: 391 SPDIVTYNILLDCLCNNGKIEKAL 414



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+  F+ +  K   PD  T + L+  + ++K+  +   L  +M+  G +     YN 
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ Y   G+L+   ++   +     SPD+VTYN+ L    +    E A     +L+K++
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           +D D I+Y+ +     + +  ++A    + + ++  + + +AY +++S     G + E  
Sbjct: 425 MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 484

Query: 300 RIWKKM 305
           ++ ++M
Sbjct: 485 KLCRRM 490



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H Y Q  K   A+ +  +M +CG     + YN +L+   +NG+++K   M+++L
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K+    D++TYN+ +      +  + A   F  L +  + PD I+Y T+ S   +  L 
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 480

Query: 261 EKAATTLKEMEK 272
            +A    + M++
Sbjct: 481 READKLCRRMKE 492



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 1/222 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +  +++ ++  G L +   + +E+ +++  P+V TYN  +           A+  F  + 
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                PD ++Y+TL + + K +  E       EM  +    +   Y++L+  Y   G  +
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 376

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
              +++ +M+      +   Y  ++  L   G+ EKA  + ++ +      D    NI++
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 436

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
                 ++L+ A   +  L  KG+KP    +  +  G  +KG
Sbjct: 437 QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 119/324 (36%), Gaps = 66/324 (20%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS------AEN 128
           N ++  L K +   +ALEV   ME     K +  D   +  LIS   GLS+      A  
Sbjct: 188 NTVINGLCKNRDLNNALEVFYCMEK----KGIRADAVTYNTLIS---GLSNSGRWTDAAR 240

Query: 129 FFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
              ++  +   P+    +AL+ ++V+     EA  L ++M     +     YN ++N + 
Sbjct: 241 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 300

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYN-LWLAACASQNDKE------------------ 226
            +G L     M   +  K   PDVVTYN L    C S+  ++                  
Sbjct: 301 IHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF 360

Query: 227 ----------------TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
                            A+K F  +    + PD ++Y+ L          EKA   ++++
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-- 328
           +K     + + Y+ ++          E   +++ +     K +   Y  +IS L + G  
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 480

Query: 329 -------------EFEKAENIYDE 339
                         F  +E IYDE
Sbjct: 481 READKLCRRMKEDGFMPSERIYDE 504


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 152/337 (45%), Gaps = 8/337 (2%)

Query: 120 IRG-LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           +RG   +A   F+ + DK   PD  T ++ +    + ++  EA  ++ K+ E G +   +
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++   + G LDK      E+  +     V TYNL + A   +   E AE    E+
Sbjct: 324 TYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           ++  ++PD ++Y+   + Y +    +KA +   EM ++  R     Y+SL+ ++      
Sbjct: 384 REKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRM 443

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            E    +KK +      +   +  +I      G  ++A  +  E ++     D    N L
Sbjct: 444 SEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTL 503

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SV 414
           +  Y    ++E A+   + +  +GIKP + ++  L  GY K+G M+  LE F + +    
Sbjct: 504 MQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGF 563

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
              +  +  +   Y+K+   G+ D AE LL  +++ G
Sbjct: 564 DPTLLTYNALIQGYSKI---GEADHAEELLREMQSKG 597



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N M+N+    G+  K    +  ++     P+VVTYN  +     +   E A K F  +K
Sbjct: 220 FNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMK 279

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +Y++  S   K    E+A+  L ++ +     N V Y++L+    N G  D
Sbjct: 280 DKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLD 339

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +      +MM+     +   Y  +I +L      E+AE++  E        D    NI +
Sbjct: 340 KAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQI 399

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             Y      + A S ++ +V K I+P   T+  L   + K+ +M +  E FKK+I     
Sbjct: 400 NGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIK--EG 457

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +PD  +  A  +     G+ID A  LL  + NA  V  E+ +N+L++ Y +  K+
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKV 513



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 36/243 (14%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+    K+  EAE ++++M E G     + YN  +N Y   G   K   +  E+
Sbjct: 359 TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFL--------------------------- 233
            +KN  P V TY   +     +N    AE+ F                            
Sbjct: 419 VEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNI 478

Query: 234 --------ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
                   E+   K+ PD ++++TL   Y +    E+A   L EM++R  + + ++Y++L
Sbjct: 479 DRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTL 538

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +S Y+  G   + L ++ +M+SL        Y  +I    K+GE + AE +  E +S   
Sbjct: 539 ISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGI 598

Query: 346 TGD 348
           T D
Sbjct: 599 TPD 601



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + ++   +      A + F+ + +K   P  +T ++L+  + +  + +EAE   +K  
Sbjct: 395 YNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSI 454

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G L   + +N +++ +  NG +D+  Q+L+E+      PD VT+N  +     +   E
Sbjct: 455 KEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVE 514

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K   E+K+  I PD ISY+TL S Y K    + A     EM         + Y++L+
Sbjct: 515 EAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALI 574

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             Y+ +G  D    + ++M S     +D+ Y  VI ++
Sbjct: 575 QGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 137/315 (43%), Gaps = 5/315 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D   K   + +A + F  + D    P   T   ++    +  +S E   L  K  
Sbjct: 322 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 381

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             GF+   +PYN +++ +I  G ++    + +E+ +   +P  VTY   +      N+ +
Sbjct: 382 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 441

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   ++K+  +  D  +Y TL   + K    + A   L E+       NR  Y+S++
Sbjct: 442 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 501

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + + NM   +E + ++KKM++     +   YT +I  L+K G    A +I+ E  S    
Sbjct: 502 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 561

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D R   +L+    N+ Q E A      +  K + P    +  L  G+ K+G +++    
Sbjct: 562 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 621

Query: 407 FKKAIGSVRKWVPDH 421
             + +   R  VPD+
Sbjct: 622 HDEMLD--RGLVPDN 634



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 7/357 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++ + V+    AEA  L + M  CG          ++  Y   G L     ++ E+
Sbjct: 112 TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEI 171

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   P+ VTY++ +  C    + E A + + E+K   I     S +++   Y+K +  
Sbjct: 172 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSW 231

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A T   +    +   N   +++LLS     G  +E   +W ++++     N   Y  +
Sbjct: 232 QNAFTMFND-ALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNI 290

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    +      A  +Y E      T +     IL+  Y  +  +E A S ++R+    I
Sbjct: 291 ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANI 350

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P  TT  ++  G  K G+  +  + F K +   + +VP         +   ++G+I+ A
Sbjct: 351 LPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVS--QGFVPTCMPYNTIIDGFIKEGNINLA 408

Query: 441 EHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            ++   +   G   ST  Y SL+  + K   + L   ++  M++  ++MD +    L
Sbjct: 409 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTL 465



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 39/268 (14%)

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            + D  T ++ L AC  + +   AE+ FL+ K   ++ D  +YS                
Sbjct: 36  VTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSI--------------- 80

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
                            +  LL L  N GY    L + ++M +      +  +T VI++ 
Sbjct: 81  -----------------FVHLLCLKPNSGY---ALSLLREMRAAGWIPPEGTFTSVITAC 120

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           VK G   +A  + D+  +   + +  V   L+  Y  +  L  A    N +   G+ P  
Sbjct: 121 VKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNK 180

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            T+ +L  G  K G +EK  E + +     +R  V     I   Y K +   +   A  +
Sbjct: 181 VTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQN---AFTM 237

Query: 444 LVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
                 +G  +   +N+LL    K GKM
Sbjct: 238 FNDALESGLANVFTFNTLLSWLCKEGKM 265


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 177/426 (41%), Gaps = 9/426 (2%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           NRI++ LR       ALEV   M  +Y I+     Y   L    K   +  A +    + 
Sbjct: 206 NRILKILRDKNLLVKALEVYRMMG-EYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQ 264

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           ++   P   T + L++   +  +  +A+ L+++M++ G    P  YN ++  Y   G L 
Sbjct: 265 ERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLV 324

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +   + +E+  +  SP V ++N  +     +     A +   ++ K  + PD ISY+TL 
Sbjct: 325 EALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLI 384

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + ++    +A   L E+  R    N V Y++L+     +G  +  L++ + M++    
Sbjct: 385 YGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIH 444

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   YT +++   KLG    A+  +DE   +    D       +   +       A   
Sbjct: 445 PDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKL 504

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
              ++TKG  P   T+ +   G  K G +E+  E  +K I      VPDH   T+  +  
Sbjct: 505 QEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRD--GHVPDHVTYTSFMHAH 562

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDA 488
            E G +     +   + + G   T + Y  L+  +A  G++   +     MQ+  V  + 
Sbjct: 563 MENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNV 622

Query: 489 ETQKVL 494
            T  VL
Sbjct: 623 ITYNVL 628



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWL 216
           EA  L++KM   G +   + Y   ++ ++ NG L +  ++  + L +  +P VVTY + +
Sbjct: 535 EAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLI 594

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
            A A     + A   FLE+++  + P+ I+Y+ L + + K+   ++A     EM+++   
Sbjct: 595 HAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIF 654

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
            N+  Y+ L++   NMG   E LR++ +M+ 
Sbjct: 655 PNKYTYTILINENCNMGKWQEALRLYAQMLG 685



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 3/288 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +S A     ++  K   PD  S   L++ + +     EA  L++++         + YN 
Sbjct: 358 MSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNT 417

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++     G L+   ++ +++  +   PDVVTY + +       +   A++ F E+    
Sbjct: 418 LIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVG 477

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD  +Y+      +K+    KA    +EM  +    + + Y+  ++    +G  +E  
Sbjct: 478 LAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAG 537

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            + +KM+      +   YT  + + ++ G   +   I+ +  S   T       +L+ A+
Sbjct: 538 ELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAH 597

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
               +L+ A +++  +  KG+ P   T+ +L  G+ K  +M++  + F
Sbjct: 598 ALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFF 645



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 15/272 (5%)

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F ++ + +  PD  + + +  +     L  KA    + M +   R     Y+++L  + 
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G     L +  KM       ++  +  +I+ L K GE ++A+ +  E         P 
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY 308

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N L+  Y  +  L  A + +  +VT+G+ P   +   + +G+ K+G+M    +     
Sbjct: 309 TYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDM 368

Query: 411 IGSVRKWVPDHRLITAAYNKLE----EQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRT 464
           +   +  +PD      +YN L       G+I  A  LL  LR   ++S  I  YN+L+  
Sbjct: 369 LK--KNLMPD----IISYNTLIYGFCRLGNIGEAFILLDELR-FRNLSFNIVTYNTLIDG 421

Query: 465 YAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             + G +   L + E M    +  D  T  VL
Sbjct: 422 LCRLGDLETALKLKEDMINRGIHPDVVTYTVL 453



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 2/243 (0%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L    +PD   Y   +       D   A K   E+      PD I+Y+   +   K+   
Sbjct: 474 LHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNL 533

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   L++M +     + V Y+S +  +   G+  E   I+  M+S         YT +
Sbjct: 534 EEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVL 593

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +    G  + A   + E +      +    N+L+  +    +++ A  F+  +  KGI
Sbjct: 594 IHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGI 653

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+ +L       G+ ++ L  + + +G  ++  PD     A   KL++   +   
Sbjct: 654 FPNKYTYTILINENCNMGKWQEALRLYAQMLG--KRIRPDSCTHGALLKKLDKDYKVQAV 711

Query: 441 EHL 443
           + +
Sbjct: 712 QFI 714


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 1/264 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T  +LL+ + Q  +  EA +L++ M   GF+   + YN ++N    N  L+   ++   +
Sbjct: 676 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 735

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK    D VTYN  ++  ++      A +   ++ K KIDP+ I ++ L   ++K    
Sbjct: 736 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 795

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    KEM +R+   N   Y+SL++ +   G   +   ++  M+S     +   Y  +
Sbjct: 796 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 855

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K    E    ++ E       GD    N L+  Y    +L +A+  +NR+V  G+
Sbjct: 856 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 915

Query: 381 KPCYTTWELLTWGYLKKGQMEKVL 404
            P   T+ +L       G++EK L
Sbjct: 916 SPDIVTYNILLDCLCNNGKIEKAL 939



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 10/363 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +  R++     L+RY+  +   + MEL Y I      + + +    +   LS A +    
Sbjct: 73  DFTRLLTATANLRRYETVIYFSQKMEL-YGISHDLYSFTILIHCFCRCSRLSFALSVLGK 131

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      P   T  +LLH +    +  +A +L+  M + G+    + YN +++    NG+
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191

Query: 191 LDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           L+   ++L E+ KK    DVVTYN  L           A +   ++ K  I+PD ++++ 
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L  +++K    ++A    KEM + +   N V Y+S+++     G   +  + +  M S  
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   Y  +IS   K    ++   ++          D    N L+  Y    +L +A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF------KKAIGSVRKWVPDHRL 423
             +  +V++ + P   T  +L  G    G++E  L  F      +K IG V   +  H L
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 424 ITA 426
             A
Sbjct: 432 CKA 434



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 123  LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            L  A+  F+ +  K   PD  T + L+  + ++K+  +   L  +M+  G +     YN 
Sbjct: 830  LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 181  MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
            +++ Y   G+L+   ++   +     SPD+VTYN+ L    +    E A     +L+K++
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 949

Query: 240  IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            +D D I+Y+ +     + +  ++A    + + ++  + + +AY +++S     G + E  
Sbjct: 950  MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 1009

Query: 300  RIWKKM 305
            ++ ++M
Sbjct: 1010 KLCRRM 1015



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T + L+H Y Q  K   A+ +  +M +CG     + YN +L+   +NG+++K   M+++L
Sbjct: 886  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 945

Query: 202  KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +K+    D++TYN+ +      +  + A   F  L +  + PD I+Y T+ S   +  L 
Sbjct: 946  QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 1005

Query: 261  EKAATTLKEMEK 272
             +A    + M++
Sbjct: 1006 READKLCRRMKE 1017



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 1/222 (0%)

Query: 178  YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
            +  +++ ++  G L +   + +E+ +++  P+V TYN  +           A+  F  + 
Sbjct: 782  FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 841

Query: 237  KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                 PD ++Y+TL + + K +  E       EM  +    +   Y++L+  Y   G  +
Sbjct: 842  SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 901

Query: 297  EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
               +++ +M+      +   Y  ++  L   G+ EKA  + ++ +      D    NI++
Sbjct: 902  VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 961

Query: 357  AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
                  ++L+ A   +  L  KG+KP    +  +  G  +KG
Sbjct: 962  QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 119/324 (36%), Gaps = 66/324 (20%)

Query: 75   NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS------AEN 128
            N ++  L K +   +ALEV   ME     K +  D   +  LIS   GLS+      A  
Sbjct: 713  NTVINGLCKNRDLNNALEVFYCMEK----KGIRADAVTYNTLIS---GLSNSGRWTDAAR 765

Query: 129  FFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
               ++  +   P+    +AL+ ++V+     EA  L ++M     +     YN ++N + 
Sbjct: 766  LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 825

Query: 187  SNGQLDKVPQMLQEL-KKNTSPDVVTYN-LWLAACASQNDKE------------------ 226
             +G L     M   +  K   PDVVTYN L    C S+  ++                  
Sbjct: 826  IHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF 885

Query: 227  ----------------TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
                             A+K F  +    + PD ++Y+ L          EKA   ++++
Sbjct: 886  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 945

Query: 271  EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-- 328
            +K     + + Y+ ++          E   +++ +     K +   Y  +IS L + G  
Sbjct: 946  QKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQ 1005

Query: 329  -------------EFEKAENIYDE 339
                          F  +E IYDE
Sbjct: 1006 READKLCRRMKEDGFMPSERIYDE 1029


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PD+VTY + +     + D + A     ++++ K++P  + Y+T+     K +  
Sbjct: 8   VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 67

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    KEME +  R N V YSSL+S   N G   +  R+   M+      +   ++ +
Sbjct: 68  DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 127

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTK 378
           I + VK G+  +AE +YDE   +  + DP +     L+  +   ++L+ A+  +  +V+K
Sbjct: 128 IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 185

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
              P   T+  L  G+ K  ++E+ +E F++   S R  V +          L + GD D
Sbjct: 186 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM--SQRGLVGNTVTYNILIQGLFQAGDCD 243

Query: 439 GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
            A+ +   + + G V   I  YN+LL    K GK+   +++ E +Q+  ++
Sbjct: 244 MAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 293



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 120/272 (44%), Gaps = 3/272 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T   +++   +   +  A  L+ KM +       L YN +++       +D    +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E++ K   P+VVTY+  ++   +      A +   ++ + KI+PD  ++S L   ++K
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                +A     EM KR+   + V YSSL++ +      DE  ++++ M+S     +   
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 193

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    K    E+   ++ E       G+    NIL+         +MA+  +  +V
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           + G+ P   T+  L  G  K G++EK +  F+
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 285



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++    + K   +A  L ++M   G     + Y+ +++   + G+     ++L ++ +
Sbjct: 55  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 114

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PDV T++  + A   +     AEK + E+ K  IDP  ++YS+L + +   +  ++
Sbjct: 115 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  + C  + V Y++L+  +      +E + ++++M       N   Y  +I 
Sbjct: 175 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L + G+ + A+ I+ E  S     +    N LL       +LE A   +  L    ++P
Sbjct: 235 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 294

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ ++  G  K G++E   + F     S++   PD        +    +G  + A+ 
Sbjct: 295 TIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADA 352

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           L   ++  G + ++  YN+L+R   + G
Sbjct: 353 LFKEMKEDGTLPNSGCYNTLIRARLRDG 380



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 157/385 (40%), Gaps = 51/385 (13%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFE 131
           N I+  L K K    AL + + ME     K +  +   +  LIS +      S A     
Sbjct: 55  NTIIDGLCKYKHMDDALNLFKEME----TKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 110

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           ++ ++   PD  T SAL+ ++V+  K  EAE L ++M +       + Y+ ++N +  + 
Sbjct: 111 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 170

Query: 190 QLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           +LD+  QM + +  K+  PDVVTYN             T  K F + K+           
Sbjct: 171 RLDEAKQMFEFMVSKHCFPDVVTYN-------------TLIKGFCKYKRV---------- 207

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                       E+     +EM +R    N V Y+ L+      G  D    I+K+M+S 
Sbjct: 208 ------------EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 255

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   Y  ++  L K G+ EKA  +++  +           NI++       ++E  
Sbjct: 256 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 315

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITA 426
              +  L  KG+KP    +  +  G+ +KG  E+    FK  K  G++      + LI A
Sbjct: 316 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 375

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAG 451
                   GD + +  L+  +R+ G
Sbjct: 376 RL----RDGDREASAELIKEMRSCG 396


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 147/339 (43%), Gaps = 15/339 (4%)

Query: 141 DTCSALLHSY-------VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           + C+  +H+Y        +NKK  EA ALMEK++  G       YN +LN     G+L++
Sbjct: 253 NGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 312

Query: 194 VPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L+++  N  +PDVVTY   +     +     A K F E+    +  D + Y+ L  
Sbjct: 313 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIR 372

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
             ++     +A++  K M    C  + V  S+++   +  G     +RI+K M +     
Sbjct: 373 GLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N+  Y+ +I  L K  + + A  +  + +    T D    NIL+        +E A +F+
Sbjct: 433 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 492

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
           + ++  G KP   T+ +L  G  K G  +        A G +        + ++  + L 
Sbjct: 493 DEMLEAGCKPDVYTYNILISGLCKAGNTD-------AACGVLDDMSSSRFVYSSLVDGLC 545

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           + G ++G   L   +  +G  +++    L+    KA ++
Sbjct: 546 KSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRV 584



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 56/309 (18%)

Query: 120 IRGL------SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRGL        A + ++ +      PD  T S ++    +  +   A  + + M   G 
Sbjct: 371 IRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 430

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEK 230
               + Y+ +++      ++D   +ML ++KK   +PD +TYN+ +       D E A  
Sbjct: 431 APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 490

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F E+ +    PD  +Y+ L S   K    + A   L +M       +R  YSSL+    
Sbjct: 491 FFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS-----SRFVYSSLVDGLC 545

Query: 291 NMGYKDEVLRIWKKM---------------------------MSLFAKM------NDAEY 317
             G  +    ++ +M                           +SLF  +      +   Y
Sbjct: 546 KSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAY 605

Query: 318 TCVISSLVKLGEFEKAENIYDE----WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             +IS+L+K G+  + + +Y E    W+      D    N LL   I  N+++ A  +Y 
Sbjct: 606 NSIISALIKSGKVNEGQAVYQEMTRWWKP-----DRVTYNALLNGMIGANRMDRAHYYYL 660

Query: 374 RLVTKGIKP 382
            +  +G  P
Sbjct: 661 EMTGRGYVP 669



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 101/241 (41%), Gaps = 13/241 (5%)

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCRKNRVAYSSLLSLYTNM 292
           T   PD  +++ L + Y     PE+A   ++EME+      + + + +    L      +
Sbjct: 148 TIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVL 207

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              D    + + M      ++ A ++ +I+ LVK G   +A ++  E  +   T D    
Sbjct: 208 AAMDHFEAVRRSM-----PVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTY 262

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
             ++       +++ A +   ++   G  P   T+  L  G  K G++E+ ++  +K + 
Sbjct: 263 TAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 322

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +     PD    T+  + L ++     A  L   + + G  + T  Y +L+R   + GK+
Sbjct: 323 N--GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKI 380

Query: 472 P 472
           P
Sbjct: 381 P 381


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 129/274 (47%), Gaps = 1/274 (0%)

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           M G  TCS LL+   ++ K A+AE ++E +   G +   + YN ++N Y     L     
Sbjct: 153 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 212

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           + +++K ++  PD +TYN  +           AE   +E++K+ +DP   +++TL   Y 
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
                EK  T L +M+++  + + +++ S++  +   G   E + I   M+      N  
Sbjct: 273 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 332

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I + ++ G+ E+A  + ++ ++   +      N+LL      +Q++ AE     L
Sbjct: 333 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 392

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             +G++P   ++  +      KG  +K LE  ++
Sbjct: 393 RNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 426



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 5/285 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD  +YN+ +A          A K F E+    + P+WI+Y+T+   ++K    E     
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             +M     + N V Y+ LLS     G  DE   +  +M S     +   Y+ +   L +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            GE     +++ E             +ILL       ++  AE     LV  G+ P    
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  GY +   +      F++     R   PDH    A  N L +   +  AE L++ 
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQM--KSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 251

Query: 447 LRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDA 488
           +  +G   S E +N+L+  Y  AG++     ++  MQ+  ++ D 
Sbjct: 252 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDV 296



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 45/360 (12%)

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVV 210
           ++ K ++A  + ++M + G +   + YN M++ ++  G L+   ++  Q L     P++V
Sbjct: 28  RSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIV 87

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-----------TSLYIKMEL 259
           TYN+ L+        +       E+    + PD  +YS L           T L +  E 
Sbjct: 88  TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAES 147

Query: 260 PEK----AATTLKEMEKRTCRKNRVA--------------------YSSLLSLYTNMGYK 295
            +K     A T   +    C+  +VA                    Y++L++ Y  +   
Sbjct: 148 LKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDL 207

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--N 353
                I+++M S   + +   Y  +I+ L KL    KAE++  E E  SG  DP V   N
Sbjct: 208 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGV-DPSVETFN 265

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+ AY    QLE   +  + +  KGIK    ++  +   + K G++ + +      I  
Sbjct: 266 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI-- 323

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            +   P+ ++  +  +   E GD + A  L+  ++N+G VS  I  YN LL+   ++ ++
Sbjct: 324 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQI 382



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +++ ++ +N K  EA A+++ M           YN +++ YI +G  ++   +++++K 
Sbjct: 300 GSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN 359

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  S  +VTYNL L      +  + AE+    L+   + PD +SY+T+ S        +K
Sbjct: 360 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 419

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--------SLFAKMND 314
           A   L+EM K   R     Y +L+S   + G   ++  ++++M+        S++  M D
Sbjct: 420 ALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 479

Query: 315 AEYTC 319
           A   C
Sbjct: 480 AYVRC 484



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/300 (18%), Positives = 118/300 (39%), Gaps = 38/300 (12%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           ++R L  A   FE +  +   PD  T +AL++   + +   +AE L+ +M + G      
Sbjct: 203 QVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 262

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELK---------------------------------- 202
            +N +++ Y + GQL+K   +L +++                                  
Sbjct: 263 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 322

Query: 203 --KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K+ +P+   YN  + A     D E A     ++K + +    ++Y+ L     +    
Sbjct: 323 IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 382

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   +  +  +  R + V+Y++++S   N G  D+ L + ++M     +     Y  +
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +S+L   G     E +Y +    +      +  I++ AY+         S    +  KGI
Sbjct: 443 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 180/457 (39%), Gaps = 49/457 (10%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVH 113
           I   + +E G+ V+ +    ++R   +  R   AL + + M+   L  DI L    Y V 
Sbjct: 216 ILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVL----YNVC 271

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K   +  +  FF  +      PD  T ++++    +  +  EA  L E++ +   
Sbjct: 272 IDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
           + C   YN M+  Y S G+ D+   +L+  K K + P V+ YN  L     +   E A +
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALR 391

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIK-------------ME----LP------------- 260
            F E+K+  + P+  +Y+ L  +  +             ME     P             
Sbjct: 392 IFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLC 450

Query: 261 -----EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
                E+A +  + M+ + C  N V +SSL+      G  D+   +++KM+         
Sbjct: 451 KAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI 510

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            YT +I S  K G  E    IY E      + D  + N  +       + E   + +  +
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREI 570

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
              G  P   ++ +L  G +K G   +  E F       +  V D     A  +   + G
Sbjct: 571 NAHGFIPDARSYSILIHGLVKAGLANETYELFYAM--KEQGCVLDTHAYNAVIDGFCKSG 628

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            ++ A  LL  ++  GH  T + Y S++   AK  ++
Sbjct: 629 KVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRL 665



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 36/272 (13%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           S L+H  V+   + E   L   M E G +     YN +++ +  +G+++K  Q+L+E+K 
Sbjct: 583 SILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV 642

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY-------- 254
           K   P VVTY   +   A  +  + A   F E K   I  + + YS+L   +        
Sbjct: 643 KGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDE 702

Query: 255 ---------------------------IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
                                      +K E   +A    + M+   C  N++ YS L++
Sbjct: 703 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILIN 762

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               +   ++    W++M  L  K N   YT +IS L K G   +A  ++  +++  G  
Sbjct: 763 GLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIP 822

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           D    N ++    + N+   A + +     KG
Sbjct: 823 DSASYNAMIEGLSSANKAMDAYALFEETRLKG 854



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/347 (18%), Positives = 150/347 (43%), Gaps = 17/347 (4%)

Query: 114 LDLISKIRGLSSAENFF---ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
           + ++ +++  ++A N+F   E   +K+  P+  ++LL    +N +    E ++E+MS  G
Sbjct: 96  IGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSG 155

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F         ++   + + +L +   ++Q ++K    P    Y + + A +   + +   
Sbjct: 156 FGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPML 215

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F ++++   + +   ++TL  ++ +    + A + L EM+  +   + V Y+  +  +
Sbjct: 216 ILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCF 275

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  D   + + +M S     +D  YT +I  L K    ++A  ++++ E      + 
Sbjct: 276 GKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQ-----NR 330

Query: 350 RVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           +VP     N ++  Y +  + + A     R   KG  P    +  +     KK ++E+ L
Sbjct: 331 KVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEAL 390

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
             F++        VP + ++    + L  +G ++ A  +   +  AG
Sbjct: 391 RIFEEMKRDAVPNVPTYNILI---DMLCREGKLNAALEIRDDMERAG 434



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/345 (18%), Positives = 138/345 (40%), Gaps = 11/345 (3%)

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA-CASQNDKETAEK 230
           + CP  YN +L +   N + D + ++L+E+  +        ++ L A C        A  
Sbjct: 122 VHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFD 181

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               ++K K  P + +Y+ L     ++  P+       +M++     N   +++L+ ++ 
Sbjct: 182 IIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFA 241

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  D  L +  +M S     +   Y   I    K G+ + +   + E +S     D  
Sbjct: 242 REGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDV 301

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--K 408
               ++      N+L+ A   + +L      PC   +  +  GY   G+ ++       +
Sbjct: 302 TYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQ 361

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
           KA GS+   +  + ++T     L ++  ++ A  +   ++     +   YN L+    + 
Sbjct: 362 KAKGSIPSVIAYNCILTC----LGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCRE 417

Query: 469 GKM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           GK+   L I + M++  +  +  T  ++  ++     + E  SIF
Sbjct: 418 GKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIF 462


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 129/274 (47%), Gaps = 1/274 (0%)

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           M G  TCS LL+   ++ K A+AE ++E +   G +   + YN ++N Y     L     
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           + +++K ++  PD +TYN  +           AE   +E++K+ +DP   +++TL   Y 
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
                EK  T L +M+++  + + +++ S++  +   G   E + I   M+      N  
Sbjct: 451 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I + ++ G+ E+A  + ++ ++   +      N+LL      +Q++ AE     L
Sbjct: 511 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 570

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             +G++P   ++  +      KG  +K LE  ++
Sbjct: 571 RNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 39/291 (13%)

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +LN    +G++ K  Q+L+ L      P  V YN  +       D   A   F ++K   
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD I+Y+ L +   K+E+  KA   + EMEK     +   +++L+  Y   G  ++  
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            +   M     K +   +  V+ +  K G+  +A  I D+        + +V N ++ AY
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           I     E A     ++   G+     T+ LL  G  +  Q                    
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ-------------------- 559

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
                            ID AE L+ TLRN G     + YN+++      G
Sbjct: 560 -----------------IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKG 593



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 45/360 (12%)

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVV 210
           ++ K ++A  + ++M + G +   + YN M++ ++  G L+   ++  Q L     P++V
Sbjct: 206 RSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIV 265

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-----------TSLYIKMEL 259
           TYN+ L+        +       E+    + PD  +YS L           T L +  E 
Sbjct: 266 TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAES 325

Query: 260 PEK----AATTLKEMEKRTCRKNRVA--------------------YSSLLSLYTNMGYK 295
            +K     A T   +    C+  +VA                    Y++L++ Y  +   
Sbjct: 326 LKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDL 385

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--N 353
                I+++M S   + +   Y  +I+ L KL    KAE++  E E  SG  DP V   N
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGV-DPSVETFN 443

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+ AY    QLE   +  + +  KGIK    ++  +   + K G++ + +      I  
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI-- 501

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            +   P+ ++  +  +   E GD + A  L+  ++N+G VS  I  YN LL+   ++ ++
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQI 560



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +++ ++ +N K  EA A+++ M           YN +++ YI +G  ++   +++++K 
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN 537

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  S  +VTYNL L      +  + AE+    L+   + PD +SY+T+ S        +K
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--------SLFAKMND 314
           A   L+EM K   R     Y +L+S   + G   ++  ++++M+        S++  M D
Sbjct: 598 ALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657

Query: 315 AEYTC 319
           A   C
Sbjct: 658 AYVRC 662



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 122/321 (38%), Gaps = 42/321 (13%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAA 264
           PD   +N  + AC +  D + A      + +++    PD  SY+ + +   +      A 
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM       N + Y++++  +   G  +   R+  +M+    K N   Y  ++S L
Sbjct: 215 KVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGL 274

Query: 325 VKLGEFEKAENIYDE----------------WESISGTGDPR------------------ 350
            + G  ++   + DE                ++ ++ TG+ R                  
Sbjct: 275 CRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGA 334

Query: 351 -VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              +ILL       ++  AE     LV  G+ P    +  L  GY +   +      F++
Sbjct: 335 YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
                R   PDH    A  N L +   +  AE L++ +  +G   S E +N+L+  Y  A
Sbjct: 395 M--KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 469 GKMP--LIIVERMQKDNVQMD 487
           G++     ++  MQ+  ++ D
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSD 473



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/300 (18%), Positives = 118/300 (39%), Gaps = 38/300 (12%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           ++R L  A   FE +  +   PD  T +AL++   + +   +AE L+ +M + G      
Sbjct: 381 QVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 440

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELK---------------------------------- 202
            +N +++ Y + GQL+K   +L +++                                  
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500

Query: 203 --KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K+ +P+   YN  + A     D E A     ++K + +    ++Y+ L     +    
Sbjct: 501 IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   +  +  +  R + V+Y++++S   N G  D+ L + ++M     +     Y  +
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +S+L   G     E +Y +    +      +  I++ AY+         S    +  KGI
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 157/357 (43%), Gaps = 6/357 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+ LLH + +  K+ + +   + M   G       YN M++     G ++    + +E+
Sbjct: 229 SCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM 288

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD VTYN  +         +     F E+K    +PD I+Y+ L + + K    
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKL 348

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
                  +EM+    + N V+YS+L+  +   G   + ++ +  M  +    N+  YT +
Sbjct: 349 PIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  K+G    A  + +E   +    +      L+    +  +++ AE  + ++ T G+
Sbjct: 409 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 468

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   ++  L  G++K   M++ LE   +  G  R   PD  L       L     I+ A
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIKPDLLLYGTFIWGLCSLEKIEAA 526

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
           + ++  ++  G   ++ IY +L+  Y K+G     L +++ M++ ++++   T  VL
Sbjct: 527 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVL 583



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 4/304 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+      ++  EAE L  KM   G +     YN +++ ++    +D+  ++L EL
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 498

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD++ Y  ++    S    E A+    E+K+  I  + + Y+TL   Y K   P
Sbjct: 499 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-KMNDAEYTC 319
            +    L EM++       V +  L+          + +  + ++ + F  + N A +T 
Sbjct: 559 TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 618

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K  + E A  ++++        D      L+     +  +  A +  +++   G
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           +K     +  L WG     Q++K     ++ IG      PD  L  +   K  E G ID 
Sbjct: 679 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIH--PDEVLCISVLKKHYELGCIDE 736

Query: 440 AEHL 443
           A  L
Sbjct: 737 AVEL 740



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 121/301 (40%), Gaps = 14/301 (4%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           ++ + ++ I  G L++  Q   ++K+    P   + N  L   A     +  ++ F ++ 
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                P   +Y+ +     K    E A    +EM+ R    + V Y+S++  +  +G  D
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-- 354
           + +  +++M  +  + +   Y  +I+   K G+       Y E +     G+   PN+  
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK-----GNGLKPNVVS 369

Query: 355 ---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              L+ A+     ++ A  FY  +   G+ P   T+  L     K G +        + +
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK 470
               +W  +    TA  + L +   +  AE L   +  AG + +   YN+L+  + KA  
Sbjct: 430 QVGVEW--NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 471 M 471
           M
Sbjct: 488 M 488



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 75/421 (17%), Positives = 164/421 (38%), Gaps = 46/421 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCS--ALLHSYVQNKKSAEAEALMEK 165
           Y + +D + K   + +A   FE +  K RG  PDT +  +++  + +  +  +     E+
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEM--KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEE 322

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQND 224
           M +       + YN ++N +   G+L    +  +E+K N   P+VV+Y+  + A   +  
Sbjct: 323 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKM--------------------------- 257
            + A K ++++++  + P+  +Y++L     K+                           
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 442

Query: 258 --------ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
                   E  ++A     +M+      N  +Y++L+  +      D  L +  ++    
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            K +   Y   I  L  L + E A+ + +E +      +  +   L+ AY          
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
              + +    I+    T+ +L  G  K   + K ++ F + I +      +  + TA  +
Sbjct: 563 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR-ISNDFGLQANAAIFTAMID 621

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQM 486
            L +   ++ A  L   +   G V     Y SL+    K G +   L + ++M +  +++
Sbjct: 622 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681

Query: 487 D 487
           D
Sbjct: 682 D 682


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 137/315 (43%), Gaps = 5/315 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D   K   + +A + F  + D    P   T   ++    +  +S E   L  K  
Sbjct: 440 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 499

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             GF+   +PYN +++ +I  G ++    + +E+ +   +P  VTY   +      N+ +
Sbjct: 500 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   ++K+  +  D  +Y TL   + K    + A   L E+       NR  Y+S++
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 619

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + + NM   +E + ++KKM++     +   YT +I  L+K G    A +I+ E  S    
Sbjct: 620 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 679

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D R   +L+    N+ Q E A      +  K + P    +  L  G+ K+G +++    
Sbjct: 680 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 739

Query: 407 FKKAIGSVRKWVPDH 421
             + +   R  VPD+
Sbjct: 740 HDEMLD--RGLVPDN 752



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 151/357 (42%), Gaps = 7/357 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++ + V+    AEA  L + M  CG          ++  Y   G L     ++ E+
Sbjct: 230 TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEI 289

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   P+ VTY++ +  C    + E A + + E+K   I     S +++   Y+K +  
Sbjct: 290 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSW 349

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A T   +  + +   N   +++LLS     G  +E   +W ++++     N   Y  +
Sbjct: 350 QNAFTMFNDALE-SGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNI 408

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    +      A  +Y E      T +     IL+  Y  +  +E A S ++R+    I
Sbjct: 409 ILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANI 468

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P  TT  ++  G  K G+  +  + F K +   + +VP         +   ++G+I+ A
Sbjct: 469 LPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVS--QGFVPTCMPYNTIIDGFIKEGNINLA 526

Query: 441 EHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            ++   +   G   ST  Y SL+  + K   + L   ++  M++  ++MD +    L
Sbjct: 527 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTL 583



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 10/191 (5%)

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE+ FL+ K   ++ D  +YS    L         A + L+EM           ++S+++
Sbjct: 177 AEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVIT 236

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G   E LR+   M++    MN A  T ++      G    A  + +E   IS +G
Sbjct: 237 ACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE---ISESG 293

Query: 348 DPRVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              VPN     +L+        +E A  FY+ + TKGI+    +   +  GYLK    + 
Sbjct: 294 --LVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQN 351

Query: 403 VLECFKKAIGS 413
               F  A+ S
Sbjct: 352 AFTMFNDALES 362



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 7/191 (3%)

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           +  LL L  N GY    L + ++M +      +  +T VI++ VK G   +A  + D+  
Sbjct: 199 FVHLLCLKPNSGY---ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMV 255

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +   + +  V   L+  Y  +  L  A    N +   G+ P   T+ +L  G  K G +E
Sbjct: 256 NCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIE 315

Query: 402 KVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 460
           K  E + +     +R  V     I   Y K +   +   A  +      +G  +   +N+
Sbjct: 316 KAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQN---AFTMFNDALESGLANVFTFNT 372

Query: 461 LLRTYAKAGKM 471
           LL    K GKM
Sbjct: 373 LLSWLCKEGKM 383


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 151/341 (44%), Gaps = 15/341 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           SA++ S  ++ + ++A+ L  +M E G       YN M+  + S+G+     Q+LQE L+
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SPDVVTYN  + A   +     A + + E+    I P+ I+Y+++   + K +  + 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 378

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M  + C  +   +++L+  Y      D+ + +  +M       N   Y  +I 
Sbjct: 379 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 438

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT----- 377
               +G+   A ++  +  S     D    N LL    +  +L+ A   +  +       
Sbjct: 439 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 498

Query: 378 ------KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
                  G++P   T+ +L  G + +G+  +  E +++     R  VPD    ++  + L
Sbjct: 499 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM--PHRGIVPDTITYSSMIDGL 556

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +Q  +D A  + V++ +       + +N+L+  Y KAG++
Sbjct: 557 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 597



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 162/391 (41%), Gaps = 51/391 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K    S A+N F  + +K   PD  T ++++  +  + + ++AE L+++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           E       + YN ++N ++  G+  +  ++  E L +   P+ +TYN  +     Q+  +
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLD 377

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE  F  +      PD  +++TL   Y   +  +     L EM +R    N V Y++L+
Sbjct: 378 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI 437

Query: 287 SLYTNMGYKDEVLRIWKKMMS----------------------------LFAKMNDAE-- 316
             +  +G  +  L + ++M+S                            +F  M  ++  
Sbjct: 438 HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMD 497

Query: 317 ----------------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
                           Y  +I  L+  G+F +AE +Y+E        D    + ++    
Sbjct: 498 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 557

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
            +++L+ A   +  + +K   P   T+  L  GY K G+++  LE F +     R  V D
Sbjct: 558 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM--GRRGIVAD 615

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
             +         + G+I+GA  +   + ++G
Sbjct: 616 AIIYITLIYGFRKVGNINGALDIFQEMISSG 646



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 17/320 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L +AE+ F  +  K   PD  T + L+  Y   K+  +   L+ +M 
Sbjct: 363 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 422

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN +++ +   G L+    + Q++      PD+VT N  L         +
Sbjct: 423 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 482

Query: 227 TAEKAFLELKKTKID-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            A + F  ++K+K+D           PD ++Y+ L    I      +A    +EM  R  
Sbjct: 483 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 542

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + + YSS++         DE  +++  M S     N   +  +I+   K G  +    
Sbjct: 543 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLE 602

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++ E        D  +   L+  +     +  A   +  +++ G+ P   T   +  G+ 
Sbjct: 603 LFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFW 662

Query: 396 KKGQMEK---VLECFKKAIG 412
            K ++E+   +LE  + ++G
Sbjct: 663 SKEELERAVAMLEDLQMSVG 682



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 132/308 (42%), Gaps = 17/308 (5%)

Query: 175 PLP----YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
           PLP    +  ++ + +   + D V  + Q++ +K    D+ ++N+ +    S +    A 
Sbjct: 75  PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFAL 134

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F ++ K  + PD ++++TL       +   +A     +M + TCR N V +++L++  
Sbjct: 135 STFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGL 194

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G   E + +  +MM    +     Y  ++  + K G+   A N+  + E +S     
Sbjct: 195 CREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI--- 251

Query: 350 RVPNILLAAYI-----NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            +PN+++ + I        +   A++ +  +  KGI P   T+  +  G+   G+     
Sbjct: 252 -IPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLR 463
           +  ++ +   RK  PD     A  N   ++G    A  L   +   G +   I YNS++ 
Sbjct: 311 QLLQEMLE--RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 368

Query: 464 TYAKAGKM 471
            + K  ++
Sbjct: 369 GFCKQDRL 376



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/246 (17%), Positives = 105/246 (42%), Gaps = 2/246 (0%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A   F ++ +++  P  + +  L  + ++ME P+   +  ++ME++  R +  +++ L
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNIL 120

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + +       L  + K+  L    +   +T ++  L       +A + + +    + 
Sbjct: 121 IKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTC 180

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +      L+       ++  A +  +R++  G++P   T+  +  G  KKG     L 
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALN 240

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +K +  V   +P+  + +A  + L + G    A++L   ++  G       YNS++  
Sbjct: 241 LLRK-MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 465 YAKAGK 470
           +  +G+
Sbjct: 300 FCSSGR 305


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 186/425 (43%), Gaps = 17/425 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E  +   ++ +L + ++M+ Q   K     Y + + L+ +   L  +   FE +P  
Sbjct: 112 VFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTH 171

Query: 137 M--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDK 193
              R   + +AL++SY ++ +   +  L+E+M +       L YN ++N     G   + 
Sbjct: 172 GVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEG 231

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           +  +  E++ +   PD++TYN  L ACA++   + AE  F  + +  + PD  +Y  L  
Sbjct: 232 LLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVE 291

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            + K+   EK +  LKEME      +  +Y+ LL  Y + G     + ++++M       
Sbjct: 292 TFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVP 351

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   Y+ +++     G ++    ++ E +  +   D    N+L+  +      +   + +
Sbjct: 352 NAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLF 411

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAAY 428
           + +V + ++P   T+E L +   K G  E     +L   +K I      VP  +  T   
Sbjct: 412 HDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGI------VPSTKAYTGVI 465

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNVQ 485
               +    + A  +  T+   G   T E YNSL+  +A+ G  K    I+ +M +  V 
Sbjct: 466 EAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVA 525

Query: 486 MDAET 490
            D ++
Sbjct: 526 RDRDS 530



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 123/317 (38%), Gaps = 42/317 (13%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           NLPD      + + LL +Y        A  +  +M E   +   + Y+ +LNLY  +G+ 
Sbjct: 314 NLPD----ISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRY 369

Query: 192 DKVPQMLQELK------------------------------------KNTSPDVVTYNLW 215
           D V ++  E+K                                    +N  P++ TY   
Sbjct: 370 DDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGL 429

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           + AC      E A+K  L + +  I P   +Y+ +   Y +    E+A      M +   
Sbjct: 430 IYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGS 489

Query: 276 RKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           +     Y+SL++++   G YK+    +WK   S  A+  D+ +  VI    + G+FE+A 
Sbjct: 490 KPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDS-FNGVIEGYRQGGQFEEAI 548

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
             Y E E      D R    +L+ Y     ++ +E  +  +   GI P    + ++   Y
Sbjct: 549 KTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVY 608

Query: 395 LKKGQMEKVLECFKKAI 411
            +  + +   E   + +
Sbjct: 609 ARSNRWDDAYEVLDEMV 625



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/248 (18%), Positives = 100/248 (40%), Gaps = 16/248 (6%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++ +Y Q     EA  +   M+E G       YN ++N++   G   +   ++ ++ +
Sbjct: 462 TGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGE 521

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              + D  ++N  +         E A K ++EL+K +  PD  ++  + S+Y    L ++
Sbjct: 522 SGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDE 581

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--------LFAKMND 314
           +    +E+       + + Y  ++++Y      D+   +  +M++        +  KM  
Sbjct: 582 SEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMK 641

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
            +Y            ++  E ++D+  S       R  N LL A     Q E A    + 
Sbjct: 642 GDYD-------DYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSE 694

Query: 375 LVTKGIKP 382
            + +G+ P
Sbjct: 695 AIKRGLFP 702


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  +H   QN   + A  +M+ M + G       YN ++N    NG+LD+
Sbjct: 298 PDQV----TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 353

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ Q + +   PD  T+N  + A  SQN  E A     EL    + PD  +++ L +
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILIN 413

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P       +EM+   C  + V Y+ L+    +MG     L + K+M S     
Sbjct: 414 ALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPR 473

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I +L K    E+AE ++D+ ++   +      N L+       +++ A    
Sbjct: 474 STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELI 533

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            ++V +G++P   T+  +   Y K+G ++K
Sbjct: 534 EQMVKEGLQPSNITYNSILTHYCKQGDLKK 563



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 173/412 (41%), Gaps = 16/412 (3%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMR------GPDTCSALLHSYVQNKKSAEAEALM- 163
           AV+ ++I K+ G + A +  E L  +MR      G     + + SY + ++  +A  L+ 
Sbjct: 90  AVYEEIIQKL-GTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVR 148

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQ 222
            +++  G       YNH+LN+     ++  +  +  E+  +   PDVVT N  + A    
Sbjct: 149 NQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRA 208

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           +   TA     E+    + PD  +++TL   +I+    E A     +M +  C   RV  
Sbjct: 209 HQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTV 268

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           + L++ Y  MG  ++ L   +K ++   + +   Y   +  L + G    A  + D    
Sbjct: 269 NVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQ 328

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D    N ++       +L+ A+   N++V +G  P  TT+  L      + ++E+
Sbjct: 329 EGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEE 388

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSL 461
            L+  ++   +V+   PD        N L + GD      L   ++++G    E+ YN L
Sbjct: 389 ALDLAREL--TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 462 LRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           +      GK+   L +++ M+ +       T   +   +  +M + E   +F
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVF 498



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/480 (19%), Positives = 193/480 (40%), Gaps = 49/480 (10%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +R+ + EGH      +   V    +L+R+  A+++       + ++  +  Y   L++++
Sbjct: 112 VREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLA 171

Query: 119 KIRGLSSAENFFENLPDKMRGPD------------------------------------- 141
           +   +   E+ +  + D+   PD                                     
Sbjct: 172 EGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDET 231

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQE 200
           T + L+  +++      A  +  KM E G     +  N ++N Y   G++ D +  + +E
Sbjct: 232 TFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKE 291

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMEL 259
           +     PD VTYN ++  C  QN   +     ++L  +   DPD  +Y+T+ +   K   
Sbjct: 292 IADGFEPDQVTYNTFV-HCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A   + +M  R C  +   +++L+    +    +E L + +++       +   +  
Sbjct: 351 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNI 410

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I++L K+G+      +++E +S     D    NIL+    +  +L  A      + + G
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDI 437
                 T+  +     K+ ++E+  E F +  A G  R  V  + LI    + L +   I
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI----DGLCKAKRI 526

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL 494
           D A  L+  +   G   + I YNS+L  Y K G  K    I+E M  +  ++D  T   L
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 146/379 (38%), Gaps = 50/379 (13%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           +EGH    +  N ++  L K      A  +   M  +  +   +    + + L S+ R L
Sbjct: 328 QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR-L 386

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A +    L  K   PD  T + L+++  +         L E+M   G     + YN +
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 182 LNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLEL----- 235
           ++   S G+L     +L+E++ N  P   VTYN  + A   Q   E AE+ F ++     
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 236 ---------------KKTKID---------------PDWISYSTLTSLYIKMELPEKAAT 265
                          K  +ID               P  I+Y+++ + Y K    +KAA 
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAAD 566

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L+ M       + V Y +L++     G     L++ + M     +     Y  VI SL 
Sbjct: 567 ILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLF 626

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR------NQLEMAESFYNRLVTKG 379
           +      A +++ E   +   G+P  P+ L    + R        ++ A  F   +V KG
Sbjct: 627 RRNNLRDALSLFREMTEV---GEP--PDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKG 681

Query: 380 IKPCYTTWELLTWGYLKKG 398
             P ++++ +L  G L  G
Sbjct: 682 FMPEFSSFRMLAEGLLNLG 700



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/359 (18%), Positives = 147/359 (40%), Gaps = 14/359 (3%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ--YDIKLVSGDYAVHLDL 116
           ++K   +G    +   N  V  L +     HAL+V + M LQ  +D  + +  Y   ++ 
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM-LQEGHDPDVFT--YNTVINC 344

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +SK   L  A+     + D+   PDT +   L+ +     +  EA  L  +++  G    
Sbjct: 345 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPD 404

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
              +N ++N     G      ++ +E+K +  +PD VTYN+ +    S      A     
Sbjct: 405 VYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLK 464

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++        ++Y+T+     K    E+A     +M+     ++ V +++L+       
Sbjct: 465 EMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAK 524

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPR 350
             D+   + ++M+    + ++  Y  +++   K G+ +KA +I    E+++  G   D  
Sbjct: 525 RIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADI---LETMTANGFEIDVV 581

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               L+       + ++A      +  KGI+P    +  +     ++  +   L  F++
Sbjct: 582 TYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFRE 640


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 144/330 (43%), Gaps = 8/330 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L+ +Y Q ++ +EAEA    + E   +     Y  +L  Y  +GQL +   ++ E+++N 
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237

Query: 206 SPDVVT-YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            P   T YN +L         E A + +  +KK +   +  +Y+ + ++Y K   P  + 
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSL 297

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              +EM+   C+ N   Y++L++ +   G  ++   ++++M     + +   Y  ++ + 
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 357

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G  + A  I+   E +    D    NIL+ A+      + AE+ +  L  +G++P  
Sbjct: 358 SRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTM 417

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            +  LL   + + G + +  E   +   S  +  PD   + A  N     G +D  E L 
Sbjct: 418 KSHMLLLSAHARSGNVARCEEVMAQLHKSGLR--PDTFALNAMLNAYGRAGRLDDMERLF 475

Query: 445 VTLRN-----AGHVSTEIYNSLLRTYAKAG 469
             +       AG   T  YN ++  Y +AG
Sbjct: 476 AAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 185/443 (41%), Gaps = 12/443 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  ++++  + VCEW+  +   +     Y + +D   + R LS AE  +  L + 
Sbjct: 142 VAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEA 201

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y  + +   AE ++ +M   G       YN  L+  +     +K 
Sbjct: 202 RCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKA 261

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ Q +KK     +  TY L +      N   ++ + F E+K     P+  +Y+ L + 
Sbjct: 262 VEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNA 321

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    +EM++     +  AY++L+  Y+  G       I+  M  +  + +
Sbjct: 322 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 381

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  ++AE  + E +        +   +LL+A+     +   E    
Sbjct: 382 RASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMA 441

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           +L   G++P       +   Y + G+   ME++    ++  G++    PD        N 
Sbjct: 442 QLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAI-AGAPDTSTYNVMVNA 500

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK--MPLIIVERMQKDNVQMD 487
               G +D  E    +L   G  +  + + S +  YA+  +    L + E M       D
Sbjct: 501 YGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPD 560

Query: 488 AETQKVL--KITSEMPVSEVSSI 508
           A T KVL    + E  V +V +I
Sbjct: 561 AGTAKVLLAACSDERQVEQVKAI 583



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 12/259 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   ME     +     Y + +D   +   
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLME-HMGCEPDRASYNILVDAFGRAGL 397

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  F+ L  +   P   S   LL ++ ++   A  E +M ++ + G        N 
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNA 457

Query: 181 MLNLYISNGQLDKVPQMLQELKKNT-----SPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           MLN Y   G+LD + ++   +++       +PD  TYN+ + A       +  E AF  L
Sbjct: 458 MLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSL 517

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               +  D +++++    Y + +   +     +EM    C  +      LL+  ++    
Sbjct: 518 AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQV 577

Query: 296 DEVLRIWKKMM----SLFA 310
           ++V  I + M     +LFA
Sbjct: 578 EQVKAIVRSMHKDAKTLFA 596


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 157/357 (43%), Gaps = 6/357 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+ LLH + +  K+ + +   + M   G       YN M++     G ++    + +E+
Sbjct: 97  SCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM 156

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD VTYN  +         +     F E+K    +PD I+Y+ L + + K    
Sbjct: 157 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKL 216

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
                  +EM+    + N V+YS+L+  +   G   + ++ +  M  +    N+  YT +
Sbjct: 217 PIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 276

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  K+G    A  + +E   +    +      L+    +  +++ AE  + ++ T G+
Sbjct: 277 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 336

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   ++  L  G++K   M++ LE   +  G  R   PD  L       L     I+ A
Sbjct: 337 IPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIKPDLLLYGTFIWGLCSLEKIEAA 394

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
           + ++  ++  G   ++ IY +L+  Y K+G     L +++ M++ ++++   T  VL
Sbjct: 395 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVL 451



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 4/327 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+      ++  EAE L  KM   G +     YN +++ ++    +D+  ++L EL
Sbjct: 307 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 366

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD++ Y  ++    S    E A+    E+K+  I  + + Y+TL   Y K   P
Sbjct: 367 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 426

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-KMNDAEYTC 319
            +    L EM++       V +  L+          + +  + ++ + F  + N A +T 
Sbjct: 427 TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 486

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K  + E A  ++++        D      L+     +  +  A +  +++   G
Sbjct: 487 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 546

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           +K     +  L WG     Q++K     ++ IG      PD  L  +   K  E G ID 
Sbjct: 547 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIG--EGIHPDEVLCISVLKKHYELGCIDE 604

Query: 440 AEHLLVTLRNAGHVSTEIYNSLLRTYA 466
           A  L   L     ++++  N+L   Y+
Sbjct: 605 AVELQSYLMKHQLLTSDNDNALPNIYS 631



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 120/301 (39%), Gaps = 14/301 (4%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           ++ + ++ I  G L++  Q   ++K+    P   + N  L   A     +  ++ F ++ 
Sbjct: 63  FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                P   +Y+ +     K    E A    +EM+ R    + V Y+S++  +  +G  D
Sbjct: 123 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 182

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-- 354
           + +  +++M  +  + +   Y  +I+   K G+       Y E +     G+   PN+  
Sbjct: 183 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK-----GNGLKPNVVS 237

Query: 355 ---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              L+ A+     ++ A  FY  +   G+ P   T+  L     K G +        + +
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 297

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGK 470
               +W  +    TA  + L +   +  AE L   +  AG +     YN+L+  + KA  
Sbjct: 298 QVGVEW--NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 471 M 471
           M
Sbjct: 356 M 356



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 75/421 (17%), Positives = 164/421 (38%), Gaps = 46/421 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCS--ALLHSYVQNKKSAEAEALMEK 165
           Y + +D + K   + +A   FE +  K RG  PDT +  +++  + +  +  +     E+
Sbjct: 133 YNIMIDCMCKEGDVEAARGLFEEM--KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEE 190

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQND 224
           M +       + YN ++N +   G+L    +  +E+K N   P+VV+Y+  + A   +  
Sbjct: 191 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 250

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKM--------------------------- 257
            + A K ++++++  + P+  +Y++L     K+                           
Sbjct: 251 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 310

Query: 258 --------ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
                   E  ++A     +M+      N  +Y++L+  +      D  L +  ++    
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            K +   Y   I  L  L + E A+ + +E +      +  +   L+ AY          
Sbjct: 371 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 430

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
              + +    I+    T+ +L  G  K   + K ++ F + I +      +  + TA  +
Sbjct: 431 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR-ISNDFGLQANAAIFTAMID 489

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQM 486
            L +   ++ A  L   +   G V     Y SL+    K G +   L + ++M +  +++
Sbjct: 490 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 549

Query: 487 D 487
           D
Sbjct: 550 D 550


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 185/426 (43%), Gaps = 31/426 (7%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S ++     S A ++FE
Sbjct: 85  NNVINACGAAGNWKKALELCKKMTENG----VGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYI 186
            +       DT +   ++H  V+  +  EA  L   M E    KCP   + Y  +++ Y 
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE-RRTKCPPDVVTYTSIMHSYC 199

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ++    +   +  +   P++V YN  L A AS+     A   F  +KK  + PD +
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY++L + Y +   PEKA     +M+K +C+ N+V+Y++L+  Y + G   E + +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                + +    + ++++  +  +  + E I +   S     +    N  + +Y++    
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           E A   Y  +    +KP   T+ +L  G  K G+  + L  F+  +        D ++ +
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMV--------DSKVSS 431

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKD 482
               KL E      AE    +++ +G     + Y +L++ Y   G  K    + + M+ +
Sbjct: 432 TKEGKLSE------AESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVN 485

Query: 483 NVQMDA 488
            +  DA
Sbjct: 486 GIPPDA 491



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 137/352 (38%), Gaps = 41/352 (11%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           D    ++  Y ++ +  +A  L  +M E         YN +++ +   GQ      ++++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+    P   TYN  + AC +  + + A +   ++ +  + PD ++++ + S       
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--NDAEY 317
             KA +  + M+      +    + ++     +G   E + ++  M     K   +   Y
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++ S    G+ E  + I+D   +     +    N LL AY +R     A + +N +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            G++P   ++  L   Y +  Q EK  E F                     NK++     
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVF---------------------NKMK----- 285

Query: 438 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMD 487
                     +N+   +   YN+L+  Y  AG  K  + ++  M+KD +Q D
Sbjct: 286 ----------KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  + S LL +  + ++    E ++E     G     + YN  +  Y+S G  +K  ++
Sbjct: 326 PDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALEL 385

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKET------------------------AEKAF 232
              +++ N  PD VTYN+ ++  +S+  K T                        AE  F
Sbjct: 386 YTSMRESNVKPDAVTYNILISG-SSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTF 444

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +KK+   PD ++Y+TL   Y      ++A    KEME      + +  SSL+  +   
Sbjct: 445 SSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKG 504

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           G  + VL++ + M      +N   Y  +I+S   + +++ A  + +  +S
Sbjct: 505 GEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDS 554



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 189 GQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+L +       +KK+   PDV+TY   + A  +    + A   F E++   I PD I  
Sbjct: 435 GKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIIC 494

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S+L   + K   PE+    ++ M+K++   N+ +Y  +++  T       ++R WK    
Sbjct: 495 SSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCT-------MIRDWKTASE 547

Query: 308 LFAKMNDAEYTCVISSLVK----LGEFEKAENI 336
           +   ++ +  +  + +L      LG+  K EN+
Sbjct: 548 MIEYLDSSLSSISVGTLNHVLNFLGKCGKTENM 580


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 158/339 (46%), Gaps = 6/339 (1%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSA 145
           ++ ALEV EW+ L++     +   A  L ++ K    + A   F              +A
Sbjct: 200 WQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNA 259

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQELKK 203
           ++  Y +  +  + + L++ M   G     + +N ++N  + +G +  +   ++L E+++
Sbjct: 260 MMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR 319

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD++TYN  ++AC+ +++ E A K + ++   +  PD  +Y+ + S+Y +  +  +
Sbjct: 320 SGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSRE 379

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    K++E +    + V Y+SLL  +   G  D+V  I + M+ +    ++  Y  +I 
Sbjct: 380 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 439

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G+ + A  +Y + +    + D     +L+ +    N ++ A    + ++   +KP
Sbjct: 440 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKP 499

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
              T+  L  GY K G+  +  E F   + S  K  PDH
Sbjct: 500 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIK--PDH 536



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 3/234 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F++L  K   PD  T ++LL+++ +     + + + E M + GF K  + YN +++
Sbjct: 380 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 439

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   GQ D   Q+  ++K    SPD VTY + + +    N  + A +   E+    + P
Sbjct: 440 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKP 499

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              ++S L   Y K     +A  T   M +   + + +AYS +L +        + ++++
Sbjct: 500 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLY 559

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           ++M+    K + A Y  ++  L K    E    +  + E + G     + +IL+
Sbjct: 560 QEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILV 613



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 125/311 (40%), Gaps = 11/311 (3%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
            +L ++       E + + + M   G+      Y  M+ L     ++  V  M+ E++   
Sbjct: 890  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAX 949

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              PD+  +N  L       D +   + +  +++  + PD  +Y+TL  +Y +   PE+  
Sbjct: 950  FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 1009

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
            + + EM +         Y SL+S +  +   ++   +++ ++S   K++ + Y  ++   
Sbjct: 1010 SLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1069

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G   KAE +    +           ++L+ +Y    Q E AE   + L  +G+    
Sbjct: 1070 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLST 1129

Query: 385  TTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
              +  +   YLK G     ++K++E  K  +       PDHR+ T              A
Sbjct: 1130 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLE------PDHRIWTCFVRAASLSQHTSEA 1183

Query: 441  EHLLVTLRNAG 451
              LL  LR+ G
Sbjct: 1184 IVLLKALRDTG 1194



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+ ++   G     + YN +++       L++  ++  ++      PD+ TYN  ++   
Sbjct: 313 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 372

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  A + F +L+     PD ++Y++L   + +    +K     ++M K    K+ +
Sbjct: 373 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 432

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDE 339
            Y++++ +Y   G  D   +++   M L  +  DA  YT +I SL K    ++A  +  E
Sbjct: 433 TYNTIIHMYGKRGQHDLAFQLYSD-MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 491

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             +       R  + L+  Y    +   AE  ++ ++  GIKP +  + ++    L+  +
Sbjct: 492 MLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 551

Query: 400 MEKVLECFKKAIGSVRKWVPDHRL 423
             K ++ +++ +  +  + PDH L
Sbjct: 552 SGKAMKLYQEMV--LHSFKPDHAL 573



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 116/278 (41%), Gaps = 8/278 (2%)

Query: 139  GP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
            GP    D+ + L+ + + + +  E   +++++ + GF         ML+ +   G + +V
Sbjct: 844  GPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEV 903

Query: 195  PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             ++ Q +K     P +  Y + +   A        E    E++     PD   ++++  L
Sbjct: 904  KKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKL 963

Query: 254  YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
            Y  +   +K     + +++   + +   Y++L+ +Y      +E L +  +M  +  +  
Sbjct: 964  YTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPK 1023

Query: 314  DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
               Y  +IS+  KL   E+AE +++   S     D    +I++  + N      AE    
Sbjct: 1024 LDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLG 1083

Query: 374  RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFK 408
             +   G++P   T  LL   Y   GQ    EKVL+  K
Sbjct: 1084 VMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLK 1121



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 77   IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            ++    KL+  + A E+ E + L  + KL    Y + + +       S AE     + + 
Sbjct: 1030 LISAFGKLQMVEQAEELFEGL-LSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEA 1088

Query: 137  MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
               P   T   L+ SY  + +  EAE +++ +   G     LPY+ +++ Y+ NG  +  
Sbjct: 1089 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1148

Query: 195  PQMLQELKKNT-SPDVVTYNLWL-AACASQNDKET 227
             Q L E+KK+   PD   +  ++ AA  SQ+  E 
Sbjct: 1149 IQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEA 1183



 Score = 38.5 bits (88), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
            DT  +L+ ++ + +   +AE L E +   EC   +    Y+ M+ ++ ++G   K  ++L
Sbjct: 1025 DTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSF--YHIMMKMFRNSGNHSKAEKLL 1082

Query: 199  QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
              +K+    P + T +L + + +     E AEK    LK   +    + YS++   Y+K 
Sbjct: 1083 GVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKN 1142

Query: 258  ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------MSLF 309
                 A   L EM+K     +   ++  +   +   +  E + + K +        + L 
Sbjct: 1143 GDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRLL 1202

Query: 310  AKMNDAEYTCVISSLVKLGEFE 331
             + +D+  + V + L KLG  E
Sbjct: 1203 TEKSDSLVSEVDNCLEKLGPLE 1224


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 170/375 (45%), Gaps = 13/375 (3%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN--- 128
           + LN ++  L K+ ++  A+++   M  +      S D   +  +I         EN   
Sbjct: 294 FTLNIVIHCLVKVGQHGDAVDLLNSMREKR--VQCSPDVVTYTSIIHSYYVCGQVENCKA 351

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            F+ +  +   P+  S  ALL +Y  +    EA  + + + + G     + Y  +LN Y 
Sbjct: 352 VFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYG 411

Query: 187 SNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            + Q +K  ++  E++KN+  P+ V+YN  + A  S    + A     E++K  I PD +
Sbjct: 412 RSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVV 471

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           S STL +   +     K  T L+  + R    N VAY+S +  Y + G  ++ L+++  M
Sbjct: 472 SISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATM 531

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           M+     +   Y  +IS L KLG++ ++   +++   +       V + L+ +Y+ +++L
Sbjct: 532 MASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKL 591

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             AES +  +   G  P   T+  +   Y   G    V + FK+  G+    +PD  + +
Sbjct: 592 AEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAI--LPDAIICS 649

Query: 426 A---AYNKLEEQGDI 437
           +   A NK  + G +
Sbjct: 650 SLMEALNKGNQYGRV 664



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 42/360 (11%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N +V        +K ALE+C+ M        V  D   H  ++S  +     + A  +FE
Sbjct: 227 NNVVNACGAAGNWKKALELCKKMIRNG----VGPDLVTHNIVLSAFKNGFQYTKATGYFE 282

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYIS 187
            +      PDT +   ++H  V+  +  +A  L+  M E      P  + Y  +++ Y  
Sbjct: 283 MMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYV 342

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            GQ++    +   +  +   P++V+YN  L A AS      A   F  LK+  + PD +S
Sbjct: 343 CGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVS 402

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM- 305
           Y+TL + Y +   PEKA     EM K +C+ N+V+Y++L+  Y + G   E + +  +M 
Sbjct: 403 YTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEME 462

Query: 306 -----------MSLFAKMNDAEYTCVISSLVKLGEFEKAE-NI--YDEWESISGTGDPRV 351
                       +L A       T  I ++++  +F   E NI  Y+     SG G    
Sbjct: 463 KDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYN-----SGIG---- 513

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
                 +Y++    E A   Y  ++   + P   T+ +L  G  K G+  + L+ F+  +
Sbjct: 514 ------SYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMV 567



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 174/437 (39%), Gaps = 32/437 (7%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+      +HA+ V  WM+ Q +    +  Y + + L ++   +  A   F  + + 
Sbjct: 123 LIREMAFSGSLEHAVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEW 182

Query: 137 MRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD    ++L++++ +      A  +M+ M           YN+++N   + G   K 
Sbjct: 183 RCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNWKKA 242

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ +++ +N   PD+VT+N+ L+A  +      A   F  +K   I PD  + + +   
Sbjct: 243 LELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHC 302

Query: 254 YIKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+     A   L  M EKR  C  + V Y+S++  Y   G  +    ++  M++   K
Sbjct: 303 LVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVK 362

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  ++ +    G   +A  I+   +      D      LL AY    Q E A   
Sbjct: 363 PNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREV 422

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-----VPDHRLIT- 425
           +N +     KP   ++  L   Y   G        FK+AI  + +       PD   I+ 
Sbjct: 423 FNEMRKNSCKPNKVSYNALIDAYGSAGM-------FKEAISLLHEMEKDGIPPDVVSIST 475

Query: 426 --AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI----YNSLLRTYAKAG--KMPLIIVE 477
             AA  +  +   ID        L  A     E+    YNS + +Y   G  +  L +  
Sbjct: 476 LLAACGRCRQTTKID------TVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYA 529

Query: 478 RMQKDNVQMDAETQKVL 494
            M   NV  DA T  +L
Sbjct: 530 TMMASNVNPDAVTYNIL 546



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 38/241 (15%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  + S LL +  + +++ + + ++E     G     + YN  +  Y+S G  +K  ++
Sbjct: 468 PDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKL 527

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
              +   N +PD VTYN+ ++          + K F ++   +I      YS+L   Y+K
Sbjct: 528 YATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVK 587

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG--------YKD------------ 296
            +   +A +T   M+   C  + + Y++++  YT+ G        +K+            
Sbjct: 588 QDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAII 647

Query: 297 ---------------EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
                           VL++ K M     ++N   Y  +I+S   L +++ A  I +  +
Sbjct: 648 CSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLD 707

Query: 342 S 342
           S
Sbjct: 708 S 708


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 160/340 (47%), Gaps = 8/340 (2%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCS 144
           ++ ALEV EW+ L++     +   A  L ++ K    + A   F    +   G      +
Sbjct: 168 WQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFAR-AEAASGNTVQVYN 226

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQELK 202
           A++  Y +  +  + + L++ M   G     + +N ++N  + +G +  +   ++L E++
Sbjct: 227 AMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVR 286

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++   PD++TYN  ++AC+ +++ E A K + ++   +  PD  +Y+ + S+Y +  +  
Sbjct: 287 RSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSR 346

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A    K++E +    + V Y+SLL  +   G  D+V  I + M+ +    ++  Y  +I
Sbjct: 347 EAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTII 406

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G+ + A  +Y + +    + D     +L+ +    N ++ A    + ++   +K
Sbjct: 407 HMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVK 466

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           P   T+  L  GY K G+  +  E F   + S  K  PDH
Sbjct: 467 PTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIK--PDH 504



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F++L  K   PD  T ++LL+++ +     + + + E M + GF K  + YN +++
Sbjct: 348 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 407

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   GQ D   Q+  ++K    SPD VTY + + +    N  + A +   E+   ++ P
Sbjct: 408 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 467

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              ++S L   Y K     +A  T   M +   + + +AYS +L +        + ++++
Sbjct: 468 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLY 527

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           ++M+    K + A Y  ++  L K    E    +  + E + G     + +IL+
Sbjct: 528 QEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILV 581



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 127/315 (40%), Gaps = 11/315 (3%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            + + +L ++       E + + + M   G+      Y  M+ L     ++  V  M+ E+
Sbjct: 854  SITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM 913

Query: 202  K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +     PD+  +N  L       D +   + +  +++  + PD  +Y+TL  +Y +   P
Sbjct: 914  EVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRP 973

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            E+  + + EM +         Y SL+S +  +   ++   +++ ++S   K++ + Y  +
Sbjct: 974  EEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIM 1033

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            +      G   KAE +    +           ++L+ +Y    Q E AE   + L  +G+
Sbjct: 1034 MKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGL 1093

Query: 381  KPCYTTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
                  +  +   YLK G     ++K++E  K  +       PDHR+ T           
Sbjct: 1094 PLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLE------PDHRIWTCFVRAASLSQH 1147

Query: 437  IDGAEHLLVTLRNAG 451
               A  LL  LR+ G
Sbjct: 1148 TSEAIVLLKALRDTG 1162



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+ ++   G     + YN +++       L++  ++  ++      PD+ TYN  ++   
Sbjct: 281 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 340

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  A + F +L+     PD ++Y++L   + +    +K     ++M K    K+ +
Sbjct: 341 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 400

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDE 339
            Y++++ +Y   G  D   +++   M L  +  DA  YT +I SL K    ++A  +  E
Sbjct: 401 TYNTIIHMYGKRGQHDLAFQLYSD-MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 459

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             +       R  + L+  Y    +   AE  ++ ++  GIKP +  + ++    L+  +
Sbjct: 460 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 519

Query: 400 MEKVLECFKKAIGSVRKWVPDHRL 423
             K ++ +++ +  +  + PDH L
Sbjct: 520 SGKAMKLYQEMV--LHSFKPDHAL 541



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 117/278 (42%), Gaps = 8/278 (2%)

Query: 139  GP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
            GP    D+ + L+ + + + +  E   +++++ + GF         ML+ +   G + +V
Sbjct: 812  GPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEV 871

Query: 195  PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             ++ Q +K     P +  Y + +   A        E    E++  +  PD   ++++  L
Sbjct: 872  KKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKL 931

Query: 254  YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
            Y  +   +K     + +++   + +   Y++L+ +Y      +E L +  +M  +  +  
Sbjct: 932  YTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPK 991

Query: 314  DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
               Y  +IS+  KL   E+AE +++   S     D    +I++  + N      AE    
Sbjct: 992  LDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLG 1051

Query: 374  RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFK 408
             +   G++P   T  LL   Y   GQ    EKVL+  K
Sbjct: 1052 VMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLK 1089



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 77   IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            ++    KL+  + A E+ E + L  + KL    Y + + +       S AE     + + 
Sbjct: 998  LISAFGKLQMVEQAEELFEGL-LSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEA 1056

Query: 137  MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
               P   T   L+ SY  + +  EAE +++ +   G     LPY+ +++ Y+ NG  +  
Sbjct: 1057 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1116

Query: 195  PQMLQELKKNT-SPDVVTYNLWL-AACASQNDKET 227
             Q L E+KK+   PD   +  ++ AA  SQ+  E 
Sbjct: 1117 IQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEA 1151



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
            DT  +L+ ++ + +   +AE L E +   EC   +    Y+ M+ ++ ++G   K  ++L
Sbjct: 993  DTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSF--YHIMMKMFRNSGNHSKAEKLL 1050

Query: 199  QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
              +K+    P + T +L + + +     E AEK    LK   +    + YS++   Y+K 
Sbjct: 1051 GVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKN 1110

Query: 258  ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------MSLF 309
                 A   L EM+K     +   ++  +   +   +  E + + K +        + L 
Sbjct: 1111 GDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIRLL 1170

Query: 310  AKMNDAEYTCVISSLVKLGEFE 331
             + +D+  + V + L KLG  E
Sbjct: 1171 TEKSDSLVSEVDNCLEKLGPLE 1192


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 185/447 (41%), Gaps = 14/447 (3%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS-GDYAVHLDLIS 118
           R+  E+G     YE N +++ L + KR+K A+ +   ++L  D  +     Y   +  + 
Sbjct: 350 RQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGL---LKLVVDTGVPDVFTYGCLIHWLC 406

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K + L  A N ++ + +    P   T  +LL  Y +  +  EA  L  +M + GF    +
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEV 466

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++  YI     D    +L E+++N  S    TYN+ +      N     ++     
Sbjct: 467 TYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRF 526

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                 P  ++Y+++ + ++K  +   A    ++M K+    N V Y+S +  Y      
Sbjct: 527 LSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCC 586

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D  +++   +     + + A Y   I +  K G   +A +          T D  V N  
Sbjct: 587 DLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSF 646

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  Y N   +  A  FY  ++ + +      +  L  G+ K G +   LE + + + +  
Sbjct: 647 VTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMAN-- 704

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM-- 471
             +PD +  TA  + L   GDIDGA+ LL  +R    VS  I  YN L+    + GK+  
Sbjct: 705 HVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRL-DVSPNIVTYNMLINACVRDGKLQE 763

Query: 472 PLIIVERMQKDNVQMDAETQKVLKITS 498
              + + M    V  D  T  +L  T+
Sbjct: 764 AFQLHDEMLSSGVVPDDTTYDILPRTN 790



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 120/314 (38%), Gaps = 13/314 (4%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL--- 214
           E   L  +M E G L     +N ++   + + +      +L+ +     PDV TY     
Sbjct: 344 ETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIH 403

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
           WL  C  Q   E A   + ++K+  + P  ++Y +L   Y +    ++A     EM  + 
Sbjct: 404 WL--CKHQKLHE-AVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKG 460

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
              N V Y++L+  Y      D    +  +M        D  Y  +I+ L  +    + +
Sbjct: 461 FPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVD 520

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +   + S          N ++  ++    +  A   Y ++  KGI P   T+     GY
Sbjct: 521 EMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGY 580

Query: 395 LKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
            +    +  +    K +  VR+    PD     A  +   +QG++  A H LV L   G 
Sbjct: 581 CRTNCCDLAV----KLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGL 636

Query: 453 V-STEIYNSLLRTY 465
                +YNS +  Y
Sbjct: 637 TPDVTVYNSFVTGY 650



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 33/312 (10%)

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +  E++ K    D   Y++ + AC        A + F E+    + PD   Y+   S   
Sbjct: 172 LFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLC 231

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-MSLFAKMND 314
           K+   ++A   L +M +       + YSS++ +   +   DE LR+  +M ++   KM+ 
Sbjct: 232 KLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDV 291

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
              T ++      GE  KA +++DE  S   T       +L+         +       +
Sbjct: 292 VLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQ 351

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG----SVRKWVPDHRLITAAYNK 430
           ++ +G+ P    + L+  G L+  +       +K AIG     V   VPD        + 
Sbjct: 352 MIEQGLLPSTYEFNLVIKGLLRDKR-------WKDAIGLLKLVVDTGVPDVFTYGCLIHW 404

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAE 489
           L +   +  A +L   ++ AG   S   Y+SLL  Y + G+M                  
Sbjct: 405 LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRM------------------ 446

Query: 490 TQKVLKITSEMP 501
             + LK+ SEMP
Sbjct: 447 -DEALKLYSEMP 457


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 182/438 (41%), Gaps = 47/438 (10%)

Query: 77  IVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135
           +VR L K KR K A EV   ME   +    ++  Y   +D ++K      A    +N+  
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIA--YNTMIDGLAKAGHAQEALKVLDNMLA 288

Query: 136 KMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           K   P   T   L++S  +      AE L   M+  GF    + Y  +++ +  +G++ +
Sbjct: 289 KACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348

Query: 194 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +  E+ +    PDV+T+ + +       + E A K+F E+ +    P+ ++Y+T+  
Sbjct: 349 ACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQ 408

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+     A   +K M    C  + V Y  LL  +  +G  DE  ++  ++    +  
Sbjct: 409 GLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSP 468

Query: 313 NDAEYTCVISSLVKLGEFEKA-ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           N   Y+ +++ L   G  EK  ++++++ ++ + T DP +   ++       +L+ A   
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 372 YNRLVTKGIKPCYTTWELLT-----------------------WGYL------------- 395
           + R+V++G KP  TT+ +L                         GYL             
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588

Query: 396 -KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHV 453
            K G++++ ++  ++A  S R W  D    TA    L  QG +D A  L   + R  G  
Sbjct: 589 CKIGEVDRAVKMLEEA--SSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 454 STEIYNSLLRTYAKAGKM 471
               Y  ++    K  K+
Sbjct: 647 DAAAYCCIINGLIKVKKL 664



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-AACASQNDKETAEKAFL---ELKKTKIDP 242
            G+LD+  ++ Q +  +   PD  TYN+ +   C S+ ++   E+AF    +L+K    P
Sbjct: 519 TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENR--VERAFALLHDLEKVGYLP 576

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D ++Y+ L     K+   ++A   L+E   R    + VAY++L +     G  D  + ++
Sbjct: 577 DAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLF 636

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYI 360
           ++M+      + A Y C+I+ L+K+ + E A   +DE   I     P V     L+ A  
Sbjct: 637 QEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM--IGKGQKPTVATYTALVQALC 694

Query: 361 NRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           +   ++ A   +  ++ +G +      ++ L  G+ K  +++  L+ F+  I   R  VP
Sbjct: 695 HAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMIS--RGNVP 752

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HVST 455
                 + ++ L   G  + A+ LL  +   G   H +T
Sbjct: 753 TAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/400 (19%), Positives = 149/400 (37%), Gaps = 15/400 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
           LR LK    A+    W   Q   +     Y   ++L+   +  S      E +      P
Sbjct: 93  LRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAP 152

Query: 141 DTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH----MLNLYISNGQLDKV 194
           +T S   L+ S+ + +++ +A    E M      +C  P  H    +++     G  +K 
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKR---KRCK-PDLHTFLILVDCLCKAGMDEKA 208

Query: 195 PQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
            ++  E+       PD   +   +         + A + F +++K    PD I+Y+T+  
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMID 268

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K    ++A   L  M  + C    V Y  L++     G  +    +++ M +   + 
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   YT +I    K G  ++A +++DE        D     +++         E A   +
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSF 388

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             ++  G KP   T+  +  G  K G++       K  I       PD        +   
Sbjct: 389 EEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMI--AHGCFPDSVTYICLLDGFC 446

Query: 433 EQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           + G +D A  LL  L + +   + ++Y+SL+      G +
Sbjct: 447 KLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSV 486


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 11/404 (2%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECG 170
           HL  + +   L     F EN+      PD   C+ L+  + +  K+ +A  ++E +   G
Sbjct: 108 HLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSG 167

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
            +   + YN M++ Y   G+++    +L  +  + SPDVVTYN  L +       + A +
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM--SVSPDVVTYNTILRSLCDSGKLKQAME 225

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               + +    PD I+Y+ L     +      A   L EM  R C  + V Y+ L++   
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE ++    M S   + N   +  ++ S+   G +  AE +  +      +    
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             NIL+     +  L  A     ++   G +P   ++  L  G+ K+ +M++ +E  ++ 
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           +   R   PD          L + G ++ A  +L  L + G     I YN+++   AKAG
Sbjct: 406 VS--RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 470 KM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           K    + +++ M+  +++ D  T   L   ++ E  V E    F
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 131/299 (43%), Gaps = 3/299 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ I K   L  A  F  ++P     P+  T + +L S     +  +AE L+  M 
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             GF    + +N ++N     G L +   +L+++ ++   P+ ++YN  L     +   +
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +    +      PD ++Y+T+ +   K    E A   L ++  + C    + Y++++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   + +++  +M +   K +   Y+ ++  L + G+ ++A   + E+E +   
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR 516

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            +    N ++       Q + A  F   ++ +G KP  T++ +L  G   +G  ++ LE
Sbjct: 517 PNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A +  E +P     P++ S   LLH + + KK   A   +E+M   G     + YN 
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ML     +G+++   ++L +L  K  SP ++TYN  +   A       A K   E++   
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+YS+L     +    ++A     E E+   R N V ++S++         D  +
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
                M++   K N+  YT +I  L   G  ++A  + +E 
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALL 147
           A+++ E M  Q+  +  S  Y   L    K + +  A  + E +  +   PD  T + +L
Sbjct: 363 AIDILEKMP-QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTS 206
            +  ++ K  +A  ++ ++S  G     + YN +++     G+  K  ++L E++ K+  
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLK 481

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TY+  +   + +   + A K F E ++  I P+ ++++++     K    ++A   
Sbjct: 482 PDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDF 541

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           L  M  R C+ N  +Y+ L+      G   E L +  ++
Sbjct: 542 LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 163/380 (42%), Gaps = 14/380 (3%)

Query: 143 CSALLHSYV-------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           C+  +H+Y        +NKK  +A ALMEK++  G       YN +LN     G+L++  
Sbjct: 161 CTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 220

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+++  N  +PDVVTY   +     +     A K F E+    +  D + Y+ L    
Sbjct: 221 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGL 280

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           ++     +A++  K M  + C  + V  S+++      G     +RI+K M +     N+
Sbjct: 281 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 340

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y+ +I  L K  + + A  +  + +    T D    NIL+        +E A +F++ 
Sbjct: 341 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 400

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           ++  G KP   T+ +L  G+ K G  +     F     S     P+        + L ++
Sbjct: 401 MLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM--SSSHCSPNVVTYGTLISGLCKR 458

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNV-QMDAET 490
             +  A      ++  G    + +Y+SL+    K+GK+    ++ + M++  V      T
Sbjct: 459 RQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRT 518

Query: 491 QKVLKITSEMPVSEVSSIFS 510
           + +  +     V E  S+F+
Sbjct: 519 RLIFHLCKANRVDEAVSLFN 538



 Score = 38.5 bits (88), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 28/248 (11%)

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           T   PD  +++ L + Y     PE+A   ++EME+         Y    SL T+    + 
Sbjct: 88  TTFLPDVETWNVLITGYCLAREPEEAFAVIREMEED--------YGVAPSLKTH----NL 135

Query: 298 VLRIWKKMMSLFAKMNDAEYT----CVI-----SSLVK-LGEFEKAENIYDEWESISGTG 347
           VL    K   + A M+  E T    C I     +++V  L + +K ++     E I+  G
Sbjct: 136 VLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANG 195

Query: 348 -DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             P +   N LL       +LE A     ++V  G  P   T+  L  G  K+ +  +  
Sbjct: 196 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 255

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLR 463
           + FK+   ++R  V D    TA    L + G I  A  +  T+ + G V   +  ++++ 
Sbjct: 256 KLFKEM--ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 313

Query: 464 TYAKAGKM 471
              KAG++
Sbjct: 314 GLCKAGRI 321


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 158/349 (45%), Gaps = 12/349 (3%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           A LH  + +  SA A AL   +       C   +N ML    + G+  +  ++L+++ + 
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR- 144

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKA 263
             P+ VTYN  +A   ++   + A +   E++ +  I PD  +Y+TL S + K+   E A
Sbjct: 145 --PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 264 ATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    EM  +     + V Y++L+  Y + G  D  L+  + M+     M  A Y  ++ 
Sbjct: 203 AKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVH 262

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L   G    A  + +E +    + D    NIL+  Y      + A   +  +  KG++ 
Sbjct: 263 ALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRA 322

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAE 441
              T+  L + + +KGQ+++    FK A   V+K + PD  +  A  N     GD++ A 
Sbjct: 323 TAVTYTSLIYAFSRKGQVQETDRLFKVA---VKKGIRPDVVMYNALINSHCAGGDMERAF 379

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMD 487
            ++  +        ++ YN+L+R +   G++     +++ M K  +Q D
Sbjct: 380 EIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPD 428



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 11/244 (4%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y   G+LD   Q  +++ ++  +  V TYNL + A         A     E++
Sbjct: 222 YNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQ 281

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  + PD  +Y+ L + Y K    +KA    +EM ++  R   V Y+SL+  ++  G   
Sbjct: 282 RNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQ 341

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  R++K  +    + +   Y  +I+S    G+ E+A  I  E E      D    N L+
Sbjct: 342 ETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLI 401

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             +    +L+ A    + +  +GI+P          G  K GQ +      K+ +G  + 
Sbjct: 402 RGFCLLGRLDEARGLIDEMTKRGIQP--------DLGLCKNGQGDDAENLMKEMVG--KG 451

Query: 417 WVPD 420
             PD
Sbjct: 452 ITPD 455


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 4/333 (1%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +TC+ +L  +++  ++  A  L  +M           +N M+N+    G+L K  + +  
Sbjct: 182 ETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGH 241

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++     P+VVTYN  +     +   + A   F  +K   ++PD  +Y++  S   K   
Sbjct: 242 METLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGR 301

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E+A+  + +M +     N V Y++L+  Y N G  D+      +M+S     +   Y  
Sbjct: 302 LEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNL 361

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
            I +L   G    A+N+  E        D    NIL+  Y      + A    + +V KG
Sbjct: 362 FIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKG 421

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I+P   T+  L +   K+ +M++    F K        +PD  +  A  +     G+ID 
Sbjct: 422 IQPTLVTYTSLIYVLGKRNRMKEADALFSKI--QQEGLLPDIIVFNALIDGHCANGNIDR 479

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           A  LL  + N   +  EI YN+L++ Y + GK+
Sbjct: 480 AFQLLKEMDNMKVLPDEITYNTLMQGYCREGKV 512



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/410 (20%), Positives = 164/410 (40%), Gaps = 45/410 (10%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRG-LSSAENF 129
           Y  N ++  L K  + K A E    ME L     +V+ +  +H   +   RG    A   
Sbjct: 217 YTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCL---RGKFQRARVI 273

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           F+ + DK   PD  T ++ +    +  +  EA  L+ KM E G +   + YN +++ Y +
Sbjct: 274 FQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCN 333

Query: 188 NGQLDKV-----------------------------------PQMLQELK-KNTSPDVVT 211
            G LDK                                      M++E++ K   PD VT
Sbjct: 334 KGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVT 393

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           +N+ +       D + A     E+    I P  ++Y++L  +  K    ++A     +++
Sbjct: 394 HNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQ 453

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           +     + + +++L+  +   G  D   ++ K+M ++    ++  Y  ++    + G+ E
Sbjct: 454 QEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVE 513

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           +A  + DE +      D    N L++ Y  R  ++ A    + ++T G  P   T+  L 
Sbjct: 514 EARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALI 573

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
            G  K  + E   E  K+ +   +   PD     +    +E   D++G +
Sbjct: 574 QGLCKNQEGEHAEELLKEMVS--KGITPDDSTYLSIIEAMETVDDLEGND 621



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 7/263 (2%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           + ++L + A         A + F  +K+    P+  + + + SL++K+   + A     E
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +   R +   ++ ++++    G   +       M +L  K N   Y  +I      G+
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           F++A  I+   +      D    N  ++      +LE A     +++  G+ P   T+  
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNA 326

Query: 390 LTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           L  GY  KG ++K      + I  G +   V  +  I A +     +G +  A++++  +
Sbjct: 327 LIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF----MEGRMGDADNMIKEM 382

Query: 448 RNAGHVSTEI-YNSLLRTYAKAG 469
           R  G +   + +N L+  Y + G
Sbjct: 383 REKGMMPDAVTHNILINGYCRCG 405



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 118/269 (43%), Gaps = 12/269 (4%)

Query: 233 LELKKTKIDPDW-ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           L L + ++D    + +  L   Y +++ P +A      ++++    N    + +LSL+  
Sbjct: 134 LALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLK 193

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
           +        ++ +M  +  + +   +  +I+ L K G+ +KA+      E++    +   
Sbjct: 194 LNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVT 253

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKV--LECFK 408
            N ++  +  R + + A   +  +  KG++P CY T+     G  K+G++E+   L C  
Sbjct: 254 YNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCY-TYNSFISGLCKEGRLEEASGLICKM 312

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
              G V   V  + LI    NK    GD+D A      + + G +++ + YN  +     
Sbjct: 313 LEGGLVPNAVTYNALIDGYCNK----GDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 468 AGKMPLI--IVERMQKDNVQMDAETQKVL 494
            G+M     +++ M++  +  DA T  +L
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNIL 397


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 198/457 (43%), Gaps = 58/457 (12%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           +++G   + +  N ++  L ++ R   ALE+ + ME    +K  +  Y V +D   K   
Sbjct: 392 RDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME-SLGVKPTAYTYIVFIDYYGKSGD 450

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             SA   FE +  K   P+   C+A L+S  +  +  EA+ +   + + G +   + YN 
Sbjct: 451 SVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNM 510

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           M+  Y   G++D+  ++L E+ +N   PDV+  N  +      +  + A K F+ +K+ K
Sbjct: 511 MMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 570

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV- 298
           + P  ++Y+TL +   K    ++A    + M ++ C  N + +++L          DEV 
Sbjct: 571 LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK---NDEVT 627

Query: 299 --LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE------------------------- 331
             L++  KMM +    +   Y  +I  LVK G+ +                         
Sbjct: 628 LALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLP 687

Query: 332 ---KAENIYDEWESISG---TGDPRVPNI----LLAAYINRNQLEMAESFYNRLVTKGIK 381
              KA  I D ++ I+    +   +  N+    L+ + +    ++ A SF  RLV  GI 
Sbjct: 688 GVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGI- 746

Query: 382 PCYTTWELL------TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            C     +L      ++ +        + E F K +G V+  +P + L+      L E  
Sbjct: 747 -CRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLG-VQPKLPTYNLLIGG---LLEAD 801

Query: 436 DIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
            I+ A+ + + ++N G +     YN LL  Y K+GK+
Sbjct: 802 MIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKI 838



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 7/267 (2%)

Query: 207  PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
            P + TYNL +      +  E A+  FL++K T   PD  +Y+ L   Y K    ++    
Sbjct: 785  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 267  LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--LFAKMNDAEYTCVISSL 324
             KEM    C  N + ++ ++S     G  D+ L ++  +MS   F+      Y  +I  L
Sbjct: 845  YKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP-TACTYGPLIDGL 903

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
             K G   +A+ +++         +  + NIL+  +    + + A + + R+V +G++P  
Sbjct: 904  SKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 963

Query: 385  TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             T+ +L       G++++ L  F++   S     PD        N L +   ++ A  L 
Sbjct: 964  KTYSVLVDCLCMVGRVDEGLHYFRELKES--GLNPDVVCYNLIINGLGKFHRLEEALVLF 1021

Query: 445  VTLRNAGHVSTEI--YNSLLRTYAKAG 469
              ++ +  ++ ++  YNSL+     AG
Sbjct: 1022 NEMKKSRGITPDLYTYNSLILNLGIAG 1048



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 102/503 (20%), Positives = 194/503 (38%), Gaps = 79/503 (15%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL---- 99
           + LS+    R A   +RK +E G  ++ Y  N ++  L K +    A+EV   M L    
Sbjct: 163 KCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFR 222

Query: 100 ---------------QYDIKLVSG---------------DYAVHLDLISKIRGLSSAENF 129
                          + DI+ V G                + + + ++ +   ++ A   
Sbjct: 223 PSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 282

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
            + + D+  GPD  T + L+ +    +K   A+ +  KM         + Y  +L+ +  
Sbjct: 283 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSD 342

Query: 188 NGQLDKVPQMLQELKKNTS-PDVVTYNLWL-AACASQNDKETAEKAFLELKKTKIDPDWI 245
           N  LD V Q   E++K+   PDVVT+ + + A C + N  E   K  + ++   I P+  
Sbjct: 343 NRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDV-MRDQGILPNLH 401

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+TL    +++   + A      ME    +     Y   +  Y   G     L  ++KM
Sbjct: 402 TYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 461

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
            +     N       + SL K G   +A+ I+   + I    D    N+++  Y    ++
Sbjct: 462 KTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEI 521

Query: 366 --------EMAES---------------------------FYNRLVTKGIKPCYTTWELL 390
                   EM E+                            + R+    +KP   T+  L
Sbjct: 522 DEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 581

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL-ITAAYNKLEEQGDIDGAEHLLVTLRN 449
             G  K G++++ +E F+   G V+K  P + +     ++ L +  ++  A  +L  + +
Sbjct: 582 LAGLGKNGKIQEAIELFE---GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 638

Query: 450 AGHVSTEI-YNSLLRTYAKAGKM 471
            G V     YN+++    K G++
Sbjct: 639 MGCVPDVFTYNTIIFGLVKNGQV 661



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 12/253 (4%)

Query: 236  KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K   + P   +Y+ L    ++ ++ E A     +++   C  +   Y+ LL  Y   G  
Sbjct: 779  KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKI 838

Query: 296  DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---ISGTGDPRVP 352
            DE+  I+K+M +   + N   +  VIS LVK G  + A ++Y +  S    S T     P
Sbjct: 839  DELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 898

Query: 353  NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
              L+       +L  A+  +  +   G +P    + +L  G+ K G+ +     FK+ + 
Sbjct: 899  --LIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK 956

Query: 413  -SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
              VR   PD +  +   + L   G +D   H    L+ +G +     YN ++    K  +
Sbjct: 957  EGVR---PDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHR 1013

Query: 471  M--PLIIVERMQK 481
            +   L++   M+K
Sbjct: 1014 LEEALVLFNEMKK 1026



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 46/282 (16%)

Query: 120  IRGLSSAEN-------FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECG 170
            I GL  A N       +++ + D+   P  C+   L+    ++ +  EA+ L E MS+ G
Sbjct: 864  ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYG 923

Query: 171  FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
                   YN ++N +   G+ D    + + + K+   PD+ TY++ +         +   
Sbjct: 924  CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGL 983

Query: 230  KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-RTCRKNRVAYSSLLSL 288
              F ELK++ ++PD + Y+ + +   K    E+A     EM+K R    +   Y+SL+  
Sbjct: 984  HYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLI-- 1041

Query: 289  YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
              N+G                           I+ +V     E+A  IY+E +      +
Sbjct: 1042 -LNLG---------------------------IAGMV-----EEAGKIYNEIQRAGLEPN 1068

Query: 349  PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
                N L+  Y    + E A + Y  +VT G  P   T+E L
Sbjct: 1069 VFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 4/237 (1%)

Query: 75   NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
            N ++  L K      AL++   +    D    +  Y   +D +SK   L  A+  FE + 
Sbjct: 861  NIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMS 920

Query: 135  DKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
            D    P+    + L++ + +  ++  A AL ++M + G       Y+ +++     G++D
Sbjct: 921  DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVD 980

Query: 193  KVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTL 250
            +     +ELK++  +PDVV YNL +      +  E A   F E+KK++ I PD  +Y++L
Sbjct: 981  EGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSL 1040

Query: 251  TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
                    + E+A     E+++     N   +++L+  Y+  G  +    +++ M++
Sbjct: 1041 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1097



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 152/367 (41%), Gaps = 13/367 (3%)

Query: 115  DLISKI---RGLSSAENFFENLPDKMRGPDTCSALL----HSYVQNKKSAEAEALMEKMS 167
            DL+  I    G+ +A +F E L       D  S L+    +S+  N  S  A  L EK +
Sbjct: 720  DLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASG-ARMLFEKFT 778

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDK 225
            +   ++  LP  ++L   +    + ++ Q +    KNT   PDV TYN  L A       
Sbjct: 779  KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKI 838

Query: 226  ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSS 284
            +   + + E+   + +P+ I+++ + S  +K    + A     + M  R        Y  
Sbjct: 839  DELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 898

Query: 285  LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
            L+   +  G   E  ++++ M     + N A Y  +I+   K GE + A  ++       
Sbjct: 899  LIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 958

Query: 345  GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
               D +  ++L+       +++    ++  L   G+ P    + L+  G  K  ++E+ L
Sbjct: 959  VRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEAL 1018

Query: 405  ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
              F +   S R   PD     +    L   G ++ A  +   ++ AG   +   +N+L+R
Sbjct: 1019 VLFNEMKKS-RGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1077

Query: 464  TYAKAGK 470
             Y+ +GK
Sbjct: 1078 GYSLSGK 1084



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 119/294 (40%), Gaps = 11/294 (3%)

Query: 126  AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNH 180
            A++ F  + +    PD  T + LL +Y    KS + + L E   E    +C    + +N 
Sbjct: 806  AQDVFLQVKNTGCIPDVATYNFLLDAY---GKSGKIDELFEIYKEMSAHECEPNTITHNI 862

Query: 181  MLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +++  +  G +D    +  +L   ++ SP   TY   +   +       A++ F  +   
Sbjct: 863  VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDY 922

Query: 239  KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
               P+   Y+ L + + K    + A    K M K   R +   YS L+     +G  DE 
Sbjct: 923  GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 982

Query: 299  LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLA 357
            L  ++++       +   Y  +I+ L K    E+A  +++E +   G T D    N L+ 
Sbjct: 983  LHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLIL 1042

Query: 358  AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
                   +E A   YN +   G++P   T+  L  GY   G+ E     ++  +
Sbjct: 1043 NLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1096


>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Cucumis sativus]
          Length = 668

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 175/380 (46%), Gaps = 30/380 (7%)

Query: 50  YAKRSAAITMRKWKEE--------GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
           Y +R +AI   K   E        G  +   +LN I+R    L R+K   ++ EWM  Q 
Sbjct: 74  YLERQSAIAQVKDCSELAPALARYGGLLKAQDLNVILRHFGMLSRWKDLSQLFEWM--QE 131

Query: 102 DIKLVSGDYAVHLDLISKIRGLS--SAENFFENLPDKM--RGPDTCSALLHSYVQNKKSA 157
             K     Y+ ++  +   RGL+   A   + N+ +         C+++L+  V+N K  
Sbjct: 132 TGKTNVSSYSSYIKFMG--RGLNPLKALEVYNNIEEVSIKNSIFICNSILNCLVRNGKFD 189

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLN--LYISNGQLDKVPQMLQELKKNT-SPDVVTYNL 214
            +  L  +M   G     + Y+ ML   + + +G   K  ++L+EL+ N    D V+Y  
Sbjct: 190 TSVKLFHQMKNDGLCPDTVTYSTMLTGCIRVKHG-YAKAMELLKELQDNGLCMDCVSYGT 248

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            +A CAS N  E AE+ F +++     P+   Y +L + Y      +KA   +++M+   
Sbjct: 249 LIAICASHNRLEDAERFFNQMRAEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTG 308

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
              N+V  ++LL +Y   G  ++  ++  ++ SL    N+  Y  ++  L K G   +A+
Sbjct: 309 LVPNKVILTTLLKVYVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAKAGSIREAK 368

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW-- 392
            ++DE ++ +   D    +I+++A+     LE A     +L+ K  +  Y  ++++    
Sbjct: 369 TVFDEMKAKNVKTDGYAHSIMISAFCRGGLLEEA-----KLLAKDFEATYDRYDIVILNT 423

Query: 393 ---GYLKKGQMEKVLECFKK 409
               Y + G+ME V++  +K
Sbjct: 424 MLCAYCRAGEMESVMQMLRK 443



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 127/283 (44%), Gaps = 11/283 (3%)

Query: 219 CASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP-EKAATTLKEMEKRTCR 276
           C  +N K +T+ K F ++K   + PD ++YST+ +  I+++    KA   LKE++     
Sbjct: 181 CLVRNGKFDTSVKLFHQMKNDGLCPDTVTYSTMLTGCIRVKHGYAKAMELLKELQDNGLC 240

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + V+Y +L+++  +    ++  R + +M +     N   Y  ++++    G+++KA+ +
Sbjct: 241 MDCVSYGTLIAICASHNRLEDAERFFNQMRAEGHSPNMFHYGSLLNAYSINGDYKKADEL 300

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            ++ +      +  +   LL  Y+     E +    + L + G       + LL  G  K
Sbjct: 301 IEDMKLTGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAK 360

Query: 397 KGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
            G + +    F +    +V+     H ++ +A+ +    G +     LL     A +   
Sbjct: 361 AGSIREAKTVFDEMKAKNVKTDGYAHSIMISAFCR----GGLLEEAKLLAKDFEATYDRY 416

Query: 456 EIY--NSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           +I   N++L  Y +AG+M  +  ++ +M    +  D  T  +L
Sbjct: 417 DIVILNTMLCAYCRAGEMESVMQMLRKMDDLAISPDYNTFHIL 459


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/440 (22%), Positives = 193/440 (43%), Gaps = 15/440 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA +   K ++EG + +    + ++   RK    + ALE  + ME+   + L    + VH
Sbjct: 357 SALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEV---LGLTPSVFHVH 413

Query: 114 LDLISKIRGLSSAEN---FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
             +   ++G    E    F E+    +     C+ +L    +  K+ EA  L+ KM   G
Sbjct: 414 TIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRG 473

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAE 229
                + YN+++  +     +D    +    L+K   P+  TY++ +  C   +D++ A 
Sbjct: 474 IGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL 533

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM--EKRTCRKNRVAYSSLLS 287
           +    +  + I+ + + Y T+ +   K+    KA   L  M  EKR C  + ++Y+S++ 
Sbjct: 534 EVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLC-VSCMSYNSIID 592

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            +   G  D  +  +++M       N   YT +++ L K    ++A  + DE ++     
Sbjct: 593 GFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKL 652

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D      L+  +  R+ +E A + ++ L+ +G+ P    +  L  G+   G M   L+ +
Sbjct: 653 DIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLY 712

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYA 466
           KK +    +   D    T   + L + G++  A  L   ++  G V  E IY  ++   +
Sbjct: 713 KKMLKDGLRC--DLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLS 770

Query: 467 KAGKMPLII--VERMQKDNV 484
           K G+   ++   E M+K+NV
Sbjct: 771 KKGQFVKVVKMFEEMKKNNV 790



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 158/353 (44%), Gaps = 7/353 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A I      E+G   + Y  + ++    +    ++ALEV   M    +I++    Y   +
Sbjct: 497 ARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMT-SSNIEVNGVVYQTII 555

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTC---SALLHSYVQNKKSAEAEALMEKMSECGF 171
           + + K+   S A     N+ ++ R   +C   ++++  + +  +   A A  E+M   G 
Sbjct: 556 NGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y  ++N    N ++D+  +M  E+K K    D+  Y   +     +++ E+A  
Sbjct: 616 SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASA 675

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F EL +  ++P    Y++L S +  +     A    K+M K   R +   Y++L+    
Sbjct: 676 LFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLL 735

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G       ++ +M ++    ++  YT +++ L K G+F K   +++E +  + T +  
Sbjct: 736 KDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVL 795

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           + N ++A +     L+ A   ++ ++ KGI P   T+++L  G +  G ++ V
Sbjct: 796 IYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQV--GNLQPV 846



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 1/230 (0%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +++ +   G++D      +E+  N  SP+V+TY   +      N  + A +   E
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDE 644

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K   +  D  +Y  L   + K    E A+    E+ +     ++  Y+SL+S + N+G 
Sbjct: 645 MKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGN 704

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
               L ++KKM+    + +   YT +I  L+K G    A  +Y E +++    D  +  +
Sbjct: 705 MVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTV 764

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           ++     + Q       +  +    + P    +  +  G+ ++G +++  
Sbjct: 765 IVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAF 814



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 142/332 (42%), Gaps = 8/332 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYISNGQLDKVPQMLQELKK- 203
           LL++Y +++++  A  ++ +M E   +    PY N  L+  +    L +  ++   +   
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPF-FPYVNRTLSALVQRNSLTEAKELYSRMVAI 227

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
               D VT  L + A   +     A +      +   +PD + YS       K      A
Sbjct: 228 GVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMA 287

Query: 264 ATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
            + L+EM EK+ C  ++  Y+S++      G  D+ +R+  +M+S    MN    T +I+
Sbjct: 288 NSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLIT 347

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K  +   A  ++D+ E    + +    ++L+  +    ++E A  FY ++   G+ P
Sbjct: 348 GHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTP 407

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
                  +  G+LK  + E+ L+ F +   S    + +  +     + L +QG  D A  
Sbjct: 408 SVFHVHTIIQGWLKGQKHEEALKLFDE---SFETGLANVFVCNTILSWLCKQGKTDEATE 464

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL 473
           LL  + + G     + YN+++  + +   M L
Sbjct: 465 LLSKMESRGIGPNVVSYNNVMLGHCRQKNMDL 496



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 163/392 (41%), Gaps = 45/392 (11%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           ++L+  + +N     A  L +KM + G     + ++ ++  +  NG+++K  +  ++++ 
Sbjct: 343 TSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEV 402

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              +P V   +  +         E A K F E  +T +   ++  +T+ S   K    ++
Sbjct: 403 LGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVC-NTILSWLCKQGKTDE 461

Query: 263 AATTLKEMEKRTCRKNRVAYSSLL-------------SLYTNM---GYK----------- 295
           A   L +ME R    N V+Y++++              +++N+   G K           
Sbjct: 462 ATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILID 521

Query: 296 ------DE--VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA-ENIYDEWESISGT 346
                 DE   L +   M S   ++N   Y  +I+ L K+G+  KA E + +  E     
Sbjct: 522 GCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLC 581

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                 N ++  +    +++ A + Y  +   GI P   T+  L  G  K  +M++ LE 
Sbjct: 582 VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEM 641

Query: 407 FKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             +     V+  +P +  +   + K   + +++ A  L   L   G + S  IYNSL+  
Sbjct: 642 RDEMKNKGVKLDIPAYGALIDGFCK---RSNMESASALFSELLEEGLNPSQPIYNSLISG 698

Query: 465 YAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           +   G M   L + ++M KD ++ D  T   L
Sbjct: 699 FRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 730



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 112 VHLDLISKIRGLS---SAENFFEN-LPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKM 166
           ++  LIS  R L    +A + ++  L D +R    T + L+   +++     A  L  +M
Sbjct: 691 IYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEM 750

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDK 225
              G +   + Y  ++N     GQ  KV +M +E+KKN  +P+V+ YN  +A    + + 
Sbjct: 751 QAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNL 810

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           + A +   E+    I PD  ++  L S  +    P +AA+
Sbjct: 811 DEAFRLHDEMLDKGILPDGATFDILVSGQVGNLQPVRAAS 850


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 150/332 (45%), Gaps = 9/332 (2%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQEL 201
           LL  + + K++ EA + L+ +  E G +     Y+ +L        +GQ D + +M+ E 
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SP+VV YN  +     + D   A   F E+ +  I PD ++Y+++     K    +
Sbjct: 225 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 284

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   L++M  +    N   Y++L+  Y++ G   E +R++K+M       +    + ++
Sbjct: 285 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 344

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            SL K G+ ++A +++D         D    NI+L  Y  +  L      ++ ++  GI 
Sbjct: 345 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 404

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P + T+ +L   Y   G ++K +  F +     V+  V  +R + AA  ++   G +D A
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI---GKMDDA 461

Query: 441 EHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
                 + + G    +  YN L++ +   G +
Sbjct: 462 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 493



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T S L+ S  +  K  EA  + + M+  G       YN MLN Y + G L 
Sbjct: 334 LPDVV----TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 389

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +PD  T+N+ + A A+    + A   F E++   + PD ++Y T+ 
Sbjct: 390 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 449

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY+ L+  +   G   +   +  ++M+    
Sbjct: 450 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMH 509

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++    D  V ++L+  Y    ++E A   
Sbjct: 510 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 569

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 570 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 609



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 139/349 (39%), Gaps = 6/349 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + D    PD  +   ++ +  +  K  +A     +M + G       YN 
Sbjct: 423 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K  +++ E+  N    D+V ++  +           A+  F       
Sbjct: 483 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD + YS L   Y  +   EKA      M       N V Y +L++ Y  +G  DE L
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++M+    K +   Y+ +I  L + G    A+  + E        D    NI+L   
Sbjct: 603 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 662

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                 + A   +  L    +K    T   +  G  +  ++E+  + F     S  + VP
Sbjct: 663 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASI--SRSRLVP 720

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
           +    +     L ++G ++ AE +  +++NAG   ++ + N ++R   K
Sbjct: 721 NVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLK 769


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 156/362 (43%), Gaps = 6/362 (1%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YD 102
           RL    Y   +A I  R++ E G   +    N ++  + +L R K A  +   MEL+ Y 
Sbjct: 219 RLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYT 278

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAE 160
             ++S  Y+  ++   +   L       E +  K   P++    +++    +  K AEAE
Sbjct: 279 PDVIS--YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAAC 219
               +M   G L   + Y  +++ +   G +    +   E+  ++ +PDV+TY   ++  
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
               D   A K F E+    ++PD ++++ L + Y K    + A      M +  C  N 
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++L+      G  D    +  +M  +  + N   Y  +++ L K G  E+A  +  E
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           +E+     D      L+ AY    +++ A+     ++ KG++P   T+ +L  G+   G 
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576

Query: 400 ME 401
           +E
Sbjct: 577 LE 578



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 5/307 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   + +A  FF  +  +   PD  T +A++  + Q     EA  L  +M 
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413

Query: 168 ECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
             G     + +  ++N Y   G + D        ++   SP+VVTY   +     + D +
Sbjct: 414 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 473

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +A +   E+ K  + P+  +Y+++ +   K    E+A   + E E      + V Y++L+
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G  D+   I K+M+    +     +  +++     G  E  E + + W    G 
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN-WMLAKGI 592

Query: 347 G-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +    N L+  Y  RN L+ A + Y  + ++G+ P   T+E L  G+ K   M++   
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 652

Query: 406 CFKKAIG 412
            F++  G
Sbjct: 653 LFQEMKG 659



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 123/303 (40%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +    +I  +  A   F  +  K   PD  T + L++ Y +     +A  +   M 
Sbjct: 389 YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           + G     + Y  +++     G LD   ++L E+ K    P++ TYN  +       + E
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 508

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   E +   ++ D ++Y+TL   Y K    +KA   LKEM  +  +   V ++ L+
Sbjct: 509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 568

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +   G  ++  ++   M++     N   +  ++         + A  IY +  S    
Sbjct: 569 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 628

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D +    L+  +     ++ A   +  +  KG     +T+ +L  G+LK+ +  +  E 
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688

Query: 407 FKK 409
           F +
Sbjct: 689 FDQ 691


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 165/395 (41%), Gaps = 40/395 (10%)

Query: 141 DTCSALLHSYV-------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           + C+  +H+Y        +NKK  EA ALMEK++  G       YN +LN     G+L++
Sbjct: 28  NGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 87

Query: 194 VPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L+++  N  +PDVVTY   +     +     A K F E+    +  D + Y+ L  
Sbjct: 88  AIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIR 147

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
             ++     +A++  K M  + C  + V  S+++      G     +RI+K M +     
Sbjct: 148 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 207

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N+  Y+ +I  L K  + + A  +  + +    T D    NIL+        +  A +F+
Sbjct: 208 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFF 267

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK-----------AIGSVRKWVPDH 421
           + ++  G KP   T+ +L  G+ K G  +     F               G++   +   
Sbjct: 268 DEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKR 327

Query: 422 RLITAA---YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIV 476
           R +T A   Y  ++E+G                   + +Y+SL+    K+GK+    ++ 
Sbjct: 328 RQLTKASLYYQHMKERG---------------CPPDSFVYSSLVDGLCKSGKLEGGCMLF 372

Query: 477 ERMQKDNV-QMDAETQKVLKITSEMPVSEVSSIFS 510
           + M++  V      T+ +  +     V E  S+F+
Sbjct: 373 DEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFN 407



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 164/412 (39%), Gaps = 13/412 (3%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G T+  +    IV  L K K+ + A+ + E +        ++  Y   L+ + K+  L  
Sbjct: 29  GCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIA-TYNALLNGLCKMGRLEE 87

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A +    + D    PD  T ++L+    + K+S EA  L ++M+  G     + Y  ++ 
Sbjct: 88  AIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIR 147

Query: 184 LYISNGQLDKVPQMLQELKKNTS----PDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
             +  G   K+PQ     K  TS    PDVVT +  +           A + F  ++   
Sbjct: 148 GLLQAG---KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 204

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + P+ + YS L     K    + A   L +M+K  C  + + Y+ L+      G      
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAAR 264

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
             + +M+    K +   Y  +IS   K G  + A  ++D+  S   + +      L++  
Sbjct: 265 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGL 324

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
             R QL  A  +Y  +  +G  P    +  L  G  K G++E     F +     R  V 
Sbjct: 325 CKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM---ERSGVA 381

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           + +  T     L +   +D A  L   +R  G      YNS++    K+GK+
Sbjct: 382 NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKV 433



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 108/262 (41%), Gaps = 36/262 (13%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   + +A   F+++  +   P+    SAL+H   + +K   A  ++ +M +   
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + YN +++    +G +        E L+    PDV TYN+ ++      + + A  
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F ++  ++  P+ ++Y TL S   K     KA+   + M++R C  +   YSSL+    
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLC 360

Query: 291 NMGYKDEVLRIWKKM---------------------------MSLFAKM------NDAEY 317
             G  +    ++ +M                           +SLF  +      +   Y
Sbjct: 361 KSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAY 420

Query: 318 TCVISSLVKLGEFEKAENIYDE 339
             +IS+L+K G+  + + +Y E
Sbjct: 421 NSIISALIKSGKVNEGQAVYQE 442


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 150/332 (45%), Gaps = 9/332 (2%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQEL 201
           LL  + + K++ EA + L+ +  E G +     Y+ +L        +GQ D + +M+ E 
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SP+VV YN  +     + D   A   F E+ +  I PD ++Y+++     K    +
Sbjct: 215 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 274

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   L++M  +    N   Y++L+  Y++ G   E +R++K+M       +    + ++
Sbjct: 275 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 334

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            SL K G+ ++A +++D         D    NI+L  Y  +  L      ++ ++  GI 
Sbjct: 335 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 394

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P + T+ +L   Y   G ++K +  F +     V+  V  +R + AA  ++   G +D A
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI---GKMDDA 451

Query: 441 EHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
                 + + G    +  YN L++ +   G +
Sbjct: 452 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 483



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 156/338 (46%), Gaps = 10/338 (2%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T S L+ S  +  K  EA  + + M+  G       YN MLN Y + G L 
Sbjct: 324 LPDVV----TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 379

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +PD  T+N+ + A A+    + A   F E++   + PD ++Y T+ 
Sbjct: 380 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 439

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY+ L+  +   G   +   +  ++M+    
Sbjct: 440 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMH 499

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++    D  V N+L+  Y    ++E A   
Sbjct: 500 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 559

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +   R   P   L +   + L
Sbjct: 560 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ--RGIKPSTILYSIIIDGL 617

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAK 467
            E G    A+     +  +G ++ +I  YN +LR   K
Sbjct: 618 FEAGRTVPAKMKFHEMTESG-IAMDICTYNIVLRGLFK 654



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 138/349 (39%), Gaps = 6/349 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + D    PD  +   ++ +  +  K  +A     +M + G       YN 
Sbjct: 413 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K  +++ E+  N    D+V ++  +           A+  F       
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD + Y+ L   Y  +   EKA      M       N V Y +L++ Y  +G  DE L
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++M+    K +   Y+ +I  L + G    A+  + E        D    NI+L   
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                 + A   +  L    +K    T   +  G  +  ++E+  + F     S  + VP
Sbjct: 653 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASI--SRSRLVP 710

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
                +     L ++G ++ AE +  +++NAG   ++ + N ++R   K
Sbjct: 711 SVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLK 759


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 18/360 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A LH  +    SA A AL   M       C   +N ML    S G+  +  ++L+++ +
Sbjct: 10  TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 69

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEK 262
              P+ VTYN  +A   S+   + A     E++ +  I P+  +Y T+ S + K+   ++
Sbjct: 70  ---PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 126

Query: 263 AATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           A     EM  K   +   V Y++L+  Y + G  D  L    +M+     M  A Y  ++
Sbjct: 127 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 186

Query: 322 SSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +L   G   +A   Y+  E + G G   D    NIL+  +     ++ A   +  +  +
Sbjct: 187 HALFMDGRGTEA---YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 243

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDI 437
           G++    T+  L +   KKGQ+++  + F +A   VR+ + PD  L  A  N     G+I
Sbjct: 244 GVRATVVTYTSLIYALSKKGQVQETDKLFDEA---VRRGIRPDLVLYNALINSHSTSGNI 300

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           D A  ++  +        ++ YN+L+R     G++     +++ M K  +Q D  T   L
Sbjct: 301 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 360



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 1/257 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           +AL+  Y    K   A    ++M E G       YN +++    +G+  +  ++++E+  
Sbjct: 148 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 207

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K  +PDV TYN+ +     + + + A + F  + +  +    ++Y++L     K    ++
Sbjct: 208 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQE 267

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                 E  +R  R + V Y++L++ ++  G  D    I  +M       +D  Y  ++ 
Sbjct: 268 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 327

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L  LG  ++A  + DE        D    N L++ Y  +  ++ A    N ++ KG  P
Sbjct: 328 GLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 387

Query: 383 CYTTWELLTWGYLKKGQ 399
              T+  L  G  K GQ
Sbjct: 388 TLLTYNALIQGLCKNGQ 404



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 1/253 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+   + +  EA  L+E+M   G       YN ++N +   G + K  ++ + +
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 240

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++     VVTY   + A + +   +  +K F E  +  I PD + Y+ L + +      
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 300

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   + EMEK+    + V Y++L+     +G  DE  ++  +M     + +   Y  +
Sbjct: 301 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 360

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS     G+ + A  I +E  +          N L+       Q + AE+    +V  GI
Sbjct: 361 ISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 420

Query: 381 KPCYTTWELLTWG 393
            P  +T+  L  G
Sbjct: 421 TPDDSTYISLIEG 433



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+++  +  +  E + L ++    G     + YN ++N + ++G +D+  +++ E+
Sbjct: 251 TYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 310

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK  +PD VTYN  +         + A K   E+ K  I PD ++Y+TL S Y      
Sbjct: 311 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 370

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++L+      G  D+   + K+M+      +D+ Y  +
Sbjct: 371 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 430

Query: 321 ISSL 324
           I  L
Sbjct: 431 IEGL 434


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 150/332 (45%), Gaps = 9/332 (2%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQEL 201
           LL  + + K++ EA + L+ +  E G +     Y+ +L        +GQ D + +M+ E 
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SP+VV YN  +     + D   A   F E+ +  I PD ++Y+++     K    +
Sbjct: 212 GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 271

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   L++M  +    N   Y++L+  Y++ G   E +R++K+M       +    + ++
Sbjct: 272 KAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLM 331

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            SL K G+ ++A +++D         D    NI+L  Y  +  L      ++ ++  GI 
Sbjct: 332 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 391

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P + T+ +L   Y   G ++K +  F +     V+  V  +R + AA  ++   G +D A
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRI---GKMDDA 448

Query: 441 EHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
                 + + G    +  YN L++ +   G +
Sbjct: 449 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 480



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T S L+ S  +  K  EA  + + M+  G       YN MLN Y + G L 
Sbjct: 321 LPDVV----TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 376

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +PD  T+N+ + A A+    + A   F E++   + PD ++Y T+ 
Sbjct: 377 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 436

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY+ L+  +   G   +   +  ++M+    
Sbjct: 437 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMH 496

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++    D  V ++L+  Y    ++E A   
Sbjct: 497 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 556

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 557 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 138/349 (39%), Gaps = 6/349 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + D    PD  +   ++ +  +  K  +A     +M + G       YN 
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K  +++ E+  N    D+V ++  +           A+  F       
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD + YS L   Y  +   EKA      M       N V Y +L++ Y  +G  DE L
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++M+    K +   Y+ +I  L + G    A+  + E        D    NI+L   
Sbjct: 590 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGL 649

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                 + A   +  L    +K    T   +  G  +  ++E+  + F     S  + VP
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASI--SRSRLVP 707

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
                +     L ++G ++ AE +  +++NAG   ++ + N ++R   K
Sbjct: 708 SVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLK 756


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 14/355 (3%)

Query: 123 LSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           L  A  FFE+L  K RG   C    +ALL  + +     EA  ++++M + G     + Y
Sbjct: 176 LDQAVAFFEDL--KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 233

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +   Y   G  ++  + L  +  K   P+  TYN  + A A+    + A   F  +KK
Sbjct: 234 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 293

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+  +Y+ +  +  K          L+EM +  C  NRV ++++L++    G +D 
Sbjct: 294 NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDY 353

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V R+   M S   +++   Y  +IS+  + G    A  +YDE  S   T      N LL 
Sbjct: 354 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 413

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSV-R 415
               +     A+S  ++++  G KP   ++ LL   Y K G    +    K+  +G++  
Sbjct: 414 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 473

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
            WV    L+ A +        ++G E     ++  G+     I+NS+L  YAK G
Sbjct: 474 SWVILRTLVIANFKCRR----LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 524



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 159/404 (39%), Gaps = 47/404 (11%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-------SALLHSYVQNKKSAEAEALM 163
           A  L+++ +  G     +   +L D+M  P          + +LH+  +  +   A  L 
Sbjct: 53  AAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLF 112

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
            ++   G +   + YN +L++Y   G+   ++  +L+E++     PD  T +  +AAC  
Sbjct: 113 AELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGR 172

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A   F +LK     P  ++Y+ L  ++ K     +A   LKEME   C+ + V 
Sbjct: 173 DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVT 232

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD--- 338
           Y+ L   Y   G+ +E  +    M S     N   Y  V+++   +G  ++A  ++D   
Sbjct: 233 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 292

Query: 339 -------------------------------EWESISGTGDPRVP-NILLAAYINRNQLE 366
                                          E  S SG    RV  N +LA    R   +
Sbjct: 293 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 352

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                 N + + G++    T+  L   Y + G      + + + I S   + P      A
Sbjct: 353 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYNA 410

Query: 427 AYNKLEEQGDIDGAEHLLV-TLRNAGHVSTEIYNSLLRTYAKAG 469
             N L  QGD   A+ ++   L+N    + + Y+ LL+ YAK G
Sbjct: 411 LLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 454



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 1/255 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ +Y +      A  + ++M   GF  C   YN +LN+    G       ++ +
Sbjct: 371 DTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSK 430

Query: 201 LKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + KN   P+  +Y+L L   A   +    E    E+    I P W+   TL     K   
Sbjct: 431 MLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 490

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E      +E++ +  + + V ++S+L++Y   G   +   ++  +       +   Y  
Sbjct: 491 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 550

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    K  E  +AE I  + +S     D    N ++  +  +  ++ A+   + ++  G
Sbjct: 551 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 610

Query: 380 IKPCYTTWELLTWGY 394
           + PC  T+  L  GY
Sbjct: 611 MAPCVVTYHTLVGGY 625



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 11/270 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL+   +    + A++++ KM + GF      Y+ +L  Y   G    +  + +E+
Sbjct: 407 TYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEV 466

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
              T  P  V     + A       E  EKAF E+K     PD + ++++ ++Y K  L 
Sbjct: 467 YVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLY 526

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA      +++     + + Y+SL+ +Y       E  +I K++ S   K +   Y  V
Sbjct: 527 SKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 586

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I+   K G  ++A+ I  E        D   P +     L+  Y +      A    N +
Sbjct: 587 INGFCKQGLIKEAQRILSEM-----IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 641

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +   +KP   T+  +   Y K  + ++  E
Sbjct: 642 IHHNLKPMELTYRRVVDSYCKAKRYDEARE 671



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F+ +  +   PD    +++L  Y +N   ++A  + + + + G     +
Sbjct: 487 KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 546

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN ++++Y  + +  +  ++L++LK +   PDVV+YN  +     Q   + A++   E+
Sbjct: 547 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 606

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P  ++Y TL   Y  +E+  +A   +  M     +   + Y  ++  Y      
Sbjct: 607 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRY 666

Query: 296 DE 297
           DE
Sbjct: 667 DE 668


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 169/390 (43%), Gaps = 15/390 (3%)

Query: 96  WMELQYDI--KLVSGDYAVHL-------DLISKIRGLSSAENFFENLPDKMRGPD--TCS 144
           W++L ++I  ++V G   +++       + + K R   +   F  ++  K    D  T +
Sbjct: 237 WVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYN 296

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKK 203
            L+++Y +     EA  L+   S  G     L YN +L      G+ D+   +L E L+ 
Sbjct: 297 TLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL 356

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             +P+  TYN  L     +++   A++ F E+ +  + PD +S+S+L  +  +     +A
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               +EME+     + V Y+ L+  +   G   + L++  +M++    M+   Y   ++ 
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L K   F  A+ +++E        D      L+  Y     ++ A + +  +V   +KP 
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             T+  L  G+ K G+M +  E +   I   +  +PDH       N     G +  A +L
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIR--KDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 444 LVTLRNAGHVSTEIY-NSLLRTYAKAGKMP 472
              +   G     +  N+L++ Y ++G MP
Sbjct: 595 CDQMLEKGIRPNLVTCNTLIKGYCRSGDMP 624



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 3/283 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +  L+   + K  A+A+ L  +M E G +     +  ++  Y  +G +DK   + + +
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            + N  PD VTYN  +       +   A++ + ++ +  I PD ISY T+ + +    L 
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLL 588

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     +M ++  R N V  ++L+  Y   G   +      KM+S     +   Y  +
Sbjct: 589 PEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTL 648

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I   +K    EKA  + +E E      +    N++L  +    +++ AE    +++  GI
Sbjct: 649 IDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGI 708

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
            P   T+  L  G++ +  M++      + +   R  VPD R 
Sbjct: 709 NPDGATYSSLINGHVSQDNMKEAFRFHDEMLQ--RGLVPDDRF 749



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A N FE +      PD  T + L+  + +  +   A+ L + M     +   + Y  
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 181 MLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +LN + S+G L +   +  Q L+K   P++VT N  +       D   A +   ++    
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD  SY+TL   Y+K    EKA   + EMEKR  + N + Y+ +L+ +   G   E  
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           ++ +KM+ +    + A Y+ +I+  V     ++A   +DE
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDE 737



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 144/347 (41%), Gaps = 27/347 (7%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM----- 166
           +HL L  K  GL S      + P+      + SA++H  V+ ++ +EA+A + +M     
Sbjct: 114 LHLGL--KFIGLVSY-----HFPNFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSG 166

Query: 167 -----------SECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
                      S C +     L Y+ ++  Y+   +L +  +  Q L+ K  S  +   N
Sbjct: 167 VSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L         + A + + E+ +  I+ +  + + + +   K    E     L +ME +
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + V Y++L++ Y   G  +E  ++     S   +     Y  ++  L K+G++++A
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           +++  E   +  T +    N LL     R+ +  A+  ++ +  +G+ P   ++  L   
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             + G + + L  F++   S    VPD+ + T   +     G +  A
Sbjct: 407 LARNGHLYQALMHFREMERS--GIVPDNVIYTILIDGFCRNGALSDA 451


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 151/342 (44%), Gaps = 16/342 (4%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A+     + ++   PD  T S L+++ V+  K  EAE L  +M   G +   + YN M
Sbjct: 300 SEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSM 359

Query: 182 LNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++ +    +LD   +M   +  K  SPDV+T+++ +         +   K   E+ +  +
Sbjct: 360 IDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             + I+Y+TL   + ++     A   L+EM       N V  ++LL    N G   + L 
Sbjct: 420 VANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALE 479

Query: 301 IWKKM----MSLFAK--MNDAE-----YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           ++K M    M L A    ND E     Y  +I  L+  G+F +AE +Y+E        D 
Sbjct: 480 MFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDT 539

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N ++     +++L+ A   ++ + +KG  P   T+  L  GY K G++   LE F +
Sbjct: 540 ITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCE 599

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
                R  V +        +   + G+I+GA  +   + ++G
Sbjct: 600 M--GRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 173/434 (39%), Gaps = 55/434 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTC--SALLHSYVQNKKSAEAEALMEKM 166
           Y   +D + K+    SA N    + +  R  P+    SA++    ++ +  +A+ L  +M
Sbjct: 215 YGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEM 274

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVV--------------- 210
            E G       YN M+N + S+G+  +  ++L+E+ ++  SPDVV               
Sbjct: 275 QEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKF 334

Query: 211 --------------------TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
                               TYN  +   + QN  + AE+ F  +      PD I++S L
Sbjct: 335 FEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSIL 394

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
              Y   +  +     L EM +R    N + Y++L+  +  +G  +  L + ++M+S   
Sbjct: 395 IDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGV 454

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----------NILLAAY 359
             N      ++  L   G+ + A  ++   +      D   P           NIL+   
Sbjct: 455 CPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGL 514

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           IN  +   AE  Y  +  +G+ P   T+  +  G  K+ ++++  + F  ++GS + + P
Sbjct: 515 INEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF-DSMGS-KGFSP 572

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIV 476
           D    T   N   + G +     +   +   G V+  I Y +L+  + + G +   L I 
Sbjct: 573 DVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIF 632

Query: 477 ERMQKDNVQMDAET 490
           + M    V  D  T
Sbjct: 633 QEMISSGVYPDTIT 646



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 114/275 (41%), Gaps = 11/275 (4%)

Query: 193 KVPQMLQELKKNTS----PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           K+P  L    K T     P +VT++  L     ++    A   F ++ K    P+ I+++
Sbjct: 126 KLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK----PNVIAFT 181

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL +   +     +A   L  M +   + N++ Y +++     MG     L + +KM  +
Sbjct: 182 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 241

Query: 309 F-AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              K N   Y+ +I  L K G    A+N++ E +    + +    N ++  + +  +   
Sbjct: 242 SRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSE 301

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A+     +  + + P   T+ +L    +K+G+  +  E + + +   R  +P+     + 
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML--PRGIIPNTITYNSM 359

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
            +   +Q  +D AE +   +   G     I  S+L
Sbjct: 360 IDGFSKQNRLDAAERMFYLMATKGCSPDVITFSIL 394


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 159/365 (43%), Gaps = 5/365 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   + ++ K   L  A   FE+L    R P T +   ++  Y    K  EA +L+E+  
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G +   + YN +L      G++D+  ++ +E+KK+ +P++ TYN+ +         +T
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDT 395

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A +    ++K  + P+  + + +     K +  ++A    +EM+ + C  + + + SL+ 
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               +G  D+  ++++KM+    + N   YT +I +    G  E    IY +  + + + 
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D ++ N  +       + E   + +  +  +   P   ++ +L  G +K G   +  E F
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELF 575

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
                  +  V D R      +   + G ++ A  LL  ++  G   T + Y S++   A
Sbjct: 576 YSM--KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 467 KAGKM 471
           K  ++
Sbjct: 634 KIDRL 638



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/433 (17%), Positives = 177/433 (40%), Gaps = 42/433 (9%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  LR+LK    A+E   W E + ++      Y   L ++++ R   + +     +   
Sbjct: 68  VIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVA 127

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAE---------------------------------- 160
             GP  +TC  ++   V+  K  E                                    
Sbjct: 128 GFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 161 -ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L ++M E G+      +  ++  +   G++D    +L E+K ++   D+V YN+ + +
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                  + A K F E++   + PD ++Y+++  +  K    ++A    + +EK      
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             AY++++  Y + G  DE   + ++  +  +  +   Y C+++ L K+G+ ++A  +++
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           E +      +    NIL+       +L+ A    + +   G+ P   T  ++     K  
Sbjct: 368 EMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEI 457
           ++++    F++     +   PD     +  + L + G +D A  +   + ++    ++ +
Sbjct: 427 KLDEACAMFEEM--DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIV 484

Query: 458 YNSLLRTYAKAGK 470
           Y SL++ +   G+
Sbjct: 485 YTSLIKNFFNHGR 497



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 147/375 (39%), Gaps = 63/375 (16%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           R  S+VY            KE+GH ++K  +N+                         D+
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ---------------------NCSPDL 517

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           +L++     ++D + K          FE +  +   PD  + S L+H  ++   + E   
Sbjct: 518 QLLN----TYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
           L   M E G +     YN +++ +   G+++K  Q+L+E+K K   P VVTY   +   A
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLT--------------------------SLY 254
             +  + A   F E K  +I+ + + YS+L                           +LY
Sbjct: 634 KIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLY 693

Query: 255 ---------IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
                    +K E   +A    + M++  C  N+V Y  L++    +   ++    W++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                K +   YT +IS L K G   +A  ++D +++  G  D    N ++    N N+ 
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRA 813

Query: 366 EMAESFYNRLVTKGI 380
             A S +     +G+
Sbjct: 814 MDAFSLFEETRRRGL 828



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 133/300 (44%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A   FE +  K+  PD  T  +L+    +  +  +A  + EKM + 
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
                 + Y  ++  + ++G+ +   ++ +++  +N SPD+   N ++       + E  
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K  +  PD  SYS L    IK     +       M+++ C  +  AY+ ++  
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S     +
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             + + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 11/343 (3%)

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
           CP  YN +L +       D + Q+L E+      P V T    +  C   N         
Sbjct: 97  CPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVV 156

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             ++K K  P + +Y+TL   +  +   +   T  ++M++         +++L+  +   
Sbjct: 157 QMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKE 216

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  D  L +  +M S     +   Y   I S  K+G+ + A   + E E+     D    
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--KKA 410
             ++      N+L+ A   +  L      PC   +  +  GY   G+ ++       ++A
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
            GS+   +  + ++T     L + G +D A  +   ++     +   YN L+    +AGK
Sbjct: 337 KGSIPSVIAYNCILTC----LRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 471 M--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           +     + + MQK  +  +  T  ++  ++     + E  ++F
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  ++   QN     A  +M+ M + G       YN ++N    NGQL++
Sbjct: 284 PDQI----TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L Q + +   PD+ T+N  +AA  + N  E A     ++    + PD  +++ L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P  A    +EM+   C  + V Y++L+    ++G   + L + K M S     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I  L K    E+AE ++D+ +    + +    N L+       +++ A    
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLI 519

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           N+++++G++P   T+  +   Y K+G ++K
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKK 549



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+LN+ +   ++  +  +  E+  +   PDVVT+N  + A    +   TA     E+ 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +++TL   +++    E A      M +  C   +V  + L++ Y  +G  +
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L   ++ ++   + +   Y   ++ L +      A  + D         D    NI++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  QLE A+   N++V +G  P  TT+  L        ++E+ L+  ++   +V+ 
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV--TVKG 386

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             PD        N L + GD   A  L   ++N+G    E+ YN+L+      GK+
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 47/383 (12%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
            E +  +   PD  T + L+  +V+      A  +  +M E G     +  N ++N Y  
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G++ D +  + QE+     PD +TYN ++      +    A K    + +   DPD  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------------------- 287
           Y+ + +   K    E+A   L +M  R C  +   +++L++                   
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 288 -------LYT---------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
                  +YT          +G     LR++++M +     ++  Y  +I +L  LG+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 332 KAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           KA ++  + ES   TG PR     N ++     + ++E AE  ++++  +GI     T+ 
Sbjct: 444 KALDLLKDMES---TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  G  K  +++       + I       P++    +      +QGDI  A  +L T+ 
Sbjct: 501 TLIDGLCKDKKIDDAFGLINQMISE--GLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 449 -NAGHVSTEIYNSLLRTYAKAGK 470
            N   V    Y +L+    KAG+
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGR 581



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 141/337 (41%), Gaps = 21/337 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFF 130
            N ++  L    R + AL++      Q  +K VS D   + + ++ + K+     A   F
Sbjct: 359 FNTLIAALCTGNRLEEALDLAR----QVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E + +    PD  T + L+ +     K  +A  L++ M   G  +  + YN +++     
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            ++++  ++  ++  +  S + +T+N  +         + A     ++    + P+ I+Y
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITY 534

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +++ + Y K    +KAA  L+ M       + V Y +L++     G     L++ + M  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----- 362
              +     Y  V+ SL +      A +++ E   +   G+P  P+ L    + R     
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV---GEP--PDALTYKIVFRGLCRG 649

Query: 363 -NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
              ++ A  F   +V KG  P ++++ +L  G L  G
Sbjct: 650 GGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 169/390 (43%), Gaps = 15/390 (3%)

Query: 96  WMELQYDI--KLVSGDYAVHL-------DLISKIRGLSSAENFFENLPDKMRGPD--TCS 144
           W++L ++I  ++V G   +++       + + K R   +   F  ++  K    D  T +
Sbjct: 237 WVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYN 296

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKK 203
            L+++Y +     EA  L+   S  G     L YN +L      G+ D+   +L E L+ 
Sbjct: 297 TLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL 356

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             +P+  TYN  L     +++   A++ F E+ +  + PD +S+S+L  +  +     +A
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               +EME+     + V Y+ L+  +   G   + L++  +M++    M+   Y   ++ 
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L K   F  A+ +++E        D      L+  Y     ++ A + +  +V   +KP 
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             T+  L  G+ K G+M +  E +   I   +  +PDH       N     G +  A +L
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIR--KDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 444 LVTLRNAGHVSTEIY-NSLLRTYAKAGKMP 472
              +   G     +  N+L++ Y ++G MP
Sbjct: 595 CDQMLEKGIRPNLVTCNTLIKGYCRSGDMP 624



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 3/283 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +  L+   + K  A+A+ L  +M E G +     +  ++  Y  +G +DK   + + +
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            + N  PD VTYN  +       +   A++ + ++ +  I PD ISY T+ + +    L 
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLL 588

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     +M ++  R N V  ++L+  Y   G   +      KM+S     +   Y  +
Sbjct: 589 PEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTL 648

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I   +K    EKA  + +E E      +    N++L  +    +++ AE    +++  GI
Sbjct: 649 IDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGI 708

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
            P   T+  L  G++ +  M++      + +   R  VPD R 
Sbjct: 709 NPDGATYSSLINGHVSQDNMKEAFRFHDEMLQ--RGLVPDDRF 749



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A N FE +      PD  T + L+  + +  +   A+ L + M     +   + Y  
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 181 MLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +LN + S+G L +   +  Q L+K   P++VT N  +       D   A +   ++    
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD  SY+TL   Y+K    EKA   + EMEKR  + N + Y+ +L+ +   G   E  
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           ++ +KM+ +    + A Y+ +I+  V     ++A   +DE
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDE 737



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 144/347 (41%), Gaps = 27/347 (7%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM----- 166
           +HL L  K  GL S      + P+      + SA++H  V+ ++ +EA+A + +M     
Sbjct: 114 LHLGL--KFIGLVSY-----HFPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSG 166

Query: 167 -----------SECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
                      S C +     L Y+ ++  Y+   +L +  +  Q L+ K  S  +   N
Sbjct: 167 VSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L         + A + + E+ +  I+ +  + + + +   K    E     L +ME +
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + V Y++L++ Y   G  +E  ++     S   +     Y  ++  L K+G++++A
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           +++  E   +  T +    N LL     R+ +  A+  ++ +  +G+ P   ++  L   
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             + G + + L  F++   S    VPD+ + T   +     G +  A
Sbjct: 407 LARNGHLYQALMHFREMERS--GIVPDNVIYTILIDGFCRNGALSDA 451


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 14/337 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S  +     S A  +FE
Sbjct: 227 NNVINACGAAGNWKKALELCKKMTENG----VGPDLITHNIVLSAFKNGAQYSKAIAYFE 282

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYI 186
            +      PDTC+   ++H  V+     EA  L   M E   + CP   + Y  ++  Y 
Sbjct: 283 IMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTI-CPPDVVTYTSIMYSYS 341

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ +    +   +  +   P++V+YN  L A AS      A + F  LK+    PD +
Sbjct: 342 VCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIV 401

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY++L + Y +  LPEKA     EM K  C+ N+V+Y++L+  Y + G   E + +  +M
Sbjct: 402 SYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM 461

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                + +    + ++++  +  +  K   I    +S     +    N  + +Y++    
Sbjct: 462 EQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDY 521

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           + A   Y  + T  +KP   T+ +L  G  K G   K
Sbjct: 522 KKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/427 (21%), Positives = 182/427 (42%), Gaps = 12/427 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+      KHA+ V  WM++Q +    +  Y + + L ++   +  A   F  + + 
Sbjct: 123 LIREITISGSLKHAVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEW 182

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT ++L+H++ +  +   A  +M+ M           YN+++N   + G   K 
Sbjct: 183 RCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKA 242

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ +++ +N   PD++T+N+ L+A  +      A   F  +K +K+ PD  + + +   
Sbjct: 243 LELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHC 302

Query: 254 YIKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+ L  +A      M E+RT C  + V Y+S++  Y+  G  +    ++  M++   +
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVR 362

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  ++ +    G   +A   +   +      D      LL AY      E A   
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREV 422

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNK 430
           +N +     KP   ++  L   Y   G +++ +    +     ++  V     +  A  +
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMD 487
             +   I     +L   ++ G  ++T  YNS + +Y   G  K  L +   M+  NV+ D
Sbjct: 483 CRQPTKIG---IILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPD 539

Query: 488 AETQKVL 494
           A T  +L
Sbjct: 540 AVTYNIL 546


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 145/331 (43%), Gaps = 11/331 (3%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-----QLDKVPQML 198
           SAL+ +Y ++  + EA  ++E M   G     + YN +++     G      L    QML
Sbjct: 27  SALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQML 86

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           Q+      PD  T+N  LAAC+     E A   F E+       D  +Y+T      K  
Sbjct: 87  QD---GLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 143

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E A   + +ME    + N V YS+L+  ++ +   DE L++ +KM SL  +++   Y 
Sbjct: 144 NMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYN 203

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +++  VK G++++   + ++ E++    D    N L+  Y  + +L+M       +  +
Sbjct: 204 TLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQ 263

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P   T+  L   Y K G        +     S  K   D  L ++  + L + G ++
Sbjct: 264 GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK--ADVVLFSSFIDTLAKNGLVE 321

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
            A  LL  +   G   +   YN+++  + K+
Sbjct: 322 CALSLLDEMIKMGIKPNVVTYNTIIDAFGKS 352



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 128/324 (39%), Gaps = 33/324 (10%)

Query: 27  GLATEK-------KGAGGR----------DTLGRRLLSLVYAKRSAAITMRKWKEEGHTV 69
           GLATE        KGAG R          D  G+  + L    R      R+  ++G   
Sbjct: 37  GLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDL----RFTLGYFRQMLQDGLCP 92

Query: 70  HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG----DYAVHLDLISKIRGLSS 125
            +   N ++    +    + A  V + M     I L SG     Y   +D I K   +  
Sbjct: 93  DRKTFNSLLAACSRAGHLEDARTVFDEM-----IHLGSGRDIYTYNTFVDAICKCGNMEL 147

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A     ++      P+  T S L+  + + +K  EA  L EKM   G     + YN +L 
Sbjct: 148 ATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLA 207

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y+  G+ D++  + ++++      D VTYN  +     Q   +       +++   + P
Sbjct: 208 IYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAP 267

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             ++YSTL  +Y K  +   A     + ++   + + V +SS +      G  +  L + 
Sbjct: 268 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLL 327

Query: 303 KKMMSLFAKMNDAEYTCVISSLVK 326
            +M+ +  K N   Y  +I +  K
Sbjct: 328 DEMIKMGIKPNVVTYNTIIDAFGK 351



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 16/268 (5%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A +AF      +      ++S L S Y +  L  +A   L+ M+    R   V+Y+++
Sbjct: 5   DLARRAFDSGIADRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAV 64

Query: 286 LSLYTNMGYKDE-VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +      G      L  +++M+      +   +  ++++  + G  E A  ++DE   + 
Sbjct: 65  IDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLG 124

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N  + A      +E+A      +    IKP   T+  L  G+ K   +EK  
Sbjct: 125 SGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSK---LEKYD 181

Query: 405 ECFK-----KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIY 458
           E  K     K++G     V  + L+ A Y K    G  D    +   + N G    T  Y
Sbjct: 182 EALKLREKMKSLGIQLDRVCYNTLL-AIYVK---TGKYDEIATVCEDMENLGIEKDTVTY 237

Query: 459 NSLLRTYAKAGKMPLI--IVERMQKDNV 484
           NSL+  Y K G++ ++  +V+ M+   V
Sbjct: 238 NSLINGYGKQGRLDMVAFLVQDMRAQGV 265


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  +H   QN   + A  +M+ M + G       YN ++N    NG+LD+
Sbjct: 300 PDQV----TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ Q + +   PD  T+N  + A +SQN  E A     EL    + PD  +++ L +
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P       +EM+   C  + V Y+ L+    +MG     L +  +M S     
Sbjct: 416 ALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPR 475

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I +L K    E+AE ++D+ ++   +      N L+       +++ A    
Sbjct: 476 STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELI 535

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            ++V +G++P   T+  +   Y K+G ++K
Sbjct: 536 EQMVKEGLQPNNITYNSILTHYCKQGNIKK 565



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/482 (21%), Positives = 191/482 (39%), Gaps = 51/482 (10%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI- 117
           +R+ + EGH V    +   V    +L+R+  A+++    +L  D   V  D  V   L+ 
Sbjct: 112 VREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLV-LNQLDNDTFGVQADTVVFNHLLN 170

Query: 118 -----SKIRGLSSAEN--------------------------------FFENLPDKMRGP 140
                SK++ L S  N                                  E +      P
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP 230

Query: 141 D--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQM 197
           D  T + L+  +++      A  +  KM E G     +  N ++N Y   G++ D +  +
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYI 290

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
            QE+     PD VTYN ++           A K    + +   DPD  +Y+T+ +   K 
Sbjct: 291 QQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKN 350

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              ++A   + +M  R C  +   +++L+   ++    +E L + +++       +   +
Sbjct: 351 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTF 410

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I++L K+G+      +++E +S   T D    NIL+    +  +L  A    N + +
Sbjct: 411 NILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES 470

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQG 435
            G      T+  +     KK ++E+  E F +  A G  R  V  + LI    + L +  
Sbjct: 471 NGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI----DGLCKAK 526

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQK 492
            ID A  L+  +   G     I YNS+L  Y K G  K    I+E M  +  ++D  T  
Sbjct: 527 RIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYG 586

Query: 493 VL 494
            L
Sbjct: 587 TL 588



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 21/337 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFF 130
            N ++  L    R + AL++   +     +K +S D   + + ++ + K+         F
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELT----VKGLSPDVYTFNILINALCKVGDPHLGIRLF 430

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E +      PD  T + L+       K   A  L+ +M   G  +  + YN +++     
Sbjct: 431 EEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKK 490

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            ++++  ++  ++  +  S   VT+N  +         + A +   ++ K  + P+ I+Y
Sbjct: 491 MRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITY 550

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +++ + Y K    +KAA  L+ M       + V Y +L++     G     L++ + M  
Sbjct: 551 NSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRI 610

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN---- 363
              +     Y  VI SL +      A N++ E   +   G+P  P+ L    + R+    
Sbjct: 611 KGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEV---GEP--PDALTYKIVFRSLCRG 665

Query: 364 --QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
              ++ A  F   +V KG  P ++++ +L  G L  G
Sbjct: 666 GGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 144/353 (40%), Gaps = 14/353 (3%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ--YDIKLVSGDYAVHLDLISKIRG 122
           +G    +   N  V  L +     HAL+V + M LQ  +D  + +  Y   ++ +SK   
Sbjct: 296 DGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLM-LQEGHDPDVFT--YNTVINCLSKNGE 352

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A+     + D+   PDT +   L+ +     +  EA  L  +++  G       +N 
Sbjct: 353 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNI 412

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++N     G      ++ +E+K +  +PD VTYN+ +    S      A     E++   
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
                ++Y+T+     K    E+A     +M+ +   ++ V +++L+         D+  
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDAT 532

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILL 356
            + ++M+    + N+  Y  +++   K G  +KA +I    E+++  G   D      L+
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADI---LETMTANGFEIDVVTYGTLI 589

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
                  + ++A      +  KGI+P    +  +     ++  +   L  F++
Sbjct: 590 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFRE 642


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 18/339 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQM 197
           T + ++H+Y +  +  + +A++ +M +    +C  P    +N M++     G  +    +
Sbjct: 97  TLNIMVHNYCKALEFDKVDAVISEMEK----RCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           +  +  K   P +VTYN  L         + A + F E+    + PD  S++ L   + +
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   E+A    KEM  R  + + V++S L+ L+   G  D  +   ++M       +   
Sbjct: 213 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 272

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT VI    + G    A  + DE        D    N LL       +L  AE   N + 
Sbjct: 273 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 332

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G+ P   T+  L  GY  +G+++K L+ F   +   ++  PD        + +  QGD
Sbjct: 333 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN--QRLRPDIVTYNTLIDGMCRQGD 390

Query: 437 IDGAEHLLVTLRN----AGHVSTEIYNSLLRTYAKAGKM 471
           +D A  L   + +      HV+   Y+ L+ ++ + G++
Sbjct: 391 LDKANDLWDDMHSREIFPNHVT---YSILIDSHCEKGQV 426



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 7/278 (2%)

Query: 135 DKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           D+M G    PD  T + LL+   + ++  +AE L+ +M E G       +  +++ Y   
Sbjct: 294 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIE 353

Query: 189 GQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+LDK  Q+    L +   PD+VTYN  +     Q D + A   + ++   +I P+ ++Y
Sbjct: 354 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 413

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L   + +    E A   L EM  +    N + Y+S++  Y   G   +  +  +KMM 
Sbjct: 414 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMV 473

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                +   Y  +I   +K  +   A  + +  E      D    N+L+  +     ++ 
Sbjct: 474 NKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE 533

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           A   + ++  KGI+P   T+  +  G++  G  ++  +
Sbjct: 534 AGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 571



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 1/254 (0%)

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
           ++A  + ++M  CG L   + YN +LN      +L     +L E++ +   PD+ T+   
Sbjct: 287 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 346

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +     +   + A + F  +   ++ PD ++Y+TL     +    +KA     +M  R  
Sbjct: 347 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 406

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             N V YS L+  +   G  ++      +M++     N   Y  +I    + G   K + 
Sbjct: 407 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 466

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
              +      + D    N L+  YI  +++  A    N +  + ++P   T+ +L  G+ 
Sbjct: 467 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 526

Query: 396 KKGQMEKVLECFKK 409
             G +++    F+K
Sbjct: 527 VHGNVQEAGWIFEK 540



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + +   L  A + ++++  +   P+  T S L+ S+ +  +  +A   +++M 
Sbjct: 378 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 437

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             G L   + YN ++  Y  +G + K  + LQ++  N  SPD++TYN  +     ++   
Sbjct: 438 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 497

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K    ++K K+ PD ++Y+ L + +      ++A    ++M  +    +R  Y S++
Sbjct: 498 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMI 557

Query: 287 SLYTNMGYKDEVLRIWKKMM 306
           + +   G   E  ++  +M+
Sbjct: 558 NGHVTAGNSKEAFQLHDEML 577



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 3/220 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F+ + ++   PD  T + L+    +     +A  L + M         + Y+ 
Sbjct: 356 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 415

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +   GQ++     L E+  K   P+++TYN  +       +    +K   ++   K
Sbjct: 416 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 475

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+Y+TL   YIK +    A   L  MEK   + + V Y+ L++ ++  G   E  
Sbjct: 476 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 535

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            I++KM +   + +   Y  +I+  V  G  ++A  ++DE
Sbjct: 536 WIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDE 575



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 112/273 (41%), Gaps = 5/273 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
              N+  +  T N+ +       + +  +    E++K  + PD ++++ +     +    
Sbjct: 87  FSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDA 146

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   +  M  +  +   V Y+S+L      G  D+   ++K+M       +   +T +
Sbjct: 147 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 206

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    ++GE E+A  IY E        D    + L+  +  R +++ A ++   +   G+
Sbjct: 207 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 266

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    + ++  G+ + G M   L    + +G     +PD        N L ++  +  A
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC--GCLPDVVTYNTLLNGLCKERRLLDA 324

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           E LL  +R  G V  ++  + +L+  Y   GK+
Sbjct: 325 EGLLNEMRERG-VPPDLCTFTTLIHGYCIEGKL 356



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           ++ + S  +++N      ++ +  K  EF+K + +  E E      D    N+++ A   
Sbjct: 83  YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 142

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
               E A +  + +V+KG+KP   T+  +  G  + G  +K  E FK+         PD 
Sbjct: 143 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM--DDFGVAPDV 200

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           R  T         G+I+ A  +   +R+ G     + ++ L+  +A+ GKM
Sbjct: 201 RSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 251



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +D   +   +  A  F + + +K   P+  T ++++  Y ++   ++ +  ++KM 
Sbjct: 413 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 472

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
                   + YN +++ YI   ++    ++L  ++K    PDVVTYN+ +   +   + +
Sbjct: 473 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQ 532

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F ++    I+PD  +Y ++ + ++     ++A     EM +R   K R A +   
Sbjct: 533 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGT--- 589

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
             + N+    E L    K M +     D + TC I    K  EF
Sbjct: 590 VQFVNIQNSAESL----KQMPM-----DLKVTCSIYFFAKTQEF 624


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 8/273 (2%)

Query: 143 CSALLHSYV-------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           C+  +H+Y        +NKK  EA ALMEK++  G       YN +LN     G+L++  
Sbjct: 263 CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 322

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+++  N  +PDVVTY   +     +     A K F E+    +  D + Y+ L    
Sbjct: 323 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIREL 382

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           ++     +A++  K M    C  + V  S+++   +  G     +RI+K M +     N+
Sbjct: 383 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 442

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y+ +I  L K  + + A  +  + +    T D    NIL+        +E A +F++ 
Sbjct: 443 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 502

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           ++  G KP   T+ +L  G+ K G  +     F
Sbjct: 503 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 535



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 138/319 (43%), Gaps = 3/319 (0%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYN 213
           K  EA ALMEK++  G       YN +LN     G+L++   +L+++  N  +PDVVTY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +     +     A K F E+    +  D + Y+ L    ++     +A++  K M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
            C  + V  S+++   +  G     +RI+K M +     N+  Y+ +I  L K  + + A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             +  + +    T D    N+L+        +E A +F++ ++  G KP   T+ +L  G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
           + K G  +       +   ++     D    TA  + L +   I+ A  L+  +   G  
Sbjct: 241 FCKAGNTDAASHSLAQET-TINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCT 299

Query: 454 ST-EIYNSLLRTYAKAGKM 471
            T   YN+LL    K G++
Sbjct: 300 PTIATYNALLNGLCKMGRL 318



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/400 (20%), Positives = 162/400 (40%), Gaps = 8/400 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++REL +  +   A  V + M     +  V    +  +D +SK   + +A   F+++  +
Sbjct: 97  LIRELLQTGKIPQASSVYKTMTSHGCVPDVV-TLSTMIDGLSKAGRIGAAVRIFKSMEAR 155

Query: 137 MRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+    SAL+H   + +K   A  ++ +M +       + YN +++    +G ++  
Sbjct: 156 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAA 215

Query: 195 PQMLQE-LKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
                E L+    PDV TYN+ ++  C + N    +     E        D  +Y+ +  
Sbjct: 216 RAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVD 275

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K +  E+A   ++++    C      Y++LL+    MG  +E + + +K++      
Sbjct: 276 WLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 335

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   YT +I  L K     +A  ++ E        D      L+   +   ++  A S Y
Sbjct: 336 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 395

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             + + G  P   T   +  G  K G++   +  FK      R   P+  + +A  + L 
Sbjct: 396 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM--EARGLAPNEVVYSALIHGLC 453

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           +   +D A  +L  ++ A      I YN L+    K+G +
Sbjct: 454 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDV 493



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 10/320 (3%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G T+  +    IV  L K K+ + A+ + E +        ++  Y   L+ + K+  L  
Sbjct: 262 GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIA-TYNALLNGLCKMGRLEE 320

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A +    + D    PD  T ++L+    + K+S EA  L ++M+  G     + Y  ++ 
Sbjct: 321 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 184 LYISNGQLDKVPQMLQELKKNTS----PDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
             +  G   K+PQ     K  TS    PDVVT +  +   +       A + F  ++   
Sbjct: 381 ELLQTG---KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 437

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + P+ + YS L     K    + A   L +M+K  C  + + Y+ L+      G  +   
Sbjct: 438 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 497

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
             + +M+    K +   Y  +IS   K G  + A  ++D+  S   + +      L++  
Sbjct: 498 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGL 557

Query: 360 INRNQLEMAESFYNRLVTKG 379
             R QL  A  ++  +  +G
Sbjct: 558 CKRRQLTKASLYFQHMKERG 577


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 14/355 (3%)

Query: 123 LSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           L  A  FFE+L  K RG   C    +ALL  + +     EA  ++++M + G     + Y
Sbjct: 267 LDQAVAFFEDL--KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 324

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +   Y   G  ++  + L  +  K   P+  TYN  + A A+    + A   F  +KK
Sbjct: 325 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 384

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+  +Y+ +  +  K          L+EM +  C  NRV ++++L++    G +D 
Sbjct: 385 NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDY 444

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V R+   M S   +++   Y  +IS+  + G    A  +YDE  S   T      N LL 
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 504

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSV-R 415
               +     A+S  ++++  G KP   ++ LL   Y K G    +    K+  +G++  
Sbjct: 505 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 564

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
            WV    L+ A +        ++G E     ++  G+     I+NS+L  YAK G
Sbjct: 565 SWVILRTLVIANFKCRR----LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 615



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 159/404 (39%), Gaps = 47/404 (11%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-------SALLHSYVQNKKSAEAEALM 163
           A  L+++ +  G     +   +L D+M  P          + +LH+  +  +   A  L 
Sbjct: 144 AAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLF 203

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
            ++   G +   + YN +L++Y   G+   ++  +L+E++     PD  T +  +AAC  
Sbjct: 204 AELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGR 263

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A   F +LK     P  ++Y+ L  ++ K     +A   LKEME   C+ + V 
Sbjct: 264 DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVT 323

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD--- 338
           Y+ L   Y   G+ +E  +    M S     N   Y  V+++   +G  ++A  ++D   
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 339 -------------------------------EWESISGTGDPRVP-NILLAAYINRNQLE 366
                                          E  S SG    RV  N +LA    R   +
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                 N + + G++    T+  L   Y + G      + + + I S   + P      A
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYNA 501

Query: 427 AYNKLEEQGDIDGAEHLLV-TLRNAGHVSTEIYNSLLRTYAKAG 469
             N L  QGD   A+ ++   L+N    + + Y+ LL+ YAK G
Sbjct: 502 LLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 545



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 1/255 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ +Y +      A  + ++M   GF  C   YN +LN+    G       ++ +
Sbjct: 462 DTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSK 521

Query: 201 LKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + KN   P+  +Y+L L   A   +    E    E+    I P W+   TL     K   
Sbjct: 522 MLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E      +E++ +  + + V ++S+L++Y   G   +   ++  +       +   Y  
Sbjct: 582 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    K  E  +AE I  + +S     D    N ++  +  +  ++ A+   + ++  G
Sbjct: 642 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 701

Query: 380 IKPCYTTWELLTWGY 394
           + PC  T+  L  GY
Sbjct: 702 MAPCVVTYHTLVGGY 716



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 11/270 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL+   +    + A++++ KM + GF      Y+ +L  Y   G    +  + +E+
Sbjct: 498 TYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEV 557

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
              T  P  V     + A       E  EKAF E+K     PD + ++++ ++Y K  L 
Sbjct: 558 YVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLY 617

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA      +++     + + Y+SL+ +Y       E  +I K++ S   K +   Y  V
Sbjct: 618 SKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 677

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I+   K G  ++A+ I  E        D   P +     L+  Y +      A    N +
Sbjct: 678 INGFCKQGLIKEAQRILSEM-----IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 732

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +   +KP   T+  +   Y K  + ++  E
Sbjct: 733 IHHNLKPMELTYRRVVDSYCKAKRYDEARE 762



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F+ +  +   PD    +++L  Y +N   ++A  + + + + G     +
Sbjct: 578 KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 637

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN ++++Y  + +  +  ++L++LK +   PDVV+YN  +     Q   + A++   E+
Sbjct: 638 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 697

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P  ++Y TL   Y  +E+  +A   +  M     +   + Y  ++  Y      
Sbjct: 698 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRY 757

Query: 296 DE 297
           DE
Sbjct: 758 DE 759


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 14/355 (3%)

Query: 123 LSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           L  A  FFE+L  K RG   C    +ALL  + +     EA  ++++M + G     + Y
Sbjct: 267 LDQAVAFFEDL--KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 324

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +   Y   G  ++  + L  +  K   P+  TYN  + A A+    + A   F  +KK
Sbjct: 325 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 384

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+  +Y+ +  +  K          L+EM +  C  NRV ++++L++    G +D 
Sbjct: 385 NGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDY 444

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V R+   M S   +++   Y  +IS+  + G    A  +YDE  S   T      N LL 
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 504

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSV-R 415
               +     A+S  ++++  G KP   ++ LL   Y K G    +    K+  +G++  
Sbjct: 505 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 564

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
            WV    L+ A +        ++G E     ++  G+     I+NS+L  YAK G
Sbjct: 565 SWVILRTLVIANFKCRR----LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNG 615



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 159/404 (39%), Gaps = 47/404 (11%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-------SALLHSYVQNKKSAEAEALM 163
           A  L+++ +  G     +   +L D+M  P          + +LH+  +  +   A  L 
Sbjct: 144 AAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLF 203

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
            ++   G +   + YN +L++Y   G+   ++  +L+E++     PD  T +  +AAC  
Sbjct: 204 AELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGR 263

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A   F +LK     P  ++Y+ L  ++ K     +A   LKEME   C+ + V 
Sbjct: 264 DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVT 323

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD--- 338
           Y+ L   Y   G+ +E  +    M S     N   Y  V+++   +G  ++A  ++D   
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 339 -------------------------------EWESISGTGDPRVP-NILLAAYINRNQLE 366
                                          E  S SG    RV  N +LA    R   +
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
                 N + + G++    T+  L   Y + G      + + + I S   + P      A
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYNA 501

Query: 427 AYNKLEEQGDIDGAEHLLV-TLRNAGHVSTEIYNSLLRTYAKAG 469
             N L  QGD   A+ ++   L+N    + + Y+ LL+ YAK G
Sbjct: 502 LLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGG 545



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 1/255 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ +Y +      A  + ++M   GF  C   YN +LN+    G       ++ +
Sbjct: 462 DTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSK 521

Query: 201 LKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + KN   P+  +Y+L L   A   +    E    E+    I P W+   TL     K   
Sbjct: 522 MLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E      +E++ +  + + V ++S+L++Y   G   +   ++  +       +   Y  
Sbjct: 582 LEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNS 641

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    K  E  +AE I  + +S     D    N ++  +  +  ++ A+   + ++  G
Sbjct: 642 LMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG 701

Query: 380 IKPCYTTWELLTWGY 394
           + PC  T+  L  GY
Sbjct: 702 MAPCVVTYHTLVGGY 716



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 11/270 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL+   +    + A++++ KM + GF      Y+ +L  Y   G    +  + +E+
Sbjct: 498 TYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEV 557

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
              T  P  V     + A       E  EKAF E+K     PD + ++++ ++Y K  L 
Sbjct: 558 YVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLY 617

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA      +++     + + Y+SL+ +Y       E  +I K++ S   K +   Y  V
Sbjct: 618 SKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTV 677

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I+   K G  ++A+ I  E        D   P +     L+  Y +      A    N +
Sbjct: 678 INGFCKQGLIKEAQRILSEM-----IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 732

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +   +KP   T+  +   Y K  + ++  E
Sbjct: 733 IHHNLKPMELTYRRVVDSYCKAKRYDEARE 762



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F+ +  +   PD    +++L  Y +N   ++A  + + + + G     +
Sbjct: 578 KCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 637

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN ++++Y  + +  +  ++L++LK +   PDVV+YN  +     Q   + A++   E+
Sbjct: 638 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 697

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P  ++Y TL   Y  +E+  +A   +  M     +   + Y  ++  Y      
Sbjct: 698 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRY 757

Query: 296 DE 297
           DE
Sbjct: 758 DE 759


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 18/339 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQM 197
           T + ++H+Y +  +  + +A++ +M +    +C  P    +N M++     G  +    +
Sbjct: 158 TLNIMVHNYCKALEFDKVDAVISEMEK----RCVFPDVVTHNVMVDARFRAGDAEAAMAL 213

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           +  +  K   P +VTYN  L         + A + F E+    + PD  S++ L   + +
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   E+A    KEM  R  + + V++S L+ L+   G  D  +   ++M       +   
Sbjct: 274 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 333

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT VI    + G    A  + DE        D    N LL       +L  AE   N + 
Sbjct: 334 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 393

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G+ P   T+  L  GY  +G+++K L+ F   +   ++  PD        + +  QGD
Sbjct: 394 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN--QRLRPDIVTYNTLIDGMCRQGD 451

Query: 437 IDGAEHLLVTLRN----AGHVSTEIYNSLLRTYAKAGKM 471
           +D A  L   + +      HV+   Y+ L+ ++ + G++
Sbjct: 452 LDKANDLWDDMHSREIFPNHVT---YSILIDSHCEKGQV 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 135 DKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           D+M G    PD  T + LL+   + ++  +AE L+ +M E G       +  +++ Y   
Sbjct: 355 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIE 414

Query: 189 GQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+LDK  Q+    L +   PD+VTYN  +     Q D + A   + ++   +I P+ ++Y
Sbjct: 415 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 474

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L   + +    E A   L EM  +    N + Y+S++  Y   G   +  +  +KMM 
Sbjct: 475 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMV 534

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                +   Y  +I   +K  +   A  + +  E      D    N+L+  +     ++ 
Sbjct: 535 NKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQE 594

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           A   + ++  KGI+P   T+  +  G++  G  ++  +   + +   R + PD + 
Sbjct: 595 AGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ--RGFAPDDKF 648



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 112/273 (41%), Gaps = 5/273 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
              N+  +  T N+ +       + +  +    E++K  + PD ++++ +     +    
Sbjct: 148 FSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDA 207

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   +  M  +  +   V Y+S+L      G  D+   ++K+M       +   +T +
Sbjct: 208 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 267

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    ++GE E+A  IY E        D    + L+  +  R +++ A ++   +   G+
Sbjct: 268 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 327

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    + ++  G+ + G M   L    + +G     +PD        N L ++  +  A
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC--GCLPDVVTYNTLLNGLCKERRLLDA 385

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           E LL  +R  G V  ++  + +L+  Y   GK+
Sbjct: 386 EGLLNEMRERG-VPPDLCTFTTLIHGYCIEGKL 417



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           ++ + S  +++N      ++ +  K  EF+K + +  E E      D    N+++ A   
Sbjct: 144 YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 203

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
               E A +  + +V+KG+KP   T+  +  G  + G  +K  E FK+         PD 
Sbjct: 204 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM--DDFGVAPDV 261

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           R  T         G+I+ A  +   +R+ G     + ++ L+  +A+ GKM
Sbjct: 262 RSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 312


>gi|115471209|ref|NP_001059203.1| Os07g0222700 [Oryza sativa Japonica Group]
 gi|34394024|dbj|BAC84055.1| putative DNA-binding protein [Oryza sativa Japonica Group]
 gi|113610739|dbj|BAF21117.1| Os07g0222700 [Oryza sativa Japonica Group]
 gi|117380751|gb|ABK34463.1| DNA-binding protein [Oryza sativa Japonica Group]
          Length = 411

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 19/316 (6%)

Query: 179 NHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           N M+ LY  I+ G++  V  +++  K+N  P   TY L +      ND    E    E+K
Sbjct: 85  NQMILLYKRIAPGKVASVLMLME--KENVKPSAFTYRLLIDLKGRSNDLAGIEVVLNEMK 142

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGY 294
              I+P   + + +   YI   L EKA   +KEME +    +  R    SLL LY  +  
Sbjct: 143 AYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGRHVIKSLLHLYAALNK 202

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            ++V RIW+  M     + D  +   I +  +LG  EKAE  ++   +       +  N 
Sbjct: 203 PNDVARIWE--MCTEPMLED--FLSAIKAWGELGLIEKAEETFEAMANAPEKLSSKYYNA 258

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           +L  Y     L   + F  R+   G      TW+ L   Y+  G++EK        + +V
Sbjct: 259 MLNVYAQNKLLSKGKQFVERMCRDGCPNGPLTWDALINLYVNSGEVEKA----DSFLLNV 314

Query: 415 RKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            +  PD + +  +Y  L     ++GDI   E +   L+N G+    + Y  LL  Y  A 
Sbjct: 315 AEENPDRKPLFTSYFFLMKGYAKRGDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVNAK 374

Query: 470 KMPLIIVERMQKDNVQ 485
                 +ERM+ DNV+
Sbjct: 375 VPAHGFLERMRGDNVR 390



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 115 DLISKIRG------LSSAENFFE---NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEK 165
           D +S I+       +  AE  FE   N P+K+      +A+L+ Y QNK  ++ +  +E+
Sbjct: 220 DFLSAIKAWGELGLIEKAEETFEAMANAPEKLSS-KYYNAMLNVYAQNKLLSKGKQFVER 278

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQML---QELKKNTSPDVVTYNLWLAACASQ 222
           M   G    PL ++ ++NLY+++G+++K    L    E   +  P   +Y   +   A +
Sbjct: 279 MCRDGCPNGPLTWDALINLYVNSGEVEKADSFLLNVAEENPDRKPLFTSYFFLMKGYAKR 338

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
            D    EK F  LK     P  + Y+ L   Y+  ++P  A   L+ M     R  +   
Sbjct: 339 GDIHNTEKIFDRLKNVGYAPRPLHYAVLLEAYVNAKVP--AHGFLERMRGDNVRPTKKIV 396

Query: 283 SSLLSL 288
           +SL +L
Sbjct: 397 TSLDTL 402


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  ++   QN     A  +M+ M + G       YN ++N    NGQL++
Sbjct: 284 PDQI----TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L Q + +   PD+ T+N  +AA  + N  E A     ++    + PD  +++ L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P  A    +EM+   C  + V Y++L+    ++G   + L + K M S     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I  L K    E+AE ++D+ +    + +    N L+       +++ A    
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           N+++++G++P   T+  +   Y K+G ++K
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKK 549



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+LN+ +   ++  +  +  E+  +   PDVVT+N  + A    +   TA     E+ 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMS 208

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +++TL   +++    E A      M +  C   +V  + L++ Y  +G  +
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L   ++ ++   + +   Y   ++ L +      A  + D         D    NI++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  QLE A+   N++V +G  P  TT+  L        ++E+ L+  ++   +V+ 
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV--TVKG 386

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             PD        N L + GD   A  L   ++N+G    E+ YN+L+      GK+
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 47/383 (12%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
            E +  +   PD  T + L+  +V+      A  +  +M E G     +  N ++N Y  
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G++ D +  + QE+     PD +TYN ++      +    A K    + +   DPD  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------------------- 287
           Y+ + +   K    E+A   L +M  R C  +   +++L++                   
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 288 -------LYT---------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
                  +YT          +G     LR++++M +     ++  Y  +I +L  LG+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 332 KAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           KA ++  + ES   TG PR     N ++     + ++E AE  ++++  +GI     T+ 
Sbjct: 444 KALDLLKDMES---TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  G  K  +++   E   + I       P++    +      +QGDI  A  +L T+ 
Sbjct: 501 TLIDGLCKDKKIDDAFELINQMISE--GLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 449 -NAGHVSTEIYNSLLRTYAKAGK 470
            N   V    Y +L+    KAG+
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGR 581



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 142/337 (42%), Gaps = 21/337 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFF 130
            N ++  L    R + AL++      Q  +K VS D   + + ++ + K+     A   F
Sbjct: 359 FNTLIAALCTGNRLEEALDLAR----QVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E + +    PD  T + L+ +     K  +A  L++ M   G  +  + YN +++     
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            ++++  ++  ++  +  S + +T+N  +         + A +   ++    + P+ I+Y
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 534

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +++ + Y K    +KAA  L+ M       + V Y +L++     G     L++ + M  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----- 362
              +     Y  V+ SL +      A +++ E   +   G+P  P+ L    + R     
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV---GEP--PDALTYKIVFRGLCRG 649

Query: 363 -NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
              ++ A  F   +V KG  P ++++ +L  G L  G
Sbjct: 650 GGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 160/340 (47%), Gaps = 8/340 (2%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCS 144
           ++ ALEV EW+ L++     +   A  L ++ K    + A   F    +   G      +
Sbjct: 143 WQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFAR-AEAASGNTVQVYN 201

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQELK 202
           A++  Y +  +  + + L++ M   G     + +N ++N  + +G +  +   ++L E++
Sbjct: 202 AMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVR 261

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++   PD++TYN  ++AC+ +++ E A K + ++   +  PD  +Y+ + S+Y +  +  
Sbjct: 262 RSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSR 321

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A    K++E +    + V Y+SLL  +   G  D+V  I + M+ +    ++  Y  +I
Sbjct: 322 EAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTII 381

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G+ + A  +Y + +    + D     +L+ +    N ++ A    + ++   +K
Sbjct: 382 HMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVK 441

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           P   T+  L  GY K G+  +  E F   + S  K  PDH
Sbjct: 442 PTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIK--PDH 479



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 170/396 (42%), Gaps = 39/396 (9%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F++L  K   PD  T ++LL+++ +     + + + E M + GF K  + YN +++
Sbjct: 323 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 382

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   GQ D   Q+  ++K    SPD VTY + + +    N  + A +   E+   ++ P
Sbjct: 383 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 442

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              ++S L   Y K     +A  T   M +   + + +AYS +L +        + ++++
Sbjct: 443 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLY 502

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI-- 360
           ++M+    K + A Y  ++  L K    E    +  + E + G     + +IL+      
Sbjct: 503 QEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFD 562

Query: 361 -NRNQLEMA----------------------ESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
              N L +A                      E  +  L++K  K   + + ++   +   
Sbjct: 563 HAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKECKLDRSFYHIMMKMFRNS 622

Query: 398 G---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HV 453
           G   + EK+L   K+A   V   +    L+  +Y+     G  + AE +L  L+  G  +
Sbjct: 623 GNHSKAEKLLGVMKEA--GVEPTIATMHLLMVSYSG---SGQPEEAEKVLDNLKVEGLPL 677

Query: 454 STEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMD 487
           ST  Y+S++  Y K G   + I  +  M+KD ++ D
Sbjct: 678 STLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPD 713



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+ ++   G     + YN +++       L++  ++  ++      PD+ TYN  ++   
Sbjct: 256 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 315

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  A + F +L+     PD ++Y++L   + +    +K     ++M K    K+ +
Sbjct: 316 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 375

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDE 339
            Y++++ +Y   G  D   +++   M L  +  DA  YT +I SL K    ++A  +  E
Sbjct: 376 TYNTIIHMYGKRGQHDLAFQLYSD-MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 434

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             +       R  + L+  Y    +   AE  ++ ++  GIKP +  + ++    L+  +
Sbjct: 435 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 494

Query: 400 MEKVLECFKKAIGSVRKWVPDHRL 423
             K ++ +++ +  +  + PDH L
Sbjct: 495 SGKAMKLYQEMV--LHSFKPDHAL 516


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  ++   QN     A  +M+ M + G       YN ++N    NGQL++
Sbjct: 284 PDQI----TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L Q + +   PD+ T+N  +AA  + N  E A     ++    + PD  +++ L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P  A    +EM+   C  + V Y++L+    ++G   + L + K M S     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I  L K    E+AE ++D+ +    + +    N L+       +++ A    
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           N+++++G++P   T+  +   Y K+G ++K
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKK 549



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+LN+ +   ++  +  +  E+  +   PDVVT+N  + A    +   TA     E+ 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +++TL   +++    E A      M +  C   +V  + L++ Y  +G  +
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L   ++ ++   + +   Y   ++ L +      A  + D         D    NI++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  QLE A+   N++V +G  P  TT+  L        ++E+ L+  ++   +V+ 
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV--TVKG 386

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             PD        N L + GD   A  L   ++N+G    E+ YN+L+      GK+
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 47/383 (12%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
            E +  +   PD  T + L+  +V+      A  +  +M E G     +  N ++N Y  
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G++ D +  + QE+     PD +TYN ++      +    A K    + +   DPD  +
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------------------- 287
           Y+ + +   K    E+A   L +M  R C  +   +++L++                   
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 288 -------LYT---------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
                  +YT          +G     LR++++M +     ++  Y  +I +L  LG+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 332 KAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           KA ++  + ES   TG PR     N ++     + ++E AE  ++++  +GI     T+ 
Sbjct: 444 KALDLLKDMES---TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  G  K  +++   E   + I       P++    +      +QGDI  A  +L T+ 
Sbjct: 501 TLIDGLCKDKKIDDAFELINQMISE--GLQPNNITYNSILTHYCKQGDIKKAADILETMT 558

Query: 449 -NAGHVSTEIYNSLLRTYAKAGK 470
            N   V    Y +L+    KAG+
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGR 581



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 142/337 (42%), Gaps = 21/337 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFF 130
            N ++  L    R + AL++      Q  +K VS D   + + ++ + K+     A   F
Sbjct: 359 FNTLIAALCTGNRLEEALDLAR----QVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E + +    PD  T + L+ +     K  +A  L++ M   G  +  + YN +++     
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            ++++  ++  ++  +  S + +T+N  +         + A +   ++    + P+ I+Y
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 534

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +++ + Y K    +KAA  L+ M       + V Y +L++     G     L++ + M  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----- 362
              +     Y  V+ SL +      A +++ E   +   G+P  P+ L    + R     
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV---GEP--PDALTYKIVFRGLCRG 649

Query: 363 -NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
              ++ A  F   +V KG  P ++++ +L  G L  G
Sbjct: 650 GGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T +  ++   QN     A  +M+ M + G       YN ++N    NGQL++
Sbjct: 192 PDQI----TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +L Q + +   PD+ T+N  +AA  + N  E A     ++    + PD  +++ L +
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 307

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P  A    +EM+   C  + V Y++L+    ++G   + L + K M S     
Sbjct: 308 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 367

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I  L K    E+AE ++D+ +    + +    N L+       +++ A    
Sbjct: 368 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 427

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           N+++++G++P   T+  +   Y K+G ++K
Sbjct: 428 NQMISEGLQPNNITYNSILTHYCKQGDIKK 457



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+LN+ +   ++  +  +  E+  +   PDVVT+N  + A    +   TA     E+ 
Sbjct: 57  YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 116

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +++TL   +++    E A      M +  C   +V  + L++ Y  +G  +
Sbjct: 117 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 176

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L   ++ ++   + +   Y   ++ L +      A  + D         D    NI++
Sbjct: 177 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 236

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  QLE A+   N++V +G  P  TT+  L        ++E+ L+  ++   +V+ 
Sbjct: 237 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV--TVKG 294

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             PD        N L + GD   A  L   ++N+G    E+ YN+L+      GK+
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 350



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 47/383 (12%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
            E +  +   PD  T + L+  +V+      A  +  +M E G     +  N ++N Y  
Sbjct: 112 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 171

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G++ D +  + QE+     PD +TYN ++      +    A K    + +   DPD  +
Sbjct: 172 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 231

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------------------- 287
           Y+ + +   K    E+A   L +M  R C  +   +++L++                   
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 291

Query: 288 -------LYT---------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
                  +YT          +G     LR++++M +     ++  Y  +I +L  LG+  
Sbjct: 292 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 351

Query: 332 KAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           KA ++  + ES   TG PR     N ++     + ++E AE  ++++  +GI     T+ 
Sbjct: 352 KALDLLKDMES---TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 408

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  G  K  +++   E   + I       P++    +      +QGDI  A  +L T+ 
Sbjct: 409 TLIDGLCKDKKIDDAFELINQMIS--EGLQPNNITYNSILTHYCKQGDIKKAADILETMT 466

Query: 449 -NAGHVSTEIYNSLLRTYAKAGK 470
            N   V    Y +L+    KAG+
Sbjct: 467 ANGFEVDVVTYGTLINGLCKAGR 489



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 142/337 (42%), Gaps = 21/337 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFF 130
            N ++  L    R + AL++      Q  +K VS D   + + ++ + K+     A   F
Sbjct: 267 FNTLIAALCTGNRLEEALDLAR----QVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 322

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E + +    PD  T + L+ +     K  +A  L++ M   G  +  + YN +++     
Sbjct: 323 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 382

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            ++++  ++  ++  +  S + +T+N  +         + A +   ++    + P+ I+Y
Sbjct: 383 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 442

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +++ + Y K    +KAA  L+ M       + V Y +L++     G     L++ + M  
Sbjct: 443 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 502

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----- 362
              +     Y  V+ SL +      A +++ E   +   G+P  P+ L    + R     
Sbjct: 503 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV---GEP--PDALTYKIVFRGLCRG 557

Query: 363 -NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
              ++ A  F   +V KG  P ++++ +L  G L  G
Sbjct: 558 GGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 188/417 (45%), Gaps = 12/417 (2%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDL 116
           +MRK   +G  + +Y  N ++   R+   YK A +V + M    ++   V+ +    LD+
Sbjct: 237 SMRK---DGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSL--LDV 291

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
             K R    A    + +      P   T ++L+ SYV++    EA  L E+M   G    
Sbjct: 292 YGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPD 351

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y  +++     G++D       E+ +N   P++ TYN  +     +         F 
Sbjct: 352 VITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFD 411

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++     PD ++++TL +++ +  L  + +   KEM+K      R  Y SL+S Y+  G
Sbjct: 412 EIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 471

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D+ + I+K+M+      + + Y  V+S+L + G +E+AE ++ E E++    D    +
Sbjct: 472 LFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYS 531

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            LL AY N  +L+  +S    +  + I+      + L     K   +    + F +    
Sbjct: 532 SLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLEL--R 589

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            R+   D  ++ A  +   + G +   E +L  ++ +  ++ST  YNSL+  Y++ G
Sbjct: 590 RRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLG 646



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 38/307 (12%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN    E   + ++M + G++     Y  +++ Y   G  D+  ++
Sbjct: 420 PDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEI 479

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            + + +    PD+ TYN  L+A A     E AEK F E++     PD +SYS+L   Y  
Sbjct: 480 YKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYAN 539

Query: 257 MELPEKAAT-----------------------------------TLKEMEKRTCRKNRVA 281
            +  +K  +                                      E+ +R C  +   
Sbjct: 540 AKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINV 599

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
            ++++S+Y   G   +V  I   M      ++ A Y  ++    +LG+ EK ENI  E +
Sbjct: 600 LNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIK 659

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           S     D    N ++ AY  + Q++ A   ++ +   G+ P   T+ +    Y+     E
Sbjct: 660 SSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFE 719

Query: 402 KVLECFK 408
           + ++  +
Sbjct: 720 EAIDLVR 726



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 158/361 (43%), Gaps = 50/361 (13%)

Query: 140 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQ 196
           PD    +AL+ +  +  +  +A A+  +M   G     + YN +L++Y        +V  
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 197 MLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           ++  ++K+  P D  TYN  ++ C  +   + A K F E++    +PD ++ ++L  +Y 
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K    ++A   LKEME+  C  + V Y+SL+S Y   G  +E  ++ ++M     + +  
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            YT ++S L + G+ + A           GT                         YN +
Sbjct: 354 TYTTLVSGLDRAGKIDAA----------IGT-------------------------YNEM 378

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLE 432
           +  G KP   T+  L   +  +G+  +++  F +   +   +VPD      + A + +  
Sbjct: 379 LRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSA--GFVPDVVTWNTLLAVFGQNG 436

Query: 433 EQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAE 489
              ++ G   +   ++ +G+V   + Y SL+ +Y++ G     + I +RM +  +  D  
Sbjct: 437 LDTEVSG---VFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDIS 493

Query: 490 T 490
           T
Sbjct: 494 T 494



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 125/265 (47%), Gaps = 5/265 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +  +  +AE L  +M         L Y+ +L+ Y +  +LDK+  +
Sbjct: 490 PDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSL 549

Query: 198 LQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            +++  ++  S + +   L L      N  +T EKAFLEL++ +   D    + + S+Y 
Sbjct: 550 SEDIYAERIESHNGLVKTLVLVNSKVNNLSDT-EKAFLELRRRRCSLDINVLNAMISIYG 608

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K  + +K    L  M++ +   +   Y+SL+ +Y+ +G  ++   I  ++ S  A+ +  
Sbjct: 609 KNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRY 668

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I +  + G+ ++A  ++ E +      D    NI + +Y+  +  E A      +
Sbjct: 669 SYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYM 728

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQM 400
           VT G KP   T+  +   Y   G++
Sbjct: 729 VTHGCKPNERTYNTILQEYCSHGRI 753



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 8/275 (2%)

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK-DEVL 299
           DPD  +Y+ L S   +      A    + M         V Y+ +L +Y+ +     EVL
Sbjct: 173 DPDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVL 232

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            +   M      ++   Y  +IS   +   +++A  ++DE  +     D    N LL  Y
Sbjct: 233 ALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
               + + A      +   G  P   T+  L   Y+K G +E+  +  ++    V+   P
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEM--EVKGIEP 350

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIV 476
           D    T   + L+  G ID A       LRN    +   YN+L++ +   GK P  +I+ 
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 477 ERMQKDNVQMDAET-QKVLKITSEMPV-SEVSSIF 509
           + ++      D  T   +L +  +  + +EVS +F
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVF 445


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 158/334 (47%), Gaps = 13/334 (3%)

Query: 87  YKHALEVCEWMELQY----DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDT 142
           +  A EV EW+ L++    + +++S   AV   L    +   + E F    P        
Sbjct: 202 WHRAFEVYEWLNLRHWYSPNARMLSTILAV---LGKANQEPLAVEVFTRAEPSVENTVKV 258

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL--DKVPQMLQE 200
            +A++  Y ++ K  + + L + M E G     + +N ++N  +  G++  +   ++L E
Sbjct: 259 YNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTE 318

Query: 201 LKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++++   PD++TYN  ++AC+  ++ E A   F ++     +PD  +Y+ + S+Y +  L
Sbjct: 319 VRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGL 378

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             KA     ++E R    + V+Y+S L  +   G  ++V  I ++M+ +    ++  Y  
Sbjct: 379 SGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNT 438

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    K G+ + A  +Y + +S     D     +L+ +    N++E A    + ++  G
Sbjct: 439 MIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTG 498

Query: 380 IKPCYTTWELLTWGYLKKG---QMEKVLECFKKA 410
           +KP   T+  L  GY K G   + E+  +C  ++
Sbjct: 499 VKPTLRTYSALICGYAKAGKPVEAEETFDCMLRS 532



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 123/283 (43%), Gaps = 9/283 (3%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+ ++   G     + YN +++       L++   +  ++   +  PD+ TYN  ++   
Sbjct: 315 LLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYG 374

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  AE+ F +L+     PD +SY++    + +    EK     +EM K    K+ +
Sbjct: 375 RCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEM 434

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++ +Y   G  D  L++++ M S     +   YT +I SL K  + E+A  +  E 
Sbjct: 435 TYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEM 494

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
            +       R  + L+  Y    +   AE  ++ ++  G +P    + ++   +L+  + 
Sbjct: 495 LNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEP 554

Query: 401 EKVLECFKKAIGSVRKWVPDHRL------ITAAYNKLEEQGDI 437
           ++ +  +K+ I      +P+H L           NK+E+ G +
Sbjct: 555 KRAMTFYKEMIHD--GIMPEHSLYELMLRTLGNANKVEDIGRV 595



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 115/273 (42%), Gaps = 4/273 (1%)

Query: 141  DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            D+ + LL + + + +  E   +++++ + GF         ML+ +   G + +V ++   
Sbjct: 851  DSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHG 910

Query: 201  LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            +K     P +  Y +              E    E+++    PD   ++++  +Y+ ++ 
Sbjct: 911  MKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDD 970

Query: 260  PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
              K     + +++     +   Y+ L+ +Y       E L +  +M ++  +     Y  
Sbjct: 971  FRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKS 1030

Query: 320  VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
            +++S  K    E+AE +++E +S     D    +I++  Y N      A+  ++ +  +G
Sbjct: 1031 LVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEG 1090

Query: 380  IKPCYTTWELLTWGYLKKGQ---MEKVLECFKK 409
            ++P   T  LL   Y   GQ    EKVL   K+
Sbjct: 1091 VEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKE 1123


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 130/276 (47%), Gaps = 7/276 (2%)

Query: 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           N FE  PD++    T +  ++   QN     A  +M+ M + G       YN ++N    
Sbjct: 284 NGFE--PDQI----TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 188 NGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           NGQL++   +L Q +++   PD+ T+N  + A  S N  E A     ++    + PD  +
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYT 397

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           ++ L +   K+  P+ A    +EM+   C  + V Y++L+    ++G   + L + K+M 
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
           S     +   Y  +I  L K    E+AE ++D+ +    + +    N L+       +++
Sbjct: 458 SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            A    ++++++G++P   T+  +   Y K+G ++K
Sbjct: 518 DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKK 553



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+LN+ +   ++  +  +  E+ ++   PDVVT+N  + A    +   TA     E+ 
Sbjct: 153 YNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            + + PD  +++TL   +++ E   KAA  +K  M +  C   +V  + L++ Y  +G  
Sbjct: 213 SSGVAPDETTFTTLMQGFVE-EGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRV 271

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++ L   ++ ++   + +   Y   ++ L + G    A  + D         D    NI+
Sbjct: 272 EDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIV 331

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       QLE A+   N++V +G  P  TT+  L        ++E+ L+  ++   +++
Sbjct: 332 VNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQV--TLK 389

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              PD        N L + GD   A  L   ++++G    E+ YN+L+      GK+
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKL 446



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 144/334 (43%), Gaps = 10/334 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++ Y +  +  +A   +++    GF    + YN  +N    NG +    +++  +
Sbjct: 257 TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVM 316

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   PDV TYN+ +         E A+    ++ +    PD  +++TL          
Sbjct: 317 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRL 376

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    +++  +    +   ++ L++    +G     LR++++M S     ++  Y  +
Sbjct: 377 EEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTL 436

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVT 377
           I +L  LG+  KA ++  E ES    G PR     N ++     + ++E AE  ++++  
Sbjct: 437 IDNLCSLGKLGKALDLLKEMES---AGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDL 493

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +GI     T+  L  G  K  +++   +   + I       P++    +      +QGDI
Sbjct: 494 QGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE--GLQPNNITYNSILTHYCKQGDI 551

Query: 438 DGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGK 470
             A  +L T+  N   V    Y +L+    KAG+
Sbjct: 552 KKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/347 (19%), Positives = 140/347 (40%), Gaps = 11/347 (3%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLD 115
           + +  E G        N ++  L    R + AL++      Q  +K +S D   + + ++
Sbjct: 348 LNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR----QVTLKGLSPDVYTFNILIN 403

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
            + K+     A   FE +      PD  T + L+ +     K  +A  L+++M   G  +
Sbjct: 404 ALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPR 463

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
             + YN +++      ++++  ++  ++  +  S + +T+N  +         + A +  
Sbjct: 464 STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLI 523

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            ++    + P+ I+Y+++ + Y K    +KAA  L+ M       + V Y +L++     
Sbjct: 524 SQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKA 583

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G     L++ + M     +     Y  VI SL +      A N++ E   +    D    
Sbjct: 584 GRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTY 643

Query: 353 NILLAAYI-NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            I+          +  A  F   +V KG  P ++++ +L  G L  G
Sbjct: 644 KIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 152/333 (45%), Gaps = 11/333 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQE 200
           TC  L+++Y  + +  +A  L  KM + G     + YN +LN+Y   G     V  +++ 
Sbjct: 197 TC--LINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEA 254

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++ +  +PD+ TYN  ++ C   +  E A   F ++K     PD ++Y+ L  ++ K   
Sbjct: 255 MRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRR 314

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
           P++A   L+EME        V Y+SL+S Y   G  +E L +  +M+    K +   YT 
Sbjct: 315 PQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTT 374

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++S   K G+ + A  ++ E  ++    +    N L+  + NR +       ++ +    
Sbjct: 375 LLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCN 434

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
             P   TW  L   + + G   +V   FK  K  G V +    + LI+ AY++    G  
Sbjct: 435 CSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS-AYSRC---GSF 490

Query: 438 DGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG 469
           D A  +  ++  AG V     YN++L   A+ G
Sbjct: 491 DQAMAVYKSMLEAGVVPDLSTYNAVLAALARGG 523



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 133/307 (43%), Gaps = 49/307 (15%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
           AVHL    K+ G +         PDK+    T +ALL  + ++++  EA  ++++M   G
Sbjct: 283 AVHLFQQMKLEGFT---------PDKV----TYNALLDVFGKSRRPQEAMKVLQEMEANG 329

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAE 229
           F    + YN +++ Y   G L++   +  Q + K   PDV TY   L+        + A 
Sbjct: 330 FSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAI 389

Query: 230 KAFLELKKT-----------------------------------KIDPDWISYSTLTSLY 254
           + FLE++                                        PD ++++TL +++
Sbjct: 390 QVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVF 449

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +  +  + +   KEM++      R  +++L+S Y+  G  D+ + ++K M+      + 
Sbjct: 450 GQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDL 509

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
           + Y  V+++L + G +E++E +  E E      +    + LL AY N  ++E   +F   
Sbjct: 510 STYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEE 569

Query: 375 LVTKGIK 381
           + +  ++
Sbjct: 570 IYSGSVE 576



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 151/350 (43%), Gaps = 10/350 (2%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           + +G  +  Y    ++       RY+ A+ +   M+ Q         Y V L++  K+ G
Sbjct: 185 QNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQ-QDGCNPTLITYNVVLNVYGKM-G 242

Query: 123 L--SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           +  S+     E +  +   PD  T + L+    +     EA  L ++M   GF    + Y
Sbjct: 243 MPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTY 302

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +L+++  + +  +  ++LQE++ N  SP  VTYN  ++A A     E A     ++  
Sbjct: 303 NALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVH 362

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I PD  +Y+TL S + K    + A     EM    C+ N   +++L+ ++ N G   E
Sbjct: 363 KGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAE 422

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           +++++  +       +   +  +++   + G   +   I+ E +      +    N L++
Sbjct: 423 MMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS 482

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVL 404
           AY      + A + Y  ++  G+ P  +T+  +     + G   Q EKVL
Sbjct: 483 AYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVL 532



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           SK   L   E  F  L  +   PD  T +A+L  Y + +  A+A  ++  M E  F    
Sbjct: 590 SKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSL 649

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++ +Y  +    K  ++L+E L+K   PD ++YN  + A       + A + F E
Sbjct: 650 TTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSE 709

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K + + PD ++Y+T  + Y    +  +A   ++ M K+ C+ ++  Y+S++  Y  +  
Sbjct: 710 MKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQ 769

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           + E     K + +L   ++  E + ++  + K+
Sbjct: 770 RHEANSFVKNLSNLDPHVSKEEESRLLERIAKM 802



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 11/287 (3%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   ++   + ++M   GF+     +N +++ Y   G  D+   +
Sbjct: 437 PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAV 496

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +  L+    PD+ TYN  LAA A     E +EK   E++  +  P+ +SYS+L   Y  
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYAN 556

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  E+     +E+   +   + V   +L+ + +     D ++   +  + L  +    +
Sbjct: 557 GKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSK---SDLLIETERAFLELRRRGISPD 613

Query: 317 YTCVISSLVKLGE---FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            T + + L   G      KA  I +       T      N L+  Y      + +E    
Sbjct: 614 ITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILR 673

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
            ++ KG+KP   ++  + + Y + G+M++    F +   S    VPD
Sbjct: 674 EVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSA--LVPD 718



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 17/270 (6%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +     ++E ++ +M +       L Y+ +L+ Y +  +++++   
Sbjct: 507 PDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAF 566

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKET----AEKAFLELKKTKIDPDWISYSTLTSL 253
            +E+    S  V T+ + L      N K       E+AFLEL++  I PD  + + + S+
Sbjct: 567 AEEI---YSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSI 623

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT---NMGYKDEVLR-IWKKMMSLF 309
           Y + ++  KA   L  M +     +   Y+SL+ +Y+   N    +E+LR + +K M   
Sbjct: 624 YGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGM--- 680

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            K +   Y  VI +  + G  ++A  I+ E +  +   D    N  +A Y   +    A 
Sbjct: 681 -KPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAI 739

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                ++ +G KP   T+  +   Y K  Q
Sbjct: 740 DVVRYMIKQGCKPDQNTYNSIVDWYCKLDQ 769



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 77/174 (44%), Gaps = 5/174 (2%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ML++Y     + K  ++L  + +   +P + TYN  +   +   + + +E+   E+ +
Sbjct: 618 NAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLE 677

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             + PD ISY+T+   Y +    ++A+    EM+      + V Y++ ++ Y       E
Sbjct: 678 KGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAE 737

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            + + + M+    K +   Y  ++    KL +  +A +      ++    DP V
Sbjct: 738 AIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNL----DPHV 787


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 146/315 (46%), Gaps = 10/315 (3%)

Query: 105 LVSGDYAVHLDLISK-IRGLSSAENF-----FENLPDKMRGPDTCS--ALLHSYVQNKKS 156
           +V+ DY   + L +K I+G  ++ N         + +K   PD  +  A++  + +  + 
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRI 60

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNL 214
             A+ ++++M   GF    + +N M+  +   G++D   ++ +EL K  N  P ++TY +
Sbjct: 61  ESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            + A   +   + A K   E+    ++PD  +Y+ +T    K    ++A   ++ +  R 
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG 180

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           C+ + + Y+ LL    N G  DE  +   ++ S   + N   Y+ +ISSL + G+ E++ 
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           N+    +    T D    + L+AA+    +L+MA  F + ++  G  P    +  +    
Sbjct: 241 NLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAAL 300

Query: 395 LKKGQMEKVLECFKK 409
            K G  +  +E F K
Sbjct: 301 CKNGNGDHAVEIFGK 315



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ S  ++ K  E+  L++ M E G       Y+ ++  +   G+LD   + L  +
Sbjct: 222 TYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCM 281

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +   PD+V YN  +AA     + + A + F +L +    P+  SY+T+ S        
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDR 341

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   + +M  +    + + Y+SL+S     G  DE + +   M+S   + N   Y  V
Sbjct: 342 YRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTV 401

Query: 321 ISSLVKLGEFEKA 333
           +  L K    + A
Sbjct: 402 LLGLCKAHRIDDA 414



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQML-Q 199
           + ++ +  +N     A  +  K+ E G   CP     YN ML+   S+G   +   M+ Q
Sbjct: 294 NTIMAALCKNGNGDHAVEIFGKLDEVG---CPPNVSSYNTMLSALWSSGDRYRALGMISQ 350

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L K   PDV+TYN  ++        + A     ++   +  P+ +SY T+     K   
Sbjct: 351 MLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHR 410

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLL 286
            + A   L  M +  C+ N   Y+ L+
Sbjct: 411 IDDAIEVLAAMIENGCQPNETTYTLLI 437



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           G  D    N +++ +   N++E A++  +R+  KG  P   T  ++   +  KG+++  L
Sbjct: 40  GKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLAL 99

Query: 405 ECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
           + F++ +   + +  +  + ++  AY     +G ID A  LL  + + G    T  YN +
Sbjct: 100 KVFEELLKDNNCKPTLITYTILIEAYIL---EGGIDEALKLLDEMLSRGLEPDTFTYNVI 156

Query: 462 LRTYAKAGKM 471
            R   K GK+
Sbjct: 157 TRGLCKEGKV 166


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI---SNGQLDKVPQMLQELK 202
           L+ +Y +  +  EAE LM +M E G       YN ++  Y+      Q      +++E++
Sbjct: 215 LIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEME 274

Query: 203 KNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +   PDVVT+ + L A   +   E AE+ F  +K   + P+  SY+ L + Y +   PE
Sbjct: 275 ASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPE 334

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KAA   + + K+        Y++LL  Y   G  + V  +WK M           Y  ++
Sbjct: 335 KAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTIL 394

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            +  K G +++A ++ +E+++     D  V N+LL +Y+   +   A      + T G  
Sbjct: 395 DAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFL 454

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           P   T+  L +G+L+     K L+  ++ +   R  +PD
Sbjct: 455 PDSFTYCTLIYGFLRVRDQTKALKYHREMMN--RGQLPD 491



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 116/271 (42%), Gaps = 11/271 (4%)

Query: 207 PDVVTYNLWL-AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           PD VT+++ + +A       +     + ++ +  I P    + T    +      ++A  
Sbjct: 136 PDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALL 195

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
              EMEK     N V Y+ L+  Y  +G  +E   +  +M     + N   Y  +I+  +
Sbjct: 196 ITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYL 255

Query: 326 KLG---EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +     +F  AE + +E E+     D     +LL AY +    E AE  +NR+  +G++P
Sbjct: 256 EAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQP 315

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV--PDHRLITAAYNKLEEQGDIDGA 440
              ++  L   Y ++   EK    F+     +RK    P     TA  +     GD++  
Sbjct: 316 NSYSYTALINAYAERRCPEKAARAFEM----IRKQGVNPTVETYTALLDAYRRAGDLEMV 371

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           + +  +++  G V+T + Y ++L  + K G+
Sbjct: 372 QAVWKSMKVEGCVATRVTYMTILDAFQKQGR 402



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 7/241 (2%)

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTL-KEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           ++ PD +++S L +  +K     K    L ++M +R    +   + + +  + + G   E
Sbjct: 133 EVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKE 192

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
            L I  +M  L    N   Y  +I +  ++G+ E+AE +  E        +    N L+ 
Sbjct: 193 ALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALIT 252

Query: 358 AYIN---RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            Y+    + Q  +AE     +   G+ P   T+ +L   Y  +G  E+  + F +     
Sbjct: 253 GYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRM--KA 310

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL 473
           R   P+    TA  N   E+   + A      +R  G + + E Y +LL  Y +AG + +
Sbjct: 311 RGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEM 370

Query: 474 I 474
           +
Sbjct: 371 V 371



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +T +ALL +Y +       +A+ + M   G +   + Y  +L+ +   G+  +   +++E
Sbjct: 353 ETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEE 412

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            K +   PD++ YN+ L +         A    LE+K     PD  +Y TL   ++++  
Sbjct: 413 FKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGFLRVRD 472

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
             KA    +EM  R    +   Y+ L ++
Sbjct: 473 QTKALKYHREMMNRGQLPDPKTYAKLRAI 501


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 175/414 (42%), Gaps = 15/414 (3%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           GH       N ++  L        A+ V + ME Q   K     Y   +D + K R ++ 
Sbjct: 193 GHEPDVISYNTLINGLCNSGNTNMAVHVFKKME-QNGCKPNVVTYNTIIDSLCKDRLVND 251

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A +F   +  +   PD  T ++++H      +  EA  L ++M + G     + YN +++
Sbjct: 252 AMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
               +  ++     L E+  +   PDVVTY   L           A + F ++++    P
Sbjct: 312 SLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKP 371

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D ++Y+T+     K  L   A   L EM  R    N V YS++L  + N+G  DE  +++
Sbjct: 372 DVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M+      N   ++ ++  L + G   +A  +++         +    N L+  Y  R
Sbjct: 432 KEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLR 491

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            ++  A   +  +V KG  P   ++ +L  GY    +M+K      +   SV+K  P+  
Sbjct: 492 CKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQM--SVKKLTPN-- 547

Query: 423 LITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             T  YN + +     G +  A+ L   + ++G + T + Y+ LL    K G +
Sbjct: 548 --TVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHL 599



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 174/405 (42%), Gaps = 11/405 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           E  + +  + K+K+Y   + +C  M+L + +        + ++ + ++  +  A + +  
Sbjct: 95  EFGKFLGSIAKMKQYSTVVYLCNQMDL-FGVTHTVYSLNILINCLCRLNHVDFAVSVWGK 153

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      PD  T + L++      K   A  L  +M   G     + YN ++N   ++G 
Sbjct: 154 MFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGN 213

Query: 191 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +    + +++++N   P+VVTYN  + +         A     E+    I PD I+Y++
Sbjct: 214 TNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNS 273

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-SLYTNMGYKDEVLRIWKKMMSL 308
           +      +    +A    K ME+  C+ + V Y+ ++ SLY +    D       +M+  
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAA-DFLSEMVDQ 332

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               +   YT ++  L  LG+  +A  ++ + E      D    N ++ +      +  A
Sbjct: 333 GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDA 392

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
             F + +V +GI P   T+  +  G+   GQ+++  + FK+ +G  R  +P+    +   
Sbjct: 393 MEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG--RNVMPNTLTFSILV 450

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           + L ++G +  A  +  T+   G V   I  YN+L+  Y    KM
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKG-VEPNIYTYNALMNGYCLRCKM 494



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 134/303 (44%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K R ++ A  F   + D+   P+  T S +LH +    +  EA  L ++M 
Sbjct: 376 YNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMV 435

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
               +   L ++ +++     G + +   + + + +K   P++ TYN  +     +    
Sbjct: 436 GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMN 495

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F  +      PD  SY+ L + Y      +KA   L +M  +    N V Y++++
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                +G   +   ++KKM S         Y+ +++ L K G  ++A  ++   +     
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  +  IL+       +LE+A+  +++L   GI+P   T+ ++  G LK+G  ++  E 
Sbjct: 616 PDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYEL 675

Query: 407 FKK 409
           F+K
Sbjct: 676 FRK 678



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 17/264 (6%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A  +F  + +    P  + +        KM+          +M+         + + L
Sbjct: 75  DDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNIL 134

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++    + + D  + +W KM  L  + +   +T +I+ +   G+ + A  +Y+E      
Sbjct: 135 INCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGH 194

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L+    N     MA   + ++   G KP   T+  +     K   +   ++
Sbjct: 195 EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMD 254

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRT 464
              + +G  R   PD     +  + L   G ++ A  L   + +N        YN     
Sbjct: 255 FLSEMVG--RGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYN----- 307

Query: 465 YAKAGKMPLIIVERMQKDNVQMDA 488
                    II++ + KD +  DA
Sbjct: 308 ---------IIIDSLYKDRLVNDA 322


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 137/315 (43%), Gaps = 7/315 (2%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLD---KVPQMLQELKKNTSPDVVTYNLWLA 217
            ++E M   G     + YN +++     G +D    +    Q LK    PD  T+N  LA
Sbjct: 2   GVLESMKGAGLRPTTVSYNAVIDA-CGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
           AC+     E A   F E+    I  D  +Y+T      K    E A   L +ME +  + 
Sbjct: 61  ACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKP 120

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YS+L+  Y+ +   +E L++ +KM S+  +++   Y  +++  VK G++ +  N+ 
Sbjct: 121 NVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVC 180

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           DE E +    D    N L+  Y  + +L++       +  +G+ P   T+  L   Y K 
Sbjct: 181 DEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKA 240

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTE 456
           G        +     S  K  PD  L ++  + L + G I+ A  LL  +   G   +  
Sbjct: 241 GMHGDAFNVYLDFKESGLK--PDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVV 298

Query: 457 IYNSLLRTYAKAGKM 471
            YN+++  + K+  M
Sbjct: 299 TYNAIIDAFGKSKVM 313



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 12/225 (5%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK---IRGLSSAENFFENL 133
           I R++     +  A+  C  MEL   + L      V  ++++    I G S  E + E L
Sbjct: 83  IGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEAL 142

Query: 134 P--DKMRG-----PDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
              +KM+         C + LL  YV+  K AE   + ++M E G  K  + YN ++N Y
Sbjct: 143 KLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGY 202

Query: 186 ISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G+LD V  ++Q++ K+  +P V+TY+  +   +       A   +L+ K++ + PD 
Sbjct: 203 GKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDV 262

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           + +S+      K  L E A + L +M +   + N V Y++++  +
Sbjct: 263 VLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAF 307



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 16/228 (7%)

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE-VLRIWKKMMSLFAKMNDAEYTCVISSL 324
            L+ M+    R   V+Y++++      G      L  +++M+      +   +  ++++ 
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC 62

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            ++G  E A  ++DE   +    D    N  + A      +E+A      +  KG+KP  
Sbjct: 63  SRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNV 122

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDI----D 438
            T+  L  GY K  + E+ L+  +K + S+R  +    +  + A Y K  +  +I    D
Sbjct: 123 VTYSTLIDGYSKLEKYEEALKLCEK-MKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCD 181

Query: 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL--IIVERMQKDNV 484
             E L +         T  YNSL+  Y K G++ +  I+V+ M+K  V
Sbjct: 182 EMEELGI------EKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGV 223


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 156/362 (43%), Gaps = 6/362 (1%)

Query: 44   RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YD 102
            RL    Y   +A I  R++ E G   +    N ++  + +L R K A  +   MEL+ Y 
Sbjct: 662  RLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYT 721

Query: 103  IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAE 160
              ++S  Y+  ++   +   L       E +  K   P++    +++    +  K AEAE
Sbjct: 722  PDVIS--YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 779

Query: 161  ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAAC 219
                +M   G L   + Y  +++ +   G +    +   E+  ++ +PDV+TY   ++  
Sbjct: 780  EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 839

Query: 220  ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                D   A K F E+    ++PD ++++ L + Y K    + A      M +  C  N 
Sbjct: 840  CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 899

Query: 280  VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            V Y++L+      G  D    +  +M  +  + N   Y  +++ L K G  E+A  +  E
Sbjct: 900  VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 959

Query: 340  WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +E+     D      L+ AY    +++ A+     ++ KG++P   T+ +L  G+   G 
Sbjct: 960  FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 1019

Query: 400  ME 401
            +E
Sbjct: 1020 LE 1021



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 5/307 (1%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            Y   +D   K   + +A  FF  +  +   PD  T +A++  + Q     EA  L  +M 
Sbjct: 797  YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 856

Query: 168  ECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
              G     + +  ++N Y   G + D        ++   SP+VVTY   +     + D +
Sbjct: 857  CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 916

Query: 227  TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            +A +   E+ K  + P+  +Y+++ +   K    E+A   + E E      + V Y++L+
Sbjct: 917  SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 976

Query: 287  SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
              Y   G  D+   I K+M+    +     +  +++     G  E  E + + W    G 
Sbjct: 977  DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN-WMLAKGI 1035

Query: 347  G-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
              +    N L+  Y  RN L+ A + Y  + ++G+ P   T+E L  G+ K   M++   
Sbjct: 1036 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 1095

Query: 406  CFKKAIG 412
             F++  G
Sbjct: 1096 LFQEMKG 1102



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 123/303 (40%), Gaps = 3/303 (0%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            Y   +    +I  +  A   F  +  K   PD  T + L++ Y +     +A  +   M 
Sbjct: 832  YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 891

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
            + G     + Y  +++     G LD   ++L E+ K    P++ TYN  +       + E
Sbjct: 892  QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 951

Query: 227  TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             A K   E +   ++ D ++Y+TL   Y K    +KA   LKEM  +  +   V ++ L+
Sbjct: 952  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLM 1011

Query: 287  SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            + +   G  ++  ++   M++     N   +  ++         + A  IY +  S    
Sbjct: 1012 NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 1071

Query: 347  GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
             D +    L+  +     ++ A   +  +  KG     +T+ +L  G+LK+ +  +  E 
Sbjct: 1072 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 1131

Query: 407  FKK 409
            F +
Sbjct: 1132 FDQ 1134


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 164/377 (43%), Gaps = 25/377 (6%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           GD    LDL+ K+  +S        +P+ +      SA++ S  ++ + ++A+ L  +M 
Sbjct: 233 GDTVSALDLLRKMEEISHI------IPNVV----IYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           E G       YN M+  + S+G+     Q+LQE L++  SPDVVTYN  + A   +    
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE+ + E+    I P+ I+YS++   + K    + A      M  + C  N + +++L+
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y      D+ + +  +M       +   Y  +I     +G+   A ++  E  S    
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVT-----------KGIKPCYTTWELLTWGYL 395
            D    + LL    +  +L+ A   +  +              G++P   T+ +L  G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
            +G+  +  E +++     R  VPD    ++  + L +Q  +D A  +  ++ +      
Sbjct: 523 NEGKFLEAEELYEEM--PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 456 EI-YNSLLRTYAKAGKM 471
            + + +L+  Y KAG++
Sbjct: 581 VVTFTTLINGYCKAGRV 597



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 178/422 (42%), Gaps = 36/422 (8%)

Query: 54  SAAITMRKWKEEGHTVHKYEL-NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           SA   +RK +E  H +    + + I+  L K  R+  A  +  + E+Q        +  +
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNL--FTEMQ--------EKGI 286

Query: 113 HLDLI---SKIRGL------SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
             DL    S I G       S AE   + + ++   PD  T +AL++++V+  K  EAE 
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEE 346

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L ++M   G +   + Y+ M++ +    +LD    M   +  K  SP+++T+N  +    
Sbjct: 347 LYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                +   +   E+ +T +  D  +Y+TL   +  +     A   L+EM       + V
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKM------MSLFAKMNDAE-----YTCVISSLVKLGE 329
              +LL    + G   + L ++K M      +      N  E     Y  +IS L+  G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           F +AE +Y+E        D    + ++     +++L+ A   ++ + +K   P   T+  
Sbjct: 527 FLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 586

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           L  GY K G+++  LE F +     R  V +            + G+I+GA  +   + +
Sbjct: 587 LINGYCKAGRVDDGLELFCEM--GRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 450 AG 451
           +G
Sbjct: 645 SG 646



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 44/339 (12%)

Query: 175 PLP----YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
           PLP    +  ++ + +   + D V  + Q++ +K    D+ ++ + +    S +    A 
Sbjct: 75  PLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFAL 134

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F ++ K  + PD ++++TL       +   +A     +M + TCR N V +++L++  
Sbjct: 135 STFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGL 194

Query: 290 TNMGYKDEVLRIWKKMM----------------------------SLFAKM--------N 313
              G   E + +  +MM                             L  KM        N
Sbjct: 195 CREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPN 254

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y+ +I SL K G    A+N++ E +      D    N ++  + +  +   AE    
Sbjct: 255 VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            ++ + I P   T+  L   ++K+G+  +  E + + +   R  +P+    ++  +   +
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML--PRGIIPNTITYSSMIDGFCK 372

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           Q  +D AEH+   +   G     I +N+L+  Y  A ++
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/246 (16%), Positives = 105/246 (42%), Gaps = 2/246 (0%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A   F ++ +++  P  + +  L  + ++ME P+   +  ++ME++  R +  +++ L
Sbjct: 61  EDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 120

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + +       L  + K+  L    +   +  ++  L       +A N++ +    + 
Sbjct: 121 IKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTC 180

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +      L+       ++  A +  +R++  G++P   T+  +  G  K G     L+
Sbjct: 181 RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALD 240

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +K +  +   +P+  + +A  + L + G    A++L   ++  G       YNS++  
Sbjct: 241 LLRK-MEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 465 YAKAGK 470
           +  +G+
Sbjct: 300 FCSSGR 305


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 152/352 (43%), Gaps = 6/352 (1%)

Query: 54   SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAV 112
            +A I  R++ E G   +    N ++  + +L R   A  +   MEL+ Y   ++S  Y+ 
Sbjct: 652  TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVIS--YST 709

Query: 113  HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
             ++   +   L       E +  K   P+  T  +++    +  K AEAE    +M   G
Sbjct: 710  VINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQG 769

Query: 171  FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
             L   + Y  +++ +   G +    +   E+  ++ +PDV+TY   ++      D   A 
Sbjct: 770  ILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 829

Query: 230  KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
            K F E+    ++PD I+++ L + Y K    + A      M +  C  N V Y++L+   
Sbjct: 830  KLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 290  TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
               G  D    +  +M  +  + N   Y  +++ L K G  E+A  +  E+E+     D 
Sbjct: 890  CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 949

Query: 350  RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
                 L+ AY    +++ A+     ++ KG++P   T+ +L  G+   G +E
Sbjct: 950  VTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLE 1001



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 149/358 (41%), Gaps = 6/358 (1%)

Query: 59   MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
            + K K++G   + Y    I+  L ++ +   A E    M  Q  I   +  Y   +D   
Sbjct: 727  IEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ-GILPDTIVYTTLVDGFC 785

Query: 119  KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
            K   + +A  FF  +  +   PD  T +A++  + Q     EA  L  +M   G     +
Sbjct: 786  KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDII 845

Query: 177  PYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
             +  ++N Y   G + D        ++   SP+VVTY   +     + D ++A +   E+
Sbjct: 846  TFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 905

Query: 236  KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
             K  + P+  +Y+++ +   K    E+A   + E E      + V Y++L+  Y   G  
Sbjct: 906  WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 965

Query: 296  DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI 354
            D+   I  +M+    +     +  +++     G  E  E + + W    G   +    N 
Sbjct: 966  DKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN-WMLAKGIAPNATTFNC 1024

Query: 355  LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            L+  Y  RN L+ A + Y  + ++G++P   T+E L  G+     M++    F++  G
Sbjct: 1025 LVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKG 1082



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 8/387 (2%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
            Y + +  + ++  ++ A +    +  K   PD  S   +++ Y +  +  +   L+EKM 
Sbjct: 672  YNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMK 731

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
            + G       Y  ++ L     +L +  +   E+  +   PD + Y   +     + D  
Sbjct: 732  QKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIR 791

Query: 227  TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             A K F E+    I PD ++Y+ + S + ++    +A     EM  R    + + ++ L+
Sbjct: 792  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851

Query: 287  SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            + Y   G+  +  R+   M+      N   YT +I  L K G+ + A  +  E   I   
Sbjct: 852  NGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 911

Query: 347  GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
             +    N ++        +E A          G+     T+  L   Y K G+M+K  E 
Sbjct: 912  PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 971

Query: 407  FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTY 465
              + +G  +   P         N     G ++  E LL  +   G   +   +N L++ Y
Sbjct: 972  LTEMLG--KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 466  AKAG--KMPLIIVERMQKDNVQMDAET 490
                  K    I + M    V+ D +T
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVEPDGKT 1056



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 123/303 (40%), Gaps = 3/303 (0%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            Y   +    +I  +  A   F  +  +   PD  T + L++ Y +     +A  +   M 
Sbjct: 812  YTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMI 871

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
            + G     + Y  +++     G LD   ++L E+ K    P++ TYN  +       + E
Sbjct: 872  QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 931

Query: 227  TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             A K   E +   ++ D ++Y+TL   Y K    +KA   L EM  +  +   V ++ L+
Sbjct: 932  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991

Query: 287  SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            + +   G  ++  ++   M++     N   + C++         + A  IY +  S    
Sbjct: 992  NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE 1051

Query: 347  GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
             D +    L+  + N   ++ A   +  +  KG     +T+ +L  G+ K+ +  +  E 
Sbjct: 1052 PDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREI 1111

Query: 407  FKK 409
            F +
Sbjct: 1112 FDQ 1114



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 167/405 (41%), Gaps = 20/405 (4%)

Query: 71  KYELNRIVRELRKLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           K++ + ++  L K+K  Y+  L+  +W   + D  L S    +HL + SK   L  A++ 
Sbjct: 507 KFKTDHLIWVLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASK--DLKVAQSL 564

Query: 130 FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
             +  ++ +       +  S+VQ       + L+    + G    P  ++    + +  G
Sbjct: 565 ISSFWERPK-----LNVTESFVQF-----FDLLVYTYKDWG--SDPRVFDVFFQVLVEFG 612

Query: 190 QLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQ-NDKETAEKAFLELKKTKIDPDWISY 247
            L +  ++ ++ L       V + N++LA  +   N   TA   F E  +  +  +  SY
Sbjct: 613 MLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASY 672

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + +     ++    +A   L  ME +    + ++YS++++ Y   G  D+V ++ +KM  
Sbjct: 673 NIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQ 732

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              K N   Y  +I  L ++ +  +AE  + E        D  V   L+  +  R  +  
Sbjct: 733 KGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRA 792

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A  F+  + ++ I P   T+  +  G+ + G M +  + F + +   R   PD    T  
Sbjct: 793 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEML--CRGLEPDIITFTEL 850

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            N   + G I  A  +   +  AG     + Y +L+    K G +
Sbjct: 851 MNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 895


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 166/381 (43%), Gaps = 12/381 (3%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G       F  L +K   P   TC+ LL S V+  +   +  + + M  CG       ++
Sbjct: 142 GFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFS 201

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            M+N + + G++D   ++ ++++K   +P+VVTYN  +         + A +   +++K 
Sbjct: 202 TMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE 261

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           ++ P  ++Y  L +  +K+E  ++A   LKEM  R    N V Y++L+  Y  +G     
Sbjct: 262 RVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTA 321

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           L+I   M+S     N      +I    K  + E AE++ +E  +  G  +      ++  
Sbjct: 322 LQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHR 381

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRK 416
              + + + A  F   ++ +  KP      LL  G  + G+  + +E + + +  G    
Sbjct: 382 LCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAAN 441

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PL 473
            V  + LI    + L E G  + A  LL  +   G V   I YN+L+    K GK+    
Sbjct: 442 TVTSNALI----HGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGF 497

Query: 474 IIVERMQKDNVQMDAETQKVL 494
            + E M +  +Q D  T  +L
Sbjct: 498 KLKEEMVRRGIQPDMYTYNML 518



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 3/264 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +  +  K  E   L E+M   G       YN +L+   + G++++   +  E KK
Sbjct: 481 NTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKK 540

Query: 204 NTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N + PD  TY + +      N  E  EK F E+   KI+ + + Y TL   Y +     +
Sbjct: 541 NGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMRE 600

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     +M  R   +    YSSL+   +N+G  D   ++  +M       N   YT +I 
Sbjct: 601 AFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIG 660

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIK 381
              KLG+  K ++I  E  SI+     ++   I++  +     ++ A    N +  KGI 
Sbjct: 661 GYCKLGQMHKVDSILQEM-SINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV 719

Query: 382 PCYTTWELLTWGYLKKGQMEKVLE 405
           P   T+  LT G+ K+G+ME+ L+
Sbjct: 720 PDAVTYNALTNGFCKEGKMEEALK 743



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 168/395 (42%), Gaps = 16/395 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   +I  +S+A    +++      P+  TC++L+  Y ++ +   AE L+E+M 
Sbjct: 305 YNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
             G +     +  +++      + D     + E L +N  P+     L ++       + 
Sbjct: 365 TGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQS 424

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + +  L +     + ++ + L     +    E+AA  LKEM +R    + ++Y++L+
Sbjct: 425 EAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLI 484

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  +E  ++ ++M+    + +   Y  ++  L  +G+ E+A  ++ E +     
Sbjct: 485 LACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNF 544

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D     I++  Y   N++E  E  +  +VT  I+     +  L   Y + G M    E 
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMR---EA 601

Query: 407 FKKAIGSVRKWVPDHRLITAAYNK----LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSL 461
           F+       + +P     +A Y+     L   G +D A  LL  +R  G     + Y +L
Sbjct: 602 FRLRDDMRSRGIPQ---TSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTAL 658

Query: 462 LRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           +  Y K G+M  +  I++ M  +NV  +  T  ++
Sbjct: 659 IGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIM 693


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 160/395 (40%), Gaps = 46/395 (11%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           +++   QN +S EA  L+E+M   G       Y  ++  +   G +    + L+++ K N
Sbjct: 459 MINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKAN 518

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD+  YN  +   ++    E AE+ + +++K  + PD  +YS L   Y K    EKA 
Sbjct: 519 VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKAD 578

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS----------------- 307
             L++M     + N   Y+ LL  Y      ++V  I + M+                  
Sbjct: 579 QLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNL 638

Query: 308 --------LFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                    F  + + E          Y+ +IS L K+ + EKA  + DE          
Sbjct: 639 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGI 698

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N L+  +     +  A + ++ ++ KG+ P   T+  L  G  K G +    + +K+
Sbjct: 699 VCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKE 758

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            +   R   PD  +         +  D++ A  L   + N G+ +  ++N+L+  + K G
Sbjct: 759 MLD--RGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRG 816

Query: 470 KMPLIIVERMQKDNVQMDAE----TQKVLKITSEM 500
           K+     E  +  +V MD E     Q V K+ SE 
Sbjct: 817 KLQ----ETEKLLHVMMDREIVPNAQTVEKVVSEF 847



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 23/378 (6%)

Query: 112 VHLDLI---SKIRGLSS------AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
           VH DL    S I+GLS+      AE ++  +  +   PD  T S L+H Y +     +A+
Sbjct: 519 VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKAD 578

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAAC 219
            L+ +M   G       Y  +L  Y  +   +KV  +LQ  L     PD   Y + +   
Sbjct: 579 QLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNL 638

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
           +   + E A     E++K  + PD   YS+L S   K+   EKA   L EM K       
Sbjct: 639 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGI 698

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++L+  +   G       ++  +++     N   YT +I    K G+   A ++Y E
Sbjct: 699 VCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKE 758

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   D  V N+L     +   LE A      +  +G     + +  L  G+ K+G+
Sbjct: 759 MLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAN-VSLFNTLVHGFCKRGK 817

Query: 400 M---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL--RNAGHVS 454
           +   EK+L          R+ VP+ + +    ++  + G +  A  +   L  + A   +
Sbjct: 818 LQETEKLLHVMMD-----REIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSA 872

Query: 455 TEIYNSLLRTYAKAGKMP 472
           T+ ++ L       G +P
Sbjct: 873 TDRFSLLFTDMINKGLIP 890



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 4/308 (1%)

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQND 224
           M   G L     Y+  +  +      D   ++ +E+++ + + + VTYN+ ++       
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            E A     E+    + PD  +Y  L +   K    ++A   L EM     + N V Y +
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+  +   G   E   I K+M+S   + N   Y  +I  L K+G+  +A  +  E   + 
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N L+  +  ++  + A    N +   GI P   ++ ++  G  + G+ ++  
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
              ++ I    K  P+  +         ++G+I  A   L  +  A  H     YNSL++
Sbjct: 474 NLLEEMISEGLK--PNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIK 531

Query: 464 TYAKAGKM 471
             +  G+M
Sbjct: 532 GLSTVGRM 539


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/460 (21%), Positives = 184/460 (40%), Gaps = 59/460 (12%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLD 115
             + +E G+ V  +    ++R   +  R   AL + + M+   L  DI L    Y V +D
Sbjct: 221 FHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVL----YNVCID 276

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
              K   +  A  FF  +      PD  T ++++    +  +  EA  + E+M +   + 
Sbjct: 277 CFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVP 336

Query: 174 CPLPYNHMLNLYISNGQLDK-------------VPQML---------------------- 198
           C   YN M+  Y S G+ D+             +P ++                      
Sbjct: 337 CAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTF 396

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           +E+KK+ +P++ TYN+ +       + E A K    +K+  + P+ ++ + +     K +
Sbjct: 397 EEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             ++A +  + M  + C  + V + SL+      G  D+  R++++M+      N   YT
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I S  K G  E    I+ E      + D R+ N  +       +     + +  + ++
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSR 576

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECF--KKAIGSVRKWVPDHRLITAAYNKLEE--- 433
           G  P   ++ +L  G +K G   +  E F   K  G V        L T AYN   +   
Sbjct: 577 GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCV--------LDTHAYNTFIDGFC 628

Query: 434 -QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             G ++ A  LL  ++  G   T + Y S++   AK  ++
Sbjct: 629 KSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRL 668



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 137/311 (44%), Gaps = 5/311 (1%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACA 220
           L  +M E G+      +  ++ ++   G+LD    +L E+K N    D+V YN+ +    
Sbjct: 220 LFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFG 279

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K F E+K   + PD ++Y+++  +  K    ++A    ++ME+        
Sbjct: 280 KAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAY 339

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           AY++++  Y + G  DE   + ++  +     +   Y C+++ L K G   +A   ++E 
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +      +    N+L+       ++E A    + +   G+ P   T  ++     K  ++
Sbjct: 400 KK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYN 459
           ++    F+    + +   PD     +  + L +QG +D A  L   + ++  +    +Y 
Sbjct: 459 DEACSIFEGM--NHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 460 SLLRTYAKAGK 470
           SL++++ K G+
Sbjct: 517 SLIKSFFKCGR 527



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/364 (19%), Positives = 154/364 (42%), Gaps = 6/364 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A + FE +  K+  PD  T  +L+    +  +  +A  L E+M + 
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
             +   + Y  ++  +   G+ +   ++ +E+  +  SPD+   N ++       +    
Sbjct: 507 DKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKG 566

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K     PD +SYS L    +K     +       M+++ C  +  AY++ +  
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDG 626

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S     +
Sbjct: 627 FCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELN 686

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             + + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 687 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQ 746

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
                  K  P+H   +   N L      + A      ++  G   +T  Y +++   AK
Sbjct: 747 NM--KNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAK 804

Query: 468 AGKM 471
           AG +
Sbjct: 805 AGNI 808



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 52/337 (15%)

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEA 159
           D++L++     ++D + K          FE +  +   PD  + S L+H  V+   + E 
Sbjct: 546 DLRLLNA----YMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA 218
             L   M E G +     YN  ++ +  +G+++K  Q+L+E+K K   P VVTY   +  
Sbjct: 602 YELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDG 661

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
            A                                   K++  ++A    +E +      N
Sbjct: 662 LA-----------------------------------KIDRLDEAYMLFEEAKSNGLELN 686

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
            V YSSL+  +  +G  DE   I +++M      N   + C++ +LVK  E  +A   + 
Sbjct: 687 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQ 746

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
             +++ GT +    +IL+       +   A  F+  +  +G+KP   T+  +  G  K G
Sbjct: 747 NMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAG 806

Query: 399 QMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEE 433
            + +    F+  KA G     VPD    +A+YN + E
Sbjct: 807 NIAEASSLFERFKANGG----VPD----SASYNAIIE 835



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 3/233 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   ++ A    E +  K R P   T  +++    +  +  EA  L E+  
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 679

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     + Y+ +++ +   G++D+   +++EL +K  +P+V T+N  L A     +  
Sbjct: 680 SNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIN 739

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  +K  K  P+ I+YS L +   ++    KA    +EM+K+  + N + Y++++
Sbjct: 740 EALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 799

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           +     G   E   ++++  +     + A Y  +I  L       +A  I++E
Sbjct: 800 AGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEE 852



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 126/317 (39%), Gaps = 49/317 (15%)

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
           CP  Y+ +L +   N + D   Q+L E+      P   T    + +C   N         
Sbjct: 127 CPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLI 186

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             ++K K  P + +Y+TL            A ++++E                       
Sbjct: 187 QCMRKFKFRPAFSAYTTLIG----------ALSSVQE----------------------- 213

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              D +L ++ +M  L  +++   +T VI    + G  + A ++ DE +S     D  + 
Sbjct: 214 --SDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLY 271

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N+ +  +    +++MA  F++ + + G+ P   T+  +     K  ++++ +E F++   
Sbjct: 272 NVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM-- 329

Query: 413 SVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
              + VP       AYN +       G  D A  LL   +  G + + I YN +L    K
Sbjct: 330 EQNRNVP----CAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGK 385

Query: 468 AGKM--PLIIVERMQKD 482
            G++   L   E M+KD
Sbjct: 386 KGRLGEALRTFEEMKKD 402


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 151/348 (43%), Gaps = 17/348 (4%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG--LSSAENFFE 131
            N ++    K K+++ A +    M+   D + +  + + ++ L +  RG  L  AE  F 
Sbjct: 86  FNMLIDAYGKSKQWREAEKTFHLMK---DFQCLPTETSFNVLLAAYSRGVQLEKAEKLFH 142

Query: 132 NLPDKMRGPDTCSALLHSYV-----------QNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            + +    P T   ++ S +           ++ + ++AE     M + G L     +  
Sbjct: 143 EMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTI 202

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           M+N+Y      DK   + + ++K    P++ TY   + A A + +   AE+ F EL+   
Sbjct: 203 MINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVG 262

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             PD  +Y+ L   Y + E P  A    + M +   R ++V+Y+ L+  +   G   +  
Sbjct: 263 FIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQ 322

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++  M     K     +  ++SS  K G+  +AE +  E E+     D  + N LL+AY
Sbjct: 323 AVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAY 382

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
            N  +++  ES    +V+   KP  +T   L   Y + G +EK  E F
Sbjct: 383 GNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVF 430



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 155/356 (43%), Gaps = 20/356 (5%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG--DYAVHLDLISKIRGLSSAENFF 130
           +L +  +   ++K   ++    EWM       + SG   Y  +L+++ K   LS AE+ F
Sbjct: 133 QLEKAEKLFHEMKESNYSPGTVEWM-------IFSGIATYNTYLEVLGKSGRLSQAEDTF 185

Query: 131 ENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLY 185
            ++  +   P  +T + +++ Y +   S +A+ L   M +     CP     Y  ++N +
Sbjct: 186 RDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKA---LCPPNLYTYTALMNAH 242

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G   +  ++  EL+     PDV TYN  L A +       A++ F  + +  + PD 
Sbjct: 243 AREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQ 302

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           +SY+ L   + +  L   A      M++   +    ++  LLS Y   G   E  R+ ++
Sbjct: 303 VSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVRE 362

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           + +   K +   +  ++S+    G  ++ E++ +   S     D    N L+ AY     
Sbjct: 363 IENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGY 422

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +E AE  +N L +KG+ P   +W  L   Y ++    K +  F+K + +    +PD
Sbjct: 423 IEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKA--GCIPD 476


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 184/443 (41%), Gaps = 54/443 (12%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLD-----LISKIRGLSS----AENFFENLPDKM 137
           ++ AL + EW  L +       D  + LD     L+ +I G  S    A   F+ +P + 
Sbjct: 156 WERALLLFEWGWLHF-----GSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEK 210

Query: 138 RGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKV 194
              D    + +LHSY +  K   A  L  KM E G     + YN ML++Y   G+  D++
Sbjct: 211 YSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRI 270

Query: 195 PQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++L E++ K    D  T +  ++AC  +   + A K   ELK     P  ++Y+++  +
Sbjct: 271 LELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQV 330

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + K  +  +A + LKEME   C  + V Y+ L + Y   G+ DE + +   M S     N
Sbjct: 331 FGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPN 390

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              YT VI +  K G  + A  ++   + +    +    N +LA    +++ E       
Sbjct: 391 AITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLC 450

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFK---------------------- 408
            +   G  P   TW  +     ++G+   + KVL   K                      
Sbjct: 451 EMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCG 510

Query: 409 ------KAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYN 459
                 K  G + K  + P      A  N L  +GD   AE ++  +R  G    E  Y+
Sbjct: 511 SEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYS 570

Query: 460 SLLRTYAKAGKMPLIIVERMQKD 482
            LL  Y+KAG +  I  E+++K+
Sbjct: 571 LLLHCYSKAGNVKGI--EKVEKE 591



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F+ L      PD    +++L  + +NK  ++A  ++  + ECG      
Sbjct: 613 KCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLF 672

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++LY+  G+  K  ++L+ ++ +   PDVV+YN  +     +   + A     E+
Sbjct: 673 TYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEM 732

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               I P  ++Y+T  S Y  MEL ++A   ++ M +  CR + + Y  L+  Y   G  
Sbjct: 733 TTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKY 792

Query: 296 DEVLRIWKKMMSLFAKMND 314
           +E +    K+  L    +D
Sbjct: 793 EEAMDFVSKIKELDISFDD 811



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/312 (19%), Positives = 120/312 (38%), Gaps = 40/312 (12%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PDK    DT + L+ +Y +     ++  +  +M + GF  C   YN +LN     G    
Sbjct: 494 PDK----DTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKA 549

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK---------------------- 230
              ++Q+++ K   P+  +Y+L L   +   + +  EK                      
Sbjct: 550 AESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVL 609

Query: 231 -------------AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                        AF +L+K    PD +  +++ S++ + ++  KA   L  + +   + 
Sbjct: 610 TNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQP 669

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N   Y+ L+ LY   G   +   + K + +   + +   Y  VI    + G  ++A  + 
Sbjct: 670 NLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVL 729

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E  +          N  L+ Y      + A      ++    +P   T+++L  GY K 
Sbjct: 730 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKA 789

Query: 398 GQMEKVLECFKK 409
           G+ E+ ++   K
Sbjct: 790 GKYEEAMDFVSK 801



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 139/340 (40%), Gaps = 20/340 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++ +Y +  +  +A  L   M + G       YN +L +     + + V ++L E+
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K N  +P+  T+N  LA C+ +       K   E+K    +PD  +++TL S Y +    
Sbjct: 453 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSE 512

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             +A    EM K         Y++LL+     G       + + M +   K N+  Y+ +
Sbjct: 513 VDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLL 572

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN----QLEMAESFYNRLV 376
           +    K G  +  E +  E E   G   P    ILL   +  N     L   E  +++L 
Sbjct: 573 LHCYSKAGNVKGIEKV--EKEIYDGHVFPSW--ILLRTLVLTNHKCRHLRGMERAFDQLQ 628

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE--- 433
             G KP       +   + +     K     ++ +  + +      L T  YN L +   
Sbjct: 629 KYGYKPDLVVINSMLSMFARNKMFSKA----REMLHFIHECGLQPNLFT--YNCLMDLYV 682

Query: 434 -QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +G+   AE +L  ++N+G     + YN++++ + + G M
Sbjct: 683 REGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLM 722


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 166/401 (41%), Gaps = 17/401 (4%)

Query: 81  LRKLKRYKHALEVCEWMEL----QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           L++L     AL   EW E     Q++I   +      L+++ K    S A + F +  + 
Sbjct: 100 LQRLIDPGAALVFFEWAETRDGYQHEIFCCN----CLLNVLVKAHQYSQAHDLFRSRIEG 155

Query: 137 MRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
             G DT   S L+  +++  K   A  L ++M+  G       +  +L      GQ    
Sbjct: 156 QWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDA 215

Query: 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
               +E+ K   PD VTYN  +   +  +  + A +   E+      P+  SY+T+   +
Sbjct: 216 VLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 275

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K    E A   L++M  R C  + V+Y+++++    +   DE  R+  KM+    + N 
Sbjct: 276 CKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNV 335

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  ++    ++G+ + A  +  +        +    N ++  +  RN +E A      
Sbjct: 336 ITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQM 395

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           ++  G  P    +  +  G+ K G++ +  +  ++ I   R   PD   ++   + L + 
Sbjct: 396 MIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR--RGCRPDVACLSTLIDALCKA 453

Query: 435 GDIDGAEHLL---VTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
             ID A+ LL   + +  A  V    Y+ L+    KA ++P
Sbjct: 454 AAIDSAQELLRMSIGMDCAPDVVA--YSILIHALCKAKRLP 492



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 178/424 (41%), Gaps = 53/424 (12%)

Query: 55   AAITMRKW--KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
            AA+    W   +EG+    Y  N +++ L +LKR K AL+V       Y  K        
Sbjct: 826  AALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQV-------YRNK-------- 870

Query: 113  HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
                      L  + N F           T + L+H   +      A  L+++M   G  
Sbjct: 871  ----------LCCSPNMF-----------TFTILIHGLCRAGDIGTAYELLKEMPRHGVP 909

Query: 173  KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKETAEK 230
            +  + +N ++    S  +LD   ++ +E++++ S  PDV TY+  + +       + A +
Sbjct: 910  QNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 969

Query: 231  AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               ++      P+ ++YS+L     K    ++A   L+ M +  C  N V Y++++  + 
Sbjct: 970  LVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 1029

Query: 291  NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             +G  DE   + ++M+    + N   YT ++ +  K G   KAE+     E +   G   
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG---KAEDAIGLVEVMVEKG--Y 1084

Query: 351  VPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            VPN+     LL  +  ++++E A    + ++ KG  P   ++  +  G  K  ++ + + 
Sbjct: 1085 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 1144

Query: 406  CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
              ++ + +    VPD        + + +   +D A  L   ++ +G     + YNSL+  
Sbjct: 1145 LLEQMLSN--NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202

Query: 465  YAKA 468
              K+
Sbjct: 1203 LCKS 1206



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 112/236 (47%), Gaps = 3/236 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + K + L  AE++ + +      PD  T ++++    ++++  +A  L ++M 
Sbjct: 478 YSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMR 537

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G +   + Y+ +++ +  +  LD   +ML+ +K+    PDVVTY+  +         +
Sbjct: 538 AAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVD 597

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+      P+ ++Y+TL     K+   E+AA  L+ M K++C  + + Y+ L+
Sbjct: 598 KAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLI 657

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +   N    +E  R+ ++M       +   Y  ++ +L K    E  E +  E E+
Sbjct: 658 NGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 3/261 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   + SA+            PD    S L+H+  + K+  EAE+ ++ M +   
Sbjct: 447 IDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRC 506

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
               + YN +++    + +++    +   ++     PDVVTY++ + +    N+ ++A K
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +K+ K  PD ++YS L +   K    +KA    +EM    C  N V Y++L+    
Sbjct: 567 MLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLC 626

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +   ++   + + M       +   YTC+I+ L      E+A  +  E +      D  
Sbjct: 627 KINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRM 686

Query: 351 VPNILLAAYINRNQLEMAESF 371
               LL A    N LE+ E  
Sbjct: 687 TYGTLLRALQKTNNLELVEQL 707



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 145/356 (40%), Gaps = 8/356 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +RK  E G+  +    N I+    +    + A +V + M +Q      + +Y+  +    
Sbjct: 358 VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM-IQTGCPPDAINYSTIISGFC 416

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP- 175
           K   L  A +  E +  +   PD    S L+ +  +      A+ L+ +MS  G    P 
Sbjct: 417 KAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL-RMS-IGMDCAPD 474

Query: 176 -LPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFL 233
            + Y+ +++      +L +    L  + KN   PDVVTYN  +           A   F 
Sbjct: 475 VVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFD 534

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            ++   + PD ++YS +   + K    + A   L+ M++  C  + V YS+L++     G
Sbjct: 535 RMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAG 594

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D+   ++++M+      N   Y  +I  L K+ + E+A  + +     S T D     
Sbjct: 595 TVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYT 654

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            L+    N ++LE A      +  KG  P   T+  L     K   +E V +  K+
Sbjct: 655 CLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKE 710



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 129/304 (42%), Gaps = 9/304 (2%)

Query: 140  PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
            PD  T + ++ +  +  +   A  L   + E G     + YN +++    + + D+   +
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 198  LQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            L+E+  K+  SPD++TYN  +         + A K FL++    + PD ++YS + S   
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 1275

Query: 256  KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            K    ++A   L+ M K       + Y +L+  +   G  D+ L I + ++S  +  +  
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 1335

Query: 316  EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             ++  I  L K G   +A  + +         D    N LL  + + +  E A   +  +
Sbjct: 1336 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVM 1395

Query: 376  VTKGIKPCYTTWELLTWGYL--KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
               G +P   T+  L  G+L  KK   + + E  K  + +  K   +H L +     +E 
Sbjct: 1396 RQCGCEPDNATYTTLV-GHLVDKKSYKDLLAEVSKSMVDTGFKL--NHELSSKLEASIEV 1452

Query: 434  QGDI 437
            + D+
Sbjct: 1453 EADV 1456


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 178/415 (42%), Gaps = 12/415 (2%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           N ++  L K ++ +HALE+   M    YD  +V+  Y   +D + K   L +A+   + +
Sbjct: 14  NTLIAGLCKARKPRHALELLHVMAANGYDASVVT--YTTLIDGLCKSGDLDAAQALLQKM 71

Query: 134 PDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            D    P+  T +AL+    + ++  +A   +++M   G     + YN +++      ++
Sbjct: 72  ADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRM 131

Query: 192 DKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           D    +LQEL   +   PDVVTYN +++        +   +   E+ +  I PD +++ +
Sbjct: 132 DDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCS 191

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           + S   K    + A    K M +R C  + + YS +L   +     D V  + + M+   
Sbjct: 192 IISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
                A Y  +I +L++ G+ E A   Y++        +    N  + A     +  +A+
Sbjct: 252 HYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAK 311

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
           +    ++  G  P   ++  +  G  K G ++   +  +K + S     PD        +
Sbjct: 312 NILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDS-GCCKPDVIFFNTLIS 370

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG--KMPLIIVERMQ 480
              + G +  A+ LL  ++       ++  YN+++   +K G  K   +++E MQ
Sbjct: 371 GFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQ 425



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 99/270 (36%), Gaps = 12/270 (4%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           D   YN  +A          A +    +     D   ++Y+TL     K    + A   L
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           ++M    C  N V Y++L+          + ++  K+M+    + +   Y  +I  L   
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128

Query: 328 GEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              + A  +  E    SG    R+P     N  ++      +L+        +   GI P
Sbjct: 129 NRMDDAGLVLQELMIESG----RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISP 184

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  G  K  +++   + FK  +   R  VPD    +   + L     +D  E 
Sbjct: 185 DVVTFCSIISGLCKANRIDDAFQVFKGML--ERGCVPDSLTYSIMLDNLSRANRLDTVEE 242

Query: 443 LLVTLRNAGHVS-TEIYNSLLRTYAKAGKM 471
           +L  +  +GH + +  Y  L+    +AG +
Sbjct: 243 VLEHMVKSGHYALSATYAPLIHALIRAGDI 272


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 18/360 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A LH  +    SA A AL   M       C   +N ML    S G+  +  ++L+++ +
Sbjct: 83  TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 142

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEK 262
              P+ VTYN  +A   S+   + A     E++ +  I P+  +Y T+ S + K+   ++
Sbjct: 143 ---PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 199

Query: 263 AATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           A     EM  K   +   V Y++L+  Y + G  D  L    +M+     M  A Y  ++
Sbjct: 200 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 259

Query: 322 SSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +L   G   +A   Y+  E + G G   D    NIL+  +     ++ A   +  +  +
Sbjct: 260 HALFMDGRGTEA---YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 316

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDI 437
           G++    T+  L +   KKGQ+++  + F +A   VR+ + PD  L  A  N     G+I
Sbjct: 317 GVRATVVTYTALIYALSKKGQVQETDKLFDEA---VRRGIRPDLVLYNALINSHSTSGNI 373

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           D A  ++  +        ++ YN+L+R     G++     +++ M +  +Q D  T   L
Sbjct: 374 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 433



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 1/257 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           +AL+  Y    K   A    ++M E G       YN +++    +G+  +  ++++E+  
Sbjct: 221 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 280

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K  +PDV TYN+ +     + + + A + F  + +  +    ++Y+ L     K    ++
Sbjct: 281 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 340

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                 E  +R  R + V Y++L++ ++  G  D    I  +M       +D  Y  ++ 
Sbjct: 341 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 400

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L  LG  ++A  + DE        D    N L++ Y  +  ++ A    N ++ KG  P
Sbjct: 401 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460

Query: 383 CYTTWELLTWGYLKKGQ 399
              T+  L  G  K GQ
Sbjct: 461 TLLTYNALIQGLCKNGQ 477



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 1/253 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+   + +  EA  L+E+M   G       YN ++N +   G + K  ++ + +
Sbjct: 254 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 313

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++     VVTY   + A + +   +  +K F E  +  I PD + Y+ L + +      
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 373

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   + EMEK+    + V Y++L+     +G  DE  ++  +M     + +   Y  +
Sbjct: 374 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 433

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS     G+ + A  I +E  +          N L+       Q + AE+    +V  GI
Sbjct: 434 ISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 493

Query: 381 KPCYTTWELLTWG 393
            P  +T+  L  G
Sbjct: 494 TPDDSTYISLIEG 506



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+++  +  +  E + L ++    G     + YN ++N + ++G +D+  +++ E+
Sbjct: 324 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 383

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK  +PD VTYN  +         + A K   E+ +  I PD ++Y+TL S Y      
Sbjct: 384 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 443

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++L+      G  D+   + K+M+      +D+ Y  +
Sbjct: 444 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 503

Query: 321 ISSL 324
           I  L
Sbjct: 504 IEGL 507


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 159/365 (43%), Gaps = 5/365 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   + ++ K   L  A   FE+L    R P T +   ++  Y    K  EA +L+E+  
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G +   + YN +L      G++D+  ++ +E+KK+ +P++ TYN+ +         + 
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDC 395

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A +    ++K  + P+  + + +     K +  ++A    ++M+ + C  + + + SL+ 
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLID 455

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               +G  D+  +I++KM+    + N   YT +I +    G  E    IY +  + + + 
Sbjct: 456 GLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSP 515

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D ++ N  +       + E   + +  + ++   P   ++ +L  G +K G   +  E F
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELF 575

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
                  +  V D R      +   + G ++ A  LL  ++  G   T + Y S++   A
Sbjct: 576 YSM--KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 467 KAGKM 471
           K  ++
Sbjct: 634 KIDRL 638



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/433 (17%), Positives = 178/433 (41%), Gaps = 42/433 (9%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  LR+LK    A+E   W E + ++      Y   L ++++ R   + +     +   
Sbjct: 68  VIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVA 127

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAE---------------------------------- 160
             GP  +TC  ++ S V+  K  E                                    
Sbjct: 128 GFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 161 -ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L ++M E G+      +  ++  +   G++D    +L E+K ++   D+V YN+ + +
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                  + A K F E++   + PD ++Y+++  +  K    ++A    + +EK      
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             AY++++  Y + G  DE   + ++  +  +  +   Y C+++ L K+G+ ++A  +++
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFE 367

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           E +      +    NIL+       +L+ A    + +   G+ P   T  ++     K  
Sbjct: 368 EMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEI 457
           ++++    F++     +   PD     +  + L + G +D A  +   + ++    ++ +
Sbjct: 427 KLDEACAIFEQM--DYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIV 484

Query: 458 YNSLLRTYAKAGK 470
           Y SL++ +   G+
Sbjct: 485 YTSLIKNFFNHGR 497



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 145/375 (38%), Gaps = 63/375 (16%)

Query: 44  RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           R  S+VY            KE+GH ++K  +N+                         D+
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQ---------------------NCSPDL 517

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           +L++     ++D + K          FE +  +   PD  + S L+H  ++   + E   
Sbjct: 518 QLLN----TYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYE 573

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
           L   M E G +     YN +++ +   G+++K  Q+L+E+K K   P VVTY   +   A
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY-------------------------- 254
             +  + A   F E K  +I+ + + YS+L   +                          
Sbjct: 634 KIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVY 693

Query: 255 ---------IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
                    +K E   +A    + M++  C  N+V Y  L++    +   ++    W++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                K +   YT +IS L K G   +A  ++D +++  G  D    N ++    N N+ 
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRA 813

Query: 366 EMAESFYNRLVTKGI 380
             A S +     +G+
Sbjct: 814 MDAFSLFEETRRRGL 828



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 133/300 (44%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A   FE +  K+  PD  T  +L+    +  +  +A  + EKM + 
Sbjct: 417 IMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDS 476

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
                 + Y  ++  + ++G+ +   ++ +++  +N SPD+   N ++       + E  
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K  +  PD  SYS L    IK     +       M+++ C  +  AY+ ++  
Sbjct: 537 RAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S     +
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             + + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 716



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 134/343 (39%), Gaps = 11/343 (3%)

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
           CP  YN +L +       D + Q+L E+      P V T    + +C   N         
Sbjct: 97  CPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVV 156

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             ++K K  P + +Y+TL   +  +   +   T  ++M++         +++L+  +   
Sbjct: 157 QNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKE 216

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  D  L +  +M S     +   Y   I S  K+G+ + A   + E E+     D    
Sbjct: 217 GRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--KKA 410
             ++      N+L+ A   +  L      PC   +  +  GY   G+ ++       ++A
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
            GS+   +  + ++T     L + G +D A  +   ++     +   YN L+    +AGK
Sbjct: 337 KGSIPSVIAYNCILTC----LRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 471 MPLIIVER--MQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           +      R  MQK  +  +  T  ++  ++     + E  +IF
Sbjct: 393 LDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 178/461 (38%), Gaps = 56/461 (12%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S  +     S A  +FE
Sbjct: 227 NNVINACGAAGNWKKALELCKKMTENG----VGPDLITHNIVLSAFKNGAQYSKAIAYFE 282

Query: 132 NLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYIS 187
            +      PDTC+   ++H  V+     EA  L   M E      P  + Y  ++  Y  
Sbjct: 283 IMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSV 342

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            GQ +    +   +  +   P++V+YN  L A AS      A + F  LK+  + PD +S
Sbjct: 343 CGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVS 402

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM- 305
           Y++L + Y +   PEKA     EM K  C+ N+V+Y++L+  Y + G   E + +  +M 
Sbjct: 403 YTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEME 462

Query: 306 ----------------------------------MSLFAKMNDAEYTCVISSLVKLGEFE 331
                                              S   ++N   Y   I S + LG+++
Sbjct: 463 QDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYK 522

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           KA  +Y    + +   D    NIL++      +   +  F+  ++   I      +  + 
Sbjct: 523 KALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVI 582

Query: 392 WGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
             Y+K+G++ +    F   K  G      PD    T       + G    A  L   + N
Sbjct: 583 CSYVKQGKLTEAASTFNSMKETGC----FPDVLTYTTLIKAYSDDGSWRRAWDLFKEMEN 638

Query: 450 AGHVSTEIYNSLLRTYAKAGKMP---LIIVERMQKDNVQMD 487
            G     I  S L      G  P   L ++E M++  +Q++
Sbjct: 639 NGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLN 679



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 184/427 (43%), Gaps = 12/427 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+      KHA+ V  WM+ Q +    +  Y + + L ++   +  A   F  + + 
Sbjct: 123 LIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEW 182

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT ++L+H++ +  +   A  +M+ M           YN+++N   + G   K 
Sbjct: 183 RCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKA 242

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ +++ +N   PD++T+N+ L+A  +      A   F  +K +K+ PD  + + +   
Sbjct: 243 LELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHC 302

Query: 254 YIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+ L  +A      M +R  TC  + V Y+S++  Y+  G  +    ++  M++   +
Sbjct: 303 LVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVR 362

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  ++ +    G   +A   +   +      D      LL AY    Q E A   
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREV 422

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNK 430
           +N +     KP   ++  L   Y   G +++ +    +     ++  V     +  A  +
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMD 487
            ++   ID    +L   ++ G  ++T  YNS + +Y   G  K  L++   M+  NV+ D
Sbjct: 483 CKQLTKID---IILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPD 539

Query: 488 AETQKVL 494
           A T  +L
Sbjct: 540 AVTYNIL 546



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 122/327 (37%), Gaps = 46/327 (14%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  + S LL +  + K+  + + ++      G     + YN  +  Y+S G   K   +
Sbjct: 468 PDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVL 527

Query: 198 LQELKK-NTSPDVVTYNLWLAA---------------------------------CA--S 221
              ++  N  PD VTYN+ ++                                  C+   
Sbjct: 528 YTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVK 587

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           Q     A   F  +K+T   PD ++Y+TL   Y       +A    KEME    + + + 
Sbjct: 588 QGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIV 647

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
            SSL+      G  + VL++ + M     ++N   Y  +ISS   L +++ A  I +  +
Sbjct: 648 CSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLD 707

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           S   +      N +L       + E     + ++VT       +T+ +L    L  G+  
Sbjct: 708 SSLSSISFGTLNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWR 767

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAY 428
           K +E        V +W+ D  +    Y
Sbjct: 768 KYVE--------VLQWMEDAGVCPTLY 786



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 94/207 (45%), Gaps = 3/207 (1%)

Query: 129 FFENLPD--KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           FFE++ D       +  S+++ SYV+  K  EA +    M E G     L Y  ++  Y 
Sbjct: 562 FFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYS 621

Query: 187 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            +G   +   + +E++ N T PD +  +  + A       E   +    +K+ KI  +  
Sbjct: 622 DDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQK 681

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y  + S    +   + A+  ++ ++      +    + +L+     G  + +++++ KM
Sbjct: 682 AYFEIISSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKCGRTESMMKLFYKM 741

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEK 332
           ++  + +  + YT ++ +L+ +G++ K
Sbjct: 742 VTSCSTVGLSTYTILLRNLLIVGKWRK 768


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 128/274 (46%), Gaps = 1/274 (0%)

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           M G  TCS LL+   ++ K A+A+ + E +   G +   + YN ++N Y     L     
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 197 MLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           + +++K ++  PD +TYN  +           AE   +E++K+ +DP   +++TL   Y 
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
                EK  T L +M+++  + + +++ S++  +   G   E + I   M+      N  
Sbjct: 451 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I + ++ G+ E+A  + ++ ++   +      N+LL      +Q++ AE     L
Sbjct: 511 VYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 570

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             +G++P   ++  +      KG  +K LE  ++
Sbjct: 571 RNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 153/360 (42%), Gaps = 45/360 (12%)

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVV 210
           ++ K ++A  + ++M + G     + YN M++ ++  G L+   ++  Q L     P+VV
Sbjct: 206 RSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVV 265

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-----------TSLYIKMEL 259
           TYN+ L+        +       E+    + PD  +YS L           T L +  E 
Sbjct: 266 TYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAES 325

Query: 260 PEK----AATTLKEMEKRTCRKNRVA--------------------YSSLLSLYTNMGYK 295
            +K     A T   +    C+  +VA                    Y++L++ Y  +   
Sbjct: 326 LKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDL 385

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--N 353
                I+++M S   + +   Y  +I+ L KL    KAE++  E E  SG  DP V   N
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGV-DPSVETFN 443

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+ AY    QLE   +  + +  KGIK    ++  +   + K G++ + +      I  
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI-- 501

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            +   P+ ++  +  +   E GD + A  L+  ++N+G VS  I  YN LL+   ++ ++
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG-VSASIVTYNLLLKGLCRSSQI 560



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 109/291 (37%), Gaps = 39/291 (13%)

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +LN    +G++ K  Q+ + L      P  V YN  +       D   A   F ++K   
Sbjct: 340 LLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD I+Y+ L +   K+E+  KA   + EMEK     +   +++L+  Y   G  ++  
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            +   M     K +   +  V+ +  K G+  +A  I D+        + +V N ++ AY
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           I     E A     ++   G+     T+ LL  G  +  Q                    
Sbjct: 520 IESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ-------------------- 559

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
                            ID AE L+ TLRN G     + YN+++      G
Sbjct: 560 -----------------IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKG 593



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 124/321 (38%), Gaps = 42/321 (13%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAA 264
           PD   +N  + AC +  D + A      + +++    PD  SY+ + +   +      A 
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM       NR+ Y++++  +   G  +   R+  +M+    K N   Y  ++S L
Sbjct: 215 KVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGL 274

Query: 325 VKLGEFEKAENIYDE----------------WESISGTGDPR------------------ 350
            + G  ++   + DE                ++ ++ TG+ +                  
Sbjct: 275 CRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGA 334

Query: 351 -VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              +ILL       ++  A+  +  LV  G+ P    +  L  GY +   +      F++
Sbjct: 335 YTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
                R   PDH    A  N L +   +  AE L++ +  +G   S E +N+L+  Y  A
Sbjct: 395 M--KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 469 GKMP--LIIVERMQKDNVQMD 487
           G++     ++  MQ+  ++ D
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSD 473



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            +++ ++ +N K  EA A+++ M           YN +++ YI +G  ++   +++++K 
Sbjct: 478 GSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKN 537

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  S  +VTYNL L      +  + AE+    L+   + PD +SY+T+ S        +K
Sbjct: 538 SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDK 597

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--------SLFAKMND 314
           A   L+EM K   R       +L+S   + G   ++  ++++M+        S++  M D
Sbjct: 598 ALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657

Query: 315 AEYTC 319
           A   C
Sbjct: 658 AYVRC 662



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 36/166 (21%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           ++++ +Y+++  + +A  L+EKM   G     + YN +L     + Q+D+  +++  L+ 
Sbjct: 513 NSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL--------- 253
           +   PDVV+YN  ++AC ++ D + A +   E+ K  I P   +  TL S          
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHD 632

Query: 254 --------------------------YIKMELPEKAATTLKEMEKR 273
                                     Y++ E   K A+  KEM ++
Sbjct: 633 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEK 678


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 179/407 (43%), Gaps = 14/407 (3%)

Query: 114 LDLISKI---RGLS-SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            D+I K+   +GL+ +A   F+N+    R P   +C++LL++ V+N ++  A  + ++M 
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G +      + M+N +  +G++D+    +++++     P++VTY+  +    S  D E
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSL 285
            A+     + +  +  + ++Y+ L   Y K    ++A   L+ M E+     +  AY  L
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  Y   G  D+ +R+  +M+ L  K N      +I+   K GE  +AE +       + 
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N LL  Y        A +  ++++ +GI+P   T+  L  G  + G  +  L+
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            +   +   R   PD    +   + L +  + +GA  L   +   G   + I +N+++  
Sbjct: 459 IWHLMMK--RGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
             K GKM     I ++M+      D  T + L I      S V   F
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL-IDGYCKASNVGQAF 562



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 2/262 (0%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     +L  YV+   +  A  + + M +CG +      N +LN  + NG+      + Q
Sbjct: 156 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++ +    PDV   ++ + A       + A     +++   ++P+ ++Y +L + Y+ + 
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-Y 317
             E A   LK M ++   +N V Y+ L+  Y      DE  ++ + M    A + D   Y
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 335

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I    + G+ + A  + DE   +    +  + N L+  Y  R ++  AE    R+V 
Sbjct: 336 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395

Query: 378 KGIKPCYTTWELLTWGYLKKGQ 399
             +KP   ++  L  GY ++G 
Sbjct: 396 WNLKPDSYSYNTLLDGYCREGH 417



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 7/269 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ----LDKVPQML 198
           C++L++ Y +  +  EAE ++ +M +         YN +L+ Y   G      +   +ML
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           QE      P V+TYN  L         + A + +  + K  + PD + YSTL     KME
Sbjct: 430 QE---GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 486

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E A+T  K++  R   K+R+ +++++S    MG   E   I+ KM  L    +   Y 
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I    K     +A  +    E    +    + N L++      +L         +  +
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR 606

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           G+ P   T+  L  G+ K+G ++K    +
Sbjct: 607 GLTPNIVTYGALIDGWCKEGMLDKAFSSY 635



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 158/418 (37%), Gaps = 39/418 (9%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           A  +C+ M LQ  I+     Y   L  + ++     A   +  +  +   PD    S LL
Sbjct: 421 AFNLCDKM-LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLL 479

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTS 206
               + +    A  L + +   GF K  + +N M++     G++ +  ++  ++K    S
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TY   +      ++   A K    +++  I P    Y++L S   K     +    
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 599

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR---------------IWKKMMS---- 307
           L EM  R    N V Y +L+  +   G  D+                  I   M+S    
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659

Query: 308 ---------LFAKMND----AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
                    L  KM D     ++ C + S ++    +K  +  DE        +  V NI
Sbjct: 660 LGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 719

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            +A      +++ A  F++ L  KG  P   T+  L  GY   G +++      + +   
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR-- 777

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           R  VP+     A  N L +  ++D A+ L   L   G     + YN+L+  Y K G M
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + L+  Y +  K  EAE ++  M E    +     Y  +++ Y   G++D   ++L E
Sbjct: 298 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+     ++   N  +     + +   AE     +    + PD  SY+TL   Y +   
Sbjct: 358 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 417

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A     +M +       + Y++LL     +G  D+ L+IW  MM      ++  Y+ 
Sbjct: 418 TSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYST 477

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  L K+  FE A  ++ +  +   T      N +++      ++  AE  ++++   G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 380 IKPCYTTWELLTWGYLKK---GQMEKV 403
             P   T+  L  GY K    GQ  KV
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKV 564



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 154/392 (39%), Gaps = 40/392 (10%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + K+  +  AE  F+ + D    PD  T   L+  Y +     +A  +   M        
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 576

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              YN +++    + +L +V  +L E+  +  +P++VTY   +     +   + A  ++ 
Sbjct: 577 IEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYF 636

Query: 234 ELKKTKIDPDWISYSTLTS-LY-------------------------------IKMELPE 261
           E+ +  +  + I  ST+ S LY                               I+    +
Sbjct: 637 EMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQ 696

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCV 320
           K A +L E  K     N + Y+  ++     G  D+  R +  M+SL   + D   Y  +
Sbjct: 697 KIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTL 755

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I      G  ++A  + DE        +    N L+        ++ A+  +++L  KG+
Sbjct: 756 IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGL 815

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  GY K G M+   +   K I       P     +A  N L + GDI+ +
Sbjct: 816 FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE--GISPSVVTYSALINGLCKHGDIERS 873

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             LL  +  AG  S  I Y +L++ Y ++G+M
Sbjct: 874 MKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEM 905



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 87/185 (47%), Gaps = 1/185 (0%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
           K  +A      +S  GF+     Y  +++ Y + G +D+  ++  E L++   P++VTYN
Sbjct: 729 KVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYN 788

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +       + + A++ F +L +  + P+ ++Y+TL   Y K+   + A     +M + 
Sbjct: 789 ALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE 848

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + V YS+L++     G  +  +++  +M+         EY  ++   ++ GE +K 
Sbjct: 849 GISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKI 908

Query: 334 ENIYD 338
             +YD
Sbjct: 909 HKLYD 913



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 23/311 (7%)

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F   P  ++ +L +Y+  G       +   + K    P + + N  L       +  TA 
Sbjct: 152 FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAH 211

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             + ++ +  I PD    S + + + K    ++AA  +K+ME      N V Y SL++ Y
Sbjct: 212 YVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGY 271

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGD 348
            ++G  +    + K M       N   YT +I    K  + ++AE +     E  +   D
Sbjct: 272 VSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPD 331

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            R   +L+  Y    +++ A    + ++  G+K        L  GY K+G++        
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIH------- 384

Query: 409 KAIGSVRKWV-----PDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEI-Y 458
           +A G + + V     PD    + +YN L +    +G    A +L   +   G   T + Y
Sbjct: 385 EAEGVITRMVDWNLKPD----SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTY 440

Query: 459 NSLLRTYAKAG 469
           N+LL+   + G
Sbjct: 441 NTLLKGLCRVG 451



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/294 (18%), Positives = 112/294 (38%), Gaps = 68/294 (23%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFL-------------------------KCP-- 175
           CS ++    +  +  EA  LM+KM + GF                           C   
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTF 709

Query: 176 -LPYNHMLNLYISN----GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
            LP N + N+ I+     G++D   +    L  K   PD  TY   +   ++  + + A 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +   E+ +  + P+ ++Y+ L +   K E  ++A     ++ ++    N V Y++L+  Y
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             +G  D   ++  KM+      +   Y+ +I+ L K G+ E++  +             
Sbjct: 830 CKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKL------------- 876

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                                  N+++  G+      +  L  GY++ G+M+K+
Sbjct: 877 ----------------------LNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKI 908


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL-VSGDYAVHLD 115
           I  R  +    T H      +++EL K  R   AL + E M     IK     D A H  
Sbjct: 365 IAGRNIQPSSGTCHS-----VIQELCKAGRVDSALSLLETM-----IKRGYCPDMATHSM 414

Query: 116 LIS---KIRGLSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKM-S 167
           LI+   K   +  A+ F + +  K+    +     ++LL+S  + KK  +A A+   M S
Sbjct: 415 LINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVS 474

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKE 226
           E  F+   + Y+ +++ +    +L +  ++  Q +  N  P+V TYN +L     +    
Sbjct: 475 ERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIA 534

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+  + E+      PD I+YSTL   +      ++A    + M  R CR N V Y+ LL
Sbjct: 535 DAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLL 594

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                    DE   +++KM+      +   YT ++     +G+ E+A  ++DE   +S  
Sbjct: 595 HGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM--VSKG 652

Query: 347 GDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            DP V   N LL  +    +   A+  +  +V++  KP   +  ++  G  K  +++  +
Sbjct: 653 HDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAV 712

Query: 405 ECFKK 409
           E F++
Sbjct: 713 EVFER 717



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 124/274 (45%), Gaps = 4/274 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   L+  + +  +   AE L ++M +   +     YN  LN  +  G++     +
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E+     SPDV+TY+  +   +     + A + F  +      P+ ++Y+ L     K
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCK 599

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
              P++A    ++M +R C  +RV Y++LL  + N+G  ++ + ++ +M+S     +   
Sbjct: 600 ESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVA 659

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL- 375
           Y C++    + G+  +A+ ++    S     D    NI++       +L+ A   + R+ 
Sbjct: 660 YNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERME 719

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              G  P   T+  L +G   + ++ + ++ FK+
Sbjct: 720 QDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE 753



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 4/240 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           ++ A+  +E +      PD  T S L+H +   +K  +A  L E M   G     + YN 
Sbjct: 533 IADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNC 592

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L+      + D+  ++ +++ ++   PD VTY   L    +    E A + F E+    
Sbjct: 593 LLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 652

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            DPD ++Y+ L   + +   P +A    + M  R C+ + V+++ ++   +     D+ +
Sbjct: 653 HDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAV 712

Query: 300 RIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            ++++M        D   Y  +I  L       +A  ++ E + +  + DP   N+LL A
Sbjct: 713 EVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKIDPDWIS 246
           G++D    +L+ + K+   PD+ T+++ +   C +   +E  E  FL+    KI     S
Sbjct: 388 GRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE--FLQGMDRKISSRSSS 445

Query: 247 ---YSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              Y++L +   K +   +A      M  +R+   + V+YS L+  +  +       +++
Sbjct: 446 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLY 505

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M+ L    N   Y   ++ L++ G    A+ +Y+E  +   + D    + L+  +   
Sbjct: 506 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLA 565

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            + + A   +  ++++G +P   T+  L  G  K+ + ++  E F+K +   R   PD  
Sbjct: 566 RKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE--RGCDPDRV 623

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
             T         G I+ A  +   + + GH    + YN LL+ + +AGK
Sbjct: 624 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 672



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/364 (17%), Positives = 142/364 (39%), Gaps = 47/364 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--MLNLYISNGQLDKVPQMLQ 199
           TC +++    +  +   A +L+E M + G+  CP    H  ++N      ++ +  + LQ
Sbjct: 376 TCHSVIQELCKAGRVDSALSLLETMIKRGY--CPDMATHSMLINELCKADKIQEAQEFLQ 433

Query: 200 ELKKNTS---------------------------------------PDVVTYNLWLAACA 220
            + +  S                                       PDVV+Y++ +    
Sbjct: 434 GMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFC 493

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
             ++   AEK + ++      P+  +Y+   +  ++      A    +EM    C  + +
Sbjct: 494 KIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVI 553

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            YS+L+  ++     D+   +++ M+S   + N   Y C++  L K  + ++A  ++ + 
Sbjct: 554 TYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
                  D      LL  + N  ++E A   ++ +V+KG  P    +  L  G+ + G+ 
Sbjct: 614 VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 673

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--Y 458
            +  + F+  +   R+  PD        + L +   +D A  +   +      S ++  Y
Sbjct: 674 GEAKQLFQVMVS--RQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 731

Query: 459 NSLL 462
           NSL+
Sbjct: 732 NSLI 735



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 168/422 (39%), Gaps = 51/422 (12%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116
           + ++KW  +G +  +  +  +++ LR       AL    W++ + + K     Y   LD 
Sbjct: 85  VVVKKW--DGKSSCRETVGAVIKHLRD---GGEALTFFRWLQAR-NFKHDVFTYNCLLDK 138

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + R L  A   FE +  +   P+  T + L+ S    + S EA     +M + GF   
Sbjct: 139 LIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPS 198

Query: 175 PLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              Y  +     + G+  +  ++  ++L+K  + +++     L     Q+    A K F 
Sbjct: 199 STLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFR 258

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            + K+   PD   YS +   + K+E  ++A                        L+  M 
Sbjct: 259 AMVKSGCKPDATIYSYMVLAHCKLENLDEA----------------------FKLFLEMA 296

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA-ENIYDEWESISGTGDPRVP 352
            + +            A +N+  +T  +S L K G+ E+A E      ES+S +  P V 
Sbjct: 297 VESK------------APLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLS-SSQP-VY 342

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           ++L+   I   +++ AE     +  + I+P   T   +     K G+++  L   +  I 
Sbjct: 343 DMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIK 402

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN---AGHVSTEIYNSLLRTYAKAG 469
             R + PD    +   N+L +   I  A+  L  +     +   S   YNSLL +  KA 
Sbjct: 403 --RGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAK 460

Query: 470 KM 471
           K+
Sbjct: 461 KV 462


>gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020
 gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 842

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 168/406 (41%), Gaps = 54/406 (13%)

Query: 111 AVHLDLISKIRGLSSAENFF------ENLPDK--MRGPDTCSALLHSYVQNKKSAEAEAL 162
            + L +  K R    AE FF      EN  D        T + ++ +Y ++ +  EA   
Sbjct: 261 GIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASET 320

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222
            ++M E G +   + +N M+++Y +NGQL +V  +++ +K + +PD  TYN+ ++     
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPDTRTYNILISLHTKN 380

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           ND E A   F E+K   + PD +SY TL   +    + E+A   + EM+      +    
Sbjct: 381 NDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQ 440

Query: 283 SSLLSLYTNMGYKDEVLR---IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           S+L  +Y     + E+L     W K   +   M+   Y+  I +  + G   +AE ++  
Sbjct: 441 SALTRMYV----EAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFIC 496

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW------- 392
            + ++        N+++ AY      E A   +  +++ G+ P   T+  L         
Sbjct: 497 CQEVNKRTVIEY-NVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADM 555

Query: 393 ----------------------------GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
                                        ++K GQ+    E +K+ +       PD  + 
Sbjct: 556 PHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVE--YNIEPDVVVY 613

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
               N   + G++  A   +  ++ AG   ++ IYNSL++ Y K G
Sbjct: 614 GVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVG 659



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 146/317 (46%), Gaps = 17/317 (5%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE----AEALME 164
           +Y V +      +    A   FE++      PD C+   ++ VQ   SA+        +E
Sbjct: 507 EYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCT--YNTLVQILASADMPHKGRCYLE 564

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQN 223
           KM E G++   +PY  +++ ++  GQL+   ++ +E+ + N  PDVV Y + + A A   
Sbjct: 565 KMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTG 624

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV--A 281
           + + A      +K+  I  + + Y++L  LY K+   ++A    +++  ++C K +    
Sbjct: 625 NVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKL-LQSCNKTQYPDV 683

Query: 282 YSS--LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           Y+S  +++LY+      +   I+  M     + N+  +  ++    K G FE+A  I  +
Sbjct: 684 YTSNCMINLYSERSMVRKAEAIFDSMKQR-GEANEFTFAMMLCMYKKNGRFEEATQIAKQ 742

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
              +    DP   N +L  +    + + A   +  +V+ GI+P  +T++ L    +K G 
Sbjct: 743 MREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGM 802

Query: 400 MEKVLECFKKAIGSVRK 416
            +K +    + I  +RK
Sbjct: 803 SKKAV----RKIEEIRK 815



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 42/298 (14%)

Query: 178 YNHMLNLYISNGQLDKVPQML---QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           Y+  ++ Y   G L +  ++    QE+ K T   V+ YN+ + A       E A + F  
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKRT---VIEYNVMIKAYGISKSCEKACELFES 530

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    + PD  +Y+TL  +    ++P K    L++M +     + + Y +++S       
Sbjct: 531 MMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVIS------- 583

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
                                       S VKLG+   AE +Y E    +   D  V  +
Sbjct: 584 ----------------------------SFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGV 615

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+ A+ +   ++ A S+   +   GI      +  L   Y K G +++    ++K + S 
Sbjct: 616 LINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSC 675

Query: 415 RK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            K   PD        N   E+  +  AE +  +++  G  +   +  +L  Y K G+ 
Sbjct: 676 NKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRF 733



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 12/235 (5%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM ++  +     Y +L+ +Y+  G K   L    KM  +  + ++     V+    K  
Sbjct: 212 EMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAR 271

Query: 329 EFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           EF+KAE  + +W       D  V       N ++  Y    Q++ A   + R++ +GI P
Sbjct: 272 EFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVP 331

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +   Y   GQ+ +V    K          PD R      +   +  DI+ A  
Sbjct: 332 TTVTFNTMIHIYGNNGQLGEVTSLMKTM---KLHCAPDTRTYNILISLHTKNNDIERAGA 388

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
               +++ G     + Y +LL  ++    +     ++  M  DNV++D  TQ  L
Sbjct: 389 YFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSAL 443



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 120/276 (43%), Gaps = 6/276 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + K +E G+         ++    KL +   A EV + M ++Y+I+     Y V ++  +
Sbjct: 563 LEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEM-VEYNIEPDVVVYGVLINAFA 621

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKM-SECGFLKCP 175
               +  A ++ E + +     ++   ++L+  Y +     EAEA+  K+   C   + P
Sbjct: 622 DTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYP 681

Query: 176 LPY--NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
             Y  N M+NLY     + K   +   +K+    +  T+ + L         E A +   
Sbjct: 682 DVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIAK 741

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           ++++ KI  D +SY+++  L+      ++A  T KEM     + +   + SL ++   +G
Sbjct: 742 QMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLG 801

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
              + +R  +++     K     +   +SSLV +G+
Sbjct: 802 MSKKAVRKIEEIRKKEIKRGLELWISTLSSLVGIGD 837


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 179/407 (43%), Gaps = 14/407 (3%)

Query: 114 LDLISKI---RGLS-SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            D+I K+   +GL+ +A   F+N+    R P   +C++LL++ V+N ++  A  + ++M 
Sbjct: 125 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 184

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G +      + M+N +  +G++D+    +++++     P++VTY+  +    S  D E
Sbjct: 185 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 244

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSL 285
            A+     + +  +  + ++Y+ L   Y K    ++A   L+ M E+     +  AY  L
Sbjct: 245 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 304

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  Y   G  D+ +R+  +M+ L  K N      +I+   K GE  +AE +       + 
Sbjct: 305 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 364

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N LL  Y        A +  ++++ +GI+P   T+  L  G  + G  +  L+
Sbjct: 365 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 424

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            +   +   R   PD    +   + L +  + +GA  L   +   G   + I +N+++  
Sbjct: 425 IWHLMMK--RGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 482

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
             K GKM     I ++M+      D  T + L I      S V   F
Sbjct: 483 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL-IDGYCKASNVGQAF 528



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 2/262 (0%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     +L  YV+   +  A  + + M +CG +      N +LN  + NG+      + Q
Sbjct: 122 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 181

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++ +    PDV   ++ + A       + A     +++   ++P+ ++Y +L + Y+ + 
Sbjct: 182 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 241

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-Y 317
             E A   LK M ++   +N V Y+ L+  Y      DE  ++ + M    A + D   Y
Sbjct: 242 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 301

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I    + G+ + A  + DE   +    +  + N L+  Y  R ++  AE    R+V 
Sbjct: 302 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 361

Query: 378 KGIKPCYTTWELLTWGYLKKGQ 399
             +KP   ++  L  GY ++G 
Sbjct: 362 WNLKPDSYSYNTLLDGYCREGH 383



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 7/269 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ----LDKVPQML 198
           C++L++ Y +  +  EAE ++ +M +         YN +L+ Y   G      +   +ML
Sbjct: 336 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 395

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           QE      P V+TYN  L         + A + +  + K  + PD + YSTL     KME
Sbjct: 396 QE---GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 452

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E A+T  K++  R   K+R+ +++++S    MG   E   I+ KM  L    +   Y 
Sbjct: 453 NFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 512

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I    K     +A  +    E    +    + N L++      +L         +  +
Sbjct: 513 TLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIR 572

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           G+ P   T+  L  G+ K+G ++K    +
Sbjct: 573 GLTPNIVTYGALIDGWCKEGMLDKAFSSY 601



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + L+  Y +  K  EAE ++  M E    +     Y  +++ Y   G++D   ++L E
Sbjct: 264 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 323

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+     ++   N  +     + +   AE     +    + PD  SY+TL   Y +   
Sbjct: 324 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 383

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A     +M +       + Y++LL     +G  D+ L+IW  MM      ++  Y+ 
Sbjct: 384 TSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYST 443

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  L K+  FE A  ++ +  +   T      N +++      ++  AE  ++++   G
Sbjct: 444 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 503

Query: 380 IKPCYTTWELLTWGYLKK---GQMEKV 403
             P   T+  L  GY K    GQ  KV
Sbjct: 504 CSPDGITYRTLIDGYCKASNVGQAFKV 530



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 158/418 (37%), Gaps = 39/418 (9%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           A  +C+ M LQ  I+     Y   L  + ++     A   +  +  +   PD    S LL
Sbjct: 387 AFNLCDKM-LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLL 445

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTS 206
               + +    A  L + +   GF K  + +N M++     G++ +  ++  ++K    S
Sbjct: 446 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 505

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TY   +      ++   A K    +++  I P    Y++L S   K     +    
Sbjct: 506 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 565

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR---------------IWKKMMS---- 307
           L EM  R    N V Y +L+  +   G  D+                  I   M+S    
Sbjct: 566 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 625

Query: 308 ---------LFAKMND----AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
                    L  KM D     ++ C + S ++    +K  +  DE        +  V NI
Sbjct: 626 LGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 685

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            +A      +++ A  F++ L  KG  P   T+  L  GY   G +++      + +   
Sbjct: 686 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR-- 743

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           R  VP+     A  N L +  ++D A+ L   L   G     + YN+L+  Y K G M
Sbjct: 744 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 801



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 23/311 (7%)

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F   P  ++ +L +Y+  G       +   + K    P + + N  L       +  TA 
Sbjct: 118 FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAH 177

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             + ++ +  I PD    S + + + K    ++AA  +K+ME      N V Y SL++ Y
Sbjct: 178 YVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGY 237

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGD 348
            ++G  +    + K M       N   YT +I    K  + ++AE +     E  +   D
Sbjct: 238 VSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPD 297

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            R   +L+  Y    +++ A    + ++  G+K        L  GY K+G++        
Sbjct: 298 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIH------- 350

Query: 409 KAIGSVRKWV-----PDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEI-Y 458
           +A G + + V     PD    + +YN L +    +G    A +L   +   G   T + Y
Sbjct: 351 EAEGVITRMVDWNLKPD----SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTY 406

Query: 459 NSLLRTYAKAG 469
           N+LL+   + G
Sbjct: 407 NTLLKGLCRVG 417



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 6/205 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-L 201
           CS ++    +  +  EA  LM+KM + GF      +   L   I    + K+   L E  
Sbjct: 616 CSTMVSGLYRLGRIDEANLLMQKMVDHGFFP---DHECFLKSDIRYAAIQKIADSLDESC 672

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K    P+ + YN+ +A        + A + F  L      PD  +Y TL   Y      +
Sbjct: 673 KTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVD 732

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A     EM +R    N V Y++L++        D   R++ K+       N   Y  +I
Sbjct: 733 EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 792

Query: 322 SSLVKLGEFEKAENIYDEW--ESIS 344
               K+G  + A  + D+   E IS
Sbjct: 793 DGYCKIGNMDAAFKLKDKMIEEGIS 817



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/438 (18%), Positives = 160/438 (36%), Gaps = 91/438 (20%)

Query: 62  WKEEGHTVHKYEL----------------NRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           +  EGHT   + L                N +++ L ++  +  AL++   M ++  +  
Sbjct: 378 YCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM-MKRGVAP 436

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALM 163
               Y+  LD + K+     A   ++++  +   +   T + ++    +  K  EAE + 
Sbjct: 437 DEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIF 496

Query: 164 EKMSECGFLKCPLPYNHMLNLYI--SN-GQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
           +KM + G     + Y  +++ Y   SN GQ  KV   ++  ++  SP +  YN  ++   
Sbjct: 497 DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME--REPISPSIEMYNSLISGLF 554

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                        E+    + P+ ++Y  L   + K  + +KA ++  EM +     N +
Sbjct: 555 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 614

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMS--------------------------------L 308
             S+++S    +G  DE   + +KM+                                  
Sbjct: 615 ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKT 674

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIY----------DEWE--------SISGTGDPR 350
           F   N+  Y   I+ L K G+ + A   +          D +         S +G  D  
Sbjct: 675 FLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 734

Query: 351 ------------VPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
                       VPNI     L+        ++ A+  +++L  KG+ P   T+  L  G
Sbjct: 735 FRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDG 794

Query: 394 YLKKGQMEKVLECFKKAI 411
           Y K G M+   +   K I
Sbjct: 795 YCKIGNMDAAFKLKDKMI 812


>gi|297847014|ref|XP_002891388.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337230|gb|EFH67647.1| hypothetical protein ARALYDRAFT_336905 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 310

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
           R W E+G  V    +  +++      +   ALE  EWM  Q    + S DYA  L L+  
Sbjct: 42  RWWSEQGDQVKPSYVRGVIKNFHDFNQCSKALEASEWMCEQKFFNIFSEDYAARLHLVET 101

Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE-AEALMEKMSECGFLKCPLPY 178
           + GL  AE FFE++P+ MR       LL SY +++K+ + AEA  EKM + GFL  P P+
Sbjct: 102 VLGLEEAEKFFESIPENMRDYSVYDNLLRSYTKSEKTLDKAEATFEKMRDLGFLLKPSPF 161

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKN 204
           N M++LY    + D V ++ +E+ +N
Sbjct: 162 NSMISLYRHLKKKDMVKKLEREMMEN 187



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 7/235 (2%)

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
            H + Q  K+ EA    E M E  F       Y   L+L  +   L++  +  + + +N 
Sbjct: 63  FHDFNQCSKALEAS---EWMCEQKFFNIFSEDYAARLHLVETVLGLEEAEKFFESIPENM 119

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
               V  NL  +   S+   + AE  F +++          ++++ SLY  ++  +    
Sbjct: 120 RDYSVYDNLLRSYTKSEKTLDKAEATFEKMRDLGFLLKPSPFNSMISLYRHLKKKDMVKK 179

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             +EM +   R +     ++L++ +    KD +  +W  +     KM D EY   IS L+
Sbjct: 180 LEREMMENDVRFDSHKELNVLTILSTC--KDSMYSVWNYIKKR-GKMTDEEYRSRISYLL 236

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           KL + + AE +Y+EW+ +    D  +P++L++ +         E   + +  K I
Sbjct: 237 KLDDVQGAEKLYEEWKPVGPKLDMSIPSLLISRFCEEGNGSKVEELVDSIRKKKI 291


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 163/377 (43%), Gaps = 13/377 (3%)

Query: 60  RKWKEEGHT-VHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHLD 115
           R+ K+EG    +    + +V  L K+ R   AL V + M    LQ D+ +   +  +H  
Sbjct: 35  RRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVC--NTLIHC- 91

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
              ++  L  A     ++       D  T S L+ +  +  ++A+A  +   M + G + 
Sbjct: 92  -TCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMP 150

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
             + YN +++     G++D+  ++L+++ +K   PD  TYN+ +   +S    E A   F
Sbjct: 151 DTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFF 210

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +K+ K  PD ++Y+TL +   K+   ++A     EM+   C  +   + +L+      
Sbjct: 211 GMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKA 270

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  ++ L    +++ +    N   Y  +IS   + G+ +K   ++ +    S   D    
Sbjct: 271 GRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITY 330

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            IL+  +  R    MA      +V +G  P   T+ +L       GQ+E     FK+ I 
Sbjct: 331 TILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIA 390

Query: 413 SVRKWVPDHRLITAAYN 429
             + + PD +  +A  N
Sbjct: 391 --KGFNPDMQTYSALPN 405



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 5/299 (1%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFL 233
           + YN ++  Y   G  D+   M + LK+  S  P+ V+++  +      +    A   F 
Sbjct: 12  VAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQ 71

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+    +  D    +TL     ++ +  +A   L  M       +   YS L+      G
Sbjct: 72  EMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAG 131

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              + L ++  M       +   Y  +IS L K G+ ++A  + ++        D R  N
Sbjct: 132 RAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYN 191

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           I++    +  + E A SF+  +  +   P   T+  L  G  K  + ++  + F +    
Sbjct: 192 IVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM--Q 249

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
             K +PD        + L + G ++ A      L   GHV ++ IYN+L+  + ++G++
Sbjct: 250 ANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQV 308



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 132/319 (41%), Gaps = 4/319 (1%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYN 213
           ++ +A A+ ++M   G        N +++     G L +  ++L  +  +    DV TY+
Sbjct: 62  RATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYS 121

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             + A         A + F  ++K    PD + Y+ L S   K    ++A   L++M ++
Sbjct: 122 YLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK 181

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               +   Y+ ++ + ++ G  ++    +  M       +   Y  +++ L KL   ++A
Sbjct: 182 GIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEA 241

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
            +++DE ++     D      L+       ++E A     RLV  G  P    +  L  G
Sbjct: 242 CDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISG 301

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
           + + GQ++K  E F+  I       PD    T        +G    A  LL  +   GH 
Sbjct: 302 FCRSGQVDKGYELFQDMIEC--SCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHT 359

Query: 454 -STEIYNSLLRTYAKAGKM 471
            +   YN L+R+ + AG++
Sbjct: 360 PALATYNVLIRSLSMAGQV 378



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 6/207 (2%)

Query: 50  YAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           Y K  +   M K ++    V  Y  N ++  L+KL+R   A ++ + M+    +  ++  
Sbjct: 203 YEKAYSFFGMMKRRKHSPDVVTY--NTLLNGLKKLRRTDEACDLFDEMQANKCMPDLT-T 259

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           +   +D ++K   +  A      L      P++   +AL+  + ++ +  +   L + M 
Sbjct: 260 FGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMI 319

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           EC      + Y  ++  +   G      ++LQE+ ++  +P + TYN+ + + +     E
Sbjct: 320 ECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVE 379

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSL 253
            A   F E+     +PD  +YS L +L
Sbjct: 380 DAYTLFKEMIAKGFNPDMQTYSALPNL 406



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 84  LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD-- 141
           +KR KH+ +V  +  L              L+ + K+R    A + F+ +      PD  
Sbjct: 213 MKRRKHSPDVVTYNTL--------------LNGLKKLRRTDEACDLFDEMQANKCMPDLT 258

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+ +  +  +  +A     ++ + G +     YN +++ +  +GQ+DK  ++ Q++
Sbjct: 259 TFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDM 318

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT-SLYIKMEL 259
            + +  PD +TY + +   + +     A +   E+ +    P   +Y+ L  SL +  ++
Sbjct: 319 IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 378

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            E A T  KEM  +    +   YS+L +L T
Sbjct: 379 -EDAYTLFKEMIAKGFNPDMQTYSALPNLST 408


>gi|297847016|ref|XP_002891389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337231|gb|EFH67648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 371

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 50  YAKRSAAIT-MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           Y   SA  T + +W+E G  V    +  +V + R  +++  ALE  EWM  Q    +   
Sbjct: 61  YKTVSAVKTHLERWRELGDQVKPSYVRGLVEDFRSTEQFSKALEASEWMCEQRVFNVFPE 120

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE-AEALMEKMS 167
           DYA  L+L+  + GL  AE FFE +P+ MR       LL SY +++K+ + AE   EKM 
Sbjct: 121 DYAARLNLVETVLGLEEAEKFFERIPENMRDYSVYENLLRSYTKSEKTLDKAEDTFEKMR 180

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           + GFL  P P++ M++LY    + D V ++  E+ +N
Sbjct: 181 DLGFLSKPSPFDTMISLYRKLNKRDMVKKLKYEMMEN 217



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQML 198
           P     L+  +   ++ ++A    E M E       P  Y   LNL  +   L++  +  
Sbjct: 83  PSYVRGLVEDFRSTEQFSKALEASEWMCEQRVFNVFPEDYAARLNLVETVLGLEEAEKFF 142

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           + + +N     V  NL  +   S+   + AE  F +++          + T+ SLY K+ 
Sbjct: 143 ERIPENMRDYSVYENLLRSYTKSEKTLDKAEDTFEKMRDLGFLSKPSPFDTMISLYRKLN 202

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             +       EM +   + +R    ++LS+ ++   +D +  +W K      K+ D EY 
Sbjct: 203 KRDMVKKLKYEMMENNVKIDRPIELNVLSIVSDFK-RDYLDPLWNKYKKE-GKLMDDEYR 260

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
             IS L+KL + + AE IY +W+      D  VP +L++ +         E   N +  K
Sbjct: 261 IRISYLLKLDDVQGAEKIYQKWQPTGPKLDMSVPGLLISRFRAEGNESKVEEMVNSIRMK 320

Query: 379 GI 380
            I
Sbjct: 321 RI 322


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 194/446 (43%), Gaps = 77/446 (17%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           KE G    +Y  N ++   R+   YK A +V + M+        SG              
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMK-------ASG-------------- 273

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
                  FE  PDK+    T ++LL  Y + ++  EA  ++++M   G     + YN ++
Sbjct: 274 -------FE--PDKV----TFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLI 320

Query: 183 NLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC--ASQNDKETAE---------- 229
           + Y+ +G L++   + QE++ K   PDVVTY   ++    A + D    E          
Sbjct: 321 SSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCK 380

Query: 230 -----------------------KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
                                    F EL+     PD ++++TL +++ +  L  + +  
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            KEM+K      R  Y SL+S Y+  G  D  ++I+K+MM      + + Y  V+S+L +
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G +E+AE ++ E E      D    + LL AY N  +L+  ++  + + ++ I+P    
Sbjct: 501 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP--HN 558

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           W + T   L   ++  + E  +KA   +R  +   D  ++ A  +   +   +   E +L
Sbjct: 559 WLVKTL-VLVNSKVNNLAEA-EKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL 616

Query: 445 VTLR-NAGHVSTEIYNSLLRTYAKAG 469
             ++ +A ++S   YNSL+  Y++ G
Sbjct: 617 SLMKESAINLSAATYNSLMHMYSRLG 642



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 46/311 (14%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y   G  D   Q+
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 475

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            + + +    PDV TYN  L+A A     E AEK F E+++    PD  SYS+L   Y  
Sbjct: 476 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535

Query: 257 MELPEK-----------------------------------AATTLKEMEKRTCRKNRVA 281
            +  +K                                   A     E+ ++ C  +   
Sbjct: 536 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 595

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIY 337
            ++++S+Y     K+ ++R  +K++SL  +    ++ A Y  ++    +LG+ EK ENI 
Sbjct: 596 LNAMVSIYG----KNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENIL 651

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S     D    N ++ AY  + Q++ A   ++ +   G+KP   T+ +    Y+  
Sbjct: 652 TEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSN 711

Query: 398 GQMEKVLECFK 408
              E+ +E  +
Sbjct: 712 SMFEEAIELVR 722



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +  +  +AE L  +M E         Y+ +L+ Y +  +LDK    
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK---- 541

Query: 198 LQELKKNTSPDVVTYNLWLAAC-----ASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           ++ L  +   + +  + WL        +  N+   AEKAFLEL++ +   D    + + S
Sbjct: 542 MKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVS 601

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           +Y K  +  K    L  M++     +   Y+SL+ +Y+ +G  ++   I  ++ S   + 
Sbjct: 602 IYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRP 661

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  VI +  + G+ ++A  ++ E +      D    NI + +Y++ +  E A    
Sbjct: 662 DRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELV 721

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             +VT+G KP   T+  +  GY + G++
Sbjct: 722 RYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 152/347 (43%), Gaps = 27/347 (7%)

Query: 157 AEAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVT 211
           AEA AL++          P P    Y  +++ +   G+  D V    + +     P +VT
Sbjct: 158 AEASALLDA--------APGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVT 209

Query: 212 YNLWLAACASQND--KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           YN+ L   +      KE  E     +K+  + PD  +Y+TL S   +  L ++AA    E
Sbjct: 210 YNVVLHVYSKMAVPWKEVVE-LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDE 268

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+      ++V ++SLL +Y      DE + + ++M  +    +   Y  +ISS VK G 
Sbjct: 269 MKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E+A  +  E E      D      L++      +++ A   Y+ +V  G KP   T+  
Sbjct: 329 LEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNA 388

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVT 446
           L   +  +G+  +++  F +   +   +VPD      + A + +     ++ G   +   
Sbjct: 389 LIKMHGVRGKFPEMMAVFDELRSA--GFVPDIVTWNTLLAVFGQNGLDSEVSG---VFKE 443

Query: 447 LRNAGHVST-EIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAET 490
           ++ AG++   + Y SL+ +Y++ G   + + I +RM +  +  D  T
Sbjct: 444 MKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 3/190 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L++S V N   AE   L  +   C      L  N M+++Y  N  + KV ++L  +K++ 
Sbjct: 566 LVNSKVNNLAEAEKAFLELRQKRCSLDINVL--NAMVSIYGKNRMVRKVEKILSLMKESA 623

Query: 206 -SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +    TYN  +   +   D E  E    E+K + + PD  SY+T+   Y +    ++A+
Sbjct: 624 INLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEAS 683

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM+    + + V Y+  +  Y +    +E + + + M++   K N+  Y  ++   
Sbjct: 684 RLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743

Query: 325 VKLGEFEKAE 334
            + G+   A+
Sbjct: 744 CRNGKLTDAK 753


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 155/348 (44%), Gaps = 14/348 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K ALE+C+ M        V  D   H  ++S ++     S A ++FE
Sbjct: 85  NNVINACGAAGNWKKALELCKKMTENG----VGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYI 186
            +       DT +   ++H  V+  +  EA  L   M E    KCP   + Y  +++ Y 
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE-RRTKCPPDVVTYTSIMHSYC 199

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             GQ++    +   +  +   P++V YN  L A AS+     A   F  +KK  + PD +
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           SY++L + Y +   PEKA     +M+K +C+ N+V+Y++L+  Y + G   E + +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                + +    + ++++  +  +  + E I +   S     +    N  + +Y++    
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           E A   Y  +    +KP   T+ +L  G  K G+  + L  F+  + S
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS 427



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 137/352 (38%), Gaps = 41/352 (11%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           D    ++  Y ++ +  +A  L  +M E         YN +++ +   GQ      ++++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+    P   TYN  + AC +  + + A +   ++ +  + PD ++++ + S       
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--NDAEY 317
             KA +  + M+      +    + ++     +G   E + ++  M     K   +   Y
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++ S    G+ E  + I+D   +     +    N LL AY +R     A + +N +  
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            G++P   ++  L   Y +  Q EK  E F                     NK++     
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVF---------------------NKMK----- 285

Query: 438 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMD 487
                     +N+   +   YN+L+  Y  AG  K  + ++  M+KD +Q D
Sbjct: 286 ----------KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 11/331 (3%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-----QLDKVPQML 198
           SAL+ +Y ++  + EA  ++E M   G     + YN +++     G      L    QML
Sbjct: 248 SALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQML 307

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           Q+      PD  T+N  LAAC+     E A   F E+       D  +Y+T      K  
Sbjct: 308 QD---GLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 364

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   + +ME    + N V YS+L+  ++ +   DE L++ +KM SL  +++   Y 
Sbjct: 365 NMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYN 424

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +++  VK G++++   + +E E +    D    N L+  Y  + +L+M       +  +
Sbjct: 425 TLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQ 484

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P   T+  L   Y K G        +     S  K   D  L ++  + L + G ++
Sbjct: 485 GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLK--ADVVLFSSFIDTLAKNGLVE 542

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
            A  LL  +   G   +   YN+++  + K+
Sbjct: 543 CALSLLDEMMKMGIKPNVVTYNTIIDAFGKS 573



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 122/294 (41%), Gaps = 13/294 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D I K   +  A     ++      P+  T S L+  + + +K  EA  L EKM 
Sbjct: 353 YNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMK 412

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
                   + YN +L +Y+  G+ D++  + +E++K     D VTYN  +     Q   +
Sbjct: 413 SLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLD 472

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
                  +++   + P  ++YSTL  +Y K  +   A     + ++   + + V +SS +
Sbjct: 473 MVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFI 532

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF-EKAENIYD-EWESIS 344
                 G  +  L +  +MM +  K N   Y  +I +  K   F E+  +I D     + 
Sbjct: 533 DTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVY 592

Query: 345 GTGDPRVPNILLAAYINRNQLEMAES--------FYNRLVTKGIKPCYTTWELL 390
           G    RV N ++    +   + M  S         + ++V +G++P   T+  +
Sbjct: 593 GGQVVRVTNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAI 646



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 139/375 (37%), Gaps = 53/375 (14%)

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           RGL SA + F     ++ GP+    +L       KSA       +  E  +   PL    
Sbjct: 154 RGLGSALSSFRG---ELLGPEDYCQILRGLGDRDKSAL------RAFEVFYAALPL---- 200

Query: 181 MLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
                +  G +DK   +   +  L K   PD+                  A +AF     
Sbjct: 201 -----VGGGAVDKGKLLTAAIGALGKMGRPDL------------------ARRAFDTGIA 237

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
                   ++S L S Y +  L  +A   L+ M+    R   V+Y++++      G    
Sbjct: 238 GSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLR 297

Query: 298 -VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L  +++M+      +   +  ++++  + G  E A  ++DE   +    D    N  +
Sbjct: 298 FTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFV 357

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
            A      + +A      +     KP   T+  L  G+ K  + ++ L+  ++ + S+R 
Sbjct: 358 DAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALK-LREKMKSLRI 416

Query: 417 WVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
                +L    YN L     + G  D    +   +   G    T  YNSL+  Y K G++
Sbjct: 417 -----QLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRL 471

Query: 472 PLI--IVERMQKDNV 484
            ++  +V+ M+   V
Sbjct: 472 DMVAFLVQDMRAQGV 486


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 136/298 (45%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ +    G L+KV ++  E+    N  PD VTY+  ++A       ++A + F E+
Sbjct: 201 YNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEM 260

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+TL  +Y K++  EKA   +KEM+ + C      Y+  +      G  
Sbjct: 261 KENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRV 320

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D+  R++  M+    K +      +I+ L K+G  E    ++ + ES     +    N +
Sbjct: 321 DDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTV 380

Query: 356 LAAYIN-RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + A    +     A S++ ++   GI P   T+ +L  G+ K  ++EK L   ++     
Sbjct: 381 IKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEM--DE 438

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  N L +    + A  L + L+ N GH S  +Y  +++ + K G++
Sbjct: 439 KGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRL 496



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 103/244 (42%), Gaps = 38/244 (15%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A ++FE +      P   T S L+  + +  +  +A  L+E+M E GF  CP  Y  +
Sbjct: 392 SEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSL 451

Query: 182 LN-------------LYIS----------------------NGQLDKVPQMLQELKK-NT 205
           +N             L++                        G+L +   +  E++K  +
Sbjct: 452 INSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGS 511

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV  YN  ++        + A+     + +    PD  S++ + +   +  +P++A  
Sbjct: 512 KPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIE 571

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
              +M+    + + V+Y+++L   ++ G  +E  ++ ++M     + N+  YT ++ ++ 
Sbjct: 572 MFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVG 631

Query: 326 KLGE 329
           K+ E
Sbjct: 632 KVDE 635



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 3/192 (1%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S +  L  K ++  KA +   +++ R C+     Y+S++ +    G+ ++V  I+ +M +
Sbjct: 167 SEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCN 226

Query: 308 LFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 D   Y+ +IS+  KLG ++ A  ++DE +        ++   LL  Y   +++E
Sbjct: 227 DGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVE 286

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A      +  KG      T+     G  K G+++     F   I    K  PD  LI +
Sbjct: 287 KALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCK--PDVVLINS 344

Query: 427 AYNKLEEQGDID 438
             N L + G ++
Sbjct: 345 LINILGKVGRLE 356



 Score = 38.9 bits (89), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P   TY++ +      N  E A     E+ +    P   +Y +L +   K++  E A  
Sbjct: 407 APSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANE 466

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
              E+++     +   Y+ ++  +   G   E + ++ +M  L +K +   Y  ++S +V
Sbjct: 467 LFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMV 526

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           + G  ++A+++    +    + D    NI+L         + A   + ++ +  IKP
Sbjct: 527 RAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKP 583


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 153/368 (41%), Gaps = 8/368 (2%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +S +  +  A  +++ + +K   P+  T   L+H Y       +AE L+ +M   G    
Sbjct: 533 LSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              Y  +L  Y  +  L+KV   L+  L+K   PD   Y + +   +S    + A     
Sbjct: 593 DFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLS 652

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            ++K  + PD + Y +L S + K    EKA   L EM K+        Y++L+  +    
Sbjct: 653 VIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSD 712

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                  I+  ++      N   YT +I    K G+   A ++Y+E  +     D  V +
Sbjct: 713 DISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYS 772

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L A   N   L+ A      ++ +G     +++  L  G+ K+G++++ ++     +  
Sbjct: 773 VLAAGCSNSGDLQQALFITEEMIARGYA-IISSFNTLVHGFCKRGKLQETVKFLHVMMD- 830

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL--RNAGHVSTEIYNSLLRTYAKAGKM 471
            +  VP    +      L E G +  A  + V L  +NA H  T+  +SL       G +
Sbjct: 831 -KDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLV 889

Query: 472 PLIIVERM 479
           PL ++  M
Sbjct: 890 PLDVIHNM 897



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 1/226 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+ ++  Y     L+   ++++E+++   S +VVTYN  +         E A     E++
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME 305

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +Y  + +   K   P++A   L EM       N V YS+L+  +   G  D
Sbjct: 306 DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD 365

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  +I K+M +   + N   Y  +I  L KLG   +A  I  +   I    D    N+++
Sbjct: 366 EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVI 425

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             ++ ++  E A    N +   GI P   T+ ++  G  + G+ E+
Sbjct: 426 EGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESER 471



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 162/385 (42%), Gaps = 39/385 (10%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T  A+++   +  +  +A+ L+++MS  G +   + Y+ +++ ++  G  D+  ++
Sbjct: 311 PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKI 370

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++E+      P+ +TY+  +           A +   ++ K     D ++Y+ +   +++
Sbjct: 371 VKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLR 430

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E+A   L EM K     N   YS +++    +G  +    + ++M++   K N   
Sbjct: 431 QHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFV 490

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +IS   + G F  A     +    + T D    N L+    N  +++ A  +Y+ ++
Sbjct: 491 YAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEML 550

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEK----------------------VLECFKKA---- 410
            KG +P   T+  L  GY   G +EK                      +LE + K+    
Sbjct: 551 EKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLE 610

Query: 411 -IGSVRK------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLL 462
            + S  K       +PD+RL     + L   G +  A  +L  +   G V    IY SL+
Sbjct: 611 KVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLI 670

Query: 463 RTYAKAGKM--PLIIVERMQKDNVQ 485
             + KA  M   + +++ M K  ++
Sbjct: 671 SGFCKAADMEKAVGLLDEMAKKGIE 695



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 180/456 (39%), Gaps = 51/456 (11%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           +++    G   +K   + ++R L KL R   A  + + M     I  ++     +L +  
Sbjct: 371 VKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMT---KIGYMADTMTYNLVIEG 427

Query: 119 KIRGLSSAENFFENLPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
            +R  +  E F   L ++MR     P+  T S +++   Q  +S  A  L+E+M   G  
Sbjct: 428 HLRQHNKEEAFL--LLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLK 485

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACAS---------- 221
                Y  +++ Y   G      + L+++ ++N +PD+  YN  +   ++          
Sbjct: 486 PNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEY 545

Query: 222 ----------QND---------------KETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
                      ND                E AE+   ++  + ++P+   Y+ +   Y K
Sbjct: 546 YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFK 605

Query: 257 MELPEKAATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            +  EK ++TLK M EK     NR+ Y  ++   ++ G+    + +   +       +  
Sbjct: 606 SDNLEKVSSTLKSMLEKGLMPDNRL-YGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +IS   K  + EKA  + DE             N L+  +   + +  A + +N +
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           + KG+ P   T+  L  GY K G +   ++ + + +       PD  + +         G
Sbjct: 725 ICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEML--TEGVAPDAFVYSVLAAGCSNSG 782

Query: 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           D+  A  +   +   G+     +N+L+  + K GK+
Sbjct: 783 DLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKL 818



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 4/181 (2%)

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           + F+E     I PD  +YSTL   Y K+   E A   ++EM +  C  N V Y++L+   
Sbjct: 231 RGFME--GAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGL 288

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
              G  +E    +KK M  +  + D   Y  +I+ L K G  ++A+ + DE        +
Sbjct: 289 CRAGAIEEAFG-YKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPN 347

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             V + L+  ++ +   + A      +   G++P   T++ L  G  K G+M +     K
Sbjct: 348 VVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK 407

Query: 409 K 409
           +
Sbjct: 408 Q 408


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 155/342 (45%), Gaps = 22/342 (6%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +TC++LL  +++  ++  A  L  +M           +N M+N+    G+L K    +  
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++ +   P++VTYN  +    S    E A+     +K+ KI+PD  +Y +L S   K   
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGR 306

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-------YKDEVLR--IWKKMMSLFA 310
            E+A+   +EM ++  R + V Y++L+  + N G       YKDE+L+  I   M     
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTM----- 361

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
               + Y  +I +L      ++AE +  E +    + D    NIL+  Y      + A  
Sbjct: 362 ----STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFL 417

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            ++ ++  GIKP   T+  L     KK +M++  + FKK   +    +PD  +  A  + 
Sbjct: 418 LHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI--TSEGVLPDAIMFNALIDG 475

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                ++ GA  LL  +        E+ +N++++ + + GK+
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/362 (18%), Positives = 159/362 (43%), Gaps = 6/362 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + ++++ K   L  A++F  ++      P+  T + ++H Y  + +   A+A++  M 
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
                     Y  +++     G+L++  ++ +E+ +K   P  V YN  +    ++ + +
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     E+ K  I P   +Y++L       +  ++A   +KE++++    + + Y+ L+
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y       +   +  +M++   K     YT ++  L K    ++A++++ +  S    
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  + N L+  + + + ++ A      +    + P   T+  +  G+ ++G++E+  E 
Sbjct: 464 PDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAREL 523

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           F +     R   PDH       +    +GDI  A  +   + + G   T + YN+L++  
Sbjct: 524 FDEM--KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 466 AK 467
            K
Sbjct: 582 CK 583



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 147/351 (41%), Gaps = 7/351 (1%)

Query: 49  VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           V A  +   TM++ K E  +   +    ++  + K  R + A ++ E M +Q  ++  + 
Sbjct: 272 VEAADAILTTMKRQKIEPDS---FTYGSLISGMCKQGRLEEASKIFEEM-VQKGLRPSAV 327

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKM 166
            Y   +D       L  A  + + +  K   P   T ++L+H+    +++ EAE +++++
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDK 225
            E G     + YN ++N Y       K   +  E L     P   TY   L   + +N  
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A+  F ++    + PD I ++ L   +      + A   LK+M++     + V ++++
Sbjct: 448 KEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  +   G  +E   ++ +M     K +   +  +IS   + G+ + A  + +E      
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
                  N L+       + ++AE     +V+KG+ P  TT+  L  G  K
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++LLH   +  +  EA+ L +K++  G L   + +N +++ + SN  +    ++L+++
Sbjct: 433 TYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDM 492

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +    PD VT+N  +     +   E A + F E+K+  I PD IS++TL S Y +    
Sbjct: 493 DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDI 552

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM         + Y++L+         D    + K+M+S     +D  Y  +
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 321 ISSLVKLGEFEKAENIYDE 339
           I  + K+       NI DE
Sbjct: 613 IEGIAKV-------NIPDE 624



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 135 DKMRGPD---TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D+M+ P    T + ++  + +  K  EA  L ++M   G     + +N +++ Y   G +
Sbjct: 493 DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDI 552

Query: 192 DKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
               ++  E L    +P V+TYN  +       + + AE+   E+    + PD  +Y TL
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 251 TSLYIKMELPEKAATT 266
                K+ +P++   T
Sbjct: 613 IEGIAKVNIPDENKNT 628


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 13/278 (4%)

Query: 207 PDVVTYNLWLAACASQND--KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
           P V++YN  L A        K +AE+ + E+ ++++ P+  +Y+ L   +  +   +K  
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EME+  C  N V Y++L+  Y  MG  DE   + K M S   + N   Y  +I+ L
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G  ++A  I +E      T D    N LL  Y        A   +  +V  G+ P  
Sbjct: 295 CREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSV 354

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+  L     K   + + +E F +    +R   P+ R  T   +    QG ++ A  +L
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQM--RIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 412

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQK 481
             +  +G   + + YN+ +  +         ++ERM++
Sbjct: 413 NEMTESGFSPSVVTYNAFIHGHC--------VLERMEE 442



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 134/322 (41%), Gaps = 3/322 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ +Y +  +  EA  L++ MS  G     + YN ++N     G + +  ++L+E+
Sbjct: 251 TYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  +PD VTYN  L     + +   A     E+ +  + P  ++Y+ L +   K    
Sbjct: 311 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 370

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     +M  R  R N   Y++L+  ++  G  +E  RI  +M       +   Y   
Sbjct: 371 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 430

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I     L   E+A  +  E        D    + +++ +  + +L+ A      +V KG+
Sbjct: 431 IHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV 490

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G  +  ++ +  +  ++ +       PD    T   N    +GD++ A
Sbjct: 491 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD--MGLPPDEFTYTTLINAYCVEGDLNKA 548

Query: 441 EHLLVTLRNAGHVSTEIYNSLL 462
            HL   + + G +   +  S+L
Sbjct: 549 LHLHDEMIHKGFLPDAVTYSVL 570



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 151/357 (42%), Gaps = 6/357 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  +  A    +++  K   P+  S   +++   +     EA  ++E+M 
Sbjct: 252 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMG 311

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             GF    + YN +LN Y   G   +   +  E+ +N  SP VVTY   + +     +  
Sbjct: 312 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLN 371

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F +++   + P+  +Y+TL   + +  L  +A   L EM +     + V Y++ +
Sbjct: 372 RAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             +  +   +E L + ++M+      +   Y+ +IS   + GE ++A  +  E      +
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    + L+       +L  A      ++  G+ P   T+  L   Y  +G + K L  
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 551

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
             + I   + ++PD    +   N L +Q     A+ LL  L     V +++ Y++L+
Sbjct: 552 HDEMIH--KGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLI 606



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 54/316 (17%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  + K +    A+E  + M ++  ++     Y   +D  S+   L+ A      + + 
Sbjct: 360 LINSMCKARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES 418

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P   T +A +H +   ++  EA  ++++M E G     + Y+ +++ +   G+LD+ 
Sbjct: 419 GFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRA 478

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLA----------AC------------------------ 219
            QM QE+ +K  SPD VTY+  +           AC                        
Sbjct: 479 FQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 538

Query: 220 -ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
              + D   A     E+      PD ++YS L +   K     +A   L ++       +
Sbjct: 539 YCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS 598

Query: 279 RVAYSSLLSLYTNMGYKD---------------EVLRIWKKMMSLFAKMNDAEYTCVISS 323
            V Y +L+   +N+ +K                E  R+++ M+    K  +A Y  +I  
Sbjct: 599 DVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHG 658

Query: 324 LVKLGEFEKAENIYDE 339
             + G   KA N+Y E
Sbjct: 659 HCRGGNLPKAFNLYKE 674


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 172/370 (46%), Gaps = 19/370 (5%)

Query: 109 DYAVHLDLISKIRGLSSAENF---FENLPDKMRG---PD--TCSALLHSYVQNKKSAEAE 160
           D A++  LIS   G S A++F   F+ L + ++    P   T + ++    +  ++ +A 
Sbjct: 44  DDAIYNALIS---GYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAV 100

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC 219
            L+++M + G       YN ++       +LD+  +ML+E+  +   PDVVTYN ++   
Sbjct: 101 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A K    L +  + PD +SY+T+ +   K    + A+  L +M  R C  + 
Sbjct: 161 CKCDRVDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDV 217

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V YSSL+  +   G  +  + +   M+ L  + N   Y  ++ +L +LG   KAE++  E
Sbjct: 218 VTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE 277

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            E    T D    N  +       +++ A++ ++R+V +G  P  +++ +L     KK +
Sbjct: 278 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKE 337

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-- 457
           ++  +   ++A    +  + D  L T   + L + G  D A  L   + +      ++  
Sbjct: 338 LDDAITLVEQA--REKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFF 395

Query: 458 YNSLLRTYAK 467
           YN +L ++ K
Sbjct: 396 YNVMLDSHCK 405



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 6/231 (2%)

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD  +++ L     +    EKA   L  M++  C  +   Y++L+S Y+      +  + 
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
             +M+          YT ++  L K G  + A  + DE      + +    N+++     
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
             +L+ A+     +  +G  P   T+     G  K  ++++     +K +  +    PD 
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA----RKFLARM-PVTPDV 182

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              T   N L + GD+D A  +L  + N G     + Y+SL+  + K G++
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEV 233



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 21/288 (7%)

Query: 190 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           QL+K  Q+L  +K+    PD   YN  ++  +   D   A K   E+ K    P  ++Y+
Sbjct: 25  QLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYT 84

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            +     K    + A   L EM  + C  N   Y+ ++         DE  ++ ++M   
Sbjct: 85  NIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 144

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRN 363
               +   Y   I  L K    ++A               P  P++     ++       
Sbjct: 145 GYFPDVVTYNSFIKGLCKCDRVDEARKFLARM--------PVTPDVVSYTTVINGLCKSG 196

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA--IGSVRKWVPDH 421
            L+ A    +++  +G  P   T+  L  G+ K G++E+ +        +G     V  +
Sbjct: 197 DLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 256

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
            L+ A    L   G I  AE +LV +   G     + YN+ +    KA
Sbjct: 257 SLLGA----LHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 134/366 (36%), Gaps = 61/366 (16%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY---DIKLVSGD 109
           + A     +  E G T +    + +V EL K K    A+ + E    +Y   DI L    
Sbjct: 304 KKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILL---- 359

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC 169
           Y V LD      GL     F E            +  L S V ++K  E +         
Sbjct: 360 YTVLLD------GLCKGGRFDE------------ACALFSKVLDEKICEPDVFF------ 395

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229
                   YN ML+ +    Q+DK  Q+ +++ +    +VVT+N+ +      +    AE
Sbjct: 396 --------YNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAE 447

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS-- 287
              L +      PD+++Y TL     K      A    +E  K  C  + V YS+L++  
Sbjct: 448 TMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGL 507

Query: 288 LYTNMGYKDEVL------RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           ++ NM  +  +L       +W  M+  +A+    +    +   V+L E +   N     +
Sbjct: 508 VHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLG--LKLFVELIESDVEPNARTFGK 565

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
            ISG              +    L  A   ++R V  G  P       L   + K G +E
Sbjct: 566 EISGK------------LVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLE 613

Query: 402 KVLECF 407
           +    F
Sbjct: 614 EARRIF 619


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 19/376 (5%)

Query: 108 GDYAVH--------LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSA 157
           GD A+H        + + ++   L+ A    E  P     PD    +AL+ ++ +  +  
Sbjct: 146 GDRALHHPRVLPTAIRVFARAGCLAEASAILEAAP----APDASAYTALVSAFSRAGRFR 201

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
           +A A+ ++M + G     + YN + + Y   +    +V  ++  +K++    D  TYN  
Sbjct: 202 DAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTL 261

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           ++ C  +     A + F E+K    +PD +++++L  +Y K    E+A   LK ME   C
Sbjct: 262 ISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGC 321

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + V Y+SL+S Y   G  +E L + ++M     K +   YT +IS L ++G+ + A  
Sbjct: 322 TPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALA 381

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
            Y E      + +    N L+  +  R +     + ++ L + G  P   TW  L   + 
Sbjct: 382 TYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFG 441

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVS 454
           + G   +V   FK+   +   ++P+     +  +     G  D A  +   +  AG +  
Sbjct: 442 QNGLDSEVSGVFKEMKKA--GYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPD 499

Query: 455 TEIYNSLLRTYAKAGK 470
              YN++L   A+ G+
Sbjct: 500 ISTYNAVLSALARGGR 515



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 171/377 (45%), Gaps = 51/377 (13%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PDK+    T ++LL  Y + +K  EA  ++++M   G     + YN +++ Y+ +G L++
Sbjct: 288 PDKV----TFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEE 343

Query: 194 VPQMLQELK-KNTSPDVVTYNLWL----------AACASQND------------------ 224
             ++ QE++ +   PDVVTY   +          AA A+ ++                  
Sbjct: 344 ALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIK 403

Query: 225 ------KETAEKA-FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 K T   A F +L+     PD ++++TL S++ +  L  + +   KEM+K     
Sbjct: 404 LHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIP 463

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
            R  Y SL+S Y+  G  D+ + I+K+M+      + + Y  V+S+L + G +E+AE ++
Sbjct: 464 ERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLF 523

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E        D    + LL AY N  +L+  ++    +  + I+     W + T   +  
Sbjct: 524 AEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIE--RHNWLVKTLVLVNN 581

Query: 398 -----GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
                 + EK  +  ++   S+   V +  +     NK+ ++ +    E L + + N+ +
Sbjct: 582 KVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVE----EVLSLMMENSIN 637

Query: 453 VSTEIYNSLLRTYAKAG 469
            S   YNSL+  Y++ G
Sbjct: 638 HSAATYNSLMHMYSRLG 654



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 144/357 (40%), Gaps = 42/357 (11%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           F++L      PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y  
Sbjct: 418 FDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSR 477

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G  D+  ++ + + +    PD+ TYN  L+A A     E AEK F E+      PD +S
Sbjct: 478 CGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELS 537

Query: 247 YSTLTSLYI------KME------------------------------LPEKAATTLKEM 270
           YS+L   Y       KM+                              LPE      +E+
Sbjct: 538 YSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPE-TEKAFQEL 596

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            +R C  +    ++++S+Y       +V  +   MM      + A Y  ++    +LG+ 
Sbjct: 597 RRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDC 656

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           EK E+I  E +S     D    N ++ AY  + Q++ A   ++ +   G+KP   T+ + 
Sbjct: 657 EKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 716

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
              Y+     E+ ++  +  +   +   P+ R   +        G +  A+  L  L
Sbjct: 717 IKSYVANIMFEEAIDLVRYLV--TQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNL 771



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           +K+  L   E  F+ L  +    D    +A++  Y +NK   + E ++  M E       
Sbjct: 581 NKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSA 640

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++++Y   G  +K   +L E+K +   PD  +YN  + A   +   + A + F E
Sbjct: 641 ATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSE 700

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           +K + + PD ++Y+     Y+   + E+A   ++ +  + CR N   ++S+L  Y+  G
Sbjct: 701 MKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHG 759


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 133 LPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           L D+MRG +      TC+ +++   +  +++E++  ++K+ + GF+   + YN +++ ++
Sbjct: 525 LYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFV 584

Query: 187 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G ++    +  E+ K   SP+V TY   +      N+ + A K   E+K   I+ D  
Sbjct: 585 KEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVT 644

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
            Y  L   + +      A+  L E+++     N+V YSS++S +  +   +  L + K+M
Sbjct: 645 VYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRM 704

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           ++     +   YT +IS L+K G+   A  +Y E  +     D    ++L+    N+ QL
Sbjct: 705 INEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQL 764

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           E A+     +  K + P    +  L  G+ K+G +++      + +   +  VPD
Sbjct: 765 ENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLD--KGLVPD 817



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 154/382 (40%), Gaps = 50/382 (13%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           LL+SYV+ K+  +A      + E   + C    N  L+  + N  + +   +  ++  K 
Sbjct: 160 LLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKG 219

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              D  T ++ + A   +   E AE  F E K   ++ D  +YS +     K      A 
Sbjct: 220 VKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAAL 279

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             L+EM  +    + V ++ ++ +    G   E +++  +M+S    MN    T ++   
Sbjct: 280 GLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGY 339

Query: 325 VKLGEFEKAENIYD------------------EWESISGTGD---------------PRV 351
            K G+ + A  ++D                  EW   +G  D               P V
Sbjct: 340 CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTV 399

Query: 352 PNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            N+  L+  Y+     E A   ++  V  GI   +T   LL+W   K+G+M +    ++K
Sbjct: 400 FNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSW-LCKEGKMSEACSIWEK 458

Query: 410 AIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
               VRK V   R    +YN +     +QGD+D A  + V +   G     I Y+ L+  
Sbjct: 459 M---VRKGV---RPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDG 512

Query: 465 YAKAG--KMPLIIVERMQKDNV 484
           Y K G  +    + +RM+ +N+
Sbjct: 513 YFKKGDTEYAFGLYDRMRGENI 534



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/398 (18%), Positives = 155/398 (38%), Gaps = 58/398 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMS 167
           YAV ++   K   +  A   +  + +K   P     ++L+  Y++ +   EA  L ++  
Sbjct: 367 YAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAV 426

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
            CG       YN +L+     G++ +   + +++ +K   P VV+YN  +     Q D +
Sbjct: 427 ACGIANV-FTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMD 485

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +A   F+E+ +  + P                                   N + YS L+
Sbjct: 486 SANGVFVEMLEKGLKP-----------------------------------NLITYSVLM 510

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC--VISSLVKLGEFEKAENIYDEWESIS 344
             Y   G  +    ++ +M      +  +++TC  +I+ L K G   +++   D  + + 
Sbjct: 511 DGYFKKGDTEYAFGLYDRMRG--ENIAPSDFTCNIIINGLCKAGRTSESQ---DRLKKLV 565

Query: 345 GTGDPRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             G   +P     N ++  ++    +  A + Y  +   G+ P   T+  L  G+ K   
Sbjct: 566 QEG--FIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNN 623

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IY 458
           M+  L+   +      +   D  +  A  +    +GD+  A  LL  L+  G    + +Y
Sbjct: 624 MDLALKVMDEMKNKGIEL--DVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVY 681

Query: 459 NSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           +S++  + K   M   L + +RM  + +  D +    L
Sbjct: 682 SSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTL 719


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 172/382 (45%), Gaps = 15/382 (3%)

Query: 99  LQYDIKLVSGDYAVHLDLISKIRG-LSSAENFFENLPD--KMRGPDTCSALLHSYVQNKK 155
           L Y + L +G   ++L  +S  R  L      F   P        ++ + L++S  +  K
Sbjct: 66  LNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGK 125

Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN- 213
             EA  L+ +M   G +   + Y  +++ Y   G+L KV Q+++E++ K   P++ TY+ 
Sbjct: 126 IREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSS 185

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + L  C S    E  EK   E+ K  + PD + Y+TL   + K+   + A     EME R
Sbjct: 186 IILLLCKSGKVVE-GEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR 244

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + +A+S+L+   +  G   E  +++ +M+    + ++  YT +I    KLGE +KA
Sbjct: 245 EIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKA 304

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             ++++   I  T +      L        +L+ A    + +  KG++   +T+  +  G
Sbjct: 305 FFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNG 364

Query: 394 YLKKG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
             K G   Q  K++E  K+A        PD    T   +   + G++  A  LL  + + 
Sbjct: 365 LCKAGNILQAVKLMEEMKEA-----GLHPDTITYTTLMDAYYKTGEMVKARELLREMLDR 419

Query: 451 GHVSTEI-YNSLLRTYAKAGKM 471
           G   T + +N L+     +GK+
Sbjct: 420 GLQPTVVTFNVLMNGLCMSGKL 441



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 126/287 (43%), Gaps = 5/287 (1%)

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           +YN+ + +         A    + ++     PD +SY+T+   Y  +   +K    +KEM
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           + +  + N   YSS++ L    G   E  ++ ++MM      +   YT +I    KLG  
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           + A  ++ E E+     D    + L+       ++  A+  +N ++ KG +P   T+  L
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTAL 291

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RN 449
             GY K G+M+K      + +       P+    TA  + L + G++D A  LL  + R 
Sbjct: 292 IDGYCKLGEMKKAFFLHNQMVQI--GLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 450 AGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
              ++   YN+++    KAG +   + ++E M++  +  D  T   L
Sbjct: 350 GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTL 396



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 160/392 (40%), Gaps = 24/392 (6%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L +L + + A  +   ME +  I  V   Y   +D    +  L       + + 
Sbjct: 114 NILMNSLFRLGKIREAHHLLMRMEFKGCIPDVV-SYTTIIDGYCHVGELQKVVQLVKEMQ 172

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
            K   P+  T S+++    ++ K  E E ++ +M + G     + Y  +++ +   G   
Sbjct: 173 LKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQ 232

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++  E++ +   PD + ++  +   +       A+K F E+ K   +PD ++Y+ L 
Sbjct: 233 AAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALI 292

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K+   +KA     +M +     N V Y++L       G  D    +  +M     +
Sbjct: 293 DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQ 352

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           +N + Y  +++ L K G   +A  + +E +      D      L+ AY    ++  A   
Sbjct: 353 LNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAREL 412

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI--TAAYN 429
              ++ +G++P   T+ +L  G    G++E            + KW+ +  ++   A YN
Sbjct: 413 LREMLDRGLQPTVVTFNVLMNGLCMSGKLEDG--------ERLLKWMLEKGIMPNAATYN 464

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
            + +Q            +RN   +STEIY  +
Sbjct: 465 SIMKQ----------YCIRNNMRISTEIYRGM 486


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 130/289 (44%), Gaps = 3/289 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ ++ +  ++A+A  +   M + G +   + YN +++     G++D+  ++L+++
Sbjct: 337 TYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +K   PD  TYN+ +   +S    E A   F  +K+ K  PD ++Y+TL +   K+   
Sbjct: 397 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A     EM+   C  +   + +L+      G  ++ L    +++ +    N   Y  +
Sbjct: 457 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNAL 516

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   + G+ +K   ++ +    S   D     IL+  +  R    MA      +V +G 
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 576

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
            P   T+ +L       GQ+E     FK+ I   + + PD +  +A  N
Sbjct: 577 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIA--KGFNPDMQTYSALPN 623



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 182/456 (39%), Gaps = 50/456 (10%)

Query: 59  MRKWKEEGHT-VHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHL 114
            R+ K+EG    +    + +V  L K+ R   AL V + M    L+ D+ +   +  +H 
Sbjct: 148 FRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVC--NTLIHC 205

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
               ++  L  A     ++       D  T   L++++ +  +  E  + ME     G  
Sbjct: 206 --TCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCA 263

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + YN ++  +I  G+L +  Q+ +  + K + PDV TYNL +A C S+  +E A   
Sbjct: 264 LSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEE-ALTL 322

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F E ++  +  D  +YS L   + K     KA      M+K  C  + V Y+ L+S    
Sbjct: 323 FQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGK 382

Query: 292 MGYKDEVLRI----------------------------WKKMMSLFAKM-------NDAE 316
            G  DE L +                            ++K  S F  M       +   
Sbjct: 383 QGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVT 442

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +++ L KL   ++A +++DE ++     D      L+       ++E A     RLV
Sbjct: 443 YNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLV 502

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
             G  P    +  L  G+ + GQ++K  E F+  I       PD    T        +G 
Sbjct: 503 KMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIEC--SCFPDSITYTILVLGFSRRGH 560

Query: 437 IDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
              A  LL  +   GH  +   YN L+R+ + AG++
Sbjct: 561 TSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 596



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 11/297 (3%)

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEK 262
           + +PDVV YN  +A      D + A   F  LK+     P+ +S+ TL     KM     
Sbjct: 120 DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 179

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    +EM     + +    ++L+     +G   +  R+   M +     +   Y  +++
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIK 381
           +  + G+  +  + + E     G     V  N ++  +I   +L  A   +   +TK   
Sbjct: 240 AHCRAGQMHEVAS-FMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV 298

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   T+ LL     K  Q+E+ L  F++A  G V   V  +  +  A+ K    G    A
Sbjct: 299 PDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGK---AGRAAKA 354

Query: 441 EHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             +   ++ AG +  T +YN L+    K GK+   L ++E M +  +  D  T  ++
Sbjct: 355 LEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIV 411



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 6/207 (2%)

Query: 50  YAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           Y K  +   M K ++    V  Y  N ++  L+KL+R   A ++ + M+    +  ++  
Sbjct: 421 YEKAYSFFGMMKRRKHSPDVVTY--NTLLNGLKKLRRTDEACDLFDEMQANKCMPDLT-T 477

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           +   +D ++K   +  A      L      P++   +AL+  + ++ +  +   L + M 
Sbjct: 478 FGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMI 537

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           EC      + Y  ++  +   G      ++LQE+ ++  +P + TYN+ + + +     E
Sbjct: 538 ECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVE 597

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSL 253
            A   F E+     +PD  +YS L +L
Sbjct: 598 DAYTLFKEMIAKGFNPDMQTYSALPNL 624



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 84  LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD-- 141
           +KR KH+ +V  +  L              L+ + K+R    A + F+ +      PD  
Sbjct: 431 MKRRKHSPDVVTYNTL--------------LNGLKKLRRTDEACDLFDEMQANKCMPDLT 476

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+ +  +  +  +A     ++ + G       YN +++ +  +GQ+DK  ++ Q++
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM 536

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT-SLYIKMEL 259
            + +  PD +TY + +   + +     A +   E+ +    P   +Y+ L  SL +  ++
Sbjct: 537 IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 596

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            E A T  KEM  +    +   YS+L +L T
Sbjct: 597 -EDAYTLFKEMIAKGFNPDMQTYSALPNLST 626


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 159/379 (41%), Gaps = 11/379 (2%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCS----ALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++ K   L  A   FE L    + P  C+     ++  Y    K  EA  L+E+    G 
Sbjct: 64  VLCKANRLDEAVELFEQLEQNRKVP--CAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGS 121

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
           +   + YN +L       ++++  ++ +E+K++  P+V TYN+ +     +     A + 
Sbjct: 122 IPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEI 181

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
             ++++  + P+ ++ + +     K +  E+A +  + M+ + C  N V +SSL+     
Sbjct: 182 RDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGK 241

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  D+   +++KM+          YT +I S  K G  E    IY E      + D  +
Sbjct: 242 CGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTL 301

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N  +       + E   + +  +   G  P   ++ +L  G +K G   +  E F    
Sbjct: 302 INTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAM- 360

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
              +  V D     A  +   + G ++ A  LL  ++  GH  T + Y S++   AK  +
Sbjct: 361 -KEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 419

Query: 471 M--PLIIVERMQKDNVQMD 487
           +    ++ E  + + ++++
Sbjct: 420 LDEAYMLFEEAKSNGIKLN 438



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 134/300 (44%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A + FE + DK+  P+  T S+L+    +  +  +A +L EKM +C
Sbjct: 199 IMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC 258

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
           G +   + Y  ++  +   G+ +   ++ +E+     SPD+   N ++       + E  
Sbjct: 259 GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 318

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+      PD  SYS L    +K  L  +       M+++ C  +  AY++++  
Sbjct: 319 RALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 378

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M           Y  VI  L K+   ++A  +++E +S     +
Sbjct: 379 FCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 438

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             V + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++ + L CF+
Sbjct: 439 VVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 498



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 111/272 (40%), Gaps = 36/272 (13%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           S L+H  V+   + E   L   M E G +     YN +++ +  +G+++K  Q+L+E+K 
Sbjct: 338 SILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV 397

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----- 257
           K   P VVTY   +   A  +  + A   F E K   I  + + YS+L   + K+     
Sbjct: 398 KGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDE 457

Query: 258 ------ELPEKAAT------------------------TLKEMEKRTCRKNRVAYSSLLS 287
                 EL +K  T                          + M+   C  N++ YS L++
Sbjct: 458 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILIN 517

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               +   ++    W++M  L  K N   YT +IS L K G   +A  ++  +++  G  
Sbjct: 518 GLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIP 577

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           D    N ++    + N+   A + +     KG
Sbjct: 578 DSASYNAMIEGLSSANKAMDAYALFEETRLKG 609


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 156/349 (44%), Gaps = 7/349 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           + + +E G        N ++  L K +    AL+    ME + ++      + + +D + 
Sbjct: 82  LEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVIT----WTIMIDGLC 137

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K   L  A  +F  +  K   P+  T + L++ + +  K   A  L+++M E G     +
Sbjct: 138 KANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVV 197

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y+ +++ +    ++D   ++ +++ +N   P++VTYN  L+        + A +   E+
Sbjct: 198 TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM 257

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           ++  + PD  SY TL +   K    + A    ++     C  + VAYS+L++     G  
Sbjct: 258 RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRL 317

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           DE  ++++KM     + +   +T ++  L K    ++A+ + +  E  + T +    + L
Sbjct: 318 DEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSL 377

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           +       Q+  A+  + R++ +GI+P   T+  L  G+     ++  L
Sbjct: 378 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 160/385 (41%), Gaps = 9/385 (2%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + K   +  A   FE+  +    PD    S L+    +  +  EA  L EKM E      
Sbjct: 276 LCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPD 335

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + +  +++      +L +  Q+L+ ++ +N +P+V+TY+  +           A++ F 
Sbjct: 336 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +    I+P+ ++Y++L   +      + A   ++EM    C  + + Y++L+      G
Sbjct: 396 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTG 455

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E  R++  M + F   +   Y+C+I    KL   + A  ++D+    +   D    +
Sbjct: 456 RAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFS 515

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+  Y N   ++ AE     +V     P   T+  L  G+ K G+M +     K+   +
Sbjct: 516 TLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM--A 573

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP 472
            R   P+    TA  +     G    A  LL  +   G     I Y SL+  +   G + 
Sbjct: 574 KRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLE 633

Query: 473 LI--IVERMQKD-NVQMDAETQKVL 494
               I+ER+++D N + D    +V+
Sbjct: 634 EARKILERLERDENCKADMFAYRVM 658



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 165/427 (38%), Gaps = 45/427 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++   K+  +  A    + + +    P+  T S ++H + +  K   A  L  +M 
Sbjct: 164 YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 223

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK------------------------ 203
           E G +   + YN +L+    NG +D+  ++L E+++                        
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283

Query: 204 ------------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                       +  PDVV Y+  +A        + A K F ++++   +PD ++++ L 
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K +  ++A   L+ ME R C  N + YSSL+      G   +   ++K+M+    +
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  +I         + A  + +E  +     D    N L+       +   A   
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  +  K   P   T+  L  G+ K  +++     F   +   +  +PD    +      
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK--QAVLPDVVTFSTLVEGY 521

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
              G +D AE LL  +  A   S ++  Y SL+  + K G+M     +++RM K   Q +
Sbjct: 522 CNAGLVDDAERLLEEMV-ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 580

Query: 488 AETQKVL 494
             T   L
Sbjct: 581 VVTYTAL 587



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 140/339 (41%), Gaps = 21/339 (6%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI--------SNGQLDK 193
           T + ++    ++    +A  L+E+M E G    P+P   + N  I        +   LD 
Sbjct: 61  TYAVVIQGLCKSGDLDKACELLEEMRESG----PVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 194 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
              M  E +KN    V+T+ + +      N    A   F ++KK    P+  +Y+ L + 
Sbjct: 117 FRSM--ECEKN----VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLING 170

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + K+    +A   LKEM++     N V YS+++  +      D   +++++M+      N
Sbjct: 171 FCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPN 230

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  ++S L + G  ++A  + DE        D    + L+A      +++MA   + 
Sbjct: 231 LVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE 290

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
                   P    +  L  G  K G++++  + F+K         PD    TA  + L +
Sbjct: 291 DNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM--RENSCEPDVVTFTALMDGLCK 348

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              +  A+ +L T+ +       I Y+SL+    K G++
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 387



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 131/327 (40%), Gaps = 21/327 (6%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +    +   ++D+   +L+       +P+V TY + +       D + A +   E++
Sbjct: 27  YNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMR 86

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           ++   PD   Y+ +     K     KA    + ME   C KN + ++ ++          
Sbjct: 87  ESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME---CEKNVITWTIMIDGLCKANRLP 143

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-- 354
           E    + KM       N+  Y  +I+   K+ +  +A  +  E +  SG      PN+  
Sbjct: 144 EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKE-SGLA----PNVVT 198

Query: 355 ---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              ++  +  + +++ A   + ++V  G  P   T+  L  G  + G M++  E   +  
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM- 257

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
              R   PD          L + G ID A  +     N G    ++  Y++L+    KAG
Sbjct: 258 -RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN-GDCPPDVVAYSTLIAGLCKAG 315

Query: 470 KM--PLIIVERMQKDNVQMDAETQKVL 494
           ++     + E+M++++ + D  T   L
Sbjct: 316 RLDEACKLFEKMRENSCEPDVVTFTAL 342


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 6/282 (2%)

Query: 107 SGDYAVHLDLISKIRG-LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
           S D+ +H  + S  +G L  A + F  L  +   P   TC+A L + V+  +   A  + 
Sbjct: 149 SSDFLIHTFITSPAQGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVF 208

Query: 164 EKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACAS 221
           ++M E   +      Y  M+      G++D   +ML EL +    P VVTYN+ + A   
Sbjct: 209 DEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCK 268

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               E A +    +++  + P  +++  L +   + E   +    L+EME+     N V 
Sbjct: 269 SGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVI 328

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y+ L+  +   G+  + LR++ +M+    K     Y  +  +L K GE E+AE I ++  
Sbjct: 329 YNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDML 388

Query: 342 SISGTGDPRVPNILLAAYINRN-QLEMAESFYNRLVTKGIKP 382
           SI  T    + N ++A  + R  +LE   S  N +VT+G++P
Sbjct: 389 SIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRP 430



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 124/281 (44%), Gaps = 3/281 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H   + K   EA  +++ M   G     + YN M+     + ++++  ++  ++
Sbjct: 469 TSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM 528

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   PD+ T+N  L A  +    E       ++K   + PD +SY T+   + K +  
Sbjct: 529 TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDI 588

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA   L E+  R  + N   Y++L+  Y   G     +   + M S   +  +  Y  +
Sbjct: 589 RKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSL 648

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  +   G  E+A+ I+ +    +         I++  Y    ++  A +++  + ++GI
Sbjct: 649 MYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGI 708

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
            P   T+  L + Y K G  E+  + F + +GS    +PD+
Sbjct: 709 SPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGS--GVIPDN 747



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 1/250 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++    ++ K  EA  L   M+  GF      +N +L+ Y + G++++   +L ++
Sbjct: 504 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD+V+Y   +       D   A++   EL    + P+   Y+ L   Y +    
Sbjct: 564 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDI 623

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   ++ M+    +   V Y SL+    + G  +E   I+ +       +    YT +
Sbjct: 624 SGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIM 683

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    KLG+  +A   ++E  S   + +      L+ AY      E A   ++ +V  G+
Sbjct: 684 IQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGV 743

Query: 381 KPCYTTWELL 390
            P   T+  L
Sbjct: 744 IPDNITYGTL 753



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   ++  + + K   +A+  + ++ + G       YN ++  Y  NG +      
Sbjct: 570 PDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDA 629

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++ +K N   P  VTY   +         E A+  F + ++  +D   I Y+ +   Y K
Sbjct: 630 VETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCK 689

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +    +A    +EM  R    N++ Y++L+  Y+  G  +E  +++ +M+      ++  
Sbjct: 690 LGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNIT 749

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           Y  +I+   ++   +K      E  S + T D R+ NIL
Sbjct: 750 YGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNIL 788



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPE 261
           +   P + T N +L A       + A + F E+++++ +  +  SY+ +     K    +
Sbjct: 179 RGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVD 238

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
                L E+ +   +   V Y+ L+      G  +E  R+  +M       +   +  +I
Sbjct: 239 AGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILI 298

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + L +   F +   +  E E +  + +  + N L+  +  +     A   ++ +V K +K
Sbjct: 299 NGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMK 358

Query: 382 PCYTTWELLTWGYLKKGQMEK 402
           P   T+ L+     K+G+ME+
Sbjct: 359 PTAVTYNLIAKALCKEGEMER 379


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 149/335 (44%), Gaps = 16/335 (4%)

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           E L  K   PD  T +AL++++V+  K  EAE L ++M   G +   + Y+ M++ +   
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            +LD    M   +  K  SPD++T+N  +A        +   K   E+ +  +  + I+Y
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-- 305
           +TL   + ++     A   L+EM       N V  ++LL    + G   + L ++K M  
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459

Query: 306 --MSLFAK--MNDAE-----YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             M + A    N  E     Y  +IS L+  G+F +AE +Y+E        D    N ++
Sbjct: 460 SKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVI 519

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                +++L+ A   ++ + +K   P   T+  L  GY K G+++  LE F +     R 
Sbjct: 520 HGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM--GRRG 577

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
            V +        +   + G+I+GA  +   +  +G
Sbjct: 578 IVANAITYITLIHGFRKVGNINGALDIFQEMMASG 612



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 53/361 (14%)

Query: 181 MLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           M+N + S+G+  +  Q+LQE+  +K  SPDVVTYN  + A   +     AE+ + E+   
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I P  I+YS++   + K    + A      M  + C  + + +++L++ Y      D+ 
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES-------------ISG 345
           +++  +M       N   YT +I    ++G+   A+++  E  S             + G
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 346 TGD-------------------------------PRVP--NILLAAYINRNQLEMAESFY 372
             D                               P V   NIL++  IN  +   AE  Y
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 500

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             +  +GI P   T+  +  G  K+ ++++  + F  ++GS + + P+    T   N   
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF-DSMGS-KSFSPNVVTFTTLINGYC 558

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAE 489
           + G +D    L   +   G V+  I Y +L+  + K G +   L I + M    V  D  
Sbjct: 559 KAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTI 618

Query: 490 T 490
           T
Sbjct: 619 T 619



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 125/294 (42%), Gaps = 24/294 (8%)

Query: 193 KVPQMLQELKKNT----SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           K+P  L    K T     P VVT++  L     ++    A   F ++ K    P+ ++++
Sbjct: 128 KLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK----PNVVTFT 183

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL +   +     +A   L  M +   + N++ Y +++     MG     L + +KM  +
Sbjct: 184 TLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 243

Query: 309 -FAKMNDAEY-----TCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYIN 361
              K N   +     TC+I+     G + +A+ +  E  E    + D    N L+ A++ 
Sbjct: 244 SHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVK 303

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD- 420
             +   AE  Y+ ++ +GI P   T+  +  G+ K+ +++     F   + + +   PD 
Sbjct: 304 EGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFY--LMATKGCSPDI 361

Query: 421 --HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                + A Y + +    +D    LL  +  AG V+  I Y +L+  + + G +
Sbjct: 362 ITFNTLIAGYCRAKR---VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 92/212 (43%), Gaps = 14/212 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +    ++  L++A++  + +      P+  TC+ LL     N K  +A  + + M 
Sbjct: 399 YTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 458

Query: 168 EC-----------GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLW 215
           +            G       YN +++  I+ G+  +  ++ +E+  +   PD +TYN  
Sbjct: 459 KSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSV 518

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +     Q+  + A + F  +      P+ ++++TL + Y K    +       EM +R  
Sbjct: 519 IHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI 578

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
             N + Y +L+  +  +G  +  L I+++MM+
Sbjct: 579 VANAITYITLIHGFRKVGNINGALDIFQEMMA 610


>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
 gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 154/342 (45%), Gaps = 10/342 (2%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  +VR  ++LK++    E+ EW+  Q+       D+ + +    K+   S AE   + +
Sbjct: 108 LGTLVR-FKQLKKWNIVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYM 166

Query: 134 PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
             K   P   S   L+ +Y + K+  +AEA+  +M   G    P+ Y  +L   +   + 
Sbjct: 167 NKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPEPSPVTYQIILKSLVEGDKY 226

Query: 192 DKVPQMLQEL--KKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            +   + ++L  +K TS  PD   +++ +       D   A K F ++ + KI    +++
Sbjct: 227 KEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPLSTVTF 286

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           ++L S     +   + ++   +M++   + + V+YS L+  Y     ++E L ++++M+ 
Sbjct: 287 NSLMSFETDYK---EVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLD 343

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     Y  ++ +    G  ++A  ++          D      ++ AY+N + +  
Sbjct: 344 AGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNG 403

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           AE F+ R+   G+KP    +  L  GY K   +EKV+  +++
Sbjct: 404 AEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMRVYER 445



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 2/227 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWL 216
           E  ++ ++M   G     + Y+ ++  Y    + ++   + +E L     P   +YN+ L
Sbjct: 298 EVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILL 357

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
            A A     + A   F  +++ +++PD  SY+T+   Y+       A    + ++    +
Sbjct: 358 DAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLK 417

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N V Y +L+  Y+ +   ++V+R++++M     + N   YT ++ +  +  +F  A   
Sbjct: 418 PNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIW 477

Query: 337 YDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGIKP 382
           + E E+     D +  NILL+ A     Q E  E   N  +   +KP
Sbjct: 478 FKEMEARGYPPDQKAKNILLSLANTPEEQQEANELVGNGAIQLEVKP 524


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 122/269 (45%), Gaps = 1/269 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H   +N    +   + EKM E G       YN ++N +  +G+     ++  E+
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  S ++VTYN  +     +     A K   ++K   I+P+ I+Y+TL   +  +   
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA +  ++++ R    + V Y+ L+S +   G      ++ K+M     K +   YT +
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTIL 414

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  ++   EKA  +    E +  T D    ++L+  +  + Q+  A   +  +V K +
Sbjct: 415 IDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKL 474

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +P    +  +  GY K+G   + L  F++
Sbjct: 475 EPNKVIYNTMVLGYCKEGSSYRALRLFRE 503



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 148/354 (41%), Gaps = 7/354 (1%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            ++++YVQ++    + +   +M + GF+     +N++L   + +   ++  +   E K  
Sbjct: 99  VMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIK 158

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              DV ++ + +  C    + E +    +EL++    P+ + Y+TL     K    EKA 
Sbjct: 159 VDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAK 218

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM K     N   Y+ L+      G K +   +++KM       N   Y CV++  
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQH 278

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A  ++DE      + +    N L+       +   A    +++ + GI P  
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 385 TTWELLTWGYLKKGQMEKVLE-CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            T+  L  G+   G++ K L  C       +   +  + ++ + + K   +GD  GA  +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK---KGDTSGAGKV 395

Query: 444 LVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVER--MQKDNVQMDAETQKVL 494
           +  +   G   ++I Y  L+ T+A+   M   I  R  M++  +  D  T  VL
Sbjct: 396 VKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVL 449



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 1/251 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +  K+ EA  +M++M   G     + YN +++ +   G+L K   + ++L
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  SP +VTYN+ ++    + D   A K   E+++  I P  I+Y+ L   + +M+  
Sbjct: 365 KSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNM 424

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA      ME+     +   YS L+  +   G  +E  R++K M++   + N   Y  +
Sbjct: 425 EKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTM 484

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    K G   +A  ++ E E      +      ++       + + AE    +++  GI
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGI 544

Query: 381 KPCYTTWELLT 391
            P  +   L++
Sbjct: 545 DPSDSILNLIS 555


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 159/373 (42%), Gaps = 10/373 (2%)

Query: 45  LLSLVYAKRS----AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           L+ + YAKR     A  T    +  G   + +    +V      +  +  L   E M+ +
Sbjct: 274 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAE 333

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAE 158
             I+L    Y++ +   +KI    SA+N F+    K+   +    S ++H++ Q+     
Sbjct: 334 -GIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDR 392

Query: 159 AEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL 216
           AE L+ +M E G +  P+  Y+ M++ Y       K   + + LK+   +P +++Y   +
Sbjct: 393 AEELVREMEEDG-IDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLI 451

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                      A     E++   I  +  +YS L S +I +     A +  +EM K   +
Sbjct: 452 NLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQ 511

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            +R  Y+ L+  +  MG  D  +RI +KM     + ++  +  +I      G+ ++A NI
Sbjct: 512 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNI 571

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            D              N L+   I +NQ+E A S  N++   GI P   T+ ++  GY  
Sbjct: 572 LDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAA 631

Query: 397 KGQMEKVLECFKK 409
            G + K  E F K
Sbjct: 632 NGDIGKAFEYFTK 644



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 153/414 (36%), Gaps = 76/414 (18%)

Query: 130 FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           FE +P   R       ++  Y +      A A  E M   G       +  +++ Y    
Sbjct: 261 FERIPKPSR--REFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAR 318

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
            +  V   ++E+K +     +VTY++ +A  A  ND ++A+  F E K    D + I YS
Sbjct: 319 DMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYS 378

Query: 249 TLTSLYIKMELPEKAATTLKEME----------------------------------KRT 274
            +   + +    ++A   ++EME                                  K  
Sbjct: 379 NIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKEC 438

Query: 275 C-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           C   + ++Y  L++LY  +G   + + I K+M S   K N+  Y+ +IS  + L +F  A
Sbjct: 439 CFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANA 498

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYI-----------------------NRNQLEMAES 370
            +I++E        D  + N+L+ A+                        NR    + E 
Sbjct: 499 FSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEG 558

Query: 371 F------------YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418
           F             + +   G  P   T+  L  G +KK Q+E+ +    K   S+    
Sbjct: 559 FAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKM--SIAGIT 616

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           P+    T         GDI  A      ++  G  +   IY +LLR   K+G+M
Sbjct: 617 PNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRM 670



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 97/238 (40%), Gaps = 1/238 (0%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
           +++ M   G     + YN +++  I   Q+++   +L ++     +P+  TY + +   A
Sbjct: 571 ILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYA 630

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
           +  D   A + F ++K+  +  D   Y TL     K    + A    +EM  +   +N  
Sbjct: 631 ANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTF 690

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y+ L+  +   G   E   + K+M       N   YT  I++  K G+ ++A+ + +E 
Sbjct: 691 VYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEM 750

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
             +    + +    L+  +   +  + A   +  +   G+KP    +  L    L + 
Sbjct: 751 ADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRA 808



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/283 (18%), Positives = 112/283 (39%), Gaps = 7/283 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P    + L +   A + DK  A   F  ++   I+P+   +++L   Y          + 
Sbjct: 267 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSC 326

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           ++EM+        V YS +++ +  +        ++K+  +    +N   Y+ +I +  +
Sbjct: 327 VEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQ 386

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  ++AE +  E E           + ++  Y      +     + RL      P   +
Sbjct: 387 SGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIIS 446

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           +  L   Y+K G++ K +   K+     ++     + ++ + +  L    D   A  +  
Sbjct: 447 YGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLH---DFANAFSIFE 503

Query: 446 TLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
            +  +G      IYN L+  + K G M   + I+E+MQK+ +Q
Sbjct: 504 EMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQ 546


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 171/385 (44%), Gaps = 21/385 (5%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G  +A   F  L +K   P   TC+ LL S V+  +  ++  + E M + G       ++
Sbjct: 259 GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFS 317

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
             +N +   G+++   Q+  +++K   SP+VVTYN  +       + + A +   ++ K 
Sbjct: 318 TAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD 377

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            ++   I+YS L +  +K+E   +A + LKE  ++    N V Y++L+  Y  MG   + 
Sbjct: 378 GVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDA 437

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           LRI   M+S     N      +I    K+G+ E+AE I +E  S   + +P     ++  
Sbjct: 438 LRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHW 497

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE----CFKKAIGSV 414
               ++ E A  F   ++ + ++P       L  G  K+G+    +E      +K  G+ 
Sbjct: 498 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA- 556

Query: 415 RKWVPDHRLIT--AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                   L+T  A  + L + G++  A  LL  +   G V  +I YN+L+    K GK+
Sbjct: 557 -------NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 609

Query: 472 P--LIIVERMQKDNVQMDAETQKVL 494
                +   M K  ++ D  T  +L
Sbjct: 610 EEGFKLRGEMVKQGIEPDTFTYNLL 634



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 36/297 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H   +     EA  L++KM E GF+   + YN +++     G++++  ++  E+
Sbjct: 560 TTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM 619

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+   PD  TYNL +         + A   + E K   + P+  +Y  +   Y K +  
Sbjct: 620 VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKI 679

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
           E+      E+  +    N V Y++L+  Y   G   E  ++   M               
Sbjct: 680 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 739

Query: 306 ---MSLFAKMNDAE-----------------YTCVISSLVKLGEFEKAENIYDEWESISG 345
              M    +M DA+                 YT +I    KLG+ +K  N+  E  S   
Sbjct: 740 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             +     +++  Y     ++ A    + +V KGI P   T+ +LT G+ K+G++E+
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 856



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 161/413 (38%), Gaps = 46/413 (11%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           +G   +   LN I++   K+ + + A  + E M L     +  G +   +  +       
Sbjct: 447 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEM-LSRGFSINPGAFTTIIHWLCMNSRFE 505

Query: 125 SAENFF-ENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           SA  F  E L   MR  D   + L+    +  K ++A  L  ++ E GF    +  N ++
Sbjct: 506 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 565

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +     G + +  ++L++ L++    D +TYN  ++ C  +   E   K   E+ K  I+
Sbjct: 566 HGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIE 625

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD  +Y+ L                        CR               +G  DE + +
Sbjct: 626 PDTFTYNLLI--------------------HGMCR---------------IGKLDEAVNL 650

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W +  S     N   Y  +I    K  + E+ E ++ E  + +   +  V N L+ AY  
Sbjct: 651 WNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR 710

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVP 419
                 A   ++ + +KGI P   T+  L  G    G+ME      K  I  +RK   +P
Sbjct: 711 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA----KCLIDEMRKEGLLP 766

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +    TA      + G +D   ++L  + +   H +   Y  ++  Y+K+G M
Sbjct: 767 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/285 (18%), Positives = 116/285 (40%), Gaps = 4/285 (1%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           + A   ++K  E G  + K   N ++    K  + +   ++   M ++  I+  +  Y +
Sbjct: 575 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM-VKQGIEPDTFTYNL 633

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +  + +I  L  A N +     +   P+  T   ++  Y +  K  E E L  ++    
Sbjct: 634 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 693

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
                + YN ++  Y  NG   +  ++  +++ K   P   TY+  +    +    E A+
Sbjct: 694 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAK 753

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
               E++K  + P+ + Y+ L   Y K+   +K    L+EM       N++ Y+ ++  Y
Sbjct: 754 CLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY 813

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           +  G      ++  +M+      +   Y  + +   K G+ E+ +
Sbjct: 814 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGK 858


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 140 PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PDT  C+ +L  Y +     +A AL EK  E G    P  YN  ++        +K  Q+
Sbjct: 453 PDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQL 512

Query: 198 LQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L   LK+N  PDVV Y+  ++  A + + E A   F+++ K  I  +  +Y+ L +L+I 
Sbjct: 513 LPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFIS 572

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               + A    K M++     +++AY+SL++ + N G       ++ +M       N   
Sbjct: 573 DCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVT 632

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YTC I+  +KL +  +A  +Y++ +      D  +  +L+AA+ N  ++  AE+ ++ + 
Sbjct: 633 YTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMK 692

Query: 377 TKG-IKPCYTTWELLTWGYL---KKGQMEKVLE 405
            +G   P    +  L   Y+   K+ Q EK+ E
Sbjct: 693 QEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYE 725



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 168/403 (41%), Gaps = 11/403 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A+   ++ +  G   + Y  + ++    K  R   ALEV E M+    +  V   Y++ +
Sbjct: 334 ASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVY-SYSILI 392

Query: 115 DLISKIRGLSSAENFFENLPDKMRGP---DTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           D   +   + SA  F+E +      P   + CS L+  Y ++K+ A A      M + G 
Sbjct: 393 DGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCS-LIKGYYKSKQFANALKEFRIMQKLGM 451

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEK 230
               +  NH+L++Y      +K   + ++ ++N    +  +YN ++      +  E A +
Sbjct: 452 WPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQ 511

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               + K  + PD ++YSTL S + K    EKA     +M K     N   Y+ L++L+ 
Sbjct: 512 LLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFI 571

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           +    D   R++K M       +   YT +++     GE  +A  ++DE      + +  
Sbjct: 572 SDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVV 631

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-- 408
                +  Y+  N+   A   Y ++  +G+ P    + +L   +   G+M +    F   
Sbjct: 632 TYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEM 691

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           K  G     V  +  +  +Y KL ++   D AE L   +R  G
Sbjct: 692 KQEGRCTPNVVMYTCLINSYIKLNKR---DQAEKLYEEMRAKG 731



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/388 (18%), Positives = 154/388 (39%), Gaps = 41/388 (10%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F+ + +    PD  + S L+  + +  +  +A  + ++M   G L     Y+ 
Sbjct: 296 LDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSI 355

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +   G++DK  ++ +E+K +   PDV +Y++ +     + D ++A K + E+    
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNN 415

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-------- 291
             P   +Y +L   Y K +    A    + M+K     + +A + +LS+Y          
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKAL 475

Query: 292 ---------------MGYKDEVLRIWK-----KMMSLFAKM-------NDAEYTCVISSL 324
                            Y + + RI +     K + L   M       +   Y+ +IS  
Sbjct: 476 ALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCF 535

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K    EKA  ++ +   +  T + +   IL+  +I+  ++++A   +  +    + P  
Sbjct: 536 AKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQ 595

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             +  L  G+   G+M +    F +   S     P+    T   N+  +    + A  L 
Sbjct: 596 IAYTSLVAGFCNTGEMTRARALFDEM--SREGCSPNVVTYTCFINEYLKLNKNNQAHKLY 653

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             ++  G    +I Y  L+  +   G+M
Sbjct: 654 EKMKERGVYPDQILYTMLIAAFCNTGEM 681



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 5/207 (2%)

Query: 179 NHMLNLYI----SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
           NH  N  I      G LD+  ++ +E+K +   PDV +Y++ +     +   + A + F 
Sbjct: 280 NHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFK 339

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++ + I P+  SYS L   + K    +KA    +EM+      +  +YS L+  +   G
Sbjct: 340 EMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKG 399

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D  ++ W++M S     +   Y  +I    K  +F  A   +   + +    D    N
Sbjct: 400 DMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACN 459

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGI 380
            +L+ Y  +     A +   +    G+
Sbjct: 460 HILSIYCRKPDFNKALALSEKFQENGV 486



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 143/360 (39%), Gaps = 20/360 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLYI----SNGQLDK 193
           +C+ LL   V++ +      L E + + G    P P    Y  M+N +      +  + +
Sbjct: 173 SCNFLLKCLVEDNRVDGVRLLFEVLIKFG----PRPNIHTYTIMMNFFCRGVGCSVDIRR 228

Query: 194 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
             ++L ++     +P+VVTY  ++           A +    L +     +   ++ +  
Sbjct: 229 ASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIY 288

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              +  + ++A+   KEM+      +  +YS L+  +   G  D+   ++K+M +     
Sbjct: 289 GLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILP 348

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   Y+ +I    K G  +KA  +++E ++     D    +IL+  +  +  ++ A  F+
Sbjct: 349 NIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFW 408

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             + +    P    +  L  GY K  Q    L+ F + +  +  W PD        +   
Sbjct: 409 EEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEF-RIMQKLGMW-PDTIACNHILSIYC 466

Query: 433 EQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP---LIIVERMQKDNVQMDA 488
            + D + A  L    +  G H +   YN  +    + G +P   L ++  M K NV  D 
Sbjct: 467 RKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICR-GSVPEKALQLLPVMLKRNVLPDV 525



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 115/292 (39%), Gaps = 21/292 (7%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           V +++ +   AS +  E A   F+  K   I+ + +S + L    ++    +      + 
Sbjct: 137 VVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEV 196

Query: 270 MEKRTCRKNRVAYSSLLSLYT-NMGYKDEVLR---IWKKMMSLFAKMNDAEYTCVISSLV 325
           + K   R N   Y+ +++ +   +G   ++ R   I  K+       N   Y   I  L 
Sbjct: 197 LIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLC 256

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKG 379
           K+G F  A      W  I        P      N ++        L+ A   +  +   G
Sbjct: 257 KVGLFGVA------WRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSG 310

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I P   ++ +L  G+ +KG++++  E FK+   S    +P+    +   +   ++G +D 
Sbjct: 311 ILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNS--GILPNIYSYSILIDGFCKEGRVDK 368

Query: 440 AEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIV--ERMQKDNVQMDA 488
           A  +   ++N+G +     Y+ L+  + + G M   I   E M  +N    A
Sbjct: 369 ALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSA 420


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 193/430 (44%), Gaps = 27/430 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ---YDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           + +R+   + + K+Y   L++C+ MEL+   +++  +S    + ++   + R LS A + 
Sbjct: 74  DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS----IMINCCCRCRKLSLAFSA 129

Query: 130 FENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
              +      PDT   S L++      + +EA  L+++M E G     +  N ++N    
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           NG++ D V  + + ++    P+ VTY   L           A +   ++++ KI  D + 
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS +     K    + A     EME +  + + + Y++L+  +   G  D+  ++ + M+
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 +   ++ +I   VK G+  +AE ++ E      + D      L+  +   NQL+
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A    + +V+KG  P   T+ +L  GY K   ++  LE F+K   S+R  V D    T 
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM--SLRGVVAD----TV 423

Query: 427 AYNKL----EEQGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVE 477
            YN L     E G ++ A+ L   +V+ R    + +  Y  LL      G  +  L I E
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS--YKILLDGLCDNGEPEKALEIFE 481

Query: 478 RMQKDNVQMD 487
           +++K  +++D
Sbjct: 482 KIEKSKMELD 491



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 162/359 (45%), Gaps = 4/359 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
            A + + +  E G   ++     +++ + K  +   A+E+   ME +  IKL +  Y++ 
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME-ERKIKLDAVKYSII 253

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   L +A N F  +  K    D    + L+  +    +  +   L+  M +   
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + ++ +++ ++  G+L +  ++ +E+ ++  SPD VTY   +     +N  + A  
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +      P+  +++ L + Y K  L +      ++M  R    + V Y++L+  + 
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +G  +    ++++M+S   + +   Y  ++  L   GE EKA  I+++ E      D  
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG 493

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           + NI++    N ++++ A   +  L  KG+KP   T+ ++  G  KKG + +    F+K
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL++    N K ++A  L+++M E GF    + Y  +L +   +GQ     ++L+++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D V Y++ +         + A   F E++      D I Y+TL   +      
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +  A  L++M KR    + VA+S+L+  +   G   E   + K+M+      +   YT +
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K  + +KA ++ D   S     + R  NIL+  Y   N ++     + ++  +G+
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
                T+  L  G+ + G++E   E F++ +   R+  PD        + L + G+ + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVS--RRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 441 EHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
             +   + ++   +   IYN ++     A K+
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 155/342 (45%), Gaps = 22/342 (6%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +TC++LL  +++  ++  A  L  +M           +N M+N+    G+L K    +  
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++ +   P++VTYN  +    S    E A+     +K+ KI+PD  +Y +L S   K   
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGR 306

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-------YKDEVLR--IWKKMMSLFA 310
            E+A+   +EM ++  R + V Y++L+  + N G       YKDE+L+  I   M     
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTM----- 361

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
               + Y  +I +L      ++AE +  E +    + D    NIL+  Y      + A  
Sbjct: 362 ----STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFL 417

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            ++ ++  GIKP   T+  L     KK +M++  + FKK   +    +PD  +  A  + 
Sbjct: 418 LHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI--TSEGVLPDVIMFNALIDG 475

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                ++ GA  LL  +        E+ +N++++ + + GK+
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKV 517



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/362 (18%), Positives = 159/362 (43%), Gaps = 6/362 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + ++++ K   L  A++F  ++      P+  T + ++H Y  + +   A+A++  M 
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
                     Y  +++     G+L++  ++ +E+ +K   P  V YN  +    ++ + +
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     E+ K  I P   +Y++L       +  ++A   +KE++++    + + Y+ L+
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + Y       +   +  +M++   K     YT ++  L K    ++A++++ +  S    
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  + N L+  + + + ++ A      +    + P   T+  +  G+ ++G++E+  E 
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAREL 523

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           F +     R   PDH       +    +GDI  A  +   + + G   T + YN+L++  
Sbjct: 524 FDEM--KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 466 AK 467
            K
Sbjct: 582 CK 583



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 147/351 (41%), Gaps = 7/351 (1%)

Query: 49  VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           V A  +   TM++ K E  +   +    ++  + K  R + A ++ E M +Q  ++  + 
Sbjct: 272 VEAADAILTTMKRQKIEPDS---FTYGSLISGMCKQGRLEEASKIFEEM-VQKGLRPSAV 327

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKM 166
            Y   +D       L  A  + + +  K   P   T ++L+H+    +++ EAE +++++
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDK 225
            E G     + YN ++N Y       K   +  E L     P   TY   L   + +N  
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A+  F ++    + PD I ++ L   +      + A   LK+M++     + V ++++
Sbjct: 448 KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  +   G  +E   ++ +M     K +   +  +IS   + G+ + A  + +E      
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
                  N L+       + ++AE     +V+KG+ P  TT+  L  G  K
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++LLH   +  +  EA+ L +K++  G L   + +N +++ + SN  +    ++L+++
Sbjct: 433 TYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDM 492

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +    PD VT+N  +     +   E A + F E+K+  I PD IS++TL S Y +    
Sbjct: 493 DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDI 552

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM         + Y++L+         D    + K+M+S     +D  Y  +
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 321 ISSLVKLGEFEKAENIYDE 339
           I  + K+       NI DE
Sbjct: 613 IEGIAKV-------NIPDE 624



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 135 DKMRGPD---TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D+M+ P    T + ++  + +  K  EA  L ++M   G     + +N +++ Y   G +
Sbjct: 493 DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDI 552

Query: 192 DKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
               ++  E L    +P V+TYN  +       + + AE+   E+    + PD  +Y TL
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 251 TSLYIKMELPEKAATT 266
                K+ +P++   T
Sbjct: 613 IEGIAKVNIPDENKNT 628


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 184/417 (44%), Gaps = 26/417 (6%)

Query: 54  SAAITMRKWKEEGHTVHKYEL-NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           SA   +RK +E  H +    + N I+  L K  R+  A  +  ++E+Q   K +  D   
Sbjct: 235 SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNL--FIEMQE--KEIFPDIVT 290

Query: 113 HLDLISK--IRGL-SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           +  +I+   I G  S AE   + + ++   PD  T SAL++++V+  K  EAE L ++M 
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKE 226
               +   + Y+ M++ +    +LD    M      K  SPD++T+N  +A        +
Sbjct: 351 PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVD 410

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
              K   E+ +  +  + I+Y+TL   + ++     A   L+EM       N V  ++LL
Sbjct: 411 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 287 SLYTNMGYKDEVLRIWKKM----MSLFAK--MNDAE-----YTCVISSLVKLGEFEKAEN 335
               + G   + L ++K M    M + A    N  E     Y  +I  L+  G+F +AE 
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +Y+E        D    + ++     +++L+ A   ++ + +K   P   T+  L  GY 
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYC 590

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           K G ++  LE F +     R  V D    IT  Y    +  +IDGA  +   + ++G
Sbjct: 591 KAGMVDDGLELFCEM--GQRGIVADAITYITLIYG-FRKVDNIDGALDIFQEMISSG 644



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 146/331 (44%), Gaps = 15/331 (4%)

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVV 210
           ++ + ++A  L  +M E       + YN M+N +  +G+     Q+LQE L++  +PDVV
Sbjct: 265 KDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVV 324

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           T++  + A   +     AE+ + E+    I P  ++YS++   + K    + A       
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLT 384

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
             + C  + + +++L++ Y      D+ +++  +M       N   YT +I    ++G+ 
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 444

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL-----------VTKG 379
             A+++  E  S     +    N LL    +  +L+ A   +  +              G
Sbjct: 445 NAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNG 504

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           ++P   T+ +L  G + +G+  +  E +++     R  VPD    ++  + L +Q  +D 
Sbjct: 505 VEPDVQTYNILICGLINEGKFLEAEELYEEM--PHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           A  +  ++ +       + +N+L+  Y KAG
Sbjct: 563 ATQMFDSMGSKSFSPDVVTFNTLITGYCKAG 593



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 132/320 (41%), Gaps = 17/320 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D   K   L +AE+ F   P K   PD  T + L+  Y + K+  +   L+ +M+
Sbjct: 361 YSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 420

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G +   + Y  +++ +   G L+    +LQE+      P+VVT N  L         +
Sbjct: 421 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLK 480

Query: 227 TAEKAFLELKKTKID-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            A + F  ++K+K+D           PD  +Y+ L    I      +A    +EM  R  
Sbjct: 481 DALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + + YSS++         DE  +++  M S     +   +  +I+   K G  +    
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLE 600

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++ E        D      L+  +   + ++ A   +  +++ G+ P   T   +  G  
Sbjct: 601 LFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLW 660

Query: 396 KKGQMEK---VLECFKKAIG 412
            K ++E+   +LE  + ++G
Sbjct: 661 SKEELERAVAMLEDLQMSVG 680



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 14/286 (4%)

Query: 193 KVPQMLQELKKNT----SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           K+P  L    K T     P VVT+N  L     ++    A   F ++ K    P+ ++++
Sbjct: 131 KLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCK----PNVVTFT 186

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL +   +     +A   L  M +   + N++ Y +++     MG     L + +KM  +
Sbjct: 187 TLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 246

Query: 309 FAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              + N   Y  +I  L K G    A N++ E +      D    N ++  +    +   
Sbjct: 247 SHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSD 306

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           AE     ++ + I P   T+  L   ++K+G+  +  E + + +   R  +P     ++ 
Sbjct: 307 AEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLP--RSIIPSTVTYSSM 364

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            +   +Q  +D AEH+       G  S +I  +N+L+  Y +A ++
Sbjct: 365 IDGFCKQNRLDAAEHMFYLTPTKG-CSPDIITFNTLIAGYCRAKRV 409


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 18/360 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A LH  +    SA A AL   M       C   +N ML    S G+  +  ++L+++ +
Sbjct: 452 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 511

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEK 262
              P+ VTYN  +A   S+   + A     E++ +  I P+  +Y T+ S + K+   ++
Sbjct: 512 ---PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 568

Query: 263 AATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           A     EM  K   +   V Y++L+  Y + G  D  L    +M+     M  A Y  ++
Sbjct: 569 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 628

Query: 322 SSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +L   G   +A   Y+  E + G G   D    NIL+  +     ++ A   +  +  +
Sbjct: 629 HALFMDGRGTEA---YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 685

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDI 437
           G++    T+  L +   KKGQ+++  + F +A   VR+ + PD  L  A  N     G+I
Sbjct: 686 GVRATVVTYTALIYALSKKGQVQETDKLFDEA---VRRGIRPDLVLYNALINSHSTSGNI 742

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           D A  ++  +        ++ YN+L+R     G++     +++ M +  +Q D  T   L
Sbjct: 743 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 802



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 114/269 (42%), Gaps = 1/269 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           +AL+  Y    K   A    ++M E G       YN +++    +G+  +  ++++E+  
Sbjct: 590 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 649

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K  +PDV TYN+ +     + + + A + F  + +  +    ++Y+ L     K    ++
Sbjct: 650 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 709

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                 E  +R  R + V Y++L++ ++  G  D    I  +M       +D  Y  ++ 
Sbjct: 710 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 769

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L  LG  ++A  + DE        D    N L++ Y  +  ++ A    N ++ KG  P
Sbjct: 770 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 829

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              T+  L  G  K GQ +      K+ +
Sbjct: 830 TLLTYNALIQGLCKNGQGDDAENMVKEMV 858



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 1/249 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           L+H+   + +  EA  L+E+M   G       YN ++N +   G + K  ++ + + ++ 
Sbjct: 627 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 686

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
               VVTY   + A + +   +  +K F E  +  I PD + Y+ L + +      ++A 
Sbjct: 687 VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAF 746

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             + EMEK+    + V Y++L+     +G  DE  ++  +M     + +   Y  +IS  
Sbjct: 747 EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY 806

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G+ + A  I +E  +          N L+       Q + AE+    +V  GI P  
Sbjct: 807 SMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 866

Query: 385 TTWELLTWG 393
           +T+  L  G
Sbjct: 867 STYISLIEG 875



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+++  +  +  E + L ++    G     + YN ++N + ++G +D+  +++ E+
Sbjct: 693 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 752

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK  +PD VTYN  +         + A K   E+ +  I PD ++Y+TL S Y      
Sbjct: 753 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 812

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++L+      G  D+   + K+M+      +D+ Y  +
Sbjct: 813 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 872

Query: 321 ISSL 324
           I  L
Sbjct: 873 IEGL 876


>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
          Length = 600

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 59  MRKWKEEGHTVHKYELNRIVRE-------------LRKLKRYKHALEVCEWMELQYDIKL 105
           MR+ ++EG  V   +  R  +E              ++LK++    E+ EW+  Q+    
Sbjct: 79  MREIEQEGSAVPILKTQRNRKEPLPRDVILGTLIRFKQLKKWNIVSEILEWLRTQHWWDF 138

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALM 163
              D+ + +    K+   S AE   + +  K   P   S   L+ +Y + K+  +AEA+ 
Sbjct: 139 SEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVF 198

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTS--PDVVTYNLWLAAC 219
            +M   G    P+ Y  +L   +   +  +   + ++L  +K TS  PD   +++ +   
Sbjct: 199 RRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMY 258

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
               D   A K F ++ +  I    +++++L S   + +   + +    +M++   + + 
Sbjct: 259 KKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETEYK---EVSNIYDQMQRAGLKPDV 315

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V+YS L+  Y     ++E L ++++M+    +     Y  ++ +    G  E+A  ++  
Sbjct: 316 VSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRA 375

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   D      ++ AY+N +++  AE F+ R+   G+KP    +  L  GY K   
Sbjct: 376 MRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNN 435

Query: 400 MEKVLECFKK 409
           +EKV+  +++
Sbjct: 436 LEKVMRVYER 445



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 42/272 (15%)

Query: 126 AENFFENLPDKMRG---PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE+L ++ R    PD      +++ Y +    A+A  L  +MSE G     + +N 
Sbjct: 229 AEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 288

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTY---------------------------- 212
           +++      ++  +   +Q  +    PDVV+Y                            
Sbjct: 289 LMSFETEYKEVSNIYDQMQ--RAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGV 346

Query: 213 -------NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                  N+ L A A     E A   F  +++ +++PD  SY+T+   Y+       A  
Sbjct: 347 RPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEK 406

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             + +++   + N V Y +L+  Y+ +   ++V+R++++M     + N   YT ++ +  
Sbjct: 407 FFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQG 466

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           +  +F  A   + E E+     D +  NILL+
Sbjct: 467 RNSDFGNAVIWFKEMEARGYPPDQKAKNILLS 498


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 189/461 (40%), Gaps = 56/461 (12%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI-RG--LSSAENFFE 131
           N ++        +K AL VC+ M        V  D   H  ++S   RG   S   ++FE
Sbjct: 236 NNLINACGSSGNWKEALNVCKKMTENG----VGPDLVTHNIVLSAYKRGNQYSKVLSYFE 291

Query: 132 NLPDKMRGPDTCSALLHSYV-----QNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLY 185
            +      PDT +  +  Y      QN K+ +   ++ EK SEC      + +  +++LY
Sbjct: 292 LMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSEC--YPDVVTFTTIIHLY 349

Query: 186 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              GQ++         L +   P++V+YN  + A AS    + A   F E+KK    PD 
Sbjct: 350 SVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDV 409

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           +SY++L + Y K   PEKA    + M +  C+ N V+Y++L+  Y + G   E + I  +
Sbjct: 410 VSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHE 469

Query: 305 M------------MSLFA-----------------------KMNDAEYTCVISSLVKLGE 329
           M             +L A                       K+N   Y   I S + +GE
Sbjct: 470 MERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           ++KA ++Y    +     DP   N+L++     ++   A  F + ++   I      +  
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +   Y K+GQ+ +    F K    +    PD    TA  +  +   + + A  L + +  
Sbjct: 590 VICAYSKQGQVTEAESMFTKM--KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMET 647

Query: 450 AGHVSTEIY-NSLLRTYAKAGKMP--LIIVERMQKDNVQMD 487
                  I  +SL+R + K G+    L++ E M++  +  +
Sbjct: 648 DDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFN 688



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 149/334 (44%), Gaps = 5/334 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+ ++   +H+++V  WM+ Q +    +  Y + + L ++   +  A   F  +   
Sbjct: 132 LIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKW 191

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  T +AL++++ +  +   A  +M+ M           YN+++N   S+G   + 
Sbjct: 192 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 251

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             + +++ +N   PD+VT+N+ L+A    N        F  +K T I PD  + + +   
Sbjct: 252 LNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYC 311

Query: 254 YIKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+    KA      M EKR+ C  + V +++++ LY+  G  +     +  M++   K
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLK 371

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  +I +    G  ++A ++++E +      D      LL AY    + E A   
Sbjct: 372 PNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKV 431

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  +     KP   ++  L   Y  KG + + +E
Sbjct: 432 FELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVE 465



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 107/278 (38%), Gaps = 58/278 (20%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC----------------- 219
           YN  +  Y+S G+ DK   + + ++ K   PD VTYN+ ++ C                 
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMM 576

Query: 220 ------------------ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
                             + Q     AE  F ++K     PD I+Y+ +   Y   E  E
Sbjct: 577 DLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWE 636

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA+    EME    + + +A SSL+  +   G   +VL + + M       N++ +  ++
Sbjct: 637 KASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMV 696

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL-----------EMAES 370
           S          A ++  EW  I G      P+I + +    NQL            M + 
Sbjct: 697 S----------ACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKL 746

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           FY ++V  G +  + T+ +L    L  G   K +E  +
Sbjct: 747 FY-KIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQ 783



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 50/342 (14%)

Query: 189 GQLDKVPQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           G L+   Q+ + +K  KN       YN+ +   A  N  + A   F E++K +  PD  +
Sbjct: 140 GSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAET 199

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM- 305
           Y+ L + + +      A   + +M +     +R  Y++L++   + G   E L + KKM 
Sbjct: 200 YNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 259

Query: 306 ---------------------------MSLFAKM-------NDAEYTCVISSLVKLGEFE 331
                                      +S F  M       +      VI  LVKLG+  
Sbjct: 260 ENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNG 319

Query: 332 KAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           KA +I++  +       P V     ++  Y    Q+E  ++ +N ++ +G+KP   ++  
Sbjct: 320 KAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNA 379

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           L   Y   G  ++    F +    ++K  + PD    T+  N   + G  + A  +   +
Sbjct: 380 LIGAYASHGMDKEAFSVFNE----IKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 448 RNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
           R   H    +  YN+L+  Y   G +   + I+  M+++ VQ
Sbjct: 436 RR-NHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQ 476


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 16/338 (4%)

Query: 138 RGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDK 193
           R PD  TC+AL+     + ++AEA  ++   + CG    P  + YN M+  Y   GQLD 
Sbjct: 92  RRPDAGTCAALIKKLSASGRTAEARRVL---AACG----PDVMAYNAMVAGYCGAGQLDA 144

Query: 194 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             +++ E+     PD  TYN  +     +     A     E+ + +  PD ++Y+ L   
Sbjct: 145 ARRLVAEMP--VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 202

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             K    ++A   L EM  + C  + V Y+ +++     G  D+ +   K + S   + N
Sbjct: 203 TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 262

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  V+  L     +E AE +  E        +    N+L++    +  +E A     
Sbjct: 263 TVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE 322

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
           ++   G  P   ++  L   + K+ +M+K +      +   R   PD          L  
Sbjct: 323 QIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS--RGCYPDIVSYNTLLTALCR 380

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            G++D A  LL  L++ G     I YN+++    KAGK
Sbjct: 381 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 418



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 145/316 (45%), Gaps = 13/316 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ I +   +  A  F +NLP     P+T S   +L      ++  +AE LM +M 
Sbjct: 231 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG 290

Query: 168 ECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQN 223
           + G   CP   + +N +++     G ++   ++L+++ K   +P+ ++YN  L A   Q 
Sbjct: 291 QKG---CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQK 347

Query: 224 DKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
             + A  AFL+L  ++   PD +SY+TL +   +    + A   L +++ + C    ++Y
Sbjct: 348 KMDKA-MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISY 406

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           ++++   T  G   E L +  +M+S   + +   Y+ + + L +    E A   + + + 
Sbjct: 407 NTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQD 466

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           +    +  + N ++     R +   A   +  ++  G  P  +T+ +L  G   +G +++
Sbjct: 467 MGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKE 526

Query: 403 VLECFKKAI--GSVRK 416
             +   +    G VRK
Sbjct: 527 ARDLLDELCSRGVVRK 542


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 183/449 (40%), Gaps = 20/449 (4%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG-----DYAVHL 114
           R+  E+G     YE N +++ L + K+++ A+ +       +D+ + +G      Y   +
Sbjct: 353 RQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIAL-------FDLVVDTGVPDVFTYGCLI 405

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
             +SK   +  A N ++ + +    P   TC +LL  Y +     EA  L  +M   GF 
Sbjct: 406 HWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFP 465

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 231
              + Y  ++  YI     DK   +L E+ +N  S    TYN+ +      +     ++ 
Sbjct: 466 PNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEM 525

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
                     P  ++Y+++ + ++K  +   A    ++M ++    N V Y+S +  Y  
Sbjct: 526 LKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCR 585

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
               D  +++   M       + A Y   I+   K G    A +          T +  V
Sbjct: 586 TNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTV 645

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N  +  Y N   +  A  FY  ++ + I      +  L  G+ K G +   LE + + +
Sbjct: 646 YNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEML 705

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGK 470
            +    +PD +  TA  + L   GDIDGA+ LL  + R     +T  YN L+  + + GK
Sbjct: 706 AN--HNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDGK 763

Query: 471 M--PLIIVERMQKDNVQMDAETQKVLKIT 497
           +     + ++M    V  D  T  +  +T
Sbjct: 764 LQEAFQLHDKMLSSGVVPDDTTYNIFPLT 792



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 161/422 (38%), Gaps = 21/422 (4%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMEL----QYDIKLVSG-- 108
           A   + K +E G     +  N +V  L K+ R   AL + + M L    + D+ L +   
Sbjct: 242 AVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLM 301

Query: 109 -DYAVHLDLISKIRGLSSAENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKM 166
             Y +H + I K   L     F E + D +   + T + L+        + E   L  +M
Sbjct: 302 QGYCLHGE-IGKALDL-----FDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQM 355

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
            E G L     +N ++   + N Q +    +   +     PDV TY   +   +  +   
Sbjct: 356 IEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHKVH 415

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   + ++K+  + P  ++  +L   Y +    ++A     EM  +    N V Y++L+
Sbjct: 416 EAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLM 475

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y      D+   +  +M        +  Y  +I+ L  +    + + +   + S    
Sbjct: 476 KGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFV 535

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE- 405
                 N ++  ++    +  A + Y ++  KGI P   T+     GY +    +  ++ 
Sbjct: 536 PTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKL 595

Query: 406 -CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLR 463
             + +  G      PD     A  N   +QG++  A H LV L   G   +  +YNS + 
Sbjct: 596 LIYMRCNG----IHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVT 651

Query: 464 TY 465
            Y
Sbjct: 652 GY 653



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 14/242 (5%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           D   Y++ + AC        A + F E+    + PD   Y+   +   K+   ++A   L
Sbjct: 187 DAKMYDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVL 246

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM-MSLFAKMNDAEYTCVISSLVK 326
            +M +   +     Y+S++ +   +G  DE LR+  +M ++   KM+    T ++     
Sbjct: 247 GKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCL 306

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            GE  KA +++DE      T       +L+         +       +++ +G+ P    
Sbjct: 307 HGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYE 366

Query: 387 WELLTWGYLKKGQMEKVLECFKKAI----------GSVRKWVPDHRLITAAYN---KLEE 433
           + L+  G L+  Q E  +  F   +          G +  W+  H  +  A N   K++E
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE 426

Query: 434 QG 435
            G
Sbjct: 427 AG 428


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +++ Y    QL+K   + +  L+ +  P   TY L L A  +      AE    E++
Sbjct: 168 YNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQ 227

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  + P    Y+      +K    EKA    + M+K  CR N   Y+ ++++Y       
Sbjct: 228 KNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPM 287

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L+++ +M ++  K N   YT ++++  + G  EKAE +++E +      D    N L+
Sbjct: 288 SSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 347

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK-AIGSVR 415
            AY      + A   ++ +   G +P   ++ +L   Y + G  ++    F++     +R
Sbjct: 348 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMR 407

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             +  H L+ +A+ K    G++   E ++  L  +G    T   N++L  Y +AG++
Sbjct: 408 PTMKSHMLLLSAHAK---SGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRL 461



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 185/445 (41%), Gaps = 13/445 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  ++++  + VCEW+  +   +     Y + +D   + R L+ AE+ +  L + 
Sbjct: 135 VAVQLRLNRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEA 194

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y  + +   AE ++ +M + G       YN  L+  +     +K 
Sbjct: 195 HCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKA 254

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ Q +KK     +  TY L +          ++ K F E+K     P+  +Y+ L + 
Sbjct: 255 VEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNA 314

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    +EM++     +  AY++L+  Y+  G       I+  M  +  + +
Sbjct: 315 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 374

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  ++AE  + E +        +   +LL+A+     +   E    
Sbjct: 375 RASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMA 434

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKK--AIGSVRKWVPDHRLITAAY 428
           +L   G++P       +   Y + G+   ME++L   ++     +     PD        
Sbjct: 435 QLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLV 494

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP--LIIVERMQKDNVQ 485
           N     G +D  E     L   G  +  + + S +  YA+  +    L I E M      
Sbjct: 495 NVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCY 554

Query: 486 MDAETQKVL--KITSEMPVSEVSSI 508
            DA T KVL    + E  V +V++I
Sbjct: 555 PDAGTAKVLLAACSDERQVEQVTAI 579



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 15/262 (5%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   ME     +     Y + +D   +   
Sbjct: 332 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLME-HMGCEPDRASYNILVDAYGRAGL 390

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  F+ L  +   P   S   LL ++ ++   A  E +M ++ + G        N 
Sbjct: 391 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNA 450

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTS--------PDVVTYNLWLAACASQNDKETAEKAF 232
           MLN Y   G+LD + ++L  +++           PD  TYN+ +         +  E AF
Sbjct: 451 MLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAF 510

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             L    +  D +++++    Y + +   +     +EM    C  +      LL+  ++ 
Sbjct: 511 RALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTAKVLLAACSDE 570

Query: 293 GYKDEVLRIWKKMM----SLFA 310
              ++V  I + M     +LFA
Sbjct: 571 RQVEQVTAIVRSMHKDAKTLFA 592


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 189/461 (40%), Gaps = 56/461 (12%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI-RG--LSSAENFFE 131
           N ++        +K AL VC+ M        V  D   H  ++S   RG   S   ++FE
Sbjct: 236 NNLINACGSSGNWKEALNVCKKMTENG----VGPDLVTHNIVLSAYKRGNQYSKVLSYFE 291

Query: 132 NLPDKMRGPDTCSALLHSYV-----QNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLY 185
            +      PDT +  +  Y      QN K+ +   ++ EK SEC      + +  +++LY
Sbjct: 292 LMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSEC--YPDVVTFTTIIHLY 349

Query: 186 ISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              GQ++         L +   P++V+YN  + A AS    + A   F E+KK    PD 
Sbjct: 350 SVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDV 409

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           +SY++L + Y K   PEKA    + M +  C+ N V+Y++L+  Y + G   E + I  +
Sbjct: 410 VSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHE 469

Query: 305 M------------MSLFA-----------------------KMNDAEYTCVISSLVKLGE 329
           M             +L A                       K+N   Y   I S + +GE
Sbjct: 470 MERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           ++KA ++Y    +     DP   N+L++     ++   A  F + ++   I      +  
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +   Y K+GQ+ +    F K    +    PD    TA  +  +   + + A  L + +  
Sbjct: 590 VICAYSKQGQVTEAESMFTKM--KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMET 647

Query: 450 AGHVSTEIY-NSLLRTYAKAGKMP--LIIVERMQKDNVQMD 487
                  I  +SL+R + K G+    L++ E M++  +  +
Sbjct: 648 DDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFN 688



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 149/334 (44%), Gaps = 5/334 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++RE+ ++   +H+++V  WM+ Q +    +  Y + + L ++   +  A   F  +   
Sbjct: 132 LIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKW 191

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  T +AL++++ +  +   A  +M+ M           YN+++N   S+G   + 
Sbjct: 192 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 251

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             + +++ +N   PD+VT+N+ L+A    N        F  +K T I PD  + + +   
Sbjct: 252 LNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYC 311

Query: 254 YIKMELPEKAATTLKEM-EKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+    KA      M EKR+ C  + V +++++ LY+  G  +     +  M++   K
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLK 371

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  +I +    G  ++A ++++E +      D      LL AY    + E A   
Sbjct: 372 PNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKV 431

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  +     KP   ++  L   Y  KG + + +E
Sbjct: 432 FELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVE 465



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 107/278 (38%), Gaps = 58/278 (20%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC----------------- 219
           YN  +  Y+S G+ DK   + + ++ K   PD VTYN+ ++ C                 
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMM 576

Query: 220 ------------------ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
                             + Q     AE  F ++K     PD I+Y+ +   Y   E  E
Sbjct: 577 DLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWE 636

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA+    EME    + + +A SSL+  +   G   +VL + + M       N++ +  ++
Sbjct: 637 KASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMV 696

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL-----------EMAES 370
           S          A ++  EW  I G      P+I + +    NQL            M + 
Sbjct: 697 S----------ACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKL 746

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           FY ++V  G +  + T+ +L    L  G   K +E  +
Sbjct: 747 FY-KIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQ 783



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 50/342 (14%)

Query: 189 GQLDKVPQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           G L+   Q+ + +K  KN       YN+ +   A  N  + A   F E++K +  PD  +
Sbjct: 140 GSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAET 199

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM- 305
           Y+ L + + +      A   + +M +     +R  Y++L++   + G   E L + KKM 
Sbjct: 200 YNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 259

Query: 306 ---------------------------MSLFAKM-------NDAEYTCVISSLVKLGEFE 331
                                      +S F  M       +      VI  LVKLG+  
Sbjct: 260 ENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNG 319

Query: 332 KAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           KA +I++  +       P V     ++  Y    Q+E  ++ +N ++ +G+KP   ++  
Sbjct: 320 KAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNA 379

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           L   Y   G  ++    F +    ++K  + PD    T+  N   + G  + A  +   +
Sbjct: 380 LIGAYASHGMDKEAFSVFNE----IKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 448 RNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
           R   H    +  YN+L+  Y   G +   + I+  M+++ VQ
Sbjct: 436 RR-NHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQ 476


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 18/360 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A LH  +    SA A AL   M       C   +N ML    S G+  +  ++L+++ +
Sbjct: 457 TASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR 516

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEK 262
              P+ VTYN  +A   S+   + A     E++ +  I P+  +Y T+ S + K+   ++
Sbjct: 517 ---PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 573

Query: 263 AATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           A     EM  K   +   V Y++L+  Y + G  D  L    +M+     M  A Y  ++
Sbjct: 574 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 633

Query: 322 SSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +L   G   +A   Y+  E + G G   D    NIL+  +     ++ A   +  +  +
Sbjct: 634 HALFMDGRGTEA---YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR 690

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDI 437
           G++    T+  L +   KKGQ+++  + F +A   VR+ + PD  L  A  N     G+I
Sbjct: 691 GVRATVVTYTALIYALSKKGQVQETDKLFDEA---VRRGIRPDLVLYNALINSHSTSGNI 747

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           D A  ++  +        ++ YN+L+R     G++     +++ M +  +Q D  T   L
Sbjct: 748 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 807



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 1/257 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           +AL+  Y    K   A    ++M E G       YN +++    +G+  +  ++++E+  
Sbjct: 595 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 654

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K  +PDV TYN+ +     + + + A + F  + +  +    ++Y+ L     K    ++
Sbjct: 655 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 714

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                 E  +R  R + V Y++L++ ++  G  D    I  +M       +D  Y  ++ 
Sbjct: 715 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 774

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L  LG  ++A  + DE        D    N L++ Y  +  ++ A    N ++ KG  P
Sbjct: 775 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 834

Query: 383 CYTTWELLTWGYLKKGQ 399
              T+  L  G  K GQ
Sbjct: 835 TLLTYNALIQGLCKNGQ 851



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 1/253 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+   + +  EA  L+E+M   G       YN ++N +   G + K  ++ + +
Sbjct: 628 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 687

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++     VVTY   + A + +   +  +K F E  +  I PD + Y+ L + +      
Sbjct: 688 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 747

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   + EMEK+    + V Y++L+     +G  DE  ++  +M     + +   Y  +
Sbjct: 748 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 807

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS     G+ + A  I +E  +          N L+       Q + AE+    +V  GI
Sbjct: 808 ISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGI 867

Query: 381 KPCYTTWELLTWG 393
            P  +T+  L  G
Sbjct: 868 TPDDSTYISLIEG 880



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+++  +  +  E + L ++    G     + YN ++N + ++G +D+  +++ E+
Sbjct: 698 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 757

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK  +PD VTYN  +         + A K   E+ +  I PD ++Y+TL S Y      
Sbjct: 758 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 817

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++L+      G  D+   + K+M+      +D+ Y  +
Sbjct: 818 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 877

Query: 321 ISSL 324
           I  L
Sbjct: 878 IEGL 881


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 122/275 (44%), Gaps = 9/275 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L+    P   TY L L A  +      AE    E+++  I P    Y+      +K    
Sbjct: 6   LEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCA 65

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA    + M++  CR N   Y+ ++++Y         ++++K+M S+  K N   YT +
Sbjct: 66  EKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTAL 125

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +++  + G  EKAE +++E +      D    N L+ AY      + A   ++ +   G 
Sbjct: 126 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGC 185

Query: 381 KPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +P   ++ +L   Y + G   + E V E  K+    +   +  H L+ AA+ +    G++
Sbjct: 186 EPDRASYNILVDAYGRAGLHREAEAVFESLKRQ--GMAPTMKSHMLLLAAHAR---SGNV 240

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              E ++  L  +G     I  N++L  Y +AG++
Sbjct: 241 ARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRL 275



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 35/269 (13%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  M+N+Y  + Q     ++ +E++      ++ TY   + A A +   E AE+ F E++
Sbjct: 87  YTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQ 146

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +   +PD  +Y+ L   Y +   P+ A+     M+   C  +R +Y+ L+  Y   G   
Sbjct: 147 QAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHR 206

Query: 297 EVLRIW------------KKMMSLFAKM----NDAEYTCVISSLVKLG------EFEKAE 334
           E   ++            K  M L A      N A    V++ L K G            
Sbjct: 207 EAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAML 266

Query: 335 NIY------DEWESI------SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           N Y      D+ E +       GT D    N+ + AY     LE  E+ +  L  +G+  
Sbjct: 267 NAYGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAA 326

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              TW      Y +K +  + LE F++ +
Sbjct: 327 DVVTWTSRMGAYARKKEYRRCLEIFEEMV 355



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 3/247 (1%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           + ++ GH    Y  N ++    +    + A E+   M+     +     Y + +D   + 
Sbjct: 144 EMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQ-HMGCEPDRASYNILVDAYGRA 202

Query: 121 RGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
                AE  FE+L  +   P   S   LL ++ ++   A  E +M ++ + G     +  
Sbjct: 203 GLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIAL 262

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N MLN Y   G+LD + ++L  +++  + DV TYN+ + A       E  E AF  L++ 
Sbjct: 263 NAMLNAYGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLERR 322

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            +  D +++++    Y + +   +     +EM    C  +      L++  ++    ++V
Sbjct: 323 GLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQV 382

Query: 299 LRIWKKM 305
             I + M
Sbjct: 383 TAIVRSM 389



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 118/301 (39%), Gaps = 12/301 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + +++  K +   SA   F+ +       + C+  AL++++ +     +AE + E+M 
Sbjct: 87  YTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQ 146

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----KKNTSPDVVTYNLWLAACASQ 222
           + G       YN ++  Y   G     PQ   E+          PD  +YN+ + A    
Sbjct: 147 QAGHEPDVYAYNALMEAYSRAG----FPQAASEIFSLMQHMGCEPDRASYNILVDAYGRA 202

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                AE  F  LK+  + P   S+  L + + +     +    + ++ K     + +A 
Sbjct: 203 GLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIAL 262

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +++L+ Y   G  D++ R+   M     + +   Y   +++  + G  E+ E  +   E 
Sbjct: 263 NAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGTYNVAVNAYGRAGYLERMEAAFASLER 321

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D       + AY  + +       +  +V  G  P   T ++L      + Q+E+
Sbjct: 322 RGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQ 381

Query: 403 V 403
           V
Sbjct: 382 V 382


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 13/314 (4%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           LL+     K+  EA + L+++M E G +   + YN +L    +  + ++  ++L  +  +
Sbjct: 135 LLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADD 194

Query: 205 ----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                 P+VV+Y+  +    ++   +     FLE+    I PD ++Y+T+     K +L 
Sbjct: 195 QVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLF 254

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    ++M     + N   Y+ L+  Y ++G   EV+R+ ++M +   K N   Y  +
Sbjct: 255 DRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSL 314

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVT 377
           ++ L K G   +A   +D   S+ G G  P V    I+L  Y  +  L       N +V 
Sbjct: 315 LNYLCKNGRCREARFFFD---SMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVA 371

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            GI P +  + +    Y K G ++K ++ F K     +   PD     A  + L + G +
Sbjct: 372 NGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKM--RQQGLSPDAVSYGALIDALCKLGRV 429

Query: 438 DGAEHLLVTLRNAG 451
           D AE     + N G
Sbjct: 430 DDAEVKFNQMINEG 443



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 3/275 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           P+ C+  +LL+   +N +  EA    + M   G       Y  ML+ Y + G L ++  +
Sbjct: 306 PNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDL 365

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L  +  N  SP+   +N++ +A A     + A   F ++++  + PD +SY  L     K
Sbjct: 366 LNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCK 425

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   + A     +M       + V +SSL+     +   ++V  ++ +M+++    N   
Sbjct: 426 LGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVF 485

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  ++ +L K G   + + + D  E +    D    N L+  +     ++ A      +V
Sbjct: 486 FNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV 545

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           + G+KP   ++  L  GY K G+++     F+K +
Sbjct: 546 SVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML 580



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 14/369 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L+ + K      A  FF+++  K   P   T   +LH Y      +E   L+  M 
Sbjct: 311 YGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMV 370

Query: 168 ECGFLKCPLPYNHMLNLYISN----GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQ 222
             G      P +H+ N++ S     G +DK   +  ++++   SPD V+Y   + A    
Sbjct: 371 ANGIS----PNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKL 426

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
              + AE  F ++    + PD + +S+L      ++  EK      EM       N V +
Sbjct: 427 GRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFF 486

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +++L      G   E  R+   +  +  + +   Y  +I      G  ++A  + +   S
Sbjct: 487 NTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS 546

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           +    D    N LL  Y    +++ A S + ++++ GI P   T+  +  G  +  +  +
Sbjct: 547 VGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSE 606

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
             E +   I S  KW  D        N L +   +D A  +   L + G  ++   +N +
Sbjct: 607 AKELYLNMINSGTKW--DIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIM 664

Query: 462 LRTYAKAGK 470
           +    K G+
Sbjct: 665 IGALLKGGR 673



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/418 (21%), Positives = 159/418 (38%), Gaps = 75/418 (17%)

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLN 183
             + +P+    PDT S   LL      K++ EA  L+  M++     CP   + Y+ ++N
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            + + GQ+DK   +  E+  +   PDVVTY   +         + AE  F ++    + P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-------------- 288
           +  +Y+ L   Y+ +   ++    L+EM     + N   Y SLL+               
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 289 ---------------------YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
                                Y   G   E+  +   M++     N   +    S+  K 
Sbjct: 332 DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKC 391

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G  +KA +I+++      + D      L+ A     +++ AE  +N+++ +G+ P    +
Sbjct: 392 GIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVF 451

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIG------------------SVRKWVPDHRLITA--- 426
             L +G     + EKV E F + +                      + +   RL+ +   
Sbjct: 452 SSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIEC 511

Query: 427 --------AYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                   +YN L +     G ID A  LL  + + G       YN+LL  Y KAG++
Sbjct: 512 MGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRI 569



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 167/393 (42%), Gaps = 12/393 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           + +     +K   +  A + F  +  +   PD  S  AL+ +  +  +  +AE    +M 
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
             G     + ++ ++    +  + +KV ++  E L     P++V +N  L     +    
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 500

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             ++    ++   + PD ISY+TL   +      ++A+  L+ M     + +  +Y++LL
Sbjct: 501 EGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLL 560

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G  D     ++KM+S         Y  ++  L +   F +A+ +Y    +    
Sbjct: 561 HGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 620

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI+L      N ++ A   +  L +KG++    T+ ++    LK G+ E  ++ 
Sbjct: 621 WDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDL 680

Query: 407 FKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLR 463
           F    A G V+  V  +RL+      L E+G ++  + L   + +N    ++++ N+L+R
Sbjct: 681 FAAIPANGLVQNVVT-YRLVV---ENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR 736

Query: 464 TYAKAGKMPL--IIVERMQKDNVQMDAETQKVL 494
                G +      + ++ + N  ++A T  +L
Sbjct: 737 RLLHRGDISRAGAYLSKLDERNFSVEASTTSML 769



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 96/469 (20%), Positives = 194/469 (41%), Gaps = 39/469 (8%)

Query: 54   SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDY 110
            SA    RK    G T      N I+  L + KR+  A E+   M     ++DI      Y
Sbjct: 571  SAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIY----TY 626

Query: 111  AVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSE 168
             + L+ + K   +  A   F+NL  K    +  T + ++ + ++  +  +A  L   +  
Sbjct: 627  NIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 686

Query: 169  CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKET 227
             G ++  + Y  ++   I  G L++   +   ++KN T+P+    N  +     + D   
Sbjct: 687  NGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR 746

Query: 228  AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
            A     +L +     +  + S L S++   E    A    K + K+    N    S+L+ 
Sbjct: 747  AGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHA----KSLPKKYRILNEANSSALIK 802

Query: 288  LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                +   D+   ++++M+      +   Y  ++  L + G F +A+ +Y    +     
Sbjct: 803  KARRI---DDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM 859

Query: 348  DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
            +    NI+L      N ++ A   +  L +KG++    T+ ++    LK G+ E  ++ F
Sbjct: 860  NIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 919

Query: 408  KKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLR 463
              A       VPD   +RL+      L E+G ++  + L +T+  +G  + + + N+L+R
Sbjct: 920  --AAIPANGLVPDVVTYRLVA---ENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVR 974

Query: 464  TYAKAGKMPL--IIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
               + G +      + ++ + N  ++A T            SE+ S+FS
Sbjct: 975  RLLQRGDISRAGAYLSKLDEKNFSLEAST-----------TSELISLFS 1012


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 40/389 (10%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGF-------------------------- 171
           PD  T + ++H   +  K  +A  L+++M   GF                          
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 172 -LKCPLPYNHMLNL----YISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQND 224
            +K P P N +LN     Y+ +GQL +    L E   N    PD+ TYN+ +     +  
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A     E+ +   +P+ I+Y+ L +   K  L E+A   L EM  R    N V Y+ 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+            L +  +M +   K +   Y  +I  L K+   ++A  ++       
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              +    N L+ A + R   + A +  N ++ +G      T+  L   + K G +EK L
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLR 463
           E +++ I  +     D        N L + G +D A   L    N G V   + YNS+L 
Sbjct: 586 ELYEQMI--MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643

Query: 464 TYAKAGKM--PLIIVERMQKDNVQMDAET 490
              K G++   L + +R+Q + V+ DA T
Sbjct: 644 GLCKVGRIKEALNLFDRLQVEGVRPDAFT 672



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 5/329 (1%)

Query: 144 SALLHSYVQNKKSAEAEALM-EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
           + L++ YV + +  EA++ + E M   GF      YN +++     G L     ++ E+ 
Sbjct: 358 NTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMS 417

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++   P+V+TY + +         E A     E+    +  + + Y+ L     + E   
Sbjct: 418 RRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVH 477

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   L EM  + C+ +   Y+SL+     +   DE  R++  M+   A  N+  Y  +I
Sbjct: 478 VALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLI 537

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            +L++ G F+KA  + ++      T D    N L+ A+     +E     Y +++  G+ 
Sbjct: 538 HALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLG 597

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
               +  ++  G  K G+++   E  + AI   R +VPD     +  N L + G I  A 
Sbjct: 598 ADTISCNIMINGLCKVGKVDNAFEFLRDAIN--RGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           +L   L+  G       YN+ +    K G
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEG 684



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 36/281 (12%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL 216
           EA  ++ +MS  G     + YN ++       ++     +L E+  K   PD+ TYN  +
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                 +  + A + F  +       + ++Y+TL    ++    +KA T + +M  R C 
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCT 562

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-------------------------SLFAK 311
            +++ Y+ L+  +  +G  ++ L ++++M+                         + F  
Sbjct: 563 LDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEF 622

Query: 312 MNDA----------EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           + DA           Y  V++ L K+G  ++A N++D  +      D    N  ++    
Sbjct: 623 LRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK 682

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              +  A SF+ R +  G  P   TW +L +  LK+   E 
Sbjct: 683 EGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 115/273 (42%), Gaps = 8/273 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K  SP V T+ + + A    N+ ++A     ++ K    P+ I Y TL     +    
Sbjct: 210 LSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L+EM    C  +   ++ ++     +    +  ++  +M+      ++  Y  +
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR-LVTKG 379
           +  L ++G+  +A  I  +    +      + N L+  Y+   QL+ A+SF N  ++  G
Sbjct: 330 LHGLCRIGKLNEARKILIKIPCPNNA----ILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            +P   T+ +L  G  K+G +    +   +   S R   P+        N L + G ++ 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEM--SRRGCEPNVITYAILVNGLCKAGLLEE 443

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           A  +L  +   G  +++ IYN L+    +  K+
Sbjct: 444 AGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 141/293 (48%), Gaps = 7/293 (2%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
           K  +A+A++++M E       + +N +++ +  +  L    ++ +E++ +   P VVTYN
Sbjct: 283 KMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYN 342

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +    ++     A+    E+  + + P+ I+Y+ L + Y K +L E+A      + K+
Sbjct: 343 SLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQ 402

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               N + +++LL  Y   G  +E   + K M+      N + Y C+I    + G+ E+ 
Sbjct: 403 GLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEV 462

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           +N+ +E +      D    NIL++A+  + + + A    + ++ KG+KP + T+ +L  G
Sbjct: 463 KNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNG 522

Query: 394 YLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYNKLEEQGDIDGAEHLL 444
           Y  +G +   L   +K +    +W  V  + ++   Y +   +G ++ A  LL
Sbjct: 523 YCMEGNLRAALN-LRKQMEKEGRWANVVTYNVLIQGYCR---KGKLEDANGLL 571



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 1/261 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+  + +++  + A  + E+M   G     + YN ++N   + G+L++   +L E 
Sbjct: 305 TFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEM 364

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L  N  P+V+TYN  +     +   E A + F  + K  + P+ I+++TL   Y K    
Sbjct: 365 LSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKM 424

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    K M ++    N   Y+ L+  +   G  +EV  +  +M     K +   Y  +
Sbjct: 425 EEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNIL 484

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  +  E +KA  + DE             NILL  Y     L  A +   ++  +G 
Sbjct: 485 ISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGR 544

Query: 381 KPCYTTWELLTWGYLKKGQME 401
                T+ +L  GY +KG++E
Sbjct: 545 WANVVTYNVLIQGYCRKGKLE 565



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
           V++ N  L+A   +N+    E  + E+ + KI P+ I+++T+ +   K+    KA   + 
Sbjct: 195 VLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVD 254

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR---IWKKMMSLFAKMNDAEYTCVISSLV 325
           +M+      N V Y++L+  Y  MG   ++ +   I K+M+      N   +  +I    
Sbjct: 255 DMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC 314

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K      A  +++E +S          N L+    N  +L  A+   + +++  +KP   
Sbjct: 315 KDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVI 374

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T+  L  GY KK  +E+  E F   IG  +   P+        +   + G ++ A  L  
Sbjct: 375 TYNALINGYCKKKLLEEARELFDN-IGK-QGLTPNVITFNTLLHGYCKFGKMEEAFLLQK 432

Query: 446 TLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            +   G + +   YN L+  + + GKM  +  ++  MQ   V+ D  T  +L
Sbjct: 433 VMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNIL 484



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 38/198 (19%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F+N+  +   P+  T + LLH Y +  K  EA  L + M E GFL     YN 
Sbjct: 389 LEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNC 448

Query: 181 MLNLYISNGQLDKVPQMLQE------------------------------------LKKN 204
           ++  +   G++++V  +L E                                    L K 
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             P  +TYN+ L     + +   A     +++K     + ++Y+ L   Y +    E A 
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDAN 568

Query: 265 TTLKEMEKRTCRKNRVAY 282
             L EM ++    NR  Y
Sbjct: 569 GLLNEMLEKGLIPNRTTY 586


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 207/475 (43%), Gaps = 22/475 (4%)

Query: 5   SLGATLAAARVFSTK-AAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWK 63
           SLG+     +  ST+  +K++ LG  +   G   +  L   +  ++ +   + +     +
Sbjct: 18  SLGSDFCGRK--STRLVSKLSHLGRPSSAPGKPIKPVLSSAVKHMIKSPSPSLMPALLDQ 75

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
              H +   +L  IVREL    +++  ++  +WM LQ +++  S    V   +IS +  L
Sbjct: 76  VSAHLLGPDDLPFIVRELGHSGQWEKVVKSFDWMVLQQNLR--SQWDKVTSTIISSLGRL 133

Query: 124 SS---AENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--- 175
                A+  F+       G +    S+L+ +Y ++ K A+A  + E M     + C    
Sbjct: 134 GRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK----VVCKPNL 189

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +++     G      ++ +E L++  SPD +T+N  ++A    N  E  ++ F E
Sbjct: 190 VVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE 249

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMG 293
           +++  I  D ++Y+TL + Y +       A  ++ M K +    + + YS+++  Y  +G
Sbjct: 250 MEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLG 309

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E + ++++M +   + +   Y  ++    +LG F++A +I    E      D    N
Sbjct: 310 LAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYN 369

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            LL +Y  + +   A S    +  +G  P   T+  L   Y K G     +  F+    +
Sbjct: 370 ALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKA 429

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
             +  PD  L +   +   + G  D A  LL  + + G     I YNSLL  Y +
Sbjct: 430 GLQ--PDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGR 482



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 44/240 (18%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL SY +  K  EA +L+E+M + G     L Y+ +++ Y  +G       + Q++
Sbjct: 367 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 426

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY------ 254
           KK    PDVV Y+  +  C      + A     E+    I P+ I+Y++L   Y      
Sbjct: 427 KKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLM 486

Query: 255 IKMELPE-----------------------------------KAATTLKEMEKRTCRKNR 279
           ++   P+                                    AA   +EM K   + N 
Sbjct: 487 VRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNV 546

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V +SS+L+  ++    ++   + + M     ++    +  ++   +++  +  AE +++E
Sbjct: 547 VTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGVTHGLLMGFRIRV--WRDAETLFNE 604


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 171/385 (44%), Gaps = 21/385 (5%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G  +A   F  L +K   P   TC+ LL S V+  +  ++  + E M + G       ++
Sbjct: 192 GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFS 250

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
             +N +   G+++   Q+  +++K   SP+VVTYN  +       + + A +   ++ K 
Sbjct: 251 TAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD 310

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            ++   I+YS L +  +K+E   +A + LKE  ++    N V Y++L+  Y  MG   + 
Sbjct: 311 GVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDA 370

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           LRI   M+S     N      +I    K+G+ E+AE I +E  S   + +P     ++  
Sbjct: 371 LRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHW 430

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE----CFKKAIGSV 414
               ++ E A  F   ++ + ++P       L  G  K+G+    +E      +K  G+ 
Sbjct: 431 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA- 489

Query: 415 RKWVPDHRLIT--AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                   L+T  A  + L + G++  A  LL  +   G V  +I YN+L+    K GK+
Sbjct: 490 -------NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 542

Query: 472 --PLIIVERMQKDNVQMDAETQKVL 494
                +   M K  ++ D  T  +L
Sbjct: 543 EEGFKLRGEMVKQGIEPDTFTYNLL 567



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 36/297 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H   +     EA  L++KM E GF+   + YN +++     G++++  ++  E+
Sbjct: 493 TTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM 552

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+   PD  TYNL +         + A   + E K   + P+  +Y  +   Y K +  
Sbjct: 553 VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKI 612

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
           E+      E+  +    N V Y++L+  Y   G   E  ++   M               
Sbjct: 613 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 672

Query: 306 ---MSLFAKMNDAE-----------------YTCVISSLVKLGEFEKAENIYDEWESISG 345
              M    +M DA+                 YT +I    KLG+ +K  N+  E  S   
Sbjct: 673 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 732

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             +     +++  Y     ++ A    + +V KGI P   T+ +LT G+ K+G++E+
Sbjct: 733 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 789



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 161/413 (38%), Gaps = 46/413 (11%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           +G   +   LN I++   K+ + + A  + E M L     +  G +   +  +       
Sbjct: 380 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEM-LSRGFSINPGAFTTIIHWLCMNSRFE 438

Query: 125 SAENFF-ENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           SA  F  E L   MR  D   + L+    +  K ++A  L  ++ E GF    +  N ++
Sbjct: 439 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 498

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           +     G + +  ++L++ L++    D +TYN  ++ C  +   E   K   E+ K  I+
Sbjct: 499 HGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIE 558

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD  +Y+ L                        CR               +G  DE + +
Sbjct: 559 PDTFTYNLLI--------------------HGMCR---------------IGKLDEAVNL 583

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W +  S     N   Y  +I    K  + E+ E ++ E  + +   +  V N L+ AY  
Sbjct: 584 WNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR 643

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVP 419
                 A   ++ + +KGI P   T+  L  G    G+ME      K  I  +RK   +P
Sbjct: 644 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA----KCLIDEMRKEGLLP 699

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +    TA      + G +D   ++L  + +   H +   Y  ++  Y+K+G M
Sbjct: 700 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 188/412 (45%), Gaps = 9/412 (2%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISKIR 121
           K +G  + +Y  N ++   R+   YK A +V + M    ++   V+  +   LD+  K R
Sbjct: 241 KNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVT--FNSLLDVYGKAR 298

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
               A    + +      P   T ++L+ SYV++    EA  L E+M   G     + Y 
Sbjct: 299 MHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYT 358

Query: 180 HMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +++     G++D       E+ +N   P++ TYN  +     +         F +L+  
Sbjct: 359 TLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSA 418

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD ++++TL +++ +  L  + +   KEM+K      R  Y SL+S Y+  G  D+ 
Sbjct: 419 GFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQS 478

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           + I+K+M+      + + Y  V+S+L + G +E+AE ++ E E++    D    + LL A
Sbjct: 479 MEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHA 538

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418
           Y N  +L+  ++    +  + I+  +   + L     K   + +  + F + +G  R+  
Sbjct: 539 YANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLE-LGR-RRCS 596

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            D  ++ A  +   +   +   E +L  ++ +  ++ST  YNSL+  Y++ G
Sbjct: 597 LDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLG 648



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 151/337 (44%), Gaps = 9/337 (2%)

Query: 140 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVP 195
           PD    +AL+ ++ +  +  +A A+  +M   G     + YN +L++Y  I+    D V 
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV- 234

Query: 196 QMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            ++  +K +  P D  TYN  ++ C      + A K F E++    +PD +++++L  +Y
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K  + ++A   LKEME   C  + V Y+SL+S Y   G   E   + ++M     + + 
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS L + G+ + A   YDE        +    N L+  +  R +     + ++ 
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDD 414

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           L + G  P   TW  L   + + G   +V   FK+   S   +VP+     +  +     
Sbjct: 415 LRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKS--GYVPERDTYVSLISSYSRC 472

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           G  D +  +   +  AG +     YN++L   A+ G+
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGR 509



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 144/356 (40%), Gaps = 40/356 (11%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           F++L      PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y  
Sbjct: 412 FDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSR 471

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G  D+  ++ + + +    PD+ TYN  L+A A     E AEK F E++     PD +S
Sbjct: 472 CGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELS 531

Query: 247 YSTLTSLYI------------------KME----------LPEKAATTLKEMEK------ 272
           YS+L   Y                   K+E          L       L E EK      
Sbjct: 532 YSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELG 591

Query: 273 -RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
            R C  +    ++++S+Y       +V  I   M      ++ A Y  ++    +LG+ E
Sbjct: 592 RRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCE 651

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           K ENI  E +S     D    N ++ AY  + Q++ A   ++ + + G+ P   T+ +  
Sbjct: 652 KCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFV 711

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             Y+     E+ ++  +  +   R   P+ R   +   +    G I  A+  L  L
Sbjct: 712 KSYVANSMFEEAIDLVRYMV--TRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 765



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 113/281 (40%), Gaps = 20/281 (7%)

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
           +PD  +Y+ L S + +      A    + M     +   V Y+ +L +Y+ +        
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVP----- 229

Query: 301 IWKKMMSLFAKM-NDA------EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
            WK +++L   M ND        Y  +IS   +   +++A  ++DE  +     D    N
Sbjct: 230 -WKDVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFN 288

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            LL  Y      + A      +   G  P   T+  L   Y+K G +++  E  ++    
Sbjct: 289 SLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEM--E 346

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
           V+   PD    T   + L+  G ID A       LRN    +   YN+L++ +   GK P
Sbjct: 347 VKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFP 406

Query: 473 --LIIVERMQKDNVQMDAET-QKVLKITSEMPV-SEVSSIF 509
             + + + ++      D  T   +L +  +  + SEVS +F
Sbjct: 407 EMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVF 447


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 18/343 (5%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENF- 129
           Y  N +V  L K  + K A E   +ME L +   +VS +  +H        G SS  N  
Sbjct: 250 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH--------GYSSRGNIE 301

Query: 130 -FENLPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
               + D MR     PD  T  +L+    +  +  EA  L +KM E G +   + YN ++
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           + Y + G L++      E+ KK   P V TYNL + A   +     A+    E++K  I 
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 421

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD I+Y+ L + Y +    +KA     EM  +      V Y+SL+ + +      E   +
Sbjct: 422 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 481

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           ++K++      +   +  ++      G  E+A  +  E +  S   D    N L+     
Sbjct: 482 FEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 541

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             ++E A    + +  +GIKP + ++  L  GY ++G ++   
Sbjct: 542 EGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 584



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 166/358 (46%), Gaps = 20/358 (5%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +TC+ +L  +++  +   A  L  +M           +N M+N+    G+L K  + +  
Sbjct: 215 ETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGF 274

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++     P+VV+YN  +   +S+ + E A +    ++   I+PD  +Y +L S   K   
Sbjct: 275 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 334

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-------YKDEVLRIWKKMMSLFAKM 312
            E+A+    +M +     N V Y++L+  Y N G       Y+DE+++  K +M      
Sbjct: 335 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK--KGIMP----- 387

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           + + Y  ++ +L   G   +A+++  E        D    NIL+  Y      + A   +
Sbjct: 388 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 447

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
           N +++KGI+P + T+  L +   ++ +M++  + F+K +   +   PD  +  A  +   
Sbjct: 448 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD--QGVSPDVIMFNAMVDGHC 505

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
             G+++ A  LL  +        E+ +N+L++   + GK+    ++++ M++  ++ D
Sbjct: 506 ANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 563



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 4/265 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+H+     +  EA+ ++++M + G +   + YN ++N Y   G   K   +  E 
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 450

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P  VTY   +   + +N  + A+  F ++    + PD I ++ +   +      
Sbjct: 451 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNV 510

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   LKEM++++   + V +++L+      G  +E   +  +M     K +   Y  +
Sbjct: 511 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 570

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   + G+ + A  + DE  SI         N L+       + ++AE     +V KGI
Sbjct: 571 ISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 630

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P  +T+  L  G    G ++ ++E
Sbjct: 631 SPDDSTYLSLIEGM---GNVDTLVE 652



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 119/275 (43%), Gaps = 11/275 (4%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K   P + T N  L+     N  E A   + E+ + +I     +++ + ++  K    +
Sbjct: 207 EKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLK 266

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   +  ME    + N V+Y++++  Y++ G  +   RI   M     + +   Y  +I
Sbjct: 267 KAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLI 326

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S + K G  E+A  ++D+   I    +    N L+  Y N+  LE A S+ + +V KGI 
Sbjct: 327 SGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIM 386

Query: 382 PCYTTWELLTWGYLKKGQM----EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           P  +T+ LL      +G+M    + + E  KK I      +PD        N     G+ 
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI------IPDAITYNILINGYSRCGNA 440

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             A  L   + + G   T + Y SL+   ++  +M
Sbjct: 441 KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 11/265 (4%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           + ++L +  C      + A K F  +K+  I P   + + + SL++K+   E A     E
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 239

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +         ++ ++++    G   +       M  L  K N   Y  +I      G 
Sbjct: 240 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 299

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E A  I D         D      L++      +LE A   ++++V  G+ P   T+  
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 390 LTWGYLKKGQMEKVL----ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           L  GY  KG +E+      E  KK I      V  + L+  A   L  +G +  A+ ++ 
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGI---MPSVSTYNLLVHA---LFMEGRMGEADDMIK 413

Query: 446 TLRNAGHVSTEI-YNSLLRTYAKAG 469
            +R  G +   I YN L+  Y++ G
Sbjct: 414 EMRKKGIIPDAITYNILINGYSRCG 438


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 165/359 (45%), Gaps = 10/359 (2%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLI 117
           K  +EG   +      ++  L K+     A+ +   ME    Q D+ +    Y   +D +
Sbjct: 151 KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVI----YTSIIDSL 206

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K R ++ A N F  +  +   PD  T ++L+H+     +      L+ +M     L   
Sbjct: 207 CKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDV 266

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + ++ +++     G++ +  +++  + ++   PDVVTY   +     Q++ + A K F  
Sbjct: 267 VIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDM 326

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           + +    PD ISY+TL + Y K+   +KA    +EM ++    +   Y++L+    ++G 
Sbjct: 327 MVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGR 386

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             + + ++ +M++     +   Y+ ++ SL K    E+A  +    E+ +   D +V NI
Sbjct: 387 LQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNI 446

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           ++       +LE A   ++ L +KG+ P   T+ ++  G  K+G + +  + F +  G+
Sbjct: 447 IIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGN 505



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 146/367 (39%), Gaps = 39/367 (10%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P T + L+       K  EA  L +KM + GF    + Y  ++N     G      ++L+
Sbjct: 126 PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 185

Query: 200 ELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-------- 250
            +++ N  PDVV Y   + +         A   F ++    I PD  +Y++L        
Sbjct: 186 SMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLC 245

Query: 251 -----TSLYIKME----LPE------------------KAATTLKEMEKRTCRKNRVAYS 283
                T+L  +M     LP+                  +A   +  M +R    + V Y+
Sbjct: 246 EWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 305

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+  +      DE ++++  M+      +   YT +I+   K+ + +KA  +++E    
Sbjct: 306 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 365

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D +  N L+    +  +L+ A + ++ +V +G  P   T+ +L     K   +E+ 
Sbjct: 366 EWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEA 425

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
           +   K    S     PD ++     + +   G+++ A  L   L + G H S   YN ++
Sbjct: 426 MALLKAIEAS--NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 483

Query: 463 RTYAKAG 469
               K G
Sbjct: 484 HGLCKRG 490



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 114/273 (41%), Gaps = 5/273 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           LK    PD  T+   +     +     A   F ++      P+ ++Y TL +   K+   
Sbjct: 118 LKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNT 177

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L+ ME+  C+ + V Y+S++          E   ++ +M+      +   YT +
Sbjct: 178 SAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSL 237

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           + +L  L E++    + ++  +     D  + + ++ A     ++  A    + ++ +G+
Sbjct: 238 VHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGV 297

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDG 439
           +P   T+  L  G+  + +M++ ++ F      VRK + PD    T   N   +   ID 
Sbjct: 298 EPDVVTYTTLMDGHCLQSEMDEAVKVFDMM---VRKGFAPDVISYTTLINGYCKIHKIDK 354

Query: 440 AEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           A +L   + R      T+ YN+L+      G++
Sbjct: 355 AMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 10/333 (3%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHLDLISKIR 121
           +G +   +    +V  L  L  +KH   +   M   ++  D+ +    ++  +D + K  
Sbjct: 225 QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI----FSTVVDALCKEG 280

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
            ++ A    + +  +   PD  T + L+  +    +  EA  + + M   GF    + Y 
Sbjct: 281 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 340

Query: 180 HMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            ++N Y    ++DK   + +E+ +K   PD  TYN  +         + A   F E+   
Sbjct: 341 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR 400

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD ++YS L     K    E+A   LK +E      +   Y+ ++      G  +  
Sbjct: 401 GQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAA 460

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
             ++  + S     +   Y  +I  L K G   +A  ++ E +    + D    N +   
Sbjct: 461 RDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARG 520

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           ++  N+   A      ++ +G     +T  LL 
Sbjct: 521 FLQNNETLRAIQLLEEMLARGFSADVSTTTLLV 553



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/244 (17%), Positives = 98/244 (40%), Gaps = 2/244 (0%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L  +  P +V +   L + A      T      ++    + P+  + + L + +  +   
Sbjct: 48  LHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRV 107

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A + L ++ K   + +   +++L+      G   E L ++ KM+    + N   Y  +
Sbjct: 108 GFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTL 167

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+ L K+G    A  +    E  +   D  +   ++ +     Q+  A + ++++V +GI
Sbjct: 168 INGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGI 227

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L        + + V     + + S  K +PD  + +   + L ++G +  A
Sbjct: 228 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNS--KILPDVVIFSTVVDALCKEGKVTEA 285

Query: 441 EHLL 444
             ++
Sbjct: 286 HEIV 289



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 3/173 (1%)

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D+ L  + +++ +    +  ++  +++S+ K+  +    ++  + +S     +    NIL
Sbjct: 38  DDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNIL 97

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           + ++ + N++  A S   +++  G +P  TT+  L  G   +G++ + L  F K I    
Sbjct: 98  INSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID--E 155

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
            + P+        N L + G+   A  LL ++          IY S++ +  K
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 208


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 148/338 (43%), Gaps = 5/338 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K + ++ A  F   + ++   P+  T S++LH +    +S EA +L ++M 
Sbjct: 120 YSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV 179

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E   +   + +N +++     G + +   + + + +K   P+V TYN  +    SQ+  +
Sbjct: 180 ERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMD 239

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K F  + +    P   SY+ L   + K    ++A   L EM  +    + V YS+L+
Sbjct: 240 EAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLM 299

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             +   G   +  ++ ++M S     +   Y+ V+  L K G  ++A  +    +     
Sbjct: 300 KGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIE 359

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +  +  IL+    N  +LE A   ++ L  KGI+P   T+ ++  G LK G   +  E 
Sbjct: 360 PNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACEL 419

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           F+    +V   +P+              GD   A  L+
Sbjct: 420 FRDM--AVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLI 455



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 13/276 (4%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K    P+ VT++  L   +S+     A K F E+ K   +PD I+YST+ +   KM   
Sbjct: 39  FKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGST 98

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   LK+ME++ C+ N V YS+++          E +    +M++     N   Y+ +
Sbjct: 99  TMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSI 158

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +     LG   +A +++ +    +   D    NIL+        +  A+  +  ++ KG+
Sbjct: 159 LHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGV 218

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECF-----KKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           +P   T+  L  GY  + QM++  + F     K    SVR +     ++   + K    G
Sbjct: 219 EPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSY----NILIKGHCK---SG 271

Query: 436 DIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGK 470
            ID A+ LL  + + A    T  Y++L++ + + G+
Sbjct: 272 RIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 124/285 (43%), Gaps = 3/285 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D +SK   +  A+  FE + +K   P+  T +AL+  Y    +  EA+ L   M 
Sbjct: 190 FNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMV 249

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G       YN ++  +  +G++D+   +L E+  K  +PD VTY+  +         +
Sbjct: 250 RKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ 309

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K   E++   + PD ++YS +     K    ++A   LK M++     N   Y+ L+
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
               N G  +    ++  +     + +   YT +IS L+K G   +A  ++ +       
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL 429

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            +    N+++  ++       A      +V +G     +T+++L+
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLS 474



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 143/344 (41%), Gaps = 11/344 (3%)

Query: 113 HLDLISKIRGLSS------AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALME 164
           H+   + + GLSS      A   F+ +      PD  T S +++   +   +  A  L++
Sbjct: 47  HVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLK 106

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQN 223
           KM E G     + Y+ +++    +  + +  + L E+  +  SP+VVTY+  L    +  
Sbjct: 107 KMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLG 166

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
               A   F ++ +  + PD ++++ L     K  +  +A    + M ++    N   Y+
Sbjct: 167 RSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+  Y +    DE  +++  M+      +   Y  +I    K G  ++A+ +  E    
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK 286

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           + T D    + L+  +    + + A+     + + G+ P   T+ ++  G  K+G +++ 
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA 346

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
            E  K    S  K  P+  + T     +   G ++ A  L   L
Sbjct: 347 FELLKAMQES--KIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  G  +KV ++  E+  + +  PD VTY+  +AA       ++A   F E+
Sbjct: 197 YNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+T+  +Y K+   EKA   ++EM+++ C      Y+ L+      G  
Sbjct: 257 KENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKV 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           +E   I+  M+    K +      +I+ L K G    A  +++E ES+  T +    N +
Sbjct: 317 EEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTV 376

Query: 356 LAAYINRNQLEMAESF--YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           + A    ++   +E+F  Y ++   G+ P   T+ +L  G+ K  ++EK L   ++    
Sbjct: 377 IKALF-ESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEM--D 433

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
            + + P      +  N L +    + A  L   LR N G+ S  +Y  +++   K G++
Sbjct: 434 EKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 5/273 (1%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +N ++  L K  R   A+++ E ME LQ    +V+ +  +     SK R  S A  ++E 
Sbjct: 338 INNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARA-SEAFLWYEK 396

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           + +    P   T S L+  + +  +  +A  L+E+M E GF  CP  Y  ++N      +
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +   ++ QEL++N        Y + +           A   F E+KK   +PD  +Y+ 
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L S  +++ + ++A + L+ ME+  C  +  +++ +L+ +   G     + ++ +M +  
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
            K +   Y  V+  L + G FE+A  +  E  S
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNS 609



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 4/229 (1%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K KE G     +  + ++    K  R + AL + E M+ +         Y   ++ + K 
Sbjct: 396 KMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMD-EKGFAPCPAAYCSLINALGKA 454

Query: 121 RGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           +   +A   F+ L +          + ++    +  + +EA  L  +M + G       Y
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +++  +  G  D+   +L+ +++N  +PD+ ++N+ L   A     + A + F  +K 
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN 574

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +KI PD +SY+T+     +  + E+AA  +KEM  +    + + YSS+L
Sbjct: 575 SKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 41/270 (15%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFL---E 234
           N+++NL    G+L    ++ +E++    +P+VVTYN  + A      K  A +AFL   +
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFES--KARASEAFLWYEK 396

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------- 287
           +K+  + P   +YS L   + K    EKA   L+EM+++       AY SL++       
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 288 ----------LYTNMGYKD------------------EVLRIWKKMMSLFAKMNDAEYTC 319
                     L  N GY                    E + ++ +M  L    +   Y  
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++S +V++G  ++A ++    E    T D    NI+L  +      + A   + R+    
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           IKP   ++  +     + G  E+  +  K+
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKE 606


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 193/430 (44%), Gaps = 27/430 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ---YDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           + +R+   + + K+Y   L++C+ MEL+   +++  +S    + ++   + R LS A + 
Sbjct: 74  DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS----IMINCCCRCRKLSLAFSA 129

Query: 130 FENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
              +      PDT   S L++      + +EA  L+++M E G     +  N ++N    
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 188 NGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           NG++ D V  + + ++    P+ VTY   L           A +   ++++ KI  D + 
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS +     K    + A     EME +  + + + Y++L+  +   G  D+  ++ + M+
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 +   ++ +I   VK G+  +AE ++ E      + D      L+  +   NQL+
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A    + +V+KG  P   T+ +L  GY K   ++  LE F+K   S+R  V D    T 
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM--SLRGVVAD----TV 423

Query: 427 AYNKLE----EQGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVE 477
            YN L     E G ++ A+ L   +V+ R    + +  Y  LL      G  +  L I E
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS--YKILLDGLCDNGEPEKALEIFE 481

Query: 478 RMQKDNVQMD 487
           +++K  +++D
Sbjct: 482 KIEKSKMELD 491



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 162/359 (45%), Gaps = 4/359 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
            A + + +  E G   ++     +++ + K  +   A+E+   ME +  IKL +  Y++ 
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME-ERKIKLDAVKYSII 253

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   L +A N F  +  K    D    + L+  +    +  +   L+  M +   
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + ++ +++ ++  G+L +  ++ +E+ ++  SPD VTY   +     +N  + A  
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +      P+  +++ L + Y K  L +      ++M  R    + V Y++L+  + 
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +G  +    ++++M+S   + +   Y  ++  L   GE EKA  I+++ E      D  
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG 493

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           + NI++    N ++++ A   +  L  KG+KP   T+ ++  G  KKG + +    F+K
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL++    N K ++A  L+++M E GF    + Y  +L +   +GQ     ++L+++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D V Y++ +         + A   F E++      D I Y+TL   +      
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +  A  L++M KR    + VA+S+L+  +   G   E   + K+M+      +   YT +
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K  + +KA ++ D   S     + R  NIL+  Y   N ++     + ++  +G+
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
                T+  L  G+ + G++E   E F++ +   R+  PD        + L + G+ + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVS--RRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 441 EHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
             +   + ++   +   IYN ++     A K+
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 28/243 (11%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALL 147
           ALE+ E +E +  ++L  G Y + +  +     +  A + F +LP K   PD  T + ++
Sbjct: 476 ALEIFEKIE-KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK---- 203
               +    +EA+ L  KM E G       YN ++  ++  G   K  ++++E+K+    
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFS 594

Query: 204 -------------------NTSPDVVTYNLWLAA-CASQNDKE-TAEKAFLELKKTKIDP 242
                                 PDV T+   L   C  +N     A   F  +K     P
Sbjct: 595 VDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKP 654

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           + ++Y+T+    +   +  +    L +M +R C+ N V  S+ +S           + + 
Sbjct: 655 NVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLL 714

Query: 303 KKM 305
           +KM
Sbjct: 715 RKM 717


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 171/408 (41%), Gaps = 10/408 (2%)

Query: 40  TLGRRLLSLVYAKR--SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC-EW 96
           T G  L SL  A+R   A    R    +G + + +  + ++  L + ++   A E+  E 
Sbjct: 54  TYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM 113

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNK 154
           ++  +   +V+  Y   L  + K+  L  A + F  +  +   PD    + L+  + +  
Sbjct: 114 IDGGHQPNVVT--YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
              EA  L E+M E G +     YN +L+ +   G+  +V  + ++ L++   P++ T+N
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L       D   A + FLE++     PD +SY+TL         P +A   L+EM + 
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRS 291

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + V+Y+ L+  Y+  G  D  ++++ ++     + +   Y+ +I  L + G+   A
Sbjct: 292 GVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAA 351

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             ++ +  +     D  V   L+       +L  +   +  +V     P    + LL + 
Sbjct: 352 FVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYK 411

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
             K  + + V E F +   + R + PD  +       L    D D AE
Sbjct: 412 LCKAKRSDDVCEIFHEL--TERGFSPDVEISKVILETLRRSDDKDAAE 457



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 126/301 (41%), Gaps = 10/301 (3%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L YN++L +   +G+ D V     + L     P+  TY   L +       E A   F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +      P+  SYS L +   + +  ++AA  L EM     + N V Y SLLS    MG 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             E + ++ +M+      +   Y  +I    K G+  +A  +++E             N 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--KKAIG 412
           LL+ +  + +    +S +  ++ +G  P   T+  L  G+ K G M +    F   +++G
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGK 470
                V  + LI    +K    G    A+ LL  +  +G V  +I  YN L+  Y+K+G 
Sbjct: 258 CPPDVVSYNTLIRGMCSK----GKPHEAQRLLREMIRSG-VGPDIVSYNILIDGYSKSGA 312

Query: 471 M 471
           +
Sbjct: 313 L 313


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 18/343 (5%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENF- 129
           Y  N +V  L K  + K A E   +ME L +   +VS +  +H        G SS  N  
Sbjct: 228 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH--------GYSSRGNIE 279

Query: 130 -FENLPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
               + D MR     PD  T  +L+    +  +  EA  L +KM E G +   + YN ++
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           + Y + G L++      E+ KK   P V TYNL + A   +     A+    E++K  I 
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGII 399

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD I+Y+ L + Y +    +KA     EM  +      V Y+SL+ + +      E   +
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           ++K++      +   +  ++      G  E+A  +  E +  S   D    N L+     
Sbjct: 460 FEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 519

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             ++E A    + +  +GIKP + ++  L  GY ++G ++   
Sbjct: 520 EGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 562



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 166/358 (46%), Gaps = 20/358 (5%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +TC+ +L  +++  +   A  L  +M           +N M+N+    G+L K  + +  
Sbjct: 193 ETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGF 252

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++     P+VV+YN  +   +S+ + E A +    ++   I+PD  +Y +L S   K   
Sbjct: 253 MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGR 312

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-------YKDEVLRIWKKMMSLFAKM 312
            E+A+    +M +     N V Y++L+  Y N G       Y+DE+++  K +M      
Sbjct: 313 LEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK--KGIMP----- 365

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           + + Y  ++ +L   G   +A+++  E        D    NIL+  Y      + A   +
Sbjct: 366 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 425

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
           N +++KGI+P + T+  L +   ++ +M++  + F+K +   +   PD  +  A  +   
Sbjct: 426 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD--QGVSPDVIMFNAMVDGHC 483

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
             G+++ A  LL  +        E+ +N+L++   + GK+    ++++ M++  ++ D
Sbjct: 484 ANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 541



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 4/265 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+H+     +  EA+ ++++M + G +   + YN ++N Y   G   K   +  E 
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 428

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P  VTY   +   + +N  + A+  F ++    + PD I ++ +   +      
Sbjct: 429 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNV 488

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   LKEM++++   + V +++L+      G  +E   +  +M     K +   Y  +
Sbjct: 489 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 548

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   + G+ + A  + DE  SI         N L+       + ++AE     +V KGI
Sbjct: 549 ISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 608

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P  +T+  L  G    G ++ ++E
Sbjct: 609 SPDDSTYLSLIEGM---GNVDTLVE 630



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 119/275 (43%), Gaps = 11/275 (4%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K   P + T N  L+     N  E A   + E+ + +I     +++ + ++  K    +
Sbjct: 185 EKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLK 244

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   +  ME    + N V+Y++++  Y++ G  +   RI   M     + +   Y  +I
Sbjct: 245 KAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLI 304

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S + K G  E+A  ++D+   I    +    N L+  Y N+  LE A S+ + +V KGI 
Sbjct: 305 SGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIM 364

Query: 382 PCYTTWELLTWGYLKKGQM----EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           P  +T+ LL      +G+M    + + E  KK I      +PD        N     G+ 
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI------IPDAITYNILINGYSRCGNA 418

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             A  L   + + G   T + Y SL+   ++  +M
Sbjct: 419 KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 11/265 (4%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           + ++L +  C      + A K F  +K+  I P   + + + SL++K+   E A     E
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 217

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +         ++ ++++    G   +       M  L  K N   Y  +I      G 
Sbjct: 218 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 277

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E A  I D         D      L++      +LE A   ++++V  G+ P   T+  
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 390 LTWGYLKKGQMEKVL----ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           L  GY  KG +E+      E  KK I      V  + L+  A   L  +G +  A+ ++ 
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGI---MPSVSTYNLLVHA---LFMEGRMGEADDMIK 391

Query: 446 TLRNAGHVSTEI-YNSLLRTYAKAG 469
            +R  G +   I YN L+  Y++ G
Sbjct: 392 EMRKKGIIPDAITYNILINGYSRCG 416


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 40/389 (10%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGF-------------------------- 171
           PD  T + ++H   +  K  +A  L+++M   GF                          
Sbjct: 286 PDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI 345

Query: 172 -LKCPLPYNHMLNL----YISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQND 224
            +K P P N +LN     Y+ +GQL +    L E   N    PD+ TYN+ +     +  
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A     E+ +   +P+ I+Y+ L +   K  L E+A   L EM  R    N V Y+ 
Sbjct: 406 LSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC 465

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+            L +  +M +   K +   Y  +I  L K+   ++A  ++       
Sbjct: 466 LICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG 525

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              +    N L+ A + R   + A +  N ++ +G      T+  L   + K G +EK L
Sbjct: 526 AVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGL 585

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLR 463
           E +++ I  +     D        N L + G +D A   L    N G V   + YNS+L 
Sbjct: 586 ELYEQMI--MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643

Query: 464 TYAKAGKM--PLIIVERMQKDNVQMDAET 490
              K G++   L + +R+Q + V+ DA T
Sbjct: 644 GLCKVGRIKEALNLFDRLQVEGVRPDAFT 672



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 5/329 (1%)

Query: 144 SALLHSYVQNKKSAEAEALM-EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
           + L++ YV + +  EA++ + E M   GF      YN +++     G L     ++ E+ 
Sbjct: 358 NTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMS 417

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++   P+V+TY + +         E A     E+    +  + + Y+ L     + E   
Sbjct: 418 RRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVH 477

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   L EM  + C+ +   Y+SL+     +   DE  R++  M+   A  N+  Y  +I
Sbjct: 478 VALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLI 537

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            +L++ G F+KA  + ++      T D    N L+ A+     +E     Y +++  G+ 
Sbjct: 538 HALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLG 597

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
               +  ++  G  K G+++   E  + AI   R +VPD     +  N L + G I  A 
Sbjct: 598 ADTISCNIMINGLCKVGKVDNAFEFLRDAIN--RGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           +L   L+  G       YN+ +    K G
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEG 684



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 36/281 (12%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL 216
           EA  ++ +MS  G     + YN ++       ++     +L E+  K   PD+ TYN  +
Sbjct: 443 EAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLI 502

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                 +  + A + F  +       + ++Y+TL    ++    +KA T + +M  R C 
Sbjct: 503 YGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCT 562

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-------------------------SLFAK 311
            +++ Y+ L+  +  +G  ++ L ++++M+                         + F  
Sbjct: 563 LDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEF 622

Query: 312 MNDA----------EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           + DA           Y  V++ L K+G  ++A N++D  +      D    N  ++    
Sbjct: 623 LRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCK 682

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              +  A  F+ R +  G  P   TW +L +  LK+   E 
Sbjct: 683 EGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQEN 723



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 115/273 (42%), Gaps = 8/273 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K  SP V T+ + + A    N+ ++A     ++ K    P+ I Y TL     +    
Sbjct: 210 LSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQV 269

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L+EM    C  +   ++ ++     +    +  ++  +M+      ++  Y  +
Sbjct: 270 SEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL 329

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR-LVTKG 379
           +  L ++G+  +A  I  +    +      + N L+  Y+   QL+ A+SF N  ++  G
Sbjct: 330 LHGLCRIGKLNEARKILIKIPCPNNA----ILNTLINGYVMSGQLKEAQSFLNETMINFG 385

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            +P   T+ +L  G  K+G +    +   +   S R   P+        N L + G ++ 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEM--SRRGCEPNVITYAILVNGLCKAGLLEE 443

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           A  +L  +   G  +++ IYN L+    +  K+
Sbjct: 444 AGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 189/444 (42%), Gaps = 45/444 (10%)

Query: 40  TLGRRLLSLVYAKRS---AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEW 96
           TL + +  L   KR+     +  R+  E G+T   +  N +++ L   K+ + ALE+   
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 97  MELQ--YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQ 152
           M     Y+       Y+  +D   K   +  A   F+ +  +   PD  T S+L+    +
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCK 250

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVT 211
            +   +AEA+++ M + G +     YN M+  Y S GQL++  ++L+++      PDVVT
Sbjct: 251 AQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 310

Query: 212 YNLWL------AACA------------SQNDKETAEKAFLELKKTK---IDP-------- 242
           Y L +        CA             Q    T     L    TK   ID         
Sbjct: 311 YILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMI 370

Query: 243 -DWI-----SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
            D I     +++ L   Y K    +KA T   EM +   R + V+YS+++ +   +G  +
Sbjct: 371 RDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVE 430

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + +  + +M+S     N   +T +I  L  +GE++K E +  E  +     D    N ++
Sbjct: 431 DAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIM 490

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  ++  A+ F++ ++  G+KP   ++  L  GY   G+M++ ++ F + +    +
Sbjct: 491 DNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLR 550

Query: 417 WVPDHRLITAAYNKLEEQGDIDGA 440
             PD     A  N   + G ++ A
Sbjct: 551 --PDSWTYNALLNGYFKNGRVEDA 572



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 7/265 (2%)

Query: 210 VTYN-LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
           VT N L    C  +   +  +  F  + +    PD  SY+ L       +  ++A   L 
Sbjct: 130 VTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLL 189

Query: 269 EMEKR---TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            M       C  N V+YS+++  +   G  D+   ++ +M+      +   Y+ +I  L 
Sbjct: 190 HMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC 249

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K     KAE I           + R  NI++  Y +  QLE A     ++   G++P   
Sbjct: 250 KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV 309

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD-IDGAEHLL 444
           T+ LL   Y K G+  +    F   +   +K  P+  +     +    +G  ID  + L 
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQK--PNSTIYHILLHGYATKGALIDVRDLLD 367

Query: 445 VTLRNAGHVSTEIYNSLLRTYAKAG 469
           + +R+        +N L+  YAK G
Sbjct: 368 LMIRDGIPFEHRAFNILICAYAKHG 392



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/333 (18%), Positives = 138/333 (41%), Gaps = 9/333 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y+  + ++ KI  +  A   F  +  +   P+  S  +L+H      +  + E L  +M 
Sbjct: 416 YSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI 475

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
             G     +  N +++     G++ +        +     P+VV+YN  +         +
Sbjct: 476 NRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMD 535

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            + K F  +    + PD  +Y+ L + Y K    E A    +EM ++  +   +  + +L
Sbjct: 536 ESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIIL 595

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G       ++ KM+    ++    Y  V+  L +    ++A  ++++  S    
Sbjct: 596 HGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFE 655

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++ A +   +++ A+S ++ +V +G  P   T+ L+    +++G +E+  + 
Sbjct: 656 LDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDL 715

Query: 407 FKKAIGSVRK--WVPDHRLITAAYNKLEEQGDI 437
           F     S+ K     D  ++     +L E+GD+
Sbjct: 716 FL----SMEKNGCAADSHMLNVIIRRLLEKGDV 744


>gi|168005568|ref|XP_001755482.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693189|gb|EDQ79542.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 765

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 192/489 (39%), Gaps = 99/489 (20%)

Query: 43  RRL-LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
           RRL +  + +    A T+R   E G ++   +LN ++R   K+K+++ A  V E+M  + 
Sbjct: 162 RRLAMETLQSADDVAATLR---EVGDSLEIMDLNSVLRRFAKMKQWRDACAVFEYM--KE 216

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161
           + KL    Y  +  ++ K      A   F  LP            L S V+         
Sbjct: 217 NNKLSPPTYTSYFSVLGKSGQSRKAIRVFNELP------------LDSEVRKN------- 257

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
                       C    N +L+  I NG++DK  ++ ++LKK    PD VTY+  +A CA
Sbjct: 258 ---------VFVC----NSILSTMIYNGKIDKAFRLFEQLKKEGLQPDTVTYSTVIAGCA 304

Query: 221 SQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              D  +   A +E +K + +  D + Y  + ++     L  +A  T +EM       N 
Sbjct: 305 KTRDGYSKALALIEDIKASGLTQDAVIYGAMMNVCASQGLDREAQATFQEMCDAGFTPNL 364

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             YSSLL+ Y + G   +  R+ + + +     N   Y  ++++        KA  ++D 
Sbjct: 365 FHYSSLLNAYASRGKYQQAERVLEAIRAAGLTPNLVVYNSLMNAYANCQMPSKAREVFDR 424

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT-------- 391
            E+     D      ++ AY   + L+ A+  ++ ++ +G+KP Y   +LL         
Sbjct: 425 IEAEGLQRDMVSFCSMMDAYAKSDMLKEAQETFDSMIAQGMKPVYMLMQLLDLSGSLCSY 484

Query: 392 --WG----------YLKKGQMEKVL------------EC----------------FKKAI 411
             WG          Y K G+M+ VL            EC                +   +
Sbjct: 485 GWWGSVGYSILISAYAKLGEMDGVLKLVDQIEKGQNGECDILLFNTLLKVYCNAGYMDGV 544

Query: 412 GSVRKWVPDHRL--------ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLL 462
            +V K +             I   Y   E+ GD+  A   L  +   GH   E  YN+L 
Sbjct: 545 TAVLKKMDAEGCGSDRGTFNILIGYFAKEDLGDL--ALKTLEDMETRGHRPNEATYNALF 602

Query: 463 RTYAKAGKM 471
           + Y K GKM
Sbjct: 603 QGYVKNGKM 611



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           Y+ +++ Y   G++D V +++ +++K  N   D++ +N  L    +    +       ++
Sbjct: 492 YSILISAYAKLGEMDGVLKLVDQIEKGQNGECDILLFNTLLKVYCNAGYMDGVTAVLKKM 551

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
                  D  +++ L   + K +L + A  TL++ME R  R N   Y++L   Y   G  
Sbjct: 552 DAEGCGSDRGTFNILIGYFAKEDLGDLALKTLEDMETRGHRPNEATYNALFQGYVKNGKM 611

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG--EFEKAENIYDEWESISGTG---DPR 350
           +E+    + M     K      T +    + LG  E  + + +   +  +  TG      
Sbjct: 612 EEMFEALEAM-----KQRGITPTNLSLQTIMLGCIEHNRIDVVLAYFPYLKATGIALSYS 666

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           V   L+ A +   Q+++ +   + + T G +P   TW+L+   Y+  G
Sbjct: 667 VMERLVEALVETGQMDVVKDALHLMQTTGQQPSQKTWDLVLQKYVSLG 714


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 165/370 (44%), Gaps = 15/370 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           + + L+ + +  G+  A++  +++  K    D    S+L+  Y +    + A +++++M+
Sbjct: 484 FDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMT 543

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
           E       + YN +    +  G+ +      + ++   +PD VTYN  +     Q   E 
Sbjct: 544 EKDMQFDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTEN 603

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A     E+K   + P+ ++Y+ L     K    EK  + L EM         + +  LL 
Sbjct: 604 ALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLK 663

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y+     D +L+I KK++ +   +N   Y  +I+ L +LG  +KA  +  E      + 
Sbjct: 664 AYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISA 723

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D    N L+  Y   + +E A + Y++++  GI P  TT+  L  G    G M       
Sbjct: 724 DIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDA---- 779

Query: 408 KKAIGSVRK--WVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSL 461
            K +  +R+   VP+   + ++ + + ++  + D   +  L   +   G + +T  YN L
Sbjct: 780 DKLVSEMRERGLVPNATTYNILVSGHGRVGNKRD---SIKLYCEMITKGFIPTTGTYNVL 836

Query: 462 LRTYAKAGKM 471
           ++ YAKAGKM
Sbjct: 837 IQDYAKAGKM 846



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 9/316 (2%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K RG+    + +E +      PD  TCS++L+   ++ K  EA  L+ +M   G     +
Sbjct: 248 KHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHV 307

Query: 177 PYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  +++  + +G+ ++      Q + +  S D+V     +         + AE+ F  +
Sbjct: 308 SYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTI 367

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K  + P+ ++Y+ L   + K+   E A T L++MEK     N V +SS+++ Y   G  
Sbjct: 368 LKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGML 427

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++ + + +KM+ +    N   Y  ++    + G+ E A   Y E +S     +  + +IL
Sbjct: 428 NKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDIL 487

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L        ++ A+S    +++KGI      +  L  GY K+G     L   ++      
Sbjct: 488 LNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEK-- 545

Query: 416 KWVPDHRLITAAYNKL 431
               D +    AYN L
Sbjct: 546 ----DMQFDVVAYNAL 557



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 140/332 (42%), Gaps = 17/332 (5%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T ++++++Y    K+  A  L+ +M   G +   + YN ++      G ++KV  +
Sbjct: 583 PDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISV 642

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L E L     P  + +   L A +     +   +   +L    ++ + + Y+TL ++  +
Sbjct: 643 LHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCR 702

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           + + +KA   L EM  +    + V Y++L+  Y    + ++    + +M+      N   
Sbjct: 703 LGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITT 762

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  ++  L   G    A+ +  E        +    NIL++ +        +   Y  ++
Sbjct: 763 YNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMI 822

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEE 433
           TKG  P   T+ +L   Y K G+M +  E   + +   R  +P+   + ++   + KL  
Sbjct: 823 TKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEML--TRGRIPNSSTYDVLICGWCKLSC 880

Query: 434 QGDID---------GAEHLLVTLRNAGHVSTE 456
           Q ++D          A+ LL  +   GHV +E
Sbjct: 881 QPEMDRLLKLSYQNEAKKLLREMCEKGHVPSE 912



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 73/396 (18%), Positives = 148/396 (37%), Gaps = 61/396 (15%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL+ +  +   ++ + L  +M  CG +      N +++     G L      L    +N+
Sbjct: 16  LLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYL----RNS 71

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
             D VTYN  +     +   +       E+ K  +  D ++ + L   Y ++ L + A  
Sbjct: 72  VFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEW 131

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            +  +       + +  ++L+  Y  +G     L + +       K +   Y  ++++  
Sbjct: 132 IMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFC 191

Query: 326 KLGEFEKAENIYDEW-----------------ESISGTGD--PRVPN--ILLAAYINRNQ 364
           K G+  KAE++ +E                  E+  G  D  P V     L+AAY     
Sbjct: 192 KRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRG 251

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME----------------------- 401
           ++   S Y +++  G+ P   T   + +G  + G++                        
Sbjct: 252 IDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTT 311

Query: 402 ---------KVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
                    +V+E F  ++   VR    D  L T   + L + G    AE +  T+    
Sbjct: 312 IISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLN 371

Query: 452 HVSTEI-YNSLLRTYAKAGKMPL--IIVERMQKDNV 484
            V   + Y +LL  + K G +     ++++M+K++V
Sbjct: 372 LVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHV 407


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  G  +KV ++  E+  + +  PD VTY+  +AA       ++A   F E+
Sbjct: 197 YNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+T+  +Y K+   EKA   ++EM+++ C      Y+ L+      G  
Sbjct: 257 KENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKV 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           +E   I+  M+    K +      +I+ L K G    A  +++E ES+  T +    N +
Sbjct: 317 EEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTV 376

Query: 356 LAAYINRNQLEMAESF--YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           + A    ++   +E+F  Y ++   G+ P   T+ +L  G+ K  ++EK L   ++    
Sbjct: 377 IKALF-ESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEM--D 433

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
            + + P      +  N L +    + A  L   LR N G+ S  +Y  +++   K G++
Sbjct: 434 EKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 5/273 (1%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +N ++  L K  R   A+++ E ME LQ    +V+ +  +     SK R  S A  ++E 
Sbjct: 338 INNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARA-SEAFLWYEK 396

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           + +    P   T S L+  + +  +  +A  L+E+M E GF  CP  Y  ++N      +
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 191 LDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +   ++ QEL++N        Y + +           A   F E+KK   +PD  +Y+ 
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L S  +++ + ++A + L+ ME+  C  +  +++ +L+ +   G     + ++ +M +  
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
            K +   Y  V+  L + G FE+A  +  E  S
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNS 609



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 49/325 (15%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFL---E 234
           N+++NL    G+L    ++ +E++    +P+VVTYN  + A      K  A +AFL   +
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFES--KARASEAFLWYEK 396

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS------- 287
           +K+  + P   +YS L   + K    EKA   L+EM+++       AY SL++       
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 288 ----------LYTNMGYKD------------------EVLRIWKKMMSLFAKMNDAEYTC 319
                     L  N GY                    E + ++ +M  L    +   Y  
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++S +V++G  ++A ++    E    T D    NI+L  +      + A   + R+    
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-VPDHRLITAAYNKLEEQGDID 438
           IKP   ++  +     + G  E+  +  K+      ++ +  +  I  A  K++E     
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTPA 636

Query: 439 GAEHLLVT-------LRNAGHVSTE 456
           G   + +        +R  GHVS+E
Sbjct: 637 GQTVMHIVNIKIINLVRREGHVSSE 661



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 4/229 (1%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K KE G     +  + ++    K  R + AL + E M+ +         Y   ++ + K 
Sbjct: 396 KMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMD-EKGFAPCPAAYCSLINALGKA 454

Query: 121 RGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           +   +A   F+ L +          + ++    +  + +EA  L  +M + G       Y
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +++  +  G  D+   +L+ +++N  +PD+ ++N+ L   A     + A + F  +K 
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN 574

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +KI PD +SY+T+     +  + E+AA  +KEM  +    + + YSS+L
Sbjct: 575 SKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 202/473 (42%), Gaps = 55/473 (11%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME--------LQYDIKL 105
           +A    R ++  G   + Y    ++  L   +R   AL++  WME          ++  +
Sbjct: 200 AATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALM 259

Query: 106 V------SGDYAVHL-----------DLISKIRGLSSAE------NFFENLPDKMRGPDT 142
           V      SGD AV L           D I+   GL SA       +  ++  D M+    
Sbjct: 260 VACGRCASGDTAVELFEEMEKLGIVPDRIT-FTGLVSATTAAGLWDRAQSFIDMMQARGF 318

Query: 143 CSALLHSYVQ-------NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKV 194
            S  LH Y++        +K  EA  L + M E G+      YN +L  Y    Q  D +
Sbjct: 319 -SIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAM 377

Query: 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
              +    K  +PDV++++  ++ACA+    E A +    +K +   P+ +S+  L   Y
Sbjct: 378 RTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAY 437

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K    EKA      M    C  N VA+ SLLS Y       +VL   +K+  L  K++ 
Sbjct: 438 QKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDV 497

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAE 369
             ++  IS+L K G++E AE   ++++ ++ +G   +PNI     L+ AY +    E AE
Sbjct: 498 VAWSTTISALAKAGQWELAE---EKFKQMTKSGC--LPNIVTYSSLIKAYGDVGLWEKAE 552

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
           S +  ++  GI+P       L   Y K  ++EKV+  F +++       PD     A + 
Sbjct: 553 SVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVI-IFFESMEPQYGVEPDKYAYAAIFW 611

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERM 479
                G+   A   +  +  AG    + IY +L+  Y   G++   + ++ERM
Sbjct: 612 ACWTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERM 664


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 26/376 (6%)

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           + F  + DK   P+  T + L++         +A  L+++M E GF+   + YN +LN Y
Sbjct: 219 SLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWY 278

Query: 186 ISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK---ID 241
              G+     +++   + K    DV TYN+++    + +    + KA+L LKK +   I 
Sbjct: 279 CKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNH---RSAKAYLLLKKMRKEMIS 335

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P+ ++Y+TL + ++K      AA    EM K     N V Y++L+  + ++G  +E LR+
Sbjct: 336 PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRL 395

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M +   ++N+             G   +A  +Y          D    N+L+++   
Sbjct: 396 LDHMEAAGLRLNEH------------GNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCR 443

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
             +L  AE F   +   G+ P   T++ +  GY   G        F   I   +   P  
Sbjct: 444 DGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQH--PSF 501

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGKM--PLIIVER 478
               +    L + G++  A+  L  L    G V + +YN+LL    K+G +   + + ++
Sbjct: 502 FTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDK 561

Query: 479 MQKDNVQMDAETQKVL 494
           M ++NV  D+ T   L
Sbjct: 562 MVQNNVLPDSYTYSSL 577



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 142/392 (36%), Gaps = 54/392 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQE 200
           TC+ L+ S  ++ K  EAE  +  MS  G +   + Y+ ++N Y S G  L+        
Sbjct: 433 TCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM 492

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K    P   TY   L       +   A+K    L       D + Y+TL +   K    
Sbjct: 493 IKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNL 552

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM---SLFAKMNDAEY 317
            +A     +M +     +   YSSLL+     G     + ++   M   +LF   N   Y
Sbjct: 553 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFP--NHVMY 610

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           TC++  L K G  + A   ++E        D    N ++ +   R Q+  A  F++ +  
Sbjct: 611 TCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRW 670

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA----------------IGSVRKWVPD- 420
            G+ P   T+ +L  G+ KK  + + L  +                   +G  +  +PD 
Sbjct: 671 WGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDL 730

Query: 421 ----------------------------HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
                                       H       N +   GDI GA  L   +   G 
Sbjct: 731 GVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 790

Query: 453 VSTEIYNS-LLRTYAKAGKM--PLIIVERMQK 481
            S E+  S ++R     GK    +++++ M +
Sbjct: 791 GSHEVAESAMVRGLLHCGKTEDAMLVLDHMLR 822



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/446 (18%), Positives = 163/446 (36%), Gaps = 64/446 (14%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           + A   +++ +E G        N ++    K  RYK A+E+ ++M  +  I+     Y V
Sbjct: 250 KKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNV 308

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +D +      + A    + +  +M  P+  T + L++ +V+  K   A  +  +MS+  
Sbjct: 309 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFD 368

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------KNTS 206
                + YN ++  +   G  ++  ++L  ++                            
Sbjct: 369 LSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHGNVTEAMKVYAVMNCNGHG 428

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
            D  T N+ +++         AEK    + +  + P+ I+Y  + + Y  +  P  A + 
Sbjct: 429 ADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSF 488

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             +M K     +   Y SLL                                     L K
Sbjct: 489 FDDMIKCGQHPSFFTYGSLL-----------------------------------KGLCK 513

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G   +A+   +    I G  D  + N LLA       L  A + ++++V   + P   T
Sbjct: 514 GGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYT 573

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G  +KG+    +  F  A+G      P+H + T   + L + G    A +    
Sbjct: 574 YSSLLTGLCRKGKAVTAVCLFGTAMGR-GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEE 632

Query: 447 LRNAGHV-STEIYNSLLRTYAKAGKM 471
           +   G    T  +N+++ + ++ G+M
Sbjct: 633 MMKKGTCPDTVAFNAIIDSCSRRGQM 658



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/217 (16%), Positives = 93/217 (42%), Gaps = 12/217 (5%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +KK T PD V +N  + +C+ +     A   F  ++   + P+  +Y+ L   + K +  
Sbjct: 634 MKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQAL 693

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-----SLFAKM--- 312
            +  +    M +     +++ + SL+   +  G  D  +++  KM+      +  +M   
Sbjct: 694 LRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLEN 753

Query: 313 ----NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
                 A+Y  +I+ + ++G+ + A  + DE E++         + ++   ++  + E A
Sbjct: 754 GVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDA 813

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
               + ++   + P   T+  L   + +  ++ + L+
Sbjct: 814 MLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALK 850



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H + ++ K AEA  L   M  CG     + YN ++    +NG      ++ +E+
Sbjct: 831 TFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEM 890

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           + ++  P++ TY + + A ++ N+    EK   +L++
Sbjct: 891 RHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQE 927


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 123/300 (41%), Gaps = 3/300 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           S+ L +         A  + +++ E G L     Y  M++ Y + G+ DK  Q    L K
Sbjct: 444 SSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLK 503

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               P ++TY L + AC+       AE  F  +K   + PD ++Y+ L   Y K     K
Sbjct: 504 SGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNK 563

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
               + EM       +   Y+ L+      GY DE   I  +++      +   +T VI 
Sbjct: 564 VFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIG 623

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L K G+F++A  ++     +    D    + LL  Y    ++E A   +++L+  G+KP
Sbjct: 624 GLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKP 683

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               +  L  GY   G +EK  E     +   R  +P+     A    LE +  ++  EH
Sbjct: 684 DVVLYNTLIHGYCSVGDIEKACELIGLMVQ--RGMLPNESTHHALVVGLEGKRFMNSEEH 741



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 5/267 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P++  Y+ +L+   S  D   A   F E+ +  + PD   Y+T+   Y  +   +KA   
Sbjct: 438 PNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQF 497

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
              + K     + + Y+ L+   +  G   +   +++ M +     +   Y  ++    K
Sbjct: 498 FGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGK 557

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
             +  K   + DE  S   + D    NIL+ + + R  ++ A    + L+ +G  P    
Sbjct: 558 THQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALA 617

Query: 387 WELLTWGYLKKGQM-EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           +  +  G  K+G   E  +  F  A   V+   PD    +A  +       ++ A  L  
Sbjct: 618 FTDVIGGLSKRGDFQEAFILWFYMADLRVK---PDVVTCSALLHGYCRAQRMEKAIVLFD 674

Query: 446 TLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            L +AG      +YN+L+  Y   G +
Sbjct: 675 KLLDAGLKPDVVLYNTLIHGYCSVGDI 701



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 120 IRGLSSAENFFEN------LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           I GLS   +F E       + D    PD  TCSALLH Y + ++  +A  L +K+ + G 
Sbjct: 622 IGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGL 681

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + YN +++ Y S G ++K  +++  + ++   P+  T++  +     +    + E 
Sbjct: 682 KPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGLEGKRFMNSEEH 741

Query: 231 AFLELKKTKI 240
           A + L++  +
Sbjct: 742 ASMLLEEIVV 751


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 186/445 (41%), Gaps = 17/445 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +V      K +    ++CEW+      +   G Y + +D   K   +  AE  F  + + 
Sbjct: 74  VVVHFWNYKDWPRVTQMCEWVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEA 133

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
           +  P+  T   L++ Y       +AE L  +M + G+   PL  N  L++     +  + 
Sbjct: 134 LCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRA 193

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             + ++L+K    P++ TYN  +       +   AE  +  +++    P+  +++ L + 
Sbjct: 194 EALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNA 253

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L  +A     ++++   + +  AY++L+  Y+  G     L I++ M       +
Sbjct: 254 FARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD 313

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              +  +I++  + G +E AE I+   +S   + + +   +LL+AY    ++E AE   +
Sbjct: 314 TVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVS 373

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKL- 431
            +   G KP    +  L   Y   G+ E +     K + S  K   PD       YN L 
Sbjct: 374 AMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPD----IGTYNTLI 429

Query: 432 ---EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQ 485
               + G I  AE L   L     V     + +L+  YAK    +    I+++M +   +
Sbjct: 430 QVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCR 489

Query: 486 MDAETQKVLKITSEMP--VSEVSSI 508
            DA T +VL      P  V +V+ +
Sbjct: 490 ADAVTARVLFSACRSPEQVEQVTQL 514


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 165/368 (44%), Gaps = 22/368 (5%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           + NR+   + K K+Y+  L +C+ ME   + + I  +S    + ++   + R LS A   
Sbjct: 90  DFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS----IMINCFCRCRKLSYA--- 142

Query: 130 FENLPDKMR---GPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           F  +   M+    PDT   + LL+      + +EA  L+++M E G     +  N ++N 
Sbjct: 143 FSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNG 202

Query: 185 YISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
              NG++ D V  + + ++    P+ VTY   L           A +   ++++  I  D
Sbjct: 203 LCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            + YS +     K    + A     EME +  + + + Y++L+  + N G  D+  ++ +
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
            M+      N   ++ +I S VK G+  +A+ +  E        +    N L+  +   N
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           +LE A    + +++KG  P   T+ +L  GY K  +++  LE F++   S+R  + +   
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM--SLRGVIAN--- 437

Query: 424 ITAAYNKL 431
            T  YN L
Sbjct: 438 -TVTYNTL 444



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 7/302 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++    N K ++A  L+++M E GF    + Y  +LN+   +GQ     ++L+++
Sbjct: 195 TLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +N   D V Y++ +         + A   F E++      D I+Y+TL   +      
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +  A  L++M KR    N V +S L+  +   G   E  ++ K+MM      N   Y  +
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I    K    E+A  + D    IS   DP +   NIL+  Y   N+++     +  +  +
Sbjct: 375 IDGFCKENRLEEAIQMVDLM--ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+     T+  L  G+ + G++E   + F++ +   R+  PD        + L + G+++
Sbjct: 433 GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS--RRVRPDIVSYKILLDGLCDNGELE 490

Query: 439 GA 440
            A
Sbjct: 491 KA 492



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/444 (18%), Positives = 181/444 (40%), Gaps = 40/444 (9%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A + + +  E G   ++     ++  + K  +   A+E+   ME + +IKL +  Y++ +
Sbjct: 212 AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKYSIII 270

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           D + K   L +A N F  +  K                                 GF   
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIK---------------------------------GFKAD 297

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN ++  + + G+ D   ++L+++ K+  SP+VVT+++ + +   +     A++   
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+ +  I P+ I+Y++L   + K    E+A   +  M  + C  + + ++ L++ Y    
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D+ L ++++M       N   Y  ++    + G+ E A+ ++ E  S     D     
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           ILL    +  +LE A   + ++    ++     + ++  G     +++   + F      
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL--P 535

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP 472
           ++    D R      ++L  +  +  A+ L   +   GH   E+ YN L+R +       
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595

Query: 473 LI--IVERMQKDNVQMDAETQKVL 494
               ++E M+      D  T K++
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMV 619


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQ 196
           T + LL     +K++++A + ++ +M+E G +     YN++L        S   L+ +  
Sbjct: 129 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHM 188

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M  +    + PDVV+YN  L     + D + A   + E+    I PD ++YS++ +   K
Sbjct: 189 MADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 248

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  +KA   L  M K     + + Y+S+L  Y + G   E +   KKM S   + N   
Sbjct: 249 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT 308

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y+ +++ L K G   +A  I+D         D      LL  Y  +  L    +  + +V
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV 368

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             GI+P +  + +L   Y K+ ++++ +  F K
Sbjct: 369 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSK 401



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 121/273 (44%), Gaps = 1/273 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S+L++   +N +S EA  + + M++ G       Y  +L  Y + G L ++  +L  +
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +N   PD   +N+ + A A Q   + A   F ++++  ++P+ + Y T+  +  K    
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    ++M       N + Y+SL+         D+   +  +M+     +N   +  +
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I S  K G   ++E ++D    I    D    N L+       +++ A      +V+ G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           KP   T+  L  GY +  +M+  L  FK+ + S
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/331 (18%), Positives = 142/331 (42%), Gaps = 5/331 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D++ K   +  A  +FE + D+   P+    ++L+H      K  +AE L+ +M 
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G     + +N +++ +   G++ +  ++   + +    PD++TYN  +  C      +
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K    +    + PD ++Y TL + Y ++   + A    KEM       N + Y+ +L
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
               +         ++  +     ++  + Y  ++  L K    ++A  ++         
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            + R  NI++ A +   +++ A+  +      G+ P   T+ L+    +++G +E++ + 
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           F            D R++ +   KL ++GDI
Sbjct: 714 FLSM--EENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 155/388 (39%), Gaps = 44/388 (11%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD----IKLVSGDYAV 112
           I +R+  E G     +  N +++ L    R + ALE+   M           +VS  Y  
Sbjct: 149 IVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS--YNT 206

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            L+   K      A + +  + D+   PD  T S+++ +  + +   +A  ++  M + G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
            +   + YN +L+ Y S+GQ  +    L++++ +   P+VVTY+  +           A 
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 230 KAFLELKKTKIDPDWISYST-----------------------------------LTSLY 254
           K F  + K  ++PD  +Y T                                   L   Y
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K E  ++A     +M +     N V Y +++ +    G  D+ +  +++M+      N 
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +I  L    +++KAE +  E        +    N ++ ++    ++  +E  ++ 
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           +V  G+KP   T+  L  G    G+M++
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDE 534


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQ 196
           T + LL     +K++++A + ++ +M+E G +     YN++L        S   L+ +  
Sbjct: 129 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHM 188

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M  +    + PDVV+YN  L     + D + A   + E+    I PD ++YS++ +   K
Sbjct: 189 MADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 248

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  +KA   L  M K     + + Y+S+L  Y + G   E +   KKM S   + N   
Sbjct: 249 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT 308

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y+ +++ L K G   +A  I+D         D      LL  Y  +  L    +  + +V
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV 368

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             GI+P +  + +L   Y K+ ++++ +  F K
Sbjct: 369 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSK 401



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 121/273 (44%), Gaps = 1/273 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S+L++   +N +S EA  + + M++ G       Y  +L  Y + G L ++  +L  +
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +N   PD   +N+ + A A Q   + A   F ++++  ++P+ + Y T+  +  K    
Sbjct: 368 VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    ++M       N + Y+SL+         D+   +  +M+     +N   +  +
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I S  K G   ++E ++D    I    D    N L+       +++ A      +V+ G+
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           KP   T+  L  GY +  +M+  L  FK+ + S
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 580



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/331 (18%), Positives = 142/331 (42%), Gaps = 5/331 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D++ K   +  A  +FE + D+   P+    ++L+H      K  +AE L+ +M 
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G     + +N +++ +   G++ +  ++   + +    PD++TYN  +  C      +
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K    +    + PD ++Y TL + Y ++   + A    KEM       N + Y+ +L
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
               +         ++  +     ++  + Y  ++  L K    ++A  ++         
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            + R  NI++ A +   +++ A+  +      G+ P   T+ L+    +++G +E++ + 
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           F            D R++ +   KL ++GDI
Sbjct: 714 FLSM--EENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 155/388 (39%), Gaps = 44/388 (11%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD----IKLVSGDYAV 112
           I +R+  E G     +  N +++ L    R + ALE+   M           +VS  Y  
Sbjct: 149 IVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS--YNT 206

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            L+   K      A + +  + D+   PD  T S+++ +  + +   +A  ++  M + G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
            +   + YN +L+ Y S+GQ  +    L++++ +   P+VVTY+  +           A 
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 230 KAFLELKKTKIDPDWISYST-----------------------------------LTSLY 254
           K F  + K  ++PD  +Y T                                   L   Y
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K E  ++A     +M +     N V Y +++ +    G  D+ +  +++M+      N 
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +I  L    +++KAE +  E        +    N ++ ++    ++  +E  ++ 
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           +V  G+KP   T+  L  G    G+M++
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDE 534


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 96/470 (20%), Positives = 199/470 (42%), Gaps = 63/470 (13%)

Query: 94  CEWMELQYDIKLVSGDYAVH-------LDLISKIRGLSSAENFFENLPDKMRGPDTCS-- 144
           C  + L++   LVS  YA H       +  + K+  +  A +   ++P     PD  S  
Sbjct: 36  CGALSLKFLAYLVSRGYAPHRSSFNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYN 95

Query: 145 ALLHSYVQNKKSAEAEALMEKM-SECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL 201
           +L+  + +N     A  ++E + +  GF   P  + +N + N +     LD+V   +  +
Sbjct: 96  SLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVM 155

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            K  SP+VVTY+ W+       + + A K+F  +K+  + P+ ++++ L   Y K    E
Sbjct: 156 LKCCSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLE 215

Query: 262 KAATTLKEMEK---------------RTCRK--------------------NRVAYSSLL 286
              +  +EM +                 C+K                    N + Y++++
Sbjct: 216 VVVSLYEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTII 275

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +   G  D  ++   KM++   +++   Y  +IS L  +G+ ++A  I ++ E     
Sbjct: 276 NGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLV 335

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE- 405
            D  +   ++ AY    +++ A + Y++L+ +G +P       +  G  K GQ+ + +  
Sbjct: 336 PDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISY 395

Query: 406 -CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLR 463
            C +KA         +  + T   + L ++ D    E L   +  AG V  + +Y S + 
Sbjct: 396 FCTEKA---------NDVMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIA 446

Query: 464 TYAKAGKM--PLIIVERMQKDNVQMD--AETQKVLKITSEMPVSEVSSIF 509
              K G +     +  +M ++ +++D  A T  +  +TS+  + E   +F
Sbjct: 447 GLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVF 496



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 127/311 (40%), Gaps = 8/311 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T +AL+  + +  +   A  +  +M E       L Y  ++N +   G  D   + L + 
Sbjct: 235 TYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKM 294

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L +    D+  Y + ++        + A +   +++K  + PD + ++T+ + Y K    
Sbjct: 295 LNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRM 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     ++ +R    + VA S+++      G   E +  +        K ND  YT +
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCT-----EKANDVMYTVL 409

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +L K  +F + E ++ +        D  +    +A    +  L  A     ++V +G+
Sbjct: 410 IDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGL 469

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +     +  L +G   KG M +  + F + + S     PD  +        E++G++  A
Sbjct: 470 ELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRS--GVCPDSAVFDLLIRAYEKEGNMTTA 527

Query: 441 EHLLVTLRNAG 451
             LL+ ++  G
Sbjct: 528 SDLLLDMQTRG 538



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 6/227 (2%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYN 213
           K  EA  ++E M +   +   + +  M+N Y  +G++     M  +L ++   PDVV  +
Sbjct: 318 KLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALS 377

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +   A       A   F   K   +      Y+ L     K E   +      ++ + 
Sbjct: 378 TMIDGIAKNGQLHEAISYFCTEKANDV-----MYTVLIDALCKEEDFIEVERLFSKISEA 432

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               ++  Y+S ++     G   +  ++  KM+    +++   YT +I  L   G   +A
Sbjct: 433 GLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEA 492

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
             ++DE        D  V ++L+ AY     +  A      + T+G+
Sbjct: 493 RQVFDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASDLLLDMQTRGL 539


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 3/331 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +++QN +  +A  ++++M E G       YN ++       ++D+    L E+ +
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   P+  TY  +++     ++  +A+K   E+++  + P+ +  + L + Y K E   +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIE 575

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A +  + M  +    +   Y+ L++        D+   I+++M       +   Y  +I+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              KLG  +KA +I+DE      T +  + N+LL  +    ++E A+   + +  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  GY K G + +    F +    ++  VPD  + T   +      D++ A  
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
           +  T +     ST  +N+L+    K GK  L
Sbjct: 754 IFGTNKKGCASSTAPFNALINWVFKFGKTEL 784



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 136/330 (41%), Gaps = 4/330 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           ++L+  Y + K   +   L+ +M +   +  P  Y  ++    S+G LD    +++E+  
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               P+VV Y   +      +    A +   E+K+  I PD   Y++L     K +  ++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A + L EM +   + N   Y + +S Y          +  K+M       N    T +I+
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLIN 565

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K  +  +A + Y         GD +   +L+      ++++ AE  +  +  KGI P
Sbjct: 566 EYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              ++ +L  G+ K G M+K    F + +       P+  +           G+I+ A+ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVE--EGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           LL  +   G H +   Y +++  Y K+G +
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 143/371 (38%), Gaps = 56/371 (15%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ + K   +  AE  F  +  K   PD  S   L++ + +     +A ++ ++M 
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E G     + YN +L  +  +G+++K  ++L E+  K   P+ VTY   +       D  
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-------------- 272
            A + F E+K   + PD   Y+TL     ++   E+A T     +K              
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774

Query: 273 ------------------------RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                                   R  + N V Y+ ++      G  +    ++ +M + 
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
                   YT +++   K+G   +   ++DE  +     D  + ++++ A++       A
Sbjct: 835 NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894

Query: 369 -----ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVR-KWVP 419
                + F    V  G K   +T   L  G+ K G+M   EKV+E        VR +++P
Sbjct: 895 LVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME------NMVRLQYIP 948

Query: 420 DHRLITAAYNK 430
           D   +    N+
Sbjct: 949 DSATVIELINE 959



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/415 (18%), Positives = 157/415 (37%), Gaps = 57/415 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+    + K+  +A++L+ +M   G       Y+ +++  +     D    ++ E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 202 KK---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                N  P    Y+  +   + +   E A+  F  +  + + P   +Y++L   Y + +
Sbjct: 339 VSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +    L EM+KR    +   Y +++    + G  D    I K+M++   + N   YT
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I + ++   F  A  +  E +      D    N L+       +++ A SF   +V  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKK------------AIGSVRKWVPDHRLITA 426
           G+KP   T+     GY++  +     +  K+              G + ++    ++I A
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEA 576

Query: 427 --AYNKLEEQG-------------------DIDGAEHLLVTLRNAGHVSTEI--YNSLLR 463
             AY  + +QG                    +D AE +   +R  G ++ ++  Y  L+ 
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLIN 635

Query: 464 TYAKAGKM----------------PLIIVERMQKDNVQMDAETQKVLKITSEMPV 502
            ++K G M                P +I+  M         E +K  ++  EM V
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELK 202
           + +LH+Y +  K   A  + EKM + G     + YN ML++Y   G+  +K+  +L E++
Sbjct: 213 TTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMR 272

Query: 203 KNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            N    D  T +  ++AC  +   + A K F  LK         +Y++L  ++ K  +  
Sbjct: 273 SNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYS 332

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A + LKEMEK  C  + V Y+ L++ Y   G+ +E       M+      N   YT VI
Sbjct: 333 EALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392

Query: 322 SSLVKLGEFEKAENIYDEW--------------------------ESISGTGDPR----V 351
           ++  K G+ +KA + + +                           E I    D R     
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCA 452

Query: 352 P-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
           P     N +LA   N+   +     +  + + G +P   T+  L   Y + G    V++ 
Sbjct: 453 PNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKM 512

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           +++ I +   + P      A  N L  +GD + AE +++ +++ G    E  Y+ +L  Y
Sbjct: 513 YEEMIKA--GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCY 570

Query: 466 AKAG 469
           AK G
Sbjct: 571 AKGG 574



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 162/388 (41%), Gaps = 43/388 (11%)

Query: 123 LSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LP 177
           L  A  FF  L  +  + G  T ++LL  + +    +EA +++++M +     CP   + 
Sbjct: 296 LDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN---NCPPDLVT 352

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y+  G  ++    +  + +K   P+ +TY   + A      ++ A   F ++K
Sbjct: 353 YNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMK 412

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           ++   P+  +Y+ +  +  K    E+    L +M    C  N V ++++L++  N G   
Sbjct: 413 ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHK 472

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
            V R++++M S   + N   +  +I +  + G       +Y+E      T      N LL
Sbjct: 473 YVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALL 532

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEK----------- 402
            A   R   E AES    + +KG KP  T++ L+   Y K G    +EK           
Sbjct: 533 NALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIF 592

Query: 403 ---------VLECFKKA--IGSVRK--------WVPDHRLITAAYNKLEEQGDIDGAEHL 443
                    VL  FK+   +G  R         + PD  L  +  +   +    D A  +
Sbjct: 593 PSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM 652

Query: 444 LVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           L  +R +G       YNSL+  YA+ G+
Sbjct: 653 LRLIRESGLQPDLVTYNSLMDMYARGGE 680



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 1/266 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT +AL+ +Y +     +   + E+M + GF  C   YN +LN     G  +    ++ +
Sbjct: 491 DTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILD 550

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K K   P+  +Y+L L   A   +    EK   E+    I P WI   TL     K   
Sbjct: 551 MKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRA 610

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
                   +E  K   + + V ++S+LS++      D    + + +     + +   Y  
Sbjct: 611 LMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNS 670

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    + GE  K E I    +   G  D    N ++  +  +  ++ A    + +   G
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLE 405
           I+PC  T+     GY  KG   +V E
Sbjct: 731 IRPCIVTYNTFVAGYSGKGMFSEVEE 756



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 1/157 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML+++  N   D+  +ML+ ++++   PD+VTYN  +   A   +    E+    ++
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K+   PD +SY+T+   + +  L ++A  TL EM     R   V Y++ ++ Y+  G   
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFS 752

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           EV  +   M+    + N+  Y  V+    K  ++++A
Sbjct: 753 EVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEA 789



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 129/332 (38%), Gaps = 67/332 (20%)

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +LNLY  N ++D   Q+++              L +     ++    A +   E+   + 
Sbjct: 162 ILNLYSRNEKIDN--QLVE--------------LMVRILGRESQHSVALRLLDEISVEEY 205

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             D  +++T+   Y ++   E+A T  ++M K       V Y+ +L +Y  MG      R
Sbjct: 206 SLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMG------R 259

Query: 301 IWKKMMSLFAKMNDA-----EYTC--VISSLVKLGEFEKAENIYDEWES---ISGT---- 346
            W K++ L  +M        E+TC  VIS+  + G  ++A   +   +S   ++GT    
Sbjct: 260 SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYN 319

Query: 347 ----------------------------GDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
                                        D    N L+AAY+     E    F + ++ K
Sbjct: 320 SLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK 379

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GI P   T+  +   Y K G+ +K L  F++   S    VP+     A    L ++  ++
Sbjct: 380 GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKES--GCVPNVCTYNAILGMLGKKSRLE 437

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
               +L  +R+ G     + +N++L      G
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKG 469


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELK 202
           + +LH+Y +  K   A  + EKM + G     + YN ML++Y   G+  +K+  +L E++
Sbjct: 213 TTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMR 272

Query: 203 KNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            N    D  T +  ++AC  +   + A K F  LK         +Y++L  ++ K  +  
Sbjct: 273 SNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYS 332

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A + LKEMEK  C  + V Y+ L++ Y   G+ +E       M+      N   YT VI
Sbjct: 333 EALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392

Query: 322 SSLVKLGEFEKAENIYDEW--------------------------ESISGTGDPR----V 351
           ++  K G+ +KA + + +                           E I    D R     
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCA 452

Query: 352 P-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
           P     N +LA   N+   +     +  + + G +P   T+  L   Y + G    V++ 
Sbjct: 453 PNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKM 512

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           +++ I +   + P      A  N L  +GD + AE +++ +++ G    E  Y+ +L  Y
Sbjct: 513 YEEMIKA--GFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCY 570

Query: 466 AKAG 469
           AK G
Sbjct: 571 AKGG 574



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 162/388 (41%), Gaps = 43/388 (11%)

Query: 123 LSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LP 177
           L  A  FF  L  +  + G  T ++LL  + +    +EA +++++M +     CP   + 
Sbjct: 296 LDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN---NCPPDLVT 352

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y+  G  ++    +  + +K   P+ +TY   + A      ++ A   F ++K
Sbjct: 353 YNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMK 412

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           ++   P+  +Y+ +  +  K    E+    L +M    C  N V ++++L++  N G   
Sbjct: 413 ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHK 472

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
            V R++++M S   + N   +  +I +  + G       +Y+E      T      N LL
Sbjct: 473 YVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALL 532

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEK----------- 402
            A   R   E AES    + +KG KP  T++ L+   Y K G    +EK           
Sbjct: 533 NALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIF 592

Query: 403 ---------VLECFKKA--IGSVRK--------WVPDHRLITAAYNKLEEQGDIDGAEHL 443
                    VL  FK+   +G  R         + PD  L  +  +   +    D A  +
Sbjct: 593 PSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM 652

Query: 444 LVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           L  +R +G       YNSL+  YA+ G+
Sbjct: 653 LRLIRESGLQPDLVTYNSLMDMYARGGE 680



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 1/266 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT +AL+ +Y +     +   + E+M + GF  C   YN +LN     G  +    ++ +
Sbjct: 491 DTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILD 550

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K K   P+  +Y+L L   A   +    EK   E+    I P WI   TL     K   
Sbjct: 551 MKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRA 610

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
                   +E  K   + + V ++S+LS++      D    + + +     + +   Y  
Sbjct: 611 LMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNS 670

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    + GE  K E I    +   G  D    N ++  +  +  ++ A    + +   G
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLE 405
           I+PC  T+     GY  KG   +V E
Sbjct: 731 IRPCIVTYNTFVAGYSGKGMFSEVEE 756



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 1/157 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML+++  N   D+  +ML+ ++++   PD+VTYN  +   A   +    E+    ++
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K+   PD +SY+T+   + +  L ++A  TL EM     R   V Y++ ++ Y+  G   
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFS 752

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           EV  +   M+    + N+  Y  V+    K  ++++A
Sbjct: 753 EVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEA 789



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 129/332 (38%), Gaps = 67/332 (20%)

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +LNLY  N ++D   Q+++              L +     ++    A +   E+   + 
Sbjct: 162 ILNLYSRNEKIDN--QLVE--------------LMVRILGRESQHSVALRLLDEISVEEY 205

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             D  +++T+   Y ++   E+A T  ++M K       V Y+ +L +Y  MG      R
Sbjct: 206 SLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMG------R 259

Query: 301 IWKKMMSLFAKMNDA-----EYTC--VISSLVKLGEFEKAENIYDEWES---ISGT---- 346
            W K++ L  +M        E+TC  VIS+  + G  ++A   +   +S   ++GT    
Sbjct: 260 SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYN 319

Query: 347 ----------------------------GDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
                                        D    N L+AAY+     E    F + ++ K
Sbjct: 320 SLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK 379

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GI P   T+  +   Y K G+ +K L  F++   S    VP+     A    L ++  ++
Sbjct: 380 GIMPNAITYTTVINAYGKAGKEDKALSFFRQMKES--GCVPNVCTYNAILGMLGKKSRLE 437

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
               +L  +R+ G     + +N++L      G
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKG 469


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 11/337 (3%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-- 201
           ++L+    +N +   A+ L E M         + YN +L+     G+L++   + QE+  
Sbjct: 118 NSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLD 177

Query: 202 ------KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
                     SP+V+TY++ +      N    A +    +K     PD I+Y+ L     
Sbjct: 178 RRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC 237

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K      A   L+EM    C  N V Y+SLL          + L + + M       N  
Sbjct: 238 KESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVV 297

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I  L K+G  + A  +  +     GT D  + N+L+      +Q++ + +   R 
Sbjct: 298 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 357

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           V+ GIKP   T+  + +G  +  ++++   C        R   PD  L +   + L + G
Sbjct: 358 VSGGIKPDVVTYSSVIYGLCRSNRLDEA--CRLLLYVKSRGCPPDVILYSTLIDGLCKAG 415

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +D A  L   +   G  +  + Y++L+    KAG++
Sbjct: 416 KVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 10/337 (2%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + R +S A     ++  +   P+  T   L+    +  +  +A A++  M + G    
Sbjct: 271 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN ++N      Q+D+   +L+  +     PDVVTY+  +      N  + A +  L
Sbjct: 331 LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL 390

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K     PD I YSTL     K    ++A    + M    C  + V YS+L+      G
Sbjct: 391 YVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAG 450

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             DE   +  +M+ +    +   Y  +I  L  L   ++A  + +E E  +        N
Sbjct: 451 RVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYN 510

Query: 354 ILLAAYINRNQLEMA----ESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFK 408
           IL+       +++ A    E    R V  G     T  +  L  G  K G++ + L+ F+
Sbjct: 511 ILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQ 570

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           + I +    +PDH   +     L++  D+    HL++
Sbjct: 571 EMIDN--GVIPDHITYSILLEGLKKSKDLHELRHLVL 605



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 24/338 (7%)

Query: 123 LSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A+  F+ +  K   P+   CS L+    + K+S +A      M   G +   + Y  
Sbjct: 25  IDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTA 84

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L+      +LD+   +L E++ +   P+VVTYN  +      N+ + A++ F  +K  +
Sbjct: 85  LLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVE 144

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-------TCRKNRVAYSSLLSLYTNM 292
             P  ++Y+TL     +    E+A    +EM  R        C  N + YS L+      
Sbjct: 145 CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKA 204

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-V 351
               + + + + M +     +   YT ++  L K  +   A      WE +    D   V
Sbjct: 205 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAA------WEVLREMLDAGCV 258

Query: 352 PNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
           PN+     LL       ++  A +    +  +G  P   T+  L  G  K G+++     
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
               I   +   PD  +     N L +   +D +  LL
Sbjct: 319 LADMID--KGGTPDLMIYNMLINGLCKADQVDESIALL 354



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 14/262 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  +L  +   G++D+  +   E++ KN  P+V   ++ +           A + F  ++
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQ 71

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
            + I  D + Y+ L S   K +  ++A   L EM    C  N V Y+SL+         D
Sbjct: 72  GSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPD 131

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRV-PN- 353
               +++ M S+    +   Y  ++  L + G+ E+A  ++ E  +  S   D R  PN 
Sbjct: 132 RAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNV 191

Query: 354 ----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               +L+      N++  A      +  +G  P   T+ +L  G  K+ ++    E  ++
Sbjct: 192 ITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 251

Query: 410 AIGSVRKWVPDHRLITAAYNKL 431
            + +    VP+  L+T  YN L
Sbjct: 252 MLDA--GCVPN--LVT--YNSL 267



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 10/270 (3%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PDV TY   L       + + A++ F E++   + P+    S L     K +    A   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            + M+      + V Y++LLS        D+ L I  +M     + N   Y  +I  L K
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-------G 379
             E ++A+ +++  +S+  +      N LL       +LE A + +  ++ +        
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
             P   T+ +L  G  K  ++ + +E  +      R   PD    T   + L ++  +  
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESM--KARGCSPDVITYTILVDGLCKESKVAA 244

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
           A  +L  + +AG V   + YNSLL    +A
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 186/441 (42%), Gaps = 57/441 (12%)

Query: 114 LDLISKI---RGLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            D+I K+   +G++  A   F+N+    R P   +C++LL + VQN ++ +A  + E+M 
Sbjct: 189 FDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMI 248

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKE 226
             G L     Y  M+N Y   G++D+    ++E++++   P+VVTYN  +    S  D  
Sbjct: 249 ALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVC 308

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K    + +  I  +  +Y+ L   Y K    E+A   +  M ++    +   Y  L+
Sbjct: 309 GAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLI 368

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG------------------ 328
             Y   G  D+ LRI   M+ +  KMN      +I+   KLG                  
Sbjct: 369 HAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428

Query: 329 -----------------EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                            +F KA  + DE  +          N LL    +   +E A   
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNK 430
           +N +  +G+ P   T+  L   + K G  ++ +  +K A+     K +  +  +   + K
Sbjct: 489 WNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCK 548

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQ-KDNVQMDA 488
           +E+   +  A+ + + ++  G    EI Y +L+  Y K G +    VE ++ KD  + D 
Sbjct: 549 MEK---LVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNL----VEALKLKDMSERDG 601

Query: 489 ETQKVLKITSEMPVSEVSSIF 509
            +      ++EM  S ++ +F
Sbjct: 602 ISS-----STEMYNSLITGVF 617



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 127/337 (37%), Gaps = 38/337 (11%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
             L+H+Y    +  +A  + + M + G     +  N ++N Y   G ++K  ++L  +K 
Sbjct: 365 GVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKD 424

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N  PD   YN  L     Q D   A K   E+    ++   ++Y+TL      +   E 
Sbjct: 425 WNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEH 484

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M KR    N V Y +LL  +  +G  D  + IWK  +S     +   Y  +I 
Sbjct: 485 ALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMIC 544

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN---------------RNQLEM 367
              K+ +  +A+ I+ + + +    D      L+  Y                 R+ +  
Sbjct: 545 GFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISS 604

Query: 368 AESFYNRLVT--------------------KGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +   YN L+T                    + + P   T+  L  G+  KG M+K    +
Sbjct: 605 STEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAY 664

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            K I   +   P+  + +   + L   G ID A  +L
Sbjct: 665 FKMID--KGIAPNIIIGSKIVSSLYRHGKIDEANLIL 699



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 41/335 (12%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     +L  + +   +  A  + + M +CG +      N +L+  + NG+  K      
Sbjct: 186 PTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKA----- 240

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
                    ++ Y   +A                      I PD  SY+ + + Y K   
Sbjct: 241 ---------LLVYEQMIA--------------------LGILPDIFSYTIMVNAYCKEGR 271

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A   +KEME+  C  N V Y+SL+  Y ++G      ++   M       N   YT 
Sbjct: 272 VDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTL 331

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    K G+ E+AE +       +   D  V  +L+ AY    +++ A    + ++  G
Sbjct: 332 LIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVG 391

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYNKLEEQGDI 437
           +K        L  GY K G + K  E     + S++ W   PD        +   +Q D 
Sbjct: 392 LKMNTVICNSLINGYCKLGHVNKAAE----VLVSMKDWNLKPDSYGYNTLLDGFCKQEDF 447

Query: 438 DGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             A  L   + N G + +   YN+LL+     G +
Sbjct: 448 IKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHV 482



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 124/327 (37%), Gaps = 38/327 (11%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
             K+  L  A+  F  + +    PD  T   L+  Y +     EA  L +     G    
Sbjct: 546 FCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSS 605

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              YN ++     + +L K+  +L E+K +  SP+VVTY   +A    +   + A  A+ 
Sbjct: 606 TEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYF 665

Query: 234 ELKKTKIDPDWISYS-TLTSLYIKMEL--------------PEKAATTLKEMEKRTCR-- 276
           ++    I P+ I  S  ++SLY   ++              P  A     E+ K   R  
Sbjct: 666 KMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHL 725

Query: 277 ------------------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
                              N + Y+  ++        D+V RI   ++      ++  Y 
Sbjct: 726 ETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYC 785

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I +   +G+  +A  + D+  +     +  V N L+        L+ A   +N+L  K
Sbjct: 786 SLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARK 845

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLE 405
           G+ P   T+  L  GY K G+  + LE
Sbjct: 846 GLSPTVVTYNTLIDGYCKGGRTTEALE 872



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + K + +        +L  K   PD  T  +L+H+     K  EA  L + M 
Sbjct: 749 YNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMI 808

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN ++N    +G LD+  ++  +L +K  SP VVTYN  +          
Sbjct: 809 NAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTT 868

Query: 227 TAEKAFLELKKTKIDPDWISYSTLT-SLYIKMELPEKAATTLKEMEK 272
            A +   ++++  I P  I+YSTL   LY++ +  E++   L EM K
Sbjct: 869 EALELKDKMREEGICPSSITYSTLIHGLYMEGK-SEQSVGLLNEMMK 914



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 13/289 (4%)

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           N YI++   D++  + +E   + SP V  +++ L   A +   + A   F  + K    P
Sbjct: 164 NNYIASAVWDELVSVYREF--SFSPTV--FDMILKVFAEKGMTKFALCVFDNMGKCGRVP 219

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              S ++L S  ++     KA    ++M       +  +Y+ +++ Y   G  DE     
Sbjct: 220 SLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFV 279

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M     + N   Y  +I   V LG+   A+ +           + R   +L+  Y  R
Sbjct: 280 KEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKR 339

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA---IGSVRKWVP 419
            Q+E AE     ++ K +      + +L   Y   G+++  L   + A   +G     V 
Sbjct: 340 GQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALR-IRDAMLKVGLKMNTVI 398

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
            + LI   Y KL   G ++ A  +LV++++      +  YN+LL  + K
Sbjct: 399 CNSLIN-GYCKL---GHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCK 443


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 206/475 (43%), Gaps = 22/475 (4%)

Query: 5   SLGATLAAARVFSTK-AAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWK 63
           SLG      +  ST+  +K++ LG  +   G   +  L   +  ++ +   + +     +
Sbjct: 19  SLGTDFCGRK--STRLVSKLSHLGRPSSAPGKPIKPVLSSAVKHMIKSPSPSLMPALLDQ 76

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
              H +   +L  IVREL    +++  ++  +WM LQ +++  S    V   +IS +  L
Sbjct: 77  VSAHLLGPDDLPFIVRELGHSGQWEKVVKSFDWMVLQQNLR--SQWDKVTSTIISSLGRL 134

Query: 124 SS---AENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--- 175
                A+  F+       G +    S+L+ +Y ++ K A+A  + E M     + C    
Sbjct: 135 GRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK----VVCKPNL 190

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +++     G      ++ +E L++  SPD +T+N  ++A    N  E  ++ F E
Sbjct: 191 VVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAE 250

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMG 293
           +++  I  D ++Y+TL + Y +       A  ++ M K +    + + YS+++  Y  +G
Sbjct: 251 MEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLG 310

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E + ++++M +   + +   Y  ++    +LG F++A +I    E      D    N
Sbjct: 311 LAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYN 370

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            LL +Y  + +   A S    +  +G  P   T+  L   Y K G     +  F+    +
Sbjct: 371 ALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKA 430

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
             +  PD  L +   +   + G  D A  LL  + + G     I YNSLL  Y +
Sbjct: 431 GLQ--PDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGR 483



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 44/240 (18%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALL SY +  K  EA +L+E+M + G     L Y+ +++ Y  +G       + Q++
Sbjct: 368 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 427

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY------ 254
           KK    PDVV Y+  +  C      + A     E+    I P+ I+Y++L   Y      
Sbjct: 428 KKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLM 487

Query: 255 IKMELPE-----------------------------------KAATTLKEMEKRTCRKNR 279
           ++   P+                                    AA   +EM K   + N 
Sbjct: 488 VRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNV 547

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V +SS+L+  ++    ++   + + M     ++    +  ++   +++  +  AE +++E
Sbjct: 548 VTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGVTHGLLMGFRIRV--WRDAETLFNE 605


>gi|297746078|emb|CBI16134.3| unnamed protein product [Vitis vinifera]
          Length = 453

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 119/240 (49%), Gaps = 1/240 (0%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
             +  + W  EG  +H+  +   +  LRKLK  K ALEV EW+  +   +    DY+  L
Sbjct: 73  VGLAFQSWMGEGCPIHRGHIFHAINRLRKLKFNKRALEVMEWVVRERPYRPKELDYSYLL 132

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           +  +K+ G+S  E  F ++P + +     + L+ + +       + A M+KM E G    
Sbjct: 133 EFTTKLHGISQGEKLFSHVPLEFQNELLYNNLVIACLDKGVIRLSLAYMKKMRELGHPIS 192

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
            L +N ++ L+ S  +   +P++L ++K +  +  V TYN+ +   A++++ E   K F 
Sbjct: 193 YLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEANEHNIEGLVKVFG 252

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+K+ +++P+ +SY  L + +   +L   A   ++ +EK     N      L+ LY  +G
Sbjct: 253 EMKQQQVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNWSTLDVLIILYGYLG 312



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 123/307 (40%), Gaps = 34/307 (11%)

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK---AATTLK 268
           YN  + AC    DK     +   +KK +     ISY     L I    P +       L 
Sbjct: 161 YNNLVIACL---DKGVIRLSLAYMKKMRELGHPISYLVFNRLIILHSSPHRRKIIPRILT 217

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           +M+     ++   Y+ L+ +  N    + +++++ +M     + N+  Y C++++   + 
Sbjct: 218 QMKADKVARHVSTYNILMKIEANEHNIEGLVKVFGEMKQQQVEPNEVSY-CLLATAHAVA 276

Query: 329 EFEKAENIYDEWESISGTGDP-RVPNILLAAY-----------INRNQLEMAESFYNRLV 376
           +       Y E    S TG+     ++L+  Y           + RN+++      NR +
Sbjct: 277 KLYTVAEAYVEAVEKSITGNNWSTLDVLIILYGYLGKPTDLEPLVRNKVKKRVEI-NRAI 335

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPDHRLITAAYNKLEEQ 434
                  + TWE L           K LE  K    S  +RK +P      +      E 
Sbjct: 336 QFNDICLFQTWEAL-----------KTLELGKGLTISTRIRKSIPWLETTLSIVEIFSEN 384

Query: 435 GDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKV 493
           GD++ AE L   L+ A +   T +YN+L++ Y KA      ++ RM     + DAET  +
Sbjct: 385 GDVENAEKLFEELKTANYTRYTFVYNTLIKAYVKAKVYDPNLLRRMILGGARPDAETYSL 444

Query: 494 LKITSEM 500
           +K+  + 
Sbjct: 445 MKLAEQF 451


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 4/280 (1%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLW 215
           EA  L  +M   G       YN +++ +   GQ     ++L E+  K++  PDV T+N+ 
Sbjct: 214 EACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNIL 273

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           + A         A   F  + K  ++PD +S + L + +       +A      M +R  
Sbjct: 274 VDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGK 333

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             N ++YS+L++ Y  +   DE LR+  +M       +   Y C++  L K G      +
Sbjct: 334 LPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWD 393

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           + +   +     D    N+LL  Y+ R  L+ A + +  +V  GI P   T+ +L  G  
Sbjct: 394 LVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLC 453

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           K G+M+   E F+  + SV+   P+ R      N L  +G
Sbjct: 454 KGGRMKAAKEIFQ--LLSVKGCRPNIRTYNIMINGLRREG 491



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 124/268 (46%), Gaps = 5/268 (1%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124
           +G  +  +  N ++       +++ A+ +   M ++ D++     + + +D + K+  ++
Sbjct: 225 KGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVA 284

Query: 125 SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
            A N F  +  +   PD  +C+AL++ +      +EA+ + ++M E G L   + Y+ ++
Sbjct: 285 EARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLI 344

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKI 240
           N Y     +D+  ++L E+ ++N  PD VTYN  L    S++ +   E   +E ++ +  
Sbjct: 345 NGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDG-LSKSGRVLYEWDLVEAMRASGQ 403

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            PD I+Y+ L   Y+K E  +KA    + +       N   Y+ L+      G       
Sbjct: 404 APDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKE 463

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           I++ +     + N   Y  +I+ L + G
Sbjct: 464 IFQLLSVKGCRPNIRTYNIMINGLRREG 491



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 10/258 (3%)

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D + Y TL +   KM     A   L++MEK   R N + Y+ ++      G   E   + 
Sbjct: 160 DEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLC 219

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW---ESISGTGDPRVPNILLAAY 359
            +M+     ++   Y  +I      G+F+ A  + +E    E +    D    NIL+ A 
Sbjct: 220 SEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVR--PDVYTFNILVDAL 277

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                +  A + +  ++ +G++P   +   L  G+  +G M +  E F + +   R  +P
Sbjct: 278 CKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVE--RGKLP 335

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPL--IIV 476
           +    +   N   +   +D A  LL  +     V  T  YN LL   +K+G++     +V
Sbjct: 336 NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLV 395

Query: 477 ERMQKDNVQMDAETQKVL 494
           E M+      D  T  VL
Sbjct: 396 EAMRASGQAPDLITYNVL 413


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 125/296 (42%), Gaps = 13/296 (4%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLE 234
           P     N  +S   LD+  ++ Q L     PD  V +YN+ L         E A + F E
Sbjct: 233 PSPEACNAVLSRLPLDEAIELFQGL-----PDKNVCSYNILLKVLCGAGRVEDARQLFDE 287

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +      PD ++Y  L   Y  +   E A   L +M  R    N   Y+S+++L  + G 
Sbjct: 288 MASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGR 344

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             + L + + M+     +++A YT V+S     G+   A   +DE +      D      
Sbjct: 345 VSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTT 404

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+       +L+ AE     ++ + +     T+ +L  GY K+G+M +  +     +   
Sbjct: 405 LINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQ-- 462

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           R   P+    TA  + L +QGD+  A  LL  + N G  ++   YNSL+    KAG
Sbjct: 463 RGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 518



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 5/268 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           + +L  +        A    ++M   G     + Y  ++N     G+L +  ++LQE L 
Sbjct: 368 TTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLA 427

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +    D VTY + +     +     A +    + +  + P+ ++Y+ L+    K    + 
Sbjct: 428 RRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQA 487

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  +    N   Y+SL++     GY D+ +R    M +   K +   YT +I 
Sbjct: 488 ANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLID 547

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGI 380
           +L K GE ++A ++  E   +     P +   N+L+  +    ++E  +     ++ K I
Sbjct: 548 ALCKSGELDRAHDLLQEM--LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNI 605

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFK 408
            P  TT+  L   Y     M+   E +K
Sbjct: 606 HPNATTYNSLMKQYCIGNNMKSTTEIYK 633



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 4/232 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  +L+ + + G L    +   E+ +K  + D VTY   +       + + AEK   E+ 
Sbjct: 367 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEML 426

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
             ++D D ++Y+ L   Y K     +A      M +R    N V Y++L       G   
Sbjct: 427 ARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQ 486

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
               +  +M +   ++N   Y  +I+ L K G  ++A     + ++     D      L+
Sbjct: 487 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLI 546

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLE 405
            A     +L+ A      ++  GIKP   T+ +L  G+   G++E   K+LE
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLE 598



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 1/224 (0%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           +A   M  M   G       Y  +++    +G+LD+   +LQE+  N   P +VTYN+ +
Sbjct: 522 QAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLM 581

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                    E  +K    + +  I P+  +Y++L   Y      +      K M  R   
Sbjct: 582 NGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE 641

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N   Y+ L+  +       E      +M+    ++  + Y+ +I  L K  +F +A  +
Sbjct: 642 PNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKL 701

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           + +      T +P V N  +    N + LE   +  + LV   I
Sbjct: 702 FHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASI 745



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 126/349 (36%), Gaps = 45/349 (12%)

Query: 50  YAKRSAAITMRKWKEE----GHTVHKYELNRIVRELRKLKRYKHALEVC-EWMELQYDIK 104
           +  +   ++ R+W +E    G          ++  L +    K A +V  E +  + D+ 
Sbjct: 374 FCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVD 433

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEAL 162
            V+  Y V +D   K   ++ A      +  +   P+  T +AL     +      A  L
Sbjct: 434 EVT--YTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANEL 491

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
           + +MS  G       YN ++N     G LD+  + + ++      PDV TY   + A   
Sbjct: 492 LHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCK 551

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
             + + A     E+    I P  ++Y+ L + +      E     L+ M ++    N   
Sbjct: 552 SGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATT 611

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y+SL+  Y           I+K M S                       E  EN Y    
Sbjct: 612 YNSLMKQYCIGNNMKSTTEIYKGMCSR--------------------NVEPNENTY---- 647

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
                      NIL+  +     ++ A+ F+N ++ KG +   +++  L
Sbjct: 648 -----------NILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSAL 685


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 190/430 (44%), Gaps = 27/430 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ---YDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           + +R+   + K K+Y   L +C+ MEL+   +++  +S    + ++   + R L  A + 
Sbjct: 90  DFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS----IMINCFCRCRKLCLAFSA 145

Query: 130 FENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      P+T   S L++      + +EA  L+++M E G     +  N ++N L +
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           S  + + +  + + ++    P+ VTY   L           A +   ++++  I  D + 
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS +     K    + A     EME +    N + Y+ L+  + N G  D+  ++ + M+
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I S VK G+  +AE ++ E        D      L+  +   N L+
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A    + +V+KG  P   T+ +L  GY K  +++  LE F+K   S+R  V D    T 
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM--SLRGVVAD----TV 439

Query: 427 AYNKL----EEQGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVE 477
            YN L     E G ++ A+ L   +V+ +   ++ T  Y  LL      G+    L I E
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT--YKILLDGLCDNGESEKALEIFE 497

Query: 478 RMQKDNVQMD 487
           +++K  +++D
Sbjct: 498 KIEKSKMELD 507



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 146/336 (43%), Gaps = 6/336 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L++    + K AEA  L++KM E G     + Y  +LN+   +GQ     ++
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+++ ++N   D V Y++ +         + A   F E++   I  + I+Y+ L   +  
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               +  A  L++M KR    N V +S L+  +   G   E   + K+M+      +   
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT +I    K    +KA  + D   S     + R  NIL+  Y   N+++     + ++ 
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G+     T+  L  G+ + G++    E F++ +   RK  P+        + L + G+
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS--RKVPPNIVTYKILLDGLCDNGE 488

Query: 437 IDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
            + A  +   + ++   +   IYN ++     A K+
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 155/359 (43%), Gaps = 10/359 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +L+   ++ ++A A  L+ KM E       + Y+ +++    +G LD    +  E+
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K  + +++TYN+ +    +    +   K   ++ K KI+P+ +++S L   ++K    
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 349

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    KEM  R    + + Y+SL+  +    + D+  ++   M+S     N   +  +
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K    +    ++ +        D    N L+  +    +L +A+  +  +V++ +
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+++L  G    G+ EK LE F+K   S  K   D  +     + +     +D A
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNASKVDDA 527

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL----IIVERMQKDNVQMDAETQKVL 494
             L  +L   G     + YN ++    K G  PL    ++  +M++D    D  T  +L
Sbjct: 528 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKG--PLSEAELLFRKMEEDGHAPDGWTYNIL 584



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 36/255 (14%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ S+V+  K  EAE L ++M   G     + Y  +++ +     LDK  QM+  +
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P++ T+N+ +      N  +   + F ++    +  D ++Y+TL   + ++   
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
             A    +EM  R    N V Y  LL    + G  ++ L I++K+               
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514

Query: 306 ---MSLFAKMNDA-----------------EYTCVISSLVKLGEFEKAENIYDEWESISG 345
              M   +K++DA                  Y  +I  L K G   +AE ++ + E    
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574

Query: 346 TGDPRVPNILLAAYI 360
             D    NIL+ A++
Sbjct: 575 APDGWTYNILIRAHL 589


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 191/456 (41%), Gaps = 75/456 (16%)

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLP---------------DKMR--GPD----TCSA 145
           +GD    L+L+ +++    A + F + P               D +R  G D    T +A
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTA 62

Query: 146 LLHSYVQNKKSAEAEALME-----------------------------------KMSECG 170
           L+ ++ + KK  EA  L+E                                   KM E G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAA-CASQNDKETA 228
           F    + +N +++ +   G +D   ++L   + K   P+VVTY+  +   C SQ   E A
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLE-A 181

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
           ++   E+K + + PD  +YS L     K +  E+A   L+ M    C  + V YSS++  
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G   E  +  ++M       +   Y  VI  L KLG+  +A+ I D+ +  SG   
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE-SGDVL 300

Query: 349 PRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---V 403
           P V   + ++      + L  A+   +R+   G  P   T+  +  G  K G++E+   +
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 360

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
           L+  K+A        P+    T   + L +   +D AE ++  +RNAG     + YN+++
Sbjct: 361 LQGMKRA-----GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMV 415

Query: 463 RTYAKAGKM--PLIIVERMQKDNVQM--DAETQKVL 494
                +G++     +V+RM+    +   DA T + +
Sbjct: 416 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 451



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 158/397 (39%), Gaps = 19/397 (4%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL---- 114
           + + +E G   +    N +V  L KL     A +V +        K++ G +A ++    
Sbjct: 80  LEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK--------KMIEGGFAPNVMTFN 131

Query: 115 ---DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
              D   K   +  A      +  K   P+  T SAL+    +++K  EA+ ++E+M   
Sbjct: 132 SLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKAS 191

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
           G       Y+ +++      ++++  QML+ +     +PDVV Y+  + A         A
Sbjct: 192 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 251

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSLLS 287
           +K   E++K +  PD ++Y+T+     K+    +A   L +M E      + V YS++++
Sbjct: 252 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVIN 311

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                    E  ++  +M       +   YT +I  L K G  E+AE +    +      
Sbjct: 312 GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAP 371

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +      L++      +++ AE     +   G  P   T+  +  G    G++++  +  
Sbjct: 372 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 431

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           ++      +  PD        N L     +  AE LL
Sbjct: 432 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLL 468



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 130/292 (44%), Gaps = 13/292 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + + K  G T   +  + ++  L K  + + A    E M  +      + D  V+  +I
Sbjct: 184 VLEEMKASGVTPDAFTYSALIHGLCKADKIEEA----EQMLRRMAGSGCTPDVVVYSSII 239

Query: 118 ---SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG-F 171
               K   L  A+   + +  + + PD  T + ++    +  K AEA+ ++++M E G  
Sbjct: 240 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
           L   + Y+ ++N    +  L +  ++L  + K   +PDVVTY   +         E AE 
Sbjct: 300 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 359

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +K+    P+ ++Y+TL S   K    ++A   ++EM    C  N V Y+++++   
Sbjct: 360 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 419

Query: 291 NMGYKDEVLRIWKKMMSLFAKM--NDAEYTCVISSLVKLGEFEKAENIYDEW 340
             G   E  ++ ++M    A+   + A Y  ++++L+     ++AE + ++ 
Sbjct: 420 VSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 145/333 (43%), Gaps = 7/333 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL 201
           S +L +   N  S  A  L++ M++ G    P  + Y+ +++ + + G+  K   +  E+
Sbjct: 232 SIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEM 291

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   PDVVTYNL + A       + AE    ++      PD ++YS +   Y  +   
Sbjct: 292 TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRL 351

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++AA   +EM+KR    N V  +S L+     G   E    +  M +   K +   Y  +
Sbjct: 352 KEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTL 411

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +      G F     +++  +S     +  V  IL+ AY  R  ++ A   +  +  +G+
Sbjct: 412 LHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGV 471

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  +   + + G++   +E F + +   R   P+  + ++        G +  A
Sbjct: 472 SPDVVTYSTVISTFSRMGRLTDAMEKFNQMV--ARGIQPNTAVYSSIIQGFCMHGGLVKA 529

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           + L+  + N G    +I  ++S++ +  K G++
Sbjct: 530 KELVSEMINKGIPRPDIVFFSSVINSLCKDGRV 562



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 135/335 (40%), Gaps = 7/335 (2%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + LL       ++ EA   L+ +MSE G +   + Y+ +L     N    +   +LQ 
Sbjct: 194 TANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQM 253

Query: 201 LKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           + K     SPDVV Y+  +    ++ +   A   F E+ +  + PD ++Y+ +     K 
Sbjct: 254 MAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKA 313

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA   L++M     + + V YS ++  Y  +G   E  +++++M       N    
Sbjct: 314 RAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC 373

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
              ++SL K G  ++A   +D   +     D      LL  Y +          +N + +
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKS 433

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            GI      + +L   Y K+G ++  +  F +     +   PD    +   +     G +
Sbjct: 434 NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEM--QQQGVSPDVVTYSTVISTFSRMGRL 491

Query: 438 -DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            D  E     +      +T +Y+S+++ +   G +
Sbjct: 492 TDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGL 526



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 165/414 (39%), Gaps = 85/414 (20%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A + F  +  +   PD  T + ++ +  + +   +AE ++ +M+  G     + Y+ M++
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIH 343

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKID 241
            Y + G+L +  +M +E+KK    P++VT N +LA+ C     KE AE  F  +      
Sbjct: 344 GYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAE-FFDSMTAKGHK 402

Query: 242 PDWISYST-----------------------------------LTSLYIKMELPEKAATT 266
           PD  SY T                                   L   Y K  + + A   
Sbjct: 403 PDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLI 462

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             EM+++    + V YS+++S ++ MG   + +  + +M++   + N A Y+ +I     
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCM 522

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMAESFYNRLVTKGIKP 382
            G   KA+ +  E  +    G PR   +  ++ IN      ++  A   ++     G +P
Sbjct: 523 HGGLVKAKELVSEMIN---KGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERP 579

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L  GY   G+M+K                           K+ +  ++ G E 
Sbjct: 580 GVITFNSLIDGYCLVGKMDKAF-------------------------KILDAMEVVGVEP 614

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            +VT           YN+LL  Y K G++   L +   MQ+  V+ +  T  ++
Sbjct: 615 DIVT-----------YNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIM 657



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/343 (18%), Positives = 144/343 (41%), Gaps = 14/343 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +   S++  L+ A   F  +  +   P+T   S+++  +  +    +A+ L+ +M 
Sbjct: 478 YSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMI 537

Query: 168 ECGFLKCPLP----YNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACAS 221
             G    P P    ++ ++N    +G++     +  +L  +    P V+T+N  +     
Sbjct: 538 NKGI---PRPDIVFFSSVINSLCKDGRVMDAHDIF-DLATDIGERPGVITFNSLIDGYCL 593

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A K    ++   ++PD ++Y+TL   Y K        T  +EM+++  + N V 
Sbjct: 594 VGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVT 653

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y  +L+     G      + + +M+     +  + Y  ++  L +    ++A  ++ +  
Sbjct: 654 YGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLG 713

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +++      + N ++ A     + E A+  +  +   G+ P  +T+ ++    LK G +E
Sbjct: 714 TMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVE 773

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
                F     S    VP  RL+      L E+G+I  A + L
Sbjct: 774 DANNMFSSMEKS--GIVPGSRLLNRIIRMLLEKGEIAKAGNYL 814


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 186/445 (41%), Gaps = 17/445 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +V      K +    ++CEW+      +   G Y + +D   K   +  AE  F  + + 
Sbjct: 74  VVVHFWNYKDWPRVTQMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEA 133

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
           +  P+  T   L++ Y       +AE L  +M + G+   PL  N  L++     +  + 
Sbjct: 134 LCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRA 193

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             + ++L+K    P++ TYN  +       +   AE  +  +++    P+  +++ L + 
Sbjct: 194 EALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNA 253

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L  +A     ++++   + +  AY++L+  Y+  G     L I++ M       +
Sbjct: 254 FARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD 313

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              +  +I++  + G +E AE I+   +S   + + +   +LL+AY    ++E AE   +
Sbjct: 314 TVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVS 373

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKL- 431
            +   G KP    +  L   Y   G+ E +     K + S  K   PD       YN L 
Sbjct: 374 AMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPD----IGTYNTLI 429

Query: 432 ---EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQ 485
               + G I  AE L   L     V     + +L+  YAK    +    I+++M +   +
Sbjct: 430 QVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCR 489

Query: 486 MDAETQKVLKITSEMP--VSEVSSI 508
            DA T +VL      P  V +V+ +
Sbjct: 490 ADAVTARVLFSACRSPEQVEQVTQL 514


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 160/358 (44%), Gaps = 4/358 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A + + +  E G    +     ++  L K      AL++   ME + +IK     Y++ +
Sbjct: 223 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVI 281

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + K      A + F  +  K    D  T S+L+     + K  +   ++ +M     +
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 341

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + ++ ++++++  G+L +  ++  E+  +  +PD +TYN  +     +N    A + 
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F  +     +PD ++YS L + Y K +  +      +E+  +    N + Y++L+  +  
Sbjct: 402 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 461

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +    ++++M+S     +   Y  ++  L   GE  KA  I+++ +    T    +
Sbjct: 462 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 521

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            NI++    N ++++ A S +  L  KG+KP   T+ ++  G  KKG + +    F+K
Sbjct: 522 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 579



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 183/424 (43%), Gaps = 27/424 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDYAVHLDLISKIRGLSSA 126
           + NR+   + + K+Y   L  C+ MEL       Y + ++   Y     L+     L  A
Sbjct: 101 DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRA 160

Query: 127 ENF-FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
               +E  PD +    T S L++ +    + +EA AL+++M E       +  + ++N  
Sbjct: 161 WKLGYE--PDTI----TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 214

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G++ +   ++  + +    PD VTY   L       +   A   F ++++  I    
Sbjct: 215 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 274

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           + YS +     K    + A +   EME +  + + V YSSL+    N G  D+  ++ ++
Sbjct: 275 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 334

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      +   ++ +I   VK G+  +A+ +Y+E  +     D    N L+  +   N 
Sbjct: 335 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 394

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           L  A   ++ +V+KG +P   T+ +L   Y K  +++  +  F++   S +  +P+    
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI--SSKGLIPN---- 448

Query: 425 TAAYNKLE----EQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVE 477
           T  YN L     + G ++ A+ L   + + G   S   Y  LL      G++   L I E
Sbjct: 449 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 508

Query: 478 RMQK 481
           +MQK
Sbjct: 509 KMQK 512



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 38/215 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L  A   F+ +  K   PD  T S L++SY + K+  +   L  ++S
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 441

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN ++  +  +G+L+   ++ QE+  +   P VVTY + L       +  
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 227 TAEKAFLELKKTK-----------------------------------IDPDWISYSTLT 251
            A + F +++K++                                   + PD ++Y+ + 
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 561

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
               K     +A    ++M++  C  +   Y+ L+
Sbjct: 562 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 8/314 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWM-ELQYDIKLVS-GDYAVHLDLISKIRGLSSAENFFENLP 134
           +++EL K    K A+E+ +W+  L+   +L S  D   +  +IS+           E + 
Sbjct: 241 LLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVA 300

Query: 135 D-KMRGPD----TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           + + RG D    T SAL++  ++  +   A+ + ++M E G     + YN ++++Y+   
Sbjct: 301 EMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRC 360

Query: 190 QLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           Q ++  ++L  L+K     +V TYN  ++AC      E A K + ++    + P   +Y+
Sbjct: 361 QWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYT 420

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L S Y K    EKA    ++M +R C +N + YSSL+S     G  +  L ++ KM   
Sbjct: 421 ALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKE 480

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             K N   +  +I++    G +EKA  ++++ ++     D      L+ AY    Q   A
Sbjct: 481 NCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRA 540

Query: 369 ESFYNRLVTKGIKP 382
              + ++ T+G  P
Sbjct: 541 LKAFEQMQTQGCHP 554



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 1/233 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+ ++N+ I   +LD    +  Q L++  SP++VTYN+ +     +   E A K    L+
Sbjct: 314 YSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLE 373

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  I  +  +Y+T+ S   K   PE+A    ++M     + +   Y++L+S Y   G  +
Sbjct: 374 KQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVE 433

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L I++ M+    + N   Y+ +IS+  K G +E A  ++ +    +   +    N L+
Sbjct: 434 KALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLI 493

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           AA  +    E A   + ++ T+G KP   T+  L   Y + GQ  + L+ F++
Sbjct: 494 AACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQ 546



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D  +Y+T+ S     +   +A   + EM  R    N   YS+L+++       D    ++
Sbjct: 275 DLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVY 334

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M+      N   Y  +I   VK  ++E+A  + D  E  +   + R  N +++A    
Sbjct: 335 KQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKS 394

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPD 420
            Q E A   Y +++  G+KP  TT+  L   Y KKGQ+EK LE F+  I  G  R  +  
Sbjct: 395 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITY 454

Query: 421 HRLITA 426
             LI+A
Sbjct: 455 SSLISA 460



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 4/165 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+ +Y +  +  +A  +   M   G  +  + Y+ +++     G+ +   ++  ++
Sbjct: 418 TYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKM 477

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+N  P+VVT+N  +AAC+     E A + F +++     PD I+Y  L + Y +    
Sbjct: 478 HKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQW 537

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIW 302
            +A    ++M+ + C  +   ++SL+ +    G    + + L++W
Sbjct: 538 RRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVLLAQSKALQLW 582


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 5/335 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SAL+ +Y ++    EA  + E M   G     + YN +++     G +  +V ++ +E+ 
Sbjct: 226 SALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEML 285

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +N   PD +TYN  LA C+     E A   F E+    ID D  +Y+TL     K    +
Sbjct: 286 RNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMD 345

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   + EM  +    N V YS++   Y   G  ++ L ++ +M  L   ++   Y  ++
Sbjct: 346 LAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLL 405

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   KLG FE A  +  E  S     D    N LL  Y  + +       +  +    + 
Sbjct: 406 SIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVF 465

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L   Y K    E+ +E F++   +  K   D  L +   N L + G +D A 
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLK--ADVVLYSELINALCKNGLVDSAV 523

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII 475
            LL  +   G   +   YNS++  + ++     ++
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLV 558



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 8/235 (3%)

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-EFEKAENIYDE 339
           A+S+L+S Y   GY DE +++++ M     K N   Y  VI +  K G EF++   I++E
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   D    N LLA        E A + +N ++ +GI     T+  L     K GQ
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQ 343

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-Y 458
           M+   E   +  G  +K +P+    +   +   + G ++ A +L   ++  G     + Y
Sbjct: 344 MDLAYEIMLEMPG--KKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 459 NSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           N+LL  YAK G+    L + + M    V+ D  T   L      +   +EV+ +F
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVF 456


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 197/462 (42%), Gaps = 58/462 (12%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           T+   +++G   + +  N ++  L ++ R   ALE+   ME    +K  +  Y V +D  
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFIDYY 443

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K     SA   FE +  K   P+   C+A L+S  +  +  EA+ +   + + G +   
Sbjct: 444 GKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDS 503

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN M+  Y   G++D+  ++L E+ +N   PDV+  N  +      +  + A K F+ 
Sbjct: 504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMR 563

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+ K+ P  ++Y+TL +   K    ++A    + M ++ C  N + +++L         
Sbjct: 564 MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK--- 620

Query: 295 KDEV---LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE-------------------- 331
            DEV   L++  KMM +    +   Y  +I  LVK G+ +                    
Sbjct: 621 NDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTL 680

Query: 332 --------KAENIYDEWESISG---TGDPRVPNI----LLAAYINRNQLEMAESFYNRLV 376
                   KA  I D ++ I+        +  N+    L+ + +    ++ A SF  RLV
Sbjct: 681 CTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLV 740

Query: 377 TKGIKPCYTTWELL------TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
             GI  C     +L      +  +        + E F K +G V+  +P + L+      
Sbjct: 741 ANGI--CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLG-VQPKLPTYNLLIGG--- 794

Query: 431 LEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
           L E   I+ A+ + + +++ G +     YN LL  Y K+GK+
Sbjct: 795 LLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 7/267 (2%)

Query: 207  PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
            P + TYNL +      +  E A+  FL++K T   PD  +Y+ L   Y K    ++    
Sbjct: 783  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842

Query: 267  LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--LFAKMNDAEYTCVISSL 324
             KEM    C  N + ++ ++S     G  D+ L ++  +MS   F+      Y  +I  L
Sbjct: 843  YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP-TACTYGPLIDGL 901

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
             K G   +A+ +++         +  + NIL+  +    + + A + + R+V +G++P  
Sbjct: 902  SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961

Query: 385  TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             T+ +L       G++++ L  FK+   S     PD        N L +   ++ A  L 
Sbjct: 962  KTYSVLVDCLCMVGRVDEGLHYFKELKES--GLNPDVVCYNLIINGLGKSHRLEEALVLF 1019

Query: 445  VTLRNAGHVSTEI--YNSLLRTYAKAG 469
              ++ +  ++ ++  YNSL+     AG
Sbjct: 1020 NEMKTSRGITPDLYTYNSLILNLGIAG 1046



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 97/500 (19%), Positives = 188/500 (37%), Gaps = 77/500 (15%)

Query: 46  LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ----- 100
           LS+    + A   +RK +E G  ++ Y  N ++  L K +    A+EV   M L+     
Sbjct: 163 LSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPS 222

Query: 101 --------------YDIKLVSG---------------DYAVHLDLISKIRGLSSAENFFE 131
                          DI  V G                + + + ++ +   ++ A    +
Sbjct: 223 LQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK 282

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            + D+  GPD  T + L+ +    +K   A+ + EKM         + Y  +L+ +  N 
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR 342

Query: 190 QLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
            LD V Q   E++K+   PDVVT+ + + A     +   A      ++   I P+  +Y+
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYN 402

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL    +++   + A      ME    +     Y   +  Y   G     L  ++KM + 
Sbjct: 403 TLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK 462

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N       + SL K G   +A+ I+   + I    D    N+++  Y    +++ A
Sbjct: 463 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522

Query: 369 ESFYNRLVTKG-----------------------------------IKPCYTTWELLTWG 393
               + ++  G                                   +KP   T+  L  G
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRL-ITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
             K G++++ +E F+   G V+K  P + +     ++ L +  ++  A  +L  + + G 
Sbjct: 583 LGKNGKIQEAIELFE---GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGC 639

Query: 453 VSTEI-YNSLLRTYAKAGKM 471
           V     YN+++    K G++
Sbjct: 640 VPDVFTYNTIIFGLVKNGQV 659



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 143/333 (42%), Gaps = 13/333 (3%)

Query: 79  RELRKLKRYKHALEVCEWMELQYDIKLVSG-DYAVHLDLISKIRGLSSAENFFENLPDKM 137
           R+L  +K++        W E++ D  +     + + +D + K      A +  + + D+ 
Sbjct: 342 RDLDSVKQF--------WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393

Query: 138 RGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
             P+  T + L+   ++  +  +A  L   M   G       Y   ++ Y  +G      
Sbjct: 394 ILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSAL 453

Query: 196 QMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +  +++K K  +P++V  N  L + A       A++ F  LK   + PD ++Y+ +   Y
Sbjct: 454 ETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K+   ++A   L EM +  C  + +  +SL++        DE  +++ +M  +  K   
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  +++ L K G+ ++A  +++         +    N L       +++ +A     +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           ++  G  P   T+  + +G +K GQ+++ + CF
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAM-CF 665



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 12/252 (4%)

Query: 236  KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K   + P   +Y+ L    ++ ++ E A     +++   C  +   Y+ LL  Y   G  
Sbjct: 777  KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836

Query: 296  DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---ISGTGDPRVP 352
            DE+  ++K+M +   + N   +  VIS LVK G  + A ++Y +  S    S T     P
Sbjct: 837  DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 896

Query: 353  NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
              L+       +L  A+  +  ++  G +P    + +L  G+ K G+ +     FK+ + 
Sbjct: 897  --LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK 954

Query: 413  -SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
              VR   PD +  +   + L   G +D   H    L+ +G +     YN ++    K+ +
Sbjct: 955  EGVR---PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHR 1011

Query: 471  M--PLIIVERMQ 480
            +   L++   M+
Sbjct: 1012 LEEALVLFNEMK 1023



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 151/367 (41%), Gaps = 13/367 (3%)

Query: 115  DLISKI---RGLSSAENFFENLPDKMRGPDTCSALL----HSYVQNKKSAEAEALMEKMS 167
            DLI  I    G+ +A +F E L       D  S L+    +S   N  S  A  L EK +
Sbjct: 718  DLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSG-ARTLFEKFT 776

Query: 168  ECGFLKCPLP-YNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDK 225
            +   ++  LP YN ++   +    ++    +  ++K     PDV TYN  L A       
Sbjct: 777  KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836

Query: 226  ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSS 284
            +   + + E+   + + + I+++ + S  +K    + A     + M  R        Y  
Sbjct: 837  DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 896

Query: 285  LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
            L+   +  G   E  ++++ M+    + N A Y  +I+   K GE + A  ++       
Sbjct: 897  LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956

Query: 345  GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
               D +  ++L+       +++    ++  L   G+ P    + L+  G  K  ++E+ L
Sbjct: 957  VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016

Query: 405  ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
              F + + + R   PD     +    L   G ++ A  +   ++ AG   +   +N+L+R
Sbjct: 1017 VLFNE-MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075

Query: 464  TYAKAGK 470
             Y+ +GK
Sbjct: 1076 GYSLSGK 1082



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 5/277 (1%)

Query: 140  PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
            PD  T + LL +Y ++ K  E   L ++MS        + +N +++  +  G +D    +
Sbjct: 818  PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877

Query: 198  LQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
              +L   ++ SP   TY   +   +       A++ F  +      P+   Y+ L + + 
Sbjct: 878  YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937

Query: 256  KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            K    + A    K M K   R +   YS L+     +G  DE L  +K++       +  
Sbjct: 938  KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997

Query: 316  EYTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  +I+ L K    E+A  +++E ++  G T D    N L+        +E A   YN 
Sbjct: 998  CYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNE 1057

Query: 375  LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            +   G++P   T+  L  GY   G+ E     ++  +
Sbjct: 1058 IQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 46/282 (16%)

Query: 120  IRGLSSAEN-------FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECG 170
            I GL  A N       +++ + D+   P  C+   L+    ++ +  EA+ L E M + G
Sbjct: 862  ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYG 921

Query: 171  FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
                   YN ++N +   G+ D    + + + K+   PD+ TY++ +         +   
Sbjct: 922  CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGL 981

Query: 230  KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME-KRTCRKNRVAYSSLLSL 288
              F ELK++ ++PD + Y+ + +   K    E+A     EM+  R    +   Y+SL+  
Sbjct: 982  HYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI-- 1039

Query: 289  YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
              N+G                           I+ +V     E+A  IY+E +      +
Sbjct: 1040 -LNLG---------------------------IAGMV-----EEAGKIYNEIQRAGLEPN 1066

Query: 349  PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
                N L+  Y    + E A + Y  +VT G  P   T+E L
Sbjct: 1067 VFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 77   IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            ++  L K  R   A ++ E M L Y  +     Y + ++   K     +A   F+ +  +
Sbjct: 897  LIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 955

Query: 137  MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
               PD  T S L+       +  E     +++ E G     + YN ++N    + +L++ 
Sbjct: 956  GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015

Query: 195  PQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              +  E+K  +  +PD+ TYN  +         E A K + E+++  ++P+  +++ L  
Sbjct: 1016 LVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075

Query: 253  LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             Y     PE A    + M       N   Y  L
Sbjct: 1076 GYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           AE+ F     +       +A++  Y ++ +  +A  L++ M +       + +N ++N  
Sbjct: 207 AEDVFLRFAREGATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINAR 266

Query: 186 ISNGQLDK--VPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
             +G L      ++L E+++    PD +TYN  ++AC+  ++ + A   F E+  ++  P
Sbjct: 267 AKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRP 326

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D  +Y+ + S++ +    ++A    KE+ ++  + + V Y+SLL  +   G  + V R+ 
Sbjct: 327 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 386

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           ++++    + +   Y  +I    K+G  + A  +YDE  +I  T D     +L+ +    
Sbjct: 387 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKM 446

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +++  A      +   G+KP   T+  L   Y K G+ +     F + + S  K  PD
Sbjct: 447 DRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVK--PD 502



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F+ L +K   PD  T ++LL+++ +       E + E++ + GF K  + YN M++
Sbjct: 347 AELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIH 406

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    +    A K   E+    + P
Sbjct: 407 MYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP 466

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             +++S L   Y K    + A  T   M +   + +R+AY  +L ++       +++ ++
Sbjct: 467 TLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLY 526

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + M+    K +D  Y  ++++L K  E ++ E +  + E++       + +IL+ A    
Sbjct: 527 RAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKA---- 582

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-H 421
             +    S   R   +G +P   +   +   Y K G+ EK L   +     +R+ VP+ H
Sbjct: 583 ECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLE----WIRQHVPNSH 638

Query: 422 RLIT 425
            LI+
Sbjct: 639 NLIS 642



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 14/351 (3%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIK--LVSGDYAVHLDLIS 118
           ++  EG TV  +  N ++    +  R+  A ++ + M  Q DI+  LVS +  ++    S
Sbjct: 213 RFAREGATVQVF--NAMMGVYARSGRFDDARQLLDAMRDQ-DIEPDLVSFNTLINARAKS 269

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKM--SECGFLKC 174
                  A      +      PD  T + L+ +  Q     +A A+ E+M  SEC   + 
Sbjct: 270 GCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASEC---RP 326

Query: 175 PL-PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
            L  YN M++++   G+  +   M +EL +K   PD VTYN  L A A + D E  E+  
Sbjct: 327 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 386

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            EL K     D I+Y+T+  +Y KM   + A     EM    C  + V Y+ L+     M
Sbjct: 387 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKM 446

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
               E  ++ ++M     K     ++ +I +  K G  + AE  +D         D    
Sbjct: 447 DRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAY 506

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
            ++L  +   ++       Y  ++  G KP    +++L     K  + +++
Sbjct: 507 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEI 557



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 23/386 (5%)

Query: 118  SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
             K++    AENF + L  +  G D    +AL+H+Y ++     A A+ + M + G L   
Sbjct: 759  GKLKLWQQAENFVKGLKQE-SGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTV 817

Query: 176  LPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
               N M+   I +G+LD+   V Q LQ+L    S   V   L L A A   D     K +
Sbjct: 818  ESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVL--LMLEAFAKAGDVFEVMKIY 875

Query: 233  LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
              +K     P+   Y  + SL    +        + EME    + + V  ++LL +YT  
Sbjct: 876  NGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGT 935

Query: 293  GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
            G  D  + ++  ++    + ++  Y  +I    +   F   E     +E       P++ 
Sbjct: 936  GNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR--NFRPEEGFTLLYEMGKRGLTPKLE 993

Query: 353  N--ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY---LKKGQMEKVLECF 407
            +  ILLAA       E A+  +  + TKG +   + + ++   Y       + E +L   
Sbjct: 994  SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAM 1053

Query: 408  KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA 466
            K+    +   +    ++  +Y      G  D AE +L +L+++   +ST  Y+++L  Y 
Sbjct: 1054 KE--DGIEPTIATMHILMTSYGT---SGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYL 1108

Query: 467  KAGKMPLIIVE--RMQKDNVQMDAET 490
            +     L I +   M++D V+ D + 
Sbjct: 1109 RNRDYSLGITKLLEMKRDGVEPDHQV 1134



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 11/315 (3%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T   +L ++ +     E   +   M   G+L     Y  M++L   N +   V  M+ E+
Sbjct: 854  TVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM 913

Query: 202  K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +     PD+V  N  L       + +   + +  + +  ++PD  +Y+TL  +Y +   P
Sbjct: 914  EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRP 973

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            E+  T L EM KR       +Y  LL+        ++   ++++M +   ++N + Y  +
Sbjct: 974  EEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMM 1033

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            +          KAE++    +           +IL+ +Y      + AE   N L +  +
Sbjct: 1034 MKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNL 1093

Query: 381  KPCYTTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +     +  +   YL+       + K+LE  +  +       PDH++ T+          
Sbjct: 1094 EISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVE------PDHQVWTSFIRAASLCEQ 1147

Query: 437  IDGAEHLLVTLRNAG 451
             D A  LL +L++ G
Sbjct: 1148 TDDAILLLKSLQDCG 1162



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 57/320 (17%), Positives = 118/320 (36%), Gaps = 107/320 (33%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N M+ +Y  +G+ D   Q+L  ++ ++  PD+V++N  + A A                
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAK--------------- 268

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                      S   +  + +EL       L E+ +   R + + Y++L+S  +     D
Sbjct: 269 -----------SGCLAAGVALEL-------LHEVRQAGLRPDAITYNTLISACSQGSNLD 310

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + + ++++M++   + +   Y  ++S   + G+ ++A                       
Sbjct: 311 DAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA----------------------- 347

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                       E  +  LV KG +P   T+  L + + K+G +E+V    ++       
Sbjct: 348 ------------ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEE------- 388

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI-- 474
                 L+ A + K       DG                  YN+++  Y K G++ L   
Sbjct: 389 ------LVKAGFRK-------DGI----------------TYNTMIHMYGKMGRLDLALG 419

Query: 475 IVERMQKDNVQMDAETQKVL 494
           + + M+      DA T  VL
Sbjct: 420 LYDEMRAIGCTPDAVTYTVL 439


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 14/314 (4%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           GD    LDL  ++  L+ A   F           T + +++   +  + +EA   ++   
Sbjct: 513 GDSEKALDLFDQMLSLNIAPTDF-----------TFNTIINGLCKVGQMSEARDKLKNFL 561

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           E GF+   + YN +++ +I  G +D    + +E+ +   SP+VVTY   +      N  +
Sbjct: 562 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 621

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   E+++  ++ D  +YS L   + K    E A     E+ +     NR+ Y+S++
Sbjct: 622 LALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 681

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S + ++   +  L  +KKM++     +   YT +I  L+K G    A ++Y E  S    
Sbjct: 682 SGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIV 741

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    ++L+    N+ QLE A      +  K + P    +  L  GY ++G +++    
Sbjct: 742 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL 801

Query: 407 FKKAIGSVRKWVPD 420
             + +   R  VPD
Sbjct: 802 HDEMLD--RGLVPD 813



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 135/352 (38%), Gaps = 35/352 (9%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
           K  EA +L++ M   G +   + YN M+  +   G +D    +  + L ++  P+VVTY+
Sbjct: 444 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 503

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + +     + D E A   F ++    I P   +++T+ +   K+    +A   LK   + 
Sbjct: 504 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 563

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + + Y+S++  +   G  D  L ++++M       N   YT +I+   K    + A
Sbjct: 564 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 623

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
               DE        D    + L+  +  R  +E A+  +  L+  G+ P    +  +  G
Sbjct: 624 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 683

Query: 394 YLKKGQMEKVLECFKKAIGS---------------------------------VRKWVPD 420
           +     ME  L  +KK I                                    +  VPD
Sbjct: 684 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPD 743

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
                   N L  +G ++ A  +L  + R     S  IYN+L+  Y + G +
Sbjct: 744 IITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNL 795



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/344 (18%), Positives = 141/344 (40%), Gaps = 37/344 (10%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
           +KL +G Y++ +  + K    +      E + ++   P   T ++++ + V      EA 
Sbjct: 251 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEAL 310

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAAC 219
            L E+M  CG     +    ++  Y + G LD    +  ++ ++   P+ VTY++ +  C
Sbjct: 311 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGC 370

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA--------------- 264
            +  + E A + + ++K   I P   + ++L   Y+K  L E+A+               
Sbjct: 371 CNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIF 430

Query: 265 -------------------TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
                              + L  M  +    N V+Y+ ++  +   G  D    ++  M
Sbjct: 431 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 490

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           ++   K N   Y+ +I    K G+ EKA +++D+  S++        N ++       Q+
Sbjct: 491 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 550

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             A       + +G  P   T+  +  G++K+G ++  L  +++
Sbjct: 551 SEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 594



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 149/386 (38%), Gaps = 57/386 (14%)

Query: 137 MRGPDT---CSALLHSYVQNKKSAEAEALMEKMSECG----FLKCPLPYNHMLNLYISNG 189
           MR P+T      LL+ YV           ++ +  C     F      +N++LN YI   
Sbjct: 105 MRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRAN 164

Query: 190 QL-------------DKVP---------------QMLQELK--------KNTSPDVVTYN 213
           ++             D +P                M+ EL+        +    D  T +
Sbjct: 165 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 224

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + + AC  +   E AE+ F E K+  +  D  +YS +     K          L+EM++R
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               +   ++S++      G   E LR+ ++M++    MN    T ++      G  + A
Sbjct: 285 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 344

Query: 334 ENIYDEWESISGTGDPRVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
            N++++      T D   PN     +L+    N   +E A   Y ++   GI P      
Sbjct: 345 LNLFNKI-----TEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 399

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  GYLK    E+  + F +A+      +  + ++ +    L + G +D A  LL  + 
Sbjct: 400 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSW---LCKGGKMDEACSLLDNMV 456

Query: 449 NAGHVSTEI-YNSLLRTYAKAGKMPL 473
           N G V   + YN ++  + + G M +
Sbjct: 457 NQGMVPNVVSYNDMILGHCRKGNMDM 482



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 6/238 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA    R+  E G + +      ++    K  R   AL+  + M  +  ++L    Y+  
Sbjct: 587 SALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR-EKGLELDVTAYSAL 645

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K R + SA++ F  L +    P+    ++++  + ++  + EA  +  K      
Sbjct: 646 IDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF-RDLNNMEAALVWYKKMINDR 704

Query: 172 LKCPL-PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAE 229
           + C L  Y  +++  +  G+L     +  E L K   PD++T+++ +    ++   E A 
Sbjct: 705 IPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENAR 764

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           K   E+ +  + P  + Y+TL + Y +    ++A T   EM  R    + V Y  L++
Sbjct: 765 KILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 822


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 5/335 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK 202
           SAL+ +Y ++    EA  + E M   G     + YN +++     G +  +V ++ +E+ 
Sbjct: 226 SALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEML 285

Query: 203 KN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +N   PD +TYN  LA C+     E A   F E+    ID D  +Y+TL     K    +
Sbjct: 286 RNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMD 345

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A   + EM  +    N V YS++   Y   G  ++ L ++ +M  L   ++   Y  ++
Sbjct: 346 LAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLL 405

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S   KLG FE A  +  E  S     D    N LL  Y  + +       +  +    + 
Sbjct: 406 SIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVF 465

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L   Y K    E+ +E F++   +  K   D  L +   N L + G +D A 
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLK--ADVVLYSELINALCKNGLVDSAV 523

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII 475
            LL  +   G   +   YNS++  + ++     ++
Sbjct: 524 LLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLV 558



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 8/235 (3%)

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-EFEKAENIYDE 339
           A+S+L+S Y   GY DE +++++ M     K N   Y  VI +  K G EF++   I++E
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   D    N LLA        E A + +N ++ +GI     T+  L     K GQ
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQ 343

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-Y 458
           M+   E   +  G  +K +P+    +   +   + G ++ A +L   ++  G     + Y
Sbjct: 344 MDLAYEIMLEMPG--KKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 459 NSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           N+LL  YAK G+    L + + M    V+ D  T   L      +   +EV+ +F
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVF 456


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ Y + K   EA 
Sbjct: 89  VSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREAR 148

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
            L+++M+E G L   + Y+ +L++Y+ N +  +   +  E+K+ N + D+ T N+ +   
Sbjct: 149 LLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY 208

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A++ F  L+K  I+P+ +SY+T+  +Y + EL  +A    + M+++   +N 
Sbjct: 209 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNV 268

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++++ +Y      ++   + ++M S   + N   Y+ +IS   K G+ ++A  ++ +
Sbjct: 269 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 328

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L     K G+
Sbjct: 329 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA----KAGR 384

Query: 400 MEKVLECFKKAIGS 413
            E+    F++A  S
Sbjct: 385 TEEATWVFRQAFES 398



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D+  ++  +  A+  F +L      P+  S   +L  Y + +   EA  L   M   
Sbjct: 203 IMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 262

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
              +  + YN M+ +Y    + +K   ++QE++ +   P+ +TY+  ++        + A
Sbjct: 263 DIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRA 322

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMEL-----------------PEKAATTLKEME 271
              F +L+ + ++ D + Y T+   Y ++ L                 P + A T+    
Sbjct: 323 ATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 382

Query: 272 KRTCR--------------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            RT                K+   +  +++LY+       V+ +++KM +     +    
Sbjct: 383 GRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVI 442

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             V+++  K  EFEKA+ +Y E +         V   +L+ Y ++   EM ES + RL
Sbjct: 443 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRL 500



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/325 (18%), Positives = 144/325 (44%), Gaps = 8/325 (2%)

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           E  +      YN +L   +   Q D    +  E+++   +PD  TY+  + +   +   +
Sbjct: 16  EAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFD 75

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +A     ++++ ++  D + YS L  L  ++    KA +    +++     + VAY+S++
Sbjct: 76  SALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMI 135

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           ++Y       E   + K+M       N   Y+ ++S  V+  +F +A +++ E + ++  
Sbjct: 136 NVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCA 195

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++  Y   + ++ A+  +  L    I+P   ++  +   Y +     + +  
Sbjct: 196 LDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHL 255

Query: 407 FK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
           F+      + + V  +  +   Y K  E    + A +L+  +++ G     I Y++++  
Sbjct: 256 FRLMQRKDIEQNVVTYNTMIKIYGKTMEH---EKATNLVQEMQSRGIEPNAITYSTIISI 312

Query: 465 YAKAGKM--PLIIVERMQKDNVQMD 487
           + KAGK+     + ++++   V++D
Sbjct: 313 WGKAGKLDRAATLFQKLRSSGVEID 337


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 22/412 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L +  R   A+++ E M  + ++   S  Y + +D ++K   L+ A N F+ L 
Sbjct: 292 NIVILGLCQNDRIDEAVQMFEKMN-ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 135 DKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P T   ++L+H         +A  L   M+  G    P+ YN M++     G L+
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE 410

Query: 193 KVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +   +++++ ++   PDVVTYN  +      +  E A   F E+++    P+  S++T+ 
Sbjct: 411 EACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470

Query: 252 SLYIKMELPEKAAT---------TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
               +    ++A            LK M       + V YS+L+S   ++   D+   + 
Sbjct: 471 LGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 530

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + M+    K        +I  L K G  ++A  + D   S   + D    N L+  +   
Sbjct: 531 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 590

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            Q E A    + +V +G+ P   T+  L  G  K  ++ +    F +   S     P+  
Sbjct: 591 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS--GCAPNLF 648

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAG----HVSTEIYNSLLRTYAKAGK 470
             TA        G +DG   L   +  AG    HV   +Y +L     K+G+
Sbjct: 649 TYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV---VYGTLAAELCKSGR 697



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 140/355 (39%), Gaps = 15/355 (4%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI- 117
           ++K  E+GH       N ++  L K  R + AL +   ME             + L L  
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 475

Query: 118 -SKI-----RG-LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSE 168
            SKI     RG L  A    + + D    PD  T S L+       +  +A  L+E M +
Sbjct: 476 QSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 535

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKET 227
                  +  N +++     G++ +  ++L  +     SPDVVTYN  +         E 
Sbjct: 536 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 595

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A +   ++    + P+ ++Y+ L S   K     +A     +M+   C  N   Y++L+ 
Sbjct: 596 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALIL 655

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGT 346
            + + G  D  L+++ +M+      +   Y  + + L K G   +A  I  E  ES+   
Sbjct: 656 GFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSE 715

Query: 347 --GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             GD  V    +   +   ++EMA  F   +V  G  P       L  G  K GQ
Sbjct: 716 AWGD-EVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 769



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 125/304 (41%), Gaps = 15/304 (4%)

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
           C +  N +L  + S GQ+DK  ++L+ +  +  +PD V+Y   L         E A + F
Sbjct: 211 CLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLF 270

Query: 233 LELKKTKIDPDWISYSTLTSLYIKM------ELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            + +         S  +L    I +      +  ++A    ++M +R    +  +Y  L+
Sbjct: 271 GDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILI 330

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  ++   +++K++      +   YT +I  L     F+ A  ++ +       
Sbjct: 331 DGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCP 390

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
             P   N+++ A   R  LE A     +++  G  P   T+  +  G  K  ++E+ L  
Sbjct: 391 PSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 450

Query: 407 FKKA--IGSVRKWVPDHRLI-----TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-Y 458
           F +   +G        + +I      +  ++  ++G +D A  LL  + + GHV   + Y
Sbjct: 451 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTY 510

Query: 459 NSLL 462
           ++L+
Sbjct: 511 STLI 514



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
           M + G    PL +  ++  + + G+  +  ++   +++  SP    YN+ + + + + + 
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQET 60

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E  +K    +      PD  +++T+     K    ++A   + EM  R       A SS 
Sbjct: 61  EAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMI-PPYFATSSF 119

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L+    +  +  + R + +++ +    N + Y  V+ +L       KA  + D  E    
Sbjct: 120 LA--HELCLRGSMERAF-QLLEIMPVANSSAYNIVVVALC------KAARVDDALELART 170

Query: 346 TGDPRVP------NILLAAYINRNQLEMAESFY--NRLVTKGIKPCYTTWELLTWGYLKK 397
             + R+P      + +L   ++  +++ A   Y  NR      +PC  T  +L  G+  +
Sbjct: 171 MSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR-----EPCLVTLNVLLEGFCSR 225

Query: 398 GQMEKVLE 405
           GQ++K  E
Sbjct: 226 GQVDKARE 233



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 43/238 (18%)

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D    ++A    ++ + +P  ++ + L   +      +KA   L+ M    C  + V+Y 
Sbjct: 192 DSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYC 251

Query: 284 SLLSLYTNMGYKDEVLRIW----------------------------------KKMMSLF 309
           ++L      G  +E +R++                                   + + +F
Sbjct: 252 TVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMF 311

Query: 310 AKMNDA-------EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
            KMN+         Y  +I  L K G+   A N++ +      T        L+      
Sbjct: 312 EKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 371

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           N  + A   +  +  +G  P   T+ ++     K+G +E+  +  KK I      VPD
Sbjct: 372 NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED--GHVPD 427


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 159/348 (45%), Gaps = 18/348 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWM-----ELQYDIKLVSGDYAVHL-DLISKIRGLSSAEN 128
           N I+  L KLK+Y  A+++   M     E   D+  V+    +HL  +   I    +A N
Sbjct: 294 NIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDV--VTFTSMIHLYSVCGHIENCEAAFN 351

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
               L + ++ P+  S  ALL +Y       EA  +  ++ + GF    + Y  +LN Y 
Sbjct: 352 MM--LAEGLK-PNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYG 408

Query: 187 SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            + +  K  ++ + +K+N   P++V+YN  + A  S    E A +   E+++ KI P+ +
Sbjct: 409 RSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVV 468

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           S  TL +   +     K  T L   E R  + N VAY+S +  Y N+G  D+ + ++  M
Sbjct: 469 SICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSM 528

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR--- 362
                K +   YT +IS   K+ +F +A +  +E   +       V + ++ AY  +   
Sbjct: 529 RKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASA 588

Query: 363 -NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             Q+  AES +N + + G  P   T+  +   Y    + EK+   F++
Sbjct: 589 LGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEE 636



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 126/324 (38%), Gaps = 42/324 (12%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +KN       YN+ +   A  N  + A   F E++K +  PD  +Y+ L + + +     
Sbjct: 143 QKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWR 202

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM---------------- 305
            A   + +M +     +R  Y++L++   + G   E L + KKM                
Sbjct: 203 WAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIML 262

Query: 306 ------------MSLF-------AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                       +S F        + +   +  +I  LVKL +++KA +I++  +     
Sbjct: 263 TAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSE 322

Query: 347 GDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             P V     ++  Y     +E  E+ +N ++ +G+KP   ++  L   Y  +G   + L
Sbjct: 323 CHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEAL 382

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLR 463
           + F +       + PD    T+  N          A  +   + RN    +   YN+L+ 
Sbjct: 383 QVFNEI--KQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALID 440

Query: 464 TYAKAGKM--PLIIVERMQKDNVQ 485
            Y   G +   + I+  M++D + 
Sbjct: 441 AYGSNGLLEDAIEILREMEQDKIH 464



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 155/395 (39%), Gaps = 43/395 (10%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           D  + ++  + ++ ++ +A  L  +M +C        YN ++N +   GQ      ++ +
Sbjct: 151 DIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDD 210

Query: 201 -LKKNTSPDVVTYNLWLAACASQND-KE------------------------TAEKA--- 231
            L+    P   TYN  + AC S  + KE                        TA K+   
Sbjct: 211 MLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQ 270

Query: 232 -------FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM--EKRTCRKNRVAY 282
                  F  +K T I PD  +++ +    +K++  +KA      M  +K  C  + V +
Sbjct: 271 YSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTF 330

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +S++ LY+  G+ +     +  M++   K N   Y  ++ +    G   +A  +++E + 
Sbjct: 331 TSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQ 390

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D      LL AY    + + A   +  +    +KP   ++  L   Y   G +E 
Sbjct: 391 NGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLED 450

Query: 403 VLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
            +E  ++     +   V     + AA  +  ++  ID    L         ++T  YNS 
Sbjct: 451 AIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTV--LSAAEMRGIKLNTVAYNSA 508

Query: 462 LRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           + +Y   G+    + +   M+K  ++ D+ T  VL
Sbjct: 509 IGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVL 543



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 102/270 (37%), Gaps = 40/270 (14%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQN----------- 223
           + YN  +  YI+ G+ DK   +   + KK    D VTY + ++ C   +           
Sbjct: 503 VAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEE 562

Query: 224 --------DKET--------------------AEKAFLELKKTKIDPDWISYSTLTSLYI 255
                    KE                     AE  F  +K     PD ++Y+ +   Y 
Sbjct: 563 MMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYN 622

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
             E  EK     +EME+   + + +A ++L+  +   G    VL + + M      ++D 
Sbjct: 623 AAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDT 682

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  ++S+   L +++ A ++    E           N+ L +     ++E+    + ++
Sbjct: 683 IFFEMVSACGLLHDWKTAVDMIKYMEPSLPVISSGCLNLFLNSLGKSGKIEIMLKLFFKM 742

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  G +  + T+ +L    L  G   K LE
Sbjct: 743 LASGAEVNFNTYSILLKNLLSSGNWRKYLE 772


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 134/292 (45%), Gaps = 3/292 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D   K + +S+A   F  +  +   P+  T ++L++    N K  EA AL ++M 
Sbjct: 239 FNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMV 298

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
                   + +N +LN +  N  + +  ++  ++ K+  +P+V TYN+ + A     + E
Sbjct: 299 NSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENME 358

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   +  +    + PD  +Y+ L +   +    E A   + EM+ +  + + + Y+ L+
Sbjct: 359 DAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILI 418

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
               N G   + LR+  +M     K +   Y  +I    K G    A N+  + E +   
Sbjct: 419 DSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRL 478

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            +    N+L+  +  +++LE A    N ++ KG+ P   T+E++T   ++KG
Sbjct: 479 ANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 143/303 (47%), Gaps = 10/303 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD----TCSALLHSYVQNKKSAE---AEAL 162
           + + ++ + K+  L+ A +  E++  K+RG      T + L+  Y +  K  +   A+A+
Sbjct: 166 FNIVINGLCKVGKLNKAGDIIEDM--KVRGVSANVITYNTLIDGYCKMGKIGKMYKADAI 223

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACAS 221
           +++M   G     + +N +++ +  +  +    ++  E+ ++   P+VVTYN  +    +
Sbjct: 224 LKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCN 283

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
                 A     ++  + + P+ I+++ L + + K ++ ++A     +M K+    N   
Sbjct: 284 NGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTT 343

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y+ L+  Y      ++   +++ M+      + + Y C+I+ L + G+ E A N+  E +
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMD 403

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +     D    NIL+ +  N+ +++ A    + +  KG+KP   T+  +  GY K+G + 
Sbjct: 404 TKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLR 463

Query: 402 KVL 404
             L
Sbjct: 464 AAL 466



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 140/332 (42%), Gaps = 9/332 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           L+ +Y +N ++       ++ S+ G        N +++  +  G++  +  + +E+ ++ 
Sbjct: 99  LVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRR 158

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE--- 261
             P ++++N+ +           A     ++K   +  + I+Y+TL   Y KM       
Sbjct: 159 IEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMY 218

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   LKEM       N V ++ L+  +         ++++ +M     K N   Y  +I
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI 278

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + L   G+  +A  + D+  +     +    N LL  +     ++ A   ++ +  +GI 
Sbjct: 279 NGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT 338

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P  TT+ +L   Y K   ME     ++  +G  +   PD          L  +GD++ A 
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLG--KGVCPDVSTYNCLIAGLCRKGDLEAAR 396

Query: 442 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           + LV+  +  H+  ++  YN L+ +    G+M
Sbjct: 397 N-LVSEMDTKHLKADLITYNILIDSLCNKGEM 427


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 160/358 (44%), Gaps = 4/358 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A + + +  E G    +     ++  L K      AL++   ME + +IK     Y++ +
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVI 252

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + K      A + F  +  K    D  T S+L+     + K  +   ++ +M     +
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + ++ ++++++  G+L +  ++  E+  +  +PD +TYN  +     +N    A + 
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F  +     +PD ++YS L + Y K +  +      +E+  +    N + Y++L+  +  
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +    ++++M+S     +   Y  ++  L   GE  KA  I+++ +    T    +
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            NI++    N ++++ A S +  L  KG+KP   T+ ++  G  KKG + +    F+K
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 183/424 (43%), Gaps = 27/424 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDYAVHLDLISKIRGLSSA 126
           + NR+   + + K+Y   L  C+ MEL       Y + ++   Y     L+     L  A
Sbjct: 72  DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRA 131

Query: 127 ENF-FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
               +E  PD +    T S L++ +    + +EA AL+++M E       +  + ++N  
Sbjct: 132 WKLGYE--PDTI----TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G++ +   ++  + +    PD VTY   L       +   A   F ++++  I    
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           + YS +     K    + A +   EME +  + + V YSSL+    N G  D+  ++ ++
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 305

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      +   ++ +I   VK G+  +A+ +Y+E  +     D    N L+  +   N 
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           L  A   ++ +V+KG +P   T+ +L   Y K  +++  +  F++   S +  +P+    
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI--SSKGLIPN---- 419

Query: 425 TAAYNKLE----EQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVE 477
           T  YN L     + G ++ A+ L   + + G   S   Y  LL      G++   L I E
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 479

Query: 478 RMQK 481
           +MQK
Sbjct: 480 KMQK 483



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 38/215 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L  A   F+ +  K   PD  T S L++SY + K+  +   L  ++S
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN ++  +  +G+L+   ++ QE+  +   P VVTY + L       +  
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 227 TAEKAFLELKKTK-----------------------------------IDPDWISYSTLT 251
            A + F +++K++                                   + PD ++Y+ + 
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
               K     +A    ++M++  C  +   Y+ L+
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 4/336 (1%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWL 216
           EA AL  +M   G     + YN +++ Y   G L++V Q++ E++K+  + DVVTYN  +
Sbjct: 218 EARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALI 277

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
              +     E A   F E+K+  +  + +++ST    + K  L ++A     +M  R   
Sbjct: 278 NCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMM 337

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N   Y+SL+      G  D+ + +  +M+      N   YT ++  L K G+  +A+N+
Sbjct: 338 PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNV 397

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
               E      +  +   L+  +   N  E A    N++  KG++   + +  L WG  K
Sbjct: 398 LSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCK 457

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
             ++++      K  G   +  P+  + T   + L + G    A  LL  + ++G     
Sbjct: 458 DQKVDEAKSLLHKMAGCGLR--PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNV 515

Query: 457 I-YNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ 491
           + Y +L+    KAG +   I    +   + +D   Q
Sbjct: 516 VTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQ 551



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 1/231 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           L+    +++K  EA++L+ KM+ CG     + Y  +++     G+  +   +L + L   
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSG 510

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             P+VVTY   +           A   F ++++  +DP+  +Y+ L   + K+    KA 
Sbjct: 511 FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAM 570

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             + EM  +    ++V Y+SL+  Y       +   +  KM+    +++   YTC IS  
Sbjct: 571 HLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGF 630

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             +   ++A  +  E      T D  V N L+  Y     +E A S  N +
Sbjct: 631 CNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 123/306 (40%), Gaps = 9/306 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++    +  K AEA+ ++  M   G     L Y  +++ +  N   ++   +L ++
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K K    DV  Y   +         + A+    ++    + P+ + Y+T+     K    
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L ++     + N V Y +L+      G   E +  + KM  L    N   YT +
Sbjct: 497 SEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTAL 556

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K+G   KA ++ +E      + D  V   L+  Y+ +  L+ A +   +++  G+
Sbjct: 557 IDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616

Query: 381 KP---CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +    CYT +     G+     M++      + IG+     PD  +      K ++ G++
Sbjct: 617 QLDLYCYTCF---ISGFCNMNMMQEARGVLSEMIGT--GITPDKTVYNCLIRKYQKLGNM 671

Query: 438 DGAEHL 443
           + A  L
Sbjct: 672 EEASSL 677



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 3/222 (1%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           NH+L     N Q   V ++   L     P+V T+N+ +     + +   A   F+ +K  
Sbjct: 173 NHILLRLARNRQGGLVRRLFDLLP---VPNVFTFNIVIDFLCKEGELVEARALFVRMKAM 229

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD ++Y++L   Y K    E+    + EM K  C  + V Y++L++ ++  G  ++ 
Sbjct: 230 GCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKA 289

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
              + +M       N   ++  + +  K G  ++A  ++ +        +      L+  
Sbjct: 290 YSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDG 349

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
                +L+ A    + +V +G+ P   T+ ++  G  K+G++
Sbjct: 350 TCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 391


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 173/433 (39%), Gaps = 42/433 (9%)

Query: 45  LLSLVYAKRS----AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100
           L+ + YAKR     A  T    +  G   + +    +V      +  + AL   E M+ +
Sbjct: 282 LMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAE 341

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160
             I+L    Y++ +    KI    SA+N F+                             
Sbjct: 342 -GIELTIVTYSILISGFGKINDTQSADNLFK----------------------------- 371

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAAC 219
              E  +  G L   + Y+++++ +  +G +D+  +++ E++++     +  Y+  +   
Sbjct: 372 ---EAKTNLGDLN-GIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGY 427

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
               D++     F  LK+    P  ISY  L +LY+K+    KA    KEME    + N 
Sbjct: 428 TIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNN 487

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             YS L+S + ++       RI+++M+    + + A Y  +I +  K+G  ++A  I ++
Sbjct: 488 KTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEK 547

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +        R    ++  +     ++ A    + +   G  P   T+  L  G ++K Q
Sbjct: 548 MQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQ 607

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIY 458
           +E+ +    K   S+    P+    T         GDI  A      ++  G  +   IY
Sbjct: 608 VERAVSVLNKM--SIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIY 665

Query: 459 NSLLRTYAKAGKM 471
            +LLR   K+G+M
Sbjct: 666 ETLLRACCKSGRM 678



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 97/238 (40%), Gaps = 1/238 (0%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
           +++ M   G     + YN +++  I   Q+++   +L ++     +P+  TY + +   A
Sbjct: 579 ILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYA 638

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
           +  D   A + F ++K+  +  D   Y TL     K    + A    +EM  +   +N  
Sbjct: 639 ATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTF 698

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y+ L+  +   G   E   + K+M       N   YT  I++  K G+ ++A+ + DE 
Sbjct: 699 VYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEM 758

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
             +    + +    L+  +   +  + A   +  +   G+KP    +  L    L + 
Sbjct: 759 SDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRA 816



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 113/283 (39%), Gaps = 7/283 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P    + L +   A + DK  A   F  ++   I+P+   +++L   Y        A + 
Sbjct: 275 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 334

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            +EM+        V YS L+S +  +        ++K+  +    +N   Y+ +I +  +
Sbjct: 335 TEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQ 394

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  ++AE +  E E           + ++  Y      +     + RL      P   +
Sbjct: 395 SGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIIS 454

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGS-VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           +  L   Y+K G++ K +   K+   S ++     + ++ + +  L    D   A  +  
Sbjct: 455 YGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLH---DFTNAFRIFE 511

Query: 446 TLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
            +  +G      IYN L+  + K G M   + I+E+MQK+ +Q
Sbjct: 512 EMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQ 554


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 152/348 (43%), Gaps = 6/348 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A N F  + +K   P+  T + L+    +  K  EA  ++ +MSE G +   + YN +++
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 184 LYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            Y   G +D   ++L  ++ N+  P+  TYN  +     +     A     ++ + K+ P
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I+Y++L     K+   E A   L  M +     ++  YS  +      G  +E   ++
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             + +   K N+  YT +I    K+G+ + A ++ +   + +   +    N+L+      
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            +++ A S   +++T G+KP   T+ +L    LK G  +  L+ F   +     + PD  
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVS--LGYQPDVC 615

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             TA  +    QG ++  + ++  +   G +   + Y  L+  YA+ G
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 93/208 (44%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L+ L    SP++ T+N  +       +   AE    ++ +  + PD  +Y++L   + + 
Sbjct: 183 LELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           +  + A      M ++ C++N V+Y++L+      G  +E L+++  M           Y
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I +L   G   +A N+++E +      +     +L+      N+++ A    + +  
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           KG+ P   T+  L  GY K+G ++   E
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFE 390



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 121/277 (43%), Gaps = 11/277 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  +  A +  E + +    P+  T + L+    + KK  EA +L+ KM 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + Y  ++   + +G  D   ++   +      PDV TY  +L A  SQ   E
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             +    ++ +  I PD ++Y+ L   Y ++ L  +A   LK M    C+ +    S L+
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 287 SLYTNMGYKDEVLRIWKKM-MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
               N+ +++ +     ++ +   + +N  +    I+ + K  E+E A  ++++      
Sbjct: 692 K---NLSHENRMKETRSEIGIDSVSNVNSVD----IADVWKTLEYEIALKLFEKMVEHGC 744

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           T D  +   L+A +  + +LE A+   + +  +G+ P
Sbjct: 745 TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 781


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 178/407 (43%), Gaps = 14/407 (3%)

Query: 114 LDLISKI---RGLS-SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            D+I K+   +GL+ +A   F+N+    R P   +C++LL++ V+N ++  A  + ++M 
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G +      + M+N +  +G++D+    +++++     P++VTY+  +    S  D E
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSL 285
            A+     + +  +  + ++Y+ L   Y K    ++A   L+ M E+     +  AY  L
Sbjct: 279 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVL 338

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  Y   G  D+ +R+  +M+ L  K N      +I+   K GE  +AE +       + 
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N LL  Y        A +  ++++ +GI+P   T+  L  G  + G  +  L+
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            +   +       PD    +   + L +  + +GA  L   +   G   + I +N+++  
Sbjct: 459 IWHLMMKX--GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
             K GKM     I ++M+      D  T + L I      S V   F
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL-IDGYCKASNVGQAF 562



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 2/262 (0%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     +L  YV+   +  A  + + M +CG +      N +LN  + NG+      + Q
Sbjct: 156 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++ +    PDV   ++ + A       + A     +++   ++P+ ++Y +L + Y+ + 
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-Y 317
             E A   LK M ++   +N V Y+ L+  Y      DE  ++ + M    A + D   Y
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAY 335

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             +I    + G+ + A  + DE   +    +  + N L+  Y  R ++  AE    R+V 
Sbjct: 336 GVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395

Query: 378 KGIKPCYTTWELLTWGYLKKGQ 399
             +KP   ++  L  GY ++G 
Sbjct: 396 WNLKPDSYSYNTLLDGYCREGH 417



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 7/269 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ----LDKVPQML 198
           C++L++ Y +  +  EAE ++ +M +         YN +L+ Y   G      +   +ML
Sbjct: 370 CNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           QE      P V+TYN  L         + A + +  + K  + PD + YSTL     KME
Sbjct: 430 QE---GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKME 486

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E A+T  K++  R   K+R+ +++++S    MG   E   I+ KM  L    +   Y 
Sbjct: 487 NFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYR 546

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I    K     +A  +    E    +    + N L++      +L         +  +
Sbjct: 547 TLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIR 606

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           G+ P   T+  L  G+ K+G ++K    +
Sbjct: 607 GLTPNIVTYGALIDGWCKEGMLDKAFSSY 635



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 5/267 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + L+  Y +  K  EAE ++  M E    +     Y  +++ Y   G++D   ++L E
Sbjct: 298 TYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDE 357

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+     ++   N  +     + +   AE     +    + PD  SY+TL   Y +   
Sbjct: 358 MLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGH 417

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A     +M +       + Y++LL     +G  D+ L+IW  MM      ++  Y+ 
Sbjct: 418 TSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYST 477

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  L K+  FE A  ++ +  +   T      N +++      ++  AE  ++++   G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 380 IKPCYTTWELLTWGYLKK---GQMEKV 403
             P   T+  L  GY K    GQ  KV
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKV 564



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 157/418 (37%), Gaps = 39/418 (9%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           A  +C+ M LQ  I+     Y   L  + ++     A   +  +      PD    S LL
Sbjct: 421 AFNLCDKM-LQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLL 479

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTS 206
               + +    A  L + +   GF K  + +N M++     G++ +  ++  ++K    S
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TY   +      ++   A K    +++  I P    Y++L S   K     +    
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDL 599

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR---------------IWKKMMS---- 307
           L EM  R    N V Y +L+  +   G  D+                  I   M+S    
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYR 659

Query: 308 ---------LFAKMND----AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
                    L  KM D     ++ C + S ++    +K  +  DE        +  V NI
Sbjct: 660 LGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNI 719

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            +A      +++ A  F++ L  KG  P   T+  L  GY   G +++      + +   
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR-- 777

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           R  VP+     A  N L +  ++D A+ L   L   G     + YN+L+  Y K G M
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 17/308 (5%)

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
           F   P  ++ +L +Y+  G       +   + K    P + + N  L       +  TA 
Sbjct: 152 FAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAH 211

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             + ++ +  I PD    S + + + K    ++AA  +K+ME      N V Y SL++ Y
Sbjct: 212 YVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGY 271

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGD 348
            ++G  +    + K M       N   YT +I    K  + ++AE +     E  +   D
Sbjct: 272 VSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPD 331

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            R   +L+  Y    +++ A    + ++  G+K        L  GY K+G++ +     +
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA----E 387

Query: 409 KAIGSVRKW--VPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEI-YNSL 461
             I  +  W   PD    + +YN L +    +G    A +L   +   G   T + YN+L
Sbjct: 388 GVITRMVDWNLKPD----SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTL 443

Query: 462 LRTYAKAG 469
           L+   + G
Sbjct: 444 LKGLCRVG 451



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 94/478 (19%), Positives = 176/478 (36%), Gaps = 93/478 (19%)

Query: 62  WKEEGHTVHKYEL----------------NRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           +  EGHT   + L                N +++ L ++  +  AL++   M ++  +  
Sbjct: 412 YCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM-MKXGVAP 470

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALM 163
               Y+  LD + K+     A   ++++  +   +   T + ++    +  K  EAE + 
Sbjct: 471 DEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIF 530

Query: 164 EKMSECGFLKCPLPYNHMLNLYI--SN-GQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
           +KM + G     + Y  +++ Y   SN GQ  KV   ++  ++  SP +  YN  ++   
Sbjct: 531 DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME--REXISPSIEMYNSLISGLF 588

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                        E+    + P+ ++Y  L   + K  + +KA ++  EM +     N +
Sbjct: 589 KSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANII 648

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMS--------------------------------L 308
             S+++S    +G  DE   + +KM+                                  
Sbjct: 649 ICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKT 708

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIY----------DEWE--------SISGTGDPR 350
           F   N+  Y   I+ L K G+ + A   +          D +         S +G  D  
Sbjct: 709 FLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 768

Query: 351 ------------VPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
                       VPNI     L+        ++ A+  +++L  KG+ P   T+  L  G
Sbjct: 769 FRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDG 828

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           Y K G M+   +   K I       P     +A  N L + GDI+ +  LL  +  AG
Sbjct: 829 YCKIGNMDAAFKLKDKMIE--EGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 81/179 (45%), Gaps = 1/179 (0%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
           K  +A      +S  GF+     Y  +++ Y + G +D+  ++  E L++   P++VTYN
Sbjct: 729 KVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYN 788

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +       + + A++ F +L +  + P+ ++Y+TL   Y K+   + A     +M + 
Sbjct: 789 ALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE 848

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332
               + V YS+L++     G  +  +++  +M+         EY  ++    K   + +
Sbjct: 849 GISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNE 907


>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 714

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 171/422 (40%), Gaps = 57/422 (13%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-- 121
           +E   VH Y  N  +  L   +RY  A +V E ME Q     VS D+     +I+ +R  
Sbjct: 257 KEFRDVHVY--NASLSGLLYCQRYDDACKVYEAMEAQN----VSPDHVTCSIMITMMRKN 310

Query: 122 GLSSAE--NFFENLPDKMR--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           G S+ E   FFE +  K     P+   AL+ S+       EA  +  +M++ G     + 
Sbjct: 311 GRSAKEAWEFFEKMNRKGVKWSPEILGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIV 370

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK----KNTS--------------------------- 206
           YN +++ Y  + Q+++V  +  E+K    K TS                           
Sbjct: 371 YNTLMDAYNKSNQIEEVEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQ 430

Query: 207 -----PDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                PD  +Y   ++A   QN   + A  AFL +KK  I P   SY+ L   Y      
Sbjct: 431 DAGLQPDAKSYTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWH 490

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA +T + M+    + +   Y++LL  +   G    ++RIWK MMS   +     +  +
Sbjct: 491 EKAYSTFENMQTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNIL 550

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    K G + +A ++  E+  +         N+L+ AY    Q          + T  +
Sbjct: 551 LDGFAKQGHYVEARDVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATLNL 610

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH------RLITAAYNKLEEQ 434
           KP   T+  + + Y++     +     K  + S +  VPD       R I  A +K++ +
Sbjct: 611 KPDSITYLTMIYAYIRVRDFRRAFFYHKTMVKSGQ--VPDAKSYEKLRAILEAKSKIKNR 668

Query: 435 GD 436
            D
Sbjct: 669 KD 670



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 140/361 (38%), Gaps = 49/361 (13%)

Query: 140 PD--TCSALLHSYVQNKKSA-EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           PD  TCS ++    +N +SA EA    EKM+  G    P     ++  +   G  ++   
Sbjct: 295 PDHVTCSIMITMMRKNGRSAKEAWEFFEKMNRKGVKWSPEILGALVKSFCDEGLKNEALI 354

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +  E+ KK    + + YN  + A    N  E  E  F E+K   + P   +++ L   Y 
Sbjct: 355 IQVEMAKKGAFSNAIVYNTLMDAYNKSNQIEEVEGIFAEMKAKGLKPTSATFNILMDAYS 414

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMND 314
           +   PE     L EM+    + +  +Y+ L+S Y       D     + +M  +  K   
Sbjct: 415 RRMQPEIVEELLLEMQDAGLQPDAKSYTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTS 474

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +I +    G  EKA   Y  +E++                               
Sbjct: 475 HSYTALIHAYSVSGWHEKA---YSTFENMQ------------------------------ 501

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL-ITAAYNKLEE 433
             T+GIKP   T+  L   + + G  + ++  +K  +    + V   R+      +   +
Sbjct: 502 --TEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMS---EKVEGTRVTFNILLDGFAK 556

Query: 434 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG---KMPLIIVERMQKDNVQMDAE 489
           QG    A  ++      G H +   YN L+  YA+ G   K+P ++ E M   N++ D+ 
Sbjct: 557 QGHYVEARDVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKE-MATLNLKPDSI 615

Query: 490 T 490
           T
Sbjct: 616 T 616



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 124/312 (39%), Gaps = 43/312 (13%)

Query: 189 GQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+ D++  +   L +N    DV  YN  L+        + A K +  ++   + PD ++ 
Sbjct: 241 GKGDELMVLFMNLPQNKEFRDVHVYNASLSGLLYCQRYDDACKVYEAMEAQNVSPDHVTC 300

Query: 248 STLTSLYIKMELPEKAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           S + ++  K     K A    ++M ++  + +     +L+  + + G K+E L I  +M 
Sbjct: 301 SIMITMMRKNGRSAKEAWEFFEKMNRKGVKWSPEILGALVKSFCDEGLKNEALIIQVEM- 359

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                              K G F  A                 V N L+ AY   NQ+E
Sbjct: 360 ------------------AKKGAFSNA----------------IVYNTLMDAYNKSNQIE 385

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE-CFKKAIGSVRKWVPDHRLIT 425
             E  +  +  KG+KP   T+ +L   Y ++ Q E V E   +     ++     +  + 
Sbjct: 386 EVEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLI 445

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKD 482
           +AY +  +  D+  A +  + ++  G   ++  Y +L+  Y+ +G  +      E MQ +
Sbjct: 446 SAYGRQNKMTDM--AANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTE 503

Query: 483 NVQMDAETQKVL 494
            ++   ET   L
Sbjct: 504 GIKPSIETYTAL 515


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 180/421 (42%), Gaps = 18/421 (4%)

Query: 89  HALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKMR--GPDTC 143
           HAL+   W+E      L   D   HL +I    +   L+ A     ++P K      D  
Sbjct: 134 HALQFFRWVERA---GLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLF 190

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
             L+ SY +     E+  + +KM E G  +    Y+ +  + +  G+     +     L 
Sbjct: 191 VLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLN 250

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P   TYN+ +         ETA + F E+K+ +I PD ++Y+T+ + Y +++  E+
Sbjct: 251 EGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEE 310

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     EM+ R      ++Y++++  Y ++G  D+ LR++++M S   K N   Y+ ++ 
Sbjct: 311 AEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLP 370

Query: 323 SLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            L    +  +A+N+  E  E      D  +   L+       QL+ A      ++   I 
Sbjct: 371 GLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIP 430

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL--ITAAYNKLEE----QG 435
                + +L   + K G  ++ ++   K I       P + L   ++ YN + E     G
Sbjct: 431 TEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSG 490

Query: 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKV 493
               AE L   L   G      +N+L+R ++K G  +    I++ M +  V  +A+  ++
Sbjct: 491 QTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRL 550

Query: 494 L 494
           L
Sbjct: 551 L 551


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 180/421 (42%), Gaps = 18/421 (4%)

Query: 89  HALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKMR--GPDTC 143
           HAL+   W+E      L   D   HL +I    +   L+ A     ++P K      D  
Sbjct: 134 HALQFFRWVERA---GLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLF 190

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
             L+ SY +     E+  + +KM E G  +    Y+ +  + +  G+     +     L 
Sbjct: 191 VLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLN 250

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P   TYN+ +         ETA + F E+K+ +I PD ++Y+T+ + Y +++  E+
Sbjct: 251 EGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEE 310

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     EM+ R      ++Y++++  Y ++G  D+ LR++++M S   K N   Y+ ++ 
Sbjct: 311 AEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLP 370

Query: 323 SLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            L    +  +A+N+  E  E      D  +   L+       QL+ A      ++   I 
Sbjct: 371 GLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIP 430

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL--ITAAYNKLEE----QG 435
                + +L   + K G  ++ ++   K I       P + L   ++ YN + E     G
Sbjct: 431 TEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSG 490

Query: 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKV 493
               AE L   L   G      +N+L+R ++K G  +    I++ M +  V  +A+  ++
Sbjct: 491 QTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRL 550

Query: 494 L 494
           L
Sbjct: 551 L 551


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 4/296 (1%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + Y+ ++N Y   G+L KV +++QE++ K   P++ TYN  +         + AE+   E
Sbjct: 11  VSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLRE 70

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    I PD + Y+TL   + K+   + A     EMEK+    + +AY++++      G 
Sbjct: 71  MINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGK 130

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             E  +++ KM S   + ++  YT +I    K GE EKA +++++      T +      
Sbjct: 131 MMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTA 190

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L        Q++ A    + +  KG++    T+  L  G  K G + + ++  ++    V
Sbjct: 191 LADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM--EV 248

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
               PD    T   +   + G++  A  LL  + + G   T I +N L+  +  +G
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD +SYST+ + Y      +K    ++EM+ +  + N   Y+S++ L    G  D+  R+
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            ++M++     +   YT +I    KLG  + A  ++DE E      D      ++     
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
             ++  A+  +N++ ++G++P   T+  L  GY K G+MEK      + + S     P+ 
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS--GLTPNV 185

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
              TA  + L + G +D A  LL  +   G  ++   YNSL+    K+G +
Sbjct: 186 VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNI 236



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 132/325 (40%), Gaps = 25/325 (7%)

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDV 209
            ++ K  +AE ++ +M   G +   + Y  +++ +   G +    ++  E+ K+   PD 
Sbjct: 56  CKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDF 115

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           + Y   +           A+K F ++    ++PD ++Y+TL   Y K    EKA +   +
Sbjct: 116 IAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQ 175

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +     N V Y++L      +G  D    +  +M     ++N   Y  +++ L K G 
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN 235

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
             +A  + +E E      D      L+ AY    ++  A      ++ +G++P   T+ +
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNV 295

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI--TAAYNKLEEQGDIDGAEHLLVTL 447
           L  G+   G +E            +  W+ +  ++  T  YN L +Q            +
Sbjct: 296 LMNGFCMSGMLEDG--------ERLLAWMLEKGIMPNTTTYNSLMKQ----------YCI 337

Query: 448 RNAGHVSTEIYNSLLRTYAKAGKMP 472
           RN    +TEIY  +       G MP
Sbjct: 338 RNNMRCTTEIYKGM----CARGVMP 358



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 3/270 (1%)

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PDVV+Y+  +       + +   K   E++   + P+  +Y+++  L  K    + 
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+EM  +    + V Y++L+  +  +G      +++ +M       +   YT VI 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L + G+  +A+ ++++  S     D      L+  Y    ++E A S +N++V  G+ P
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L  G  K GQ++   E   +  G  +    +     +  N L + G+I  A  
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCG--KGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           L+  +  AG +  T  + +L+  Y K G+M
Sbjct: 242 LMEEMEVAGMYPDTITFTTLMDAYCKTGEM 271


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 152/348 (43%), Gaps = 6/348 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A N F  + +K   P+  T + L+    +  K  EA  ++ +MSE G +   + YN +++
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 184 LYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            Y   G +D   ++L  ++ N+  P+  TYN  +     +     A     ++ + K+ P
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             I+Y++L     K+   E A   L  M +     ++  YS  +      G  +E   ++
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             + +   K N+  YT +I    K+G+ + A ++ +   + +   +    N+L+      
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            +++ A S   +++T G+KP   T+ +L    LK G  +  L+ F   +     + PD  
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVS--LGYQPDVC 615

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             TA  +    QG ++  + ++  +   G +   + Y  L+  YA+ G
Sbjct: 616 TYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 20/276 (7%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  +  A +  E + +    P+  T + L+    + KK  EA +L+ KM 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + Y  ++   + +G  D   ++   +      PDV TY  +L A  SQ   E
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             +    ++ +  I PD ++Y+ L   Y ++ L  +A   LK M    C+          
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKP--------- 682

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           SLY        ++ I  K +S   +M +      I S+    E+E A  ++++      T
Sbjct: 683 SLY--------IVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCT 734

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            D  +   L+A +  + +LE A+   + +  +G+ P
Sbjct: 735 IDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 770



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 93/208 (44%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L+ L    SP++ T+N  +       +   AE    ++ +  + PD  +Y++L   + + 
Sbjct: 183 LELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN 242

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           +  + A      M ++ C++N V+Y++L+      G  +E L+++  M           Y
Sbjct: 243 KGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I +L   G   +A N+++E +      +     +L+      N+++ A    + +  
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           KG+ P   T+  L  GY K+G ++   E
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFE 390



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            AL+  + Q ++  EA+ L+  M E G       YN +L+     G   +  +++  + +
Sbjct: 741 GALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVE 800

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   P + +Y L +     +   E A+  F  L     + D +++  L    +K +L ++
Sbjct: 801 NGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDE 860

Query: 263 AATTLKEMEKRTCRKNRVAYSSLL 286
            +  +  ME++ C+ N + YS L+
Sbjct: 861 CSELIDIMEEKGCQPNPLTYSLLI 884


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 5/269 (1%)

Query: 146 LLHSYVQNKKSAEAEA-LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-- 202
           LL      K+  EA   L+ +MSE G     + YN +L  +    + ++  ++L  +   
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 203 --KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             ++  P++V+YN  +    ++   + A   FL++    I P+ ++Y+ +     K ++ 
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    ++M  +  R N V Y+ L+  Y ++G   EV+R+ K+M +   + +   Y  +
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLL 315

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K G+  +A  ++D         D  +  I+L  Y  +  L    SF + +V  GI
Sbjct: 316 LDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGI 375

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            P +  + ++   + KK  + + ++ F K
Sbjct: 376 SPNHYIFNIVFCAFAKKAMIGEAMDIFNK 404



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 115/274 (41%), Gaps = 14/274 (5%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID-------PDWISYSTLTSLYIKME 258
           +P+VV+YN  L     +N  E A    LEL     D       P+ +SY+T+ + +    
Sbjct: 163 TPNVVSYNTLLKGFCDENRAEEA----LELLHMMADGQVRSCPPNLVSYNTVINGFFTEG 218

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             +KA     +M  +    N V Y+ ++         D    ++++M+    + N   YT
Sbjct: 219 QVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYT 278

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
           C+I   + +G++++   +  E  +     D     +LL     + +   A   ++ ++ K
Sbjct: 279 CLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRK 338

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GIKP  + + ++  GY  KG + ++       +G+     P+H +    +    ++  I 
Sbjct: 339 GIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN--GISPNHYIFNIVFCAFAKKAMIG 396

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            A  +   +R  G     + Y +L+    K G++
Sbjct: 397 EAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRV 430



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 126/311 (40%), Gaps = 3/311 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y + LD + K    + A   F+++  K   PD      +LH Y      +E  + ++ M 
Sbjct: 312 YGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMV 371

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G       +N +   +     + +   +  ++++   SP+VV Y   + A       +
Sbjct: 372 GNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVD 431

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE  F ++    + P+ + +++L      ++  EKA     EM  +    N V +++++
Sbjct: 432 DAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIM 491

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   +  R+   M  +  + +   Y  +I     +G+ ++A  + D   S+   
Sbjct: 492 CNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLK 551

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +    N LL  Y    +++ A S +  +++ GI P   T+  +  G  K  +  +  E 
Sbjct: 552 PNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKEL 611

Query: 407 FKKAIGSVRKW 417
           +   I S ++W
Sbjct: 612 YLNMITSGKQW 622



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 18/287 (6%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT--KIDPDWISYSTLTSL 253
           +M+++     +PDV TY++ +         E    AF  + KT  +++   +    L  L
Sbjct: 81  RMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGL 140

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM- 312
                + E     L+ M +  C  N V+Y++LL  + +    +E L +   M     +  
Sbjct: 141 CDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSC 200

Query: 313 --NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-----ILLAAYINRNQL 365
             N   Y  VI+     G+ +KA N++ +   ++  G P  PN     I++        +
Sbjct: 201 PPNLVSYNTVINGFFTEGQVDKAYNLFLD---MTDQGIP--PNVVTYTIVIDGLCKAQVV 255

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           + AE  + +++ KG++P   T+  L  GYL  GQ ++V+   K+   S     PD     
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM--SAHGLEPDCFTYG 313

Query: 426 AAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
              + L ++G    A  L  ++ R        IY  +L  YA  G +
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGAL 360



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 7/264 (2%)

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD----KVPQMLQELKKN 204
           ++ +     EA  +  KM + G     + Y  +++     G++D    K  QM+ E    
Sbjct: 388 AFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINE---G 444

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            +P++V +   +    + +  E A + F E+    I P+ + ++T+           KA 
Sbjct: 445 VAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQ 504

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +  ME+   R + ++Y++L+  +  +G  DE  ++   M+S+  K N+  Y  ++   
Sbjct: 505 RLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGY 564

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G  + A +++ E  S   T      N +L       +   A+  Y  ++T G +   
Sbjct: 565 CRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSI 624

Query: 385 TTWELLTWGYLKKGQMEKVLECFK 408
            T+ ++  G  K   +++ L+ F+
Sbjct: 625 YTYNIILNGLSKNNCVDEALKMFQ 648



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + +LH   + ++ +EA+ L   M   G       YN +LN    N  +D+  +M Q L
Sbjct: 591 TYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSL 650

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K+   D++T+N+ + A      KE A   F  +    + PD  +Y  +    I+    
Sbjct: 651 CSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSL 710

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLL 286
           E+      EMEK  C  N +  + L+
Sbjct: 711 EEFDGMFSEMEKSGCAPNSLMLNFLV 736



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 44/269 (16%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S  AL+  +    K+ EA  L++ M   G       YN +L+ Y  +G++D    +
Sbjct: 517 PDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSV 576

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            QE+  N  +P VVTYN  L                  L KT+       +S    LY+ 
Sbjct: 577 FQEMLSNGITPVVVTYNTILHG----------------LFKTR------RFSEAKELYLN 614

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           M       T+ K+    T       Y+ +L+  +     DE L++++ + S   +++   
Sbjct: 615 M------ITSGKQWSIYT-------YNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIIT 661

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAA--YINRNQLEMAESFYN 373
           +  +I +L+K G  E A N++    +IS  G  P V    L A   I    LE  +  ++
Sbjct: 662 FNIMIGALLKDGRKEDAMNLF---ATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFS 718

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            +   G  P       L    L +G + +
Sbjct: 719 EMEKSGCAPNSLMLNFLVRRLLLRGDISR 747


>gi|186478941|ref|NP_174121.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332192779|gb|AEE30900.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 388

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 6/269 (2%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
           +T   R+++L   ++     + +W + G  ++   L  ++  L + +R+ HAL+V EW+ 
Sbjct: 33  ETSHSRIMALGREQKKVTPPLDEWLKRGKDLNPAVLRGLINSLCESQRFNHALQVSEWIT 92

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA- 157
            +    L + D+A  L L+    GL  AE FF+++P+ MR     + LL  Y  +KK+  
Sbjct: 93  KRGIFDLSTEDFASRLCLVEISTGLKEAEKFFKSIPENMRDDSVHTTLLSLYTISKKTRH 152

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLW 215
           EAEA  + M     L  P PY  M+ LY   G+ + + ++L+++K+N       +T N  
Sbjct: 153 EAEATYQTMRVQNMLLKPYPYYSMIYLYALLGEKNMIDEILRQMKENGVEHDKNLTANNV 212

Query: 216 LAACASQNDKETAEKAF--LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           L A AS  D E  E     LE+++ +    W +  ++   Y+K     KA   L+  E  
Sbjct: 213 LKAYASLPDVEAMEMFLMGLEVEEPRFSLAWQTGISIAKAYLKGGSSRKAVEMLRRTELV 272

Query: 274 TCRKNR-VAYSSLLSLYTNMGYKDEVLRI 301
              K++  A   L+ +Y + G K +  R+
Sbjct: 273 VDTKSKDSANKVLMMMYWDAGAKQDASRL 301


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 205/478 (42%), Gaps = 51/478 (10%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           M   K  G +   +  N ++  L K KR K A ++ + M L   +      Y   +D   
Sbjct: 205 MTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEM-LDRRVAPNRITYNTLIDGYC 263

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K+  L  A N  E +  +   P   T ++LL+   + +   EA+ ++E+M   GF+    
Sbjct: 264 KVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRF 323

Query: 177 PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  + + ++  G +D    + +E ++K       T ++ L A   + + E AE+   + 
Sbjct: 324 TYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKF 383

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  + P  + ++T+ + Y ++    KA TT+++ME    R N V Y+SL+  +  M   
Sbjct: 384 LENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNM 443

Query: 296 DEVLRIWKKMM---------------------SLF--------------AKMNDAEYTCV 320
           +E  +  KKM+                      LF               K N   Y C+
Sbjct: 444 EEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCL 503

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+ L K     +AE I  +        + ++ N+L+       +L+ A  F++ +V + I
Sbjct: 504 INCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREI 563

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGD 436
            P   T+ +L  G  KKG   KV+E    A    RK +    +IT  YN L       G+
Sbjct: 564 VPTLVTYNILINGLCKKG---KVMEAENLASEITRKGL-SFDVIT--YNSLISGYSSAGN 617

Query: 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           +  A  L  T++ +G   T   N+  R  A  GK  L++VE++ ++ +QM+    +V+
Sbjct: 618 VQKALELYETMKKSGIKPT--LNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVI 673



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+  + + K   EAE  ++KM E G L     YN +++ Y  +   D+  Q+L+E+
Sbjct: 429 TYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEM 488

Query: 202 -KKNTSPDVVTYNLWLAA-CASQNDKET-------------------------------- 227
            KK   P+V++Y   +   C   N  E                                 
Sbjct: 489 EKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKL 548

Query: 228 --AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A + F E+   +I P  ++Y+ L +   K     +A     E+ ++    + + Y+SL
Sbjct: 549 KDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSL 608

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +S Y++ G   + L +++ M     K     Y  +I+   K G     E IY E   ++ 
Sbjct: 609 ISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQMNL 667

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D  + N L+  Y+    ++ A S ++ +  +GI+P   T+  L  G+ K+G+M KV  
Sbjct: 668 VPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKN 727

Query: 406 CFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGA 440
                   +R  +P    + ++   + KL+   D DGA
Sbjct: 728 LVNDM--KIRGLIPKTETYDILIVGHCKLK---DFDGA 760



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 10/331 (3%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           LL    ++K  +E+  L   M + G L      N  L   +S  + +   Q+  E+ +  
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD   Y   + A     D + A +    +K+  + P    Y+ +     K +  + A 
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM  R    NR+ Y++L+  Y  +G  +E   I ++M     +     +  +++ L
Sbjct: 238 KLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGL 297

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            +    E+A+ + +E E      D      L   ++    ++ + +     V KG++   
Sbjct: 298 CRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILD 357

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T  +L     K+G MEK  E  KK + +     P         N   + GDI+ A   +
Sbjct: 358 YTCSILLNALCKEGNMEKAEEVLKKFLEN--GLAPVGVFFNTIVNGYCQVGDINKAYTTI 415

Query: 445 VTLRNAG----HVSTEIYNSLLRTYAKAGKM 471
             +   G    HV+   YNSL++ + +   M
Sbjct: 416 EKMEAVGLRPNHVT---YNSLVKKFCEMKNM 443


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK--VPQMLQEL 201
           +A++  Y ++ +  +A  L++ M +       + +N ++N    +G L      ++L E+
Sbjct: 65  NAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEV 124

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++    PD +TYN  ++AC+  ++ + A   F E+  ++  PD  +Y+ + S++ +    
Sbjct: 125 RQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 184

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    KE+ ++  + + V Y+SLL  +   G  + V R+ ++++    + +   Y  +
Sbjct: 185 QEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTM 244

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K+G  + A  +YDE  +I  T D     +L+ +    +++  A      +   G+
Sbjct: 245 IHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGL 304

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           KP   T+  L   Y K G+ +     F + + S  K  PD
Sbjct: 305 KPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVK--PD 342



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F+ L +K   PD  T ++LL+++ +       E + E++ + GF K  + YN M++
Sbjct: 187 AELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIH 246

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    +    A K   E+    + P
Sbjct: 247 MYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP 306

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             +++S L   Y K    + A  T   M +   + +R+AY  +L ++       +++ ++
Sbjct: 307 TLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLY 366

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + M+    K +D  Y  ++++L K  E ++ E +  + E++       + +IL+ A    
Sbjct: 367 RAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKA---- 422

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-H 421
             +    S   R   +G +P   +   +   Y K G+ EK L   +     +R+ VP+ H
Sbjct: 423 ECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLE----WIRQHVPNSH 478

Query: 422 RLIT 425
            LI+
Sbjct: 479 NLIS 482



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 9/270 (3%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPL-PYNHMLNLYISNGQLDKV 194
           PD  T + L+ +  Q     +A A+ E+M  SEC   +  L  YN M++++   G+  + 
Sbjct: 131 PDAITYNTLISACSQGSNLDDAVAVFEEMIASEC---RPDLWTYNAMVSVHGRCGKAQEA 187

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             M +EL +K   PD VTYN  L A A + D E  E+   EL K     D I+Y+T+  +
Sbjct: 188 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 247

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y KM   + A     EM    C  + V Y+ L+     M    E  ++ ++M     K  
Sbjct: 248 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 307

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              ++ +I +  K G  + AE  +D         D     ++L  +   ++       Y 
Sbjct: 308 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYR 367

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
            ++  G KP    +++L     K  + +++
Sbjct: 368 AMIKDGYKPDDGLYQVLLAALAKGNEHDEI 397



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 23/386 (5%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K++    AENF + L  +  G D    +AL+H+Y ++     A A+ + M + G L   
Sbjct: 599 GKLKLWQQAENFVKGLKQE-SGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTV 657

Query: 176 LPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
              N M+   I +G+LD+   V Q LQ+L    S   V   L L A A   D     K +
Sbjct: 658 ESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVL--LMLEAFAKAGDVFEVMKIY 715

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +K     P+   Y  + SL    +        + EME    + + V  ++LL +YT  
Sbjct: 716 NGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGT 775

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  D  + ++  ++    + ++  Y  +I    +   F   E     +E       P++ 
Sbjct: 776 GNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR--NFRPEEGFTLLYEMGKRGLTPKLE 833

Query: 353 N--ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY---LKKGQMEKVLECF 407
           +  ILLAA       E A+  +  + TKG +   + + ++   Y       + E +L   
Sbjct: 834 SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAM 893

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA 466
           K+    +   +    ++  +Y      G  D AE +L +L+++   +ST  Y+++L  Y 
Sbjct: 894 KE--DGIEPTIATMHILMTSYGT---SGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYL 948

Query: 467 KAGKMPLIIVE--RMQKDNVQMDAET 490
           +     L I +   M++D V+ D + 
Sbjct: 949 RNRDYSLGITKLLEMKRDGVEPDHQV 974



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 11/315 (3%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T   +L ++ +     E   +   M   G+L     Y  M++L   N +   V  M+ E+
Sbjct: 694  TVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM 753

Query: 202  K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +     PD+V  N  L       + +   + +  + +  ++PD  +Y+TL  +Y +   P
Sbjct: 754  EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRP 813

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            E+  T L EM KR       +Y  LL+        ++   ++++M +   ++N + Y  +
Sbjct: 814  EEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMM 873

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            +          KAE++    +           +IL+ +Y      + AE   N L +  +
Sbjct: 874  MKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNL 933

Query: 381  KPCYTTWELLTWGYLKKGQ----MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +     +  +   YL+       + K+LE  +  +       PDH++ T+          
Sbjct: 934  EISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVE------PDHQVWTSFIRAASLCEQ 987

Query: 437  IDGAEHLLVTLRNAG 451
             D A  LL +L++ G
Sbjct: 988  TDDAILLLKSLQDCG 1002



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 54/292 (18%), Positives = 109/292 (37%), Gaps = 75/292 (25%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK--AA 264
           P V  +N  +   A     + A +    ++   I+PD +S++TL +   K        A 
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             L E+ +   R + + Y++L+S  +     D+ + ++++M++   + +   Y  ++S  
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            + G+ ++A                                   E  +  LV KG +P  
Sbjct: 179 GRCGKAQEA-----------------------------------ELMFKELVEKGFQPDA 203

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+  L + + K+G +E+V    ++             L+ A + K       DG     
Sbjct: 204 VTYNSLLYAFAKEGDVERVERVCEE-------------LVKAGFRK-------DGI---- 239

Query: 445 VTLRNAGHVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
                        YN+++  Y K G++ L   + + M+      DA T  VL
Sbjct: 240 ------------TYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVL 279


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 171/421 (40%), Gaps = 43/421 (10%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           E+G        + I+  L K  +   ALE+ E M  +  +      Y + +D + +   +
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMT-EKGVNPDVATYTIIVDRLCRAGKV 61

Query: 124 SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A+  F  + ++    +T +  AL++   +++    A  L+E+M+  G+    + YN +
Sbjct: 62  DEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTI 121

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAF--LELKKT 238
           L+     G++ +  Q    +  +  SPDVV YN  L A   +     A   F  +++   
Sbjct: 122 LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR 181

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           K+ PD I+Y+TL   + ++E  ++A    K++  +    + V Y+S+L         DE 
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 241

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLG------------------------------ 328
             ++KKM+      N A Y+ V+S   ++G                              
Sbjct: 242 EEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDM 301

Query: 329 -----EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
                + + A  + +E   I    D    NILL      N ++ A   ++ +V  G  P 
Sbjct: 302 LCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 361

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             ++ ++  G  K  ++      F + I   RK VPD        + L + G +D A+ L
Sbjct: 362 IVSYSVVLNGLCKTNKVHDARVLFDRMIE--RKLVPDVVTFNILMDGLCKAGKLDEAKDL 419

Query: 444 L 444
           L
Sbjct: 420 L 420



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 150/365 (41%), Gaps = 4/365 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   ++     A   F+++  K   PDT +  ++L    +     EAE + +KM 
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           + G       Y+ +L+ +   G + +  ++ +E+ +K  SPDV+  N  +         +
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVD 309

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   E+ K    PD ++Y+ L     K  L +KA      M    C  + V+YS +L
Sbjct: 310 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 369

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +         +   ++ +M+      +   +  ++  L K G+ ++A+++ D     +  
Sbjct: 370 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVL 429

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D      L+       + + A   +  +V KG         ++  G  ++G++ + L  
Sbjct: 430 PDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLF 489

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           FK  + S  ++ PD    T   N L E G +D A      +  +G     + YN+L+   
Sbjct: 490 FKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549

Query: 466 AKAGK 470
            K G+
Sbjct: 550 RKQGR 554


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 14/344 (4%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD M    T +++LH Y  + +  EA   ++KM   G     + Y+ ++N    NG+  
Sbjct: 241 MPDCM----TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 296

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + K+   PD+ TY   L     +     +EK F  + +  + PD I+Y+TL 
Sbjct: 297 EARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
                    ++A   L  M     + + V Y +L++ Y  +   D+ L ++K+M+S    
Sbjct: 357 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 416

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMA 368
            N   Y  ++  L        A+ +Y    SI+ +G   +    NI+L      N  + A
Sbjct: 417 PNIITYNIILQGLFHTRRTAAAKELY---VSITKSGTQLELSTYNIILHGLCKNNLTDEA 473

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
              +  L    ++    T+ ++    LK G+M++  + F  A  S    VPD R  +   
Sbjct: 474 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLF--AAHSANGLVPDVRTYSLMA 531

Query: 429 NKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
             L EQG ++  + L +++  N     + + NS++R   + G +
Sbjct: 532 ENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 575



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 17/287 (5%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQ 196
           T + LL     +K++++A + ++ +M+E G +     YN++L        S   L+ +  
Sbjct: 129 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHM 188

Query: 197 MLQELKKNTSPDVVTYNLWLAA----------CASQNDKETAEKAFLELKKTKIDPDWIS 246
           M  +    + PDVV+YN  L             A   DK  A +    + K  + PD ++
Sbjct: 189 MADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDK--AMEVLNTMVKNGVMPDCMT 246

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+++   Y     P++A  TLK+M       N V YSSL++     G   E  +I+  M 
Sbjct: 247 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 306

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
               + + A Y  ++    K G   ++E ++D    I    D    N L+       +++
Sbjct: 307 KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 366

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            A      +V+ G+KP   T+  L  GY +  +M+  L  FK+ + S
Sbjct: 367 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS 413



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 14/268 (5%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNG----- 189
           PD  S   LL       +S EA  L+  M++      P   + YN +LN +   G     
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKL 220

Query: 190 ---QLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
               +DK  ++L  + KN   PD +TYN  L    S    + A     +++   ++P+ +
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 280

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +YS+L +   K     +A      M KR    +   Y +LL  +   G   E  +++  M
Sbjct: 281 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLM 340

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           + +  K +   Y  +I      G+ ++A  +     S+    D      L+  Y   +++
Sbjct: 341 VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 400

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWG 393
           + A + +  +V+ G+ P   T+ ++  G
Sbjct: 401 DDALALFKEMVSSGVSPNIITYNIILQG 428


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ Y + K   EA 
Sbjct: 221 VSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREAR 280

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
            L+++M+E G L   + Y+ +L++Y+ N +  +   +  E+K+ N + D+ T N+ +   
Sbjct: 281 LLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY 340

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A++ F  L+K  I+P+ +SY+T+  +Y + EL  +A    + M+++   +N 
Sbjct: 341 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNV 400

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++++ +Y      ++   + ++M S   + N   Y+ +IS   K G+ ++A  ++ +
Sbjct: 401 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 460

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L     K G+
Sbjct: 461 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA----KAGR 516

Query: 400 MEKVLECFKKAIGS 413
            E+    F++A  S
Sbjct: 517 TEEATWVFRQAFES 530



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D+  ++  +  A+  F +L      P+  S   +L  Y + +   EA  L   M   
Sbjct: 335 IMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 394

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
              +  + YN M+ +Y    + +K   ++QE++ +   P+ +TY+  ++        + A
Sbjct: 395 DIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRA 454

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMEL-----------------PEKAATTLKEME 271
              F +L+ + ++ D + Y T+   Y ++ L                 P + A T+    
Sbjct: 455 ATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 514

Query: 272 KRTCR--------------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            RT                K+   +  +++LY+       V+ +++KM +     +    
Sbjct: 515 GRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVI 574

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             V+++  K  EFEKA+ +Y E +         V   +L+ Y ++   EM ES + RL
Sbjct: 575 AMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRL 632



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/325 (18%), Positives = 144/325 (44%), Gaps = 8/325 (2%)

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           E  +      YN +L   +   Q D    +  E+++   +PD  TY+  + +   +   +
Sbjct: 148 EAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFD 207

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +A     ++++ ++  D + YS L  L  ++    KA +    +++     + VAY+S++
Sbjct: 208 SALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMI 267

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           ++Y       E   + K+M       N   Y+ ++S  V+  +F +A +++ E + ++  
Sbjct: 268 NVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCA 327

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++  Y   + ++ A+  +  L    I+P   ++  +   Y +     + +  
Sbjct: 328 LDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHL 387

Query: 407 FK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
           F+      + + V  +  +   Y K  E    + A +L+  +++ G     I Y++++  
Sbjct: 388 FRLMQRKDIEQNVVTYNTMIKIYGKTMEH---EKATNLVQEMQSRGIEPNAITYSTIISI 444

Query: 465 YAKAGKM--PLIIVERMQKDNVQMD 487
           + KAGK+     + ++++   V++D
Sbjct: 445 WGKAGKLDRAATLFQKLRSSGVEID 469


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 161/372 (43%), Gaps = 22/372 (5%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRE-------------LRKLKRYKHALEVCEWMELQYDI 103
           + MR+ +E G  V   +  R  +E              ++LK++    E+ EW+  Q+  
Sbjct: 79  MMMREIEESGSAVSILKTQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWW 138

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEA 161
                D+ + +    K+   S AE   + +  K   P   S  AL+ +Y + K+  +AEA
Sbjct: 139 NFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEA 198

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLWLA 217
           +  +M   G     + Y  +L  ++   +  +   + ++L    + +  PD   +++ + 
Sbjct: 199 VFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIY 258

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 D   A K F ++ +  I    +++++L S     +   + ++   +M++   + 
Sbjct: 259 MYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYK---EVSSIYDQMQRTALKP 315

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V+YS L+  Y     ++E L ++++M+    +     Y  +I +    G  E+A  ++
Sbjct: 316 DVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVF 375

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
                     D      ++ AY+N + ++ AE F+ R+   G+KP    +  L  GY K 
Sbjct: 376 KAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435

Query: 398 GQMEKVLECFKK 409
             +E+V+  +++
Sbjct: 436 NNVERVMRVYER 447



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 126/305 (41%), Gaps = 43/305 (14%)

Query: 126 AENFFENLPDKMRG---PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE+L ++ R    PD      +++ Y +    A+A  L  +MSE G     + +N 
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL----- 235
           +++   +  ++  +   +Q  +    PDVV+Y+L + A      +E A   F E+     
Sbjct: 291 LMSFETNYKEVSSIYDQMQ--RTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGV 348

Query: 236 ------------------------------KKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                                         ++ +++PD  SY+T+   Y+     + A  
Sbjct: 349 RPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEK 408

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             + +++   + N V Y +L+  Y+ +   + V+R++++M     + N   YT ++    
Sbjct: 409 FFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHG 468

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGIKPCY 384
           +  +F  A   + E E+     D +  NILL+ A     Q E  E   N  +    KP  
Sbjct: 469 RNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDG 528

Query: 385 TTWEL 389
           TT+ L
Sbjct: 529 TTYGL 533



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 142/360 (39%), Gaps = 53/360 (14%)

Query: 173 KCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNT--SPDVVTYNLWLAACASQNDKET 227
           K PLP + +L   +   QL K   V ++L+ L+     +   + + + + A     D   
Sbjct: 101 KEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSR 160

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE+    + K    P  IS + L   Y + +   KA    + M+      + V Y  +L 
Sbjct: 161 AERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILK 220

Query: 288 LYTNMGYKDEVLRIWKKMMS---LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
            +       E   I++ +++      K +   +  +I    K G++ +A  ++ +   +S
Sbjct: 221 SFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQ---MS 277

Query: 345 GTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
             G P      N L++   N  ++    S Y+++    +KP   ++ LL   Y K  + E
Sbjct: 278 ERGIPLSTVTFNSLMSFETNYKEVS---SIYDQMQRTALKPDVVSYSLLIKAYGKARREE 334

Query: 402 KVLECFKKAI-GSVRKWVPDHRLITAAY--NKLEEQG----------------------- 435
           + L  F++ +   VR     + ++  A+  + L E+                        
Sbjct: 335 EALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMV 394

Query: 436 -------DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQ 485
                  D+DGAE     ++  G   +  +Y +L++ Y+K   +  +  + ERM+   V+
Sbjct: 395 LAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVE 454


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 160/371 (43%), Gaps = 24/371 (6%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G D    ++ S  +    A+A  + E M     +   + YN ++N   + G+  K   + 
Sbjct: 9   GGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLF 68

Query: 199 QELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           Q +K  K   PD  TYN  ++   S  + E A K   E++   I  +  +YS++    +K
Sbjct: 69  QSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVK 128

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
              PE++   L+EM    C  +  A++ ++  +      ++   +++ M+    K ++  
Sbjct: 129 EAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVS 188

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESF 371
           Y  +I  L K+G+ +++  I  E  ++   G   VPN+     L+       +LE A   
Sbjct: 189 YHILIHGLAKIGKLDESLKILSEM-AMRAAG--YVPNVITFSTLIHGLCRTGELEKALEV 245

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  ++  G KP   T+  L  G  +  ++ +  E F+K     +  +P   +   AYN L
Sbjct: 246 FGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM---TQACIPPDAV---AYNSL 299

Query: 432 ----EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKMPLI--IVERMQKDN 483
                ++G +D AE L   +     +   I  +N+L+  + K GK+     +V  M    
Sbjct: 300 IAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG 359

Query: 484 VQMDAETQKVL 494
           +  D  T ++L
Sbjct: 360 LAADTCTYRIL 370



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 126/309 (40%), Gaps = 17/309 (5%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           +  N +++   +    + A EV + M E  Y    VS  Y + +  ++KI  L  +    
Sbjct: 152 FAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVS--YHILIHGLAKIGKLDESLKIL 209

Query: 131 ENLPDKMRG--PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLY 185
             +  +  G  P+  T S L+H   +  +  +A  +   M E G   C P  Y +   L 
Sbjct: 210 SEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG---CKPNKYTYT-TLI 265

Query: 186 ISNGQLDKVPQMLQELKKNTS----PDVVTYNLWLAACASQNDKETAEKAFLELKK-TKI 240
               + +KV Q  +  +K T     PD V YN  +A    +   + AEK + E+     +
Sbjct: 266 AGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGL 325

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P  ++++TL   + K+    +A   + EM  +    +   Y  L++  +     DE L 
Sbjct: 326 QPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALE 385

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           ++K+M      ++       +  L K G  ++A  +++         +P    IL  + I
Sbjct: 386 VYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLI 445

Query: 361 NRNQLEMAE 369
              ++E A+
Sbjct: 446 KLGRVEDAQ 454



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 115/282 (40%), Gaps = 9/282 (3%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ---YDIKLVSGDYAVHLDLISKI 120
           E G+       + ++  L K+ +   +L++   M ++   Y   +++    +H   + + 
Sbjct: 179 ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHG--LCRT 236

Query: 121 RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
             L  A   F ++ +    P+  T + L+    + +K  +A  L EKM++       + Y
Sbjct: 237 GELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAY 296

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELK 236
           N ++  Y   G +D+  ++ +E+       P +VT+N  +           A +   E+ 
Sbjct: 297 NSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMG 356

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              +  D  +Y  L +   +    ++A    K+M ++    + V+  S +      G  D
Sbjct: 357 TKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNID 416

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           +   +++      A  N   +  +  SL+KLG  E A+ + +
Sbjct: 417 QAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 145/332 (43%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T S L+  + + K+  EA+ ++E+M   G     + Y  +++ ++  G   +  ++ +E 
Sbjct: 308 TYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEM 367

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L +    ++ TYN  +       D E A+    E+    I PD  +Y+ +   Y+K +  
Sbjct: 368 LARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNT 427

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +    L EM+K            +++     G  ++  R+++ M+SL  K N   YT +
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I   V+ G F++A  I    +      D    N ++       ++E A+ +   ++ +G+
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP   T+  L  GY K G+M+     FK+ +G      P+  + TA  +   ++G    A
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGC--GIAPNDVVCTALIDGYCKEGSTTEA 605

Query: 441 EHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             +    L  + H     Y++L+    + GK+
Sbjct: 606 TSIFRCMLGRSVHPDVRTYSALIHGLLRNGKL 637



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/389 (20%), Positives = 154/389 (39%), Gaps = 36/389 (9%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC  +++   ++    +A  + E M   G     + Y  ++  ++  G+  +  ++L+ +
Sbjct: 448 TCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM 507

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK   PDV+ YN  +         E A+   +E+ +  + P+  +Y  L   Y K    
Sbjct: 508 DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEM 567

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    KEM       N V  ++L+  Y   G   E   I++ M+      +   Y+ +
Sbjct: 568 QVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSAL 627

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L++ G+ + A  +  E+       D    N +++ +  +  +  A   +  +  KGI
Sbjct: 628 IHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGI 687

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---------------------------- 412
            P   T+  L  G  K G++E+  E F    G                            
Sbjct: 688 SPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFR 747

Query: 413 -----SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
                +++   PD  + +A  +   ++G+ + A  L +     G  ST   N+L+  + K
Sbjct: 748 LFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCK 807

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
           +GK+     ++E M   +V+ D  T  +L
Sbjct: 808 SGKVIEANQLLEDMVDKHVKPDHVTYTIL 836



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 148/351 (42%), Gaps = 12/351 (3%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           C+ LL   ++  K          M E   L     Y H++N +   G   +  ++L E++
Sbjct: 204 CNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEME 263

Query: 203 -KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            K  SP +VTYN+ +       + + A +    + K  +  D  +YS L   + K +   
Sbjct: 264 EKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCT 323

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   L+EM  +  +   VAY++L+  +   G   E  R+ ++M++   K+N   Y  ++
Sbjct: 324 EAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALV 383

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
             + K G+ EKA+ + +E   +    D +  N ++  Y+        +   + +    + 
Sbjct: 384 KGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLV 443

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T  ++  G  + G +E     F+  +    K  P+  + T       ++G    A 
Sbjct: 444 PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVK--PNAVIYTTLIKGHVQEGRFQEAV 501

Query: 442 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKMP------LIIVERMQKDNV 484
            +L  +   G V  ++  YNS++    K+ KM       + ++ER  K NV
Sbjct: 502 RILKVMDKKG-VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNV 551



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/360 (19%), Positives = 138/360 (38%), Gaps = 39/360 (10%)

Query: 122  GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
            G+  A    E +  K   P+  T +AL++   +  +   A  L + +   G     + Y 
Sbjct: 671  GIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYA 730

Query: 180  HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE---- 234
             +++ Y  +G L K  ++  E+  K   PD   Y+  +  C  + + E A   FLE    
Sbjct: 731  TIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQK 790

Query: 235  ------------------------------LKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
                                          +    + PD ++Y+ L   + K    ++A 
Sbjct: 791  GFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAE 850

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
                +M+KR    N + Y++LLS Y   G + E+  ++ +M++   + +   ++ +I + 
Sbjct: 851  QFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAH 910

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            +K G+  K   + D+     G     V ++L+     +  +        ++  +G+    
Sbjct: 911  LKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSL 970

Query: 385  TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             T   L   + K G+M+      K  +    KWVPD   +    N  ++  D + A   L
Sbjct: 971  ATCSTLVRCFHKAGKMDGAARVLKSMVRF--KWVPDSTELNDLINVEQDSTDSENAGDFL 1028



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 149/366 (40%), Gaps = 19/366 (5%)

Query: 140 PDT-C-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  C ++++    +++K  EA+  + +M E G       Y  +++ Y  +G++    + 
Sbjct: 514 PDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRY 573

Query: 198 LQE-LKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            +E L    +P DVV   L    C   +  E A   F  +    + PD  +YS L    +
Sbjct: 574 FKEMLGCGIAPNDVVCTALIDGYCKEGSTTE-ATSIFRCMLGRSVHPDVRTYSALIHGLL 632

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +    + A   L E  ++    +   Y+S++S +   G   +  ++ + M       N  
Sbjct: 633 RNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNII 692

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFY 372
            Y  +I+ L K GE E+A  ++D    I G G   +      ++  Y     L  A   +
Sbjct: 693 TYNALINGLCKAGEIERARELFD---GIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
           + +  KG+ P    +  L  G  K+G  EK L  F   + SV+K       + A  +   
Sbjct: 750 DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF---LESVQKGFASTSSLNALMDGFC 806

Query: 433 EQGDIDGAEHLLVTLRNAGHVSTE--IYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDA 488
           + G +  A  LL  + +  HV  +   Y  L+  + K G  K        MQK N+  +A
Sbjct: 807 KSGKVIEANQLLEDMVDK-HVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNA 865

Query: 489 ETQKVL 494
            T   L
Sbjct: 866 LTYTAL 871



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 5/239 (2%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAEN----FFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
           +K V  D  V+  LI   R   + E     F E++        + +AL+  + ++ K  E
Sbjct: 754 LKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIE 813

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           A  L+E M +       + Y  +++ +   G L +  Q   ++ K+N  P+ +TY   L+
Sbjct: 814 ANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLS 873

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                  +      F E+    I+PD +++S +   ++K     K    + +M K+    
Sbjct: 874 GYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNV 933

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           ++     L+       +  EVL++ +K+      ++ A  + ++    K G+ + A  +
Sbjct: 934 SKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARV 992


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 149/330 (45%), Gaps = 20/330 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF-EN 132
           +  +V+ L+ +      L + +W + Q    +    YA+  D ++KIR     ++ F E 
Sbjct: 182 MTHVVQALKIINDADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEM 241

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-----CPL---PYNHMLNL 184
           + D  +G  +     +  +Q+   A+AE L  ++S C F K     C +    YN ++  
Sbjct: 242 VQDSSKGGISSVYAYNRVIQHL--AKAEKL--ELSFCCFKKVQDSGCKIDTQTYNALITS 297

Query: 185 YISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           +++ G   K  ++ + ++    S D  TY L + + A     + A K F E+K+ KI P 
Sbjct: 298 FLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRP- 356

Query: 244 WISYSTLTSLYIKMELPEKAATTLK---EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             S+   +SL   M    +  T++K   EM+    R +   Y SL+  YT  G  D  LR
Sbjct: 357 --SFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALR 414

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W +M     + N   YT +I S  K G+ + A +I+ + +       P   + LL  + 
Sbjct: 415 LWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHA 474

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
              Q++ A   YN +   G+KP  +T+  L
Sbjct: 475 ASGQVDSAMKLYNSMTNAGLKPGLSTYTAL 504



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 104/256 (40%), Gaps = 2/256 (0%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +M+Q+  K     V  YN  +   A     E +   F +++ +    D  +Y+ L + ++
Sbjct: 240 EMVQDSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFL 299

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
              LP KA    + M+   C  +   Y  ++      G  D   +++++M     + +  
Sbjct: 300 NKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFG 359

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            ++ ++ S+ K G  + +  IY E +         +   L+ +Y    +L+ A   ++ +
Sbjct: 360 IFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEM 419

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
              G +P Y  + L+   + K G+++     FK    +   ++P     +         G
Sbjct: 420 KKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKA--GFLPTPSTYSCLLEMHAASG 477

Query: 436 DIDGAEHLLVTLRNAG 451
            +D A  L  ++ NAG
Sbjct: 478 QVDSAMKLYNSMTNAG 493


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 14/314 (4%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           GD    LDL  ++  L+ A   F           T + +++   +  + +EA   ++   
Sbjct: 553 GDSEKALDLFDQMLSLNIAPTDF-----------TFNTIINGLCKVGQMSEARDKLKNFL 601

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           E GF+   + YN +++ +I  G +D    + +E+ +   SP+VVTY   +      N  +
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 661

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   E+++  ++ D  +YS L   + K    E A     E+ +     NR+ Y+S++
Sbjct: 662 LALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 721

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S + ++   +  L  +KKM++     +   YT +I  L+K G    A ++Y E  S    
Sbjct: 722 SGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIV 781

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    ++L+    N+ QLE A      +  K + P    +  L  GY ++G +++    
Sbjct: 782 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL 841

Query: 407 FKKAIGSVRKWVPD 420
             + +   R  VPD
Sbjct: 842 HDEMLD--RGLVPD 853



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 135/352 (38%), Gaps = 35/352 (9%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
           K  EA +L++ M   G +   + YN M+  +   G +D    +  + L ++  P+VVTY+
Sbjct: 484 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 543

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + +     + D E A   F ++    I P   +++T+ +   K+    +A   LK   + 
Sbjct: 544 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 603

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + + Y+S++  +   G  D  L ++++M       N   YT +I+   K    + A
Sbjct: 604 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 663

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
               DE        D    + L+  +  R  +E A+  +  L+  G+ P    +  +  G
Sbjct: 664 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 723

Query: 394 YLKKGQMEKVLECFKKAIGS---------------------------------VRKWVPD 420
           +     ME  L  +KK I                                    +  VPD
Sbjct: 724 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPD 783

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
                   N L  +G ++ A  +L  + R     S  IYN+L+  Y + G +
Sbjct: 784 IITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNL 835



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/344 (18%), Positives = 141/344 (40%), Gaps = 37/344 (10%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
           +KL +G Y++ +  + K    +      E + ++   P   T ++++ + V      EA 
Sbjct: 291 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEAL 350

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAAC 219
            L E+M  CG     +    ++  Y + G LD    +  ++ ++   P+ VTY++ +  C
Sbjct: 351 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGC 410

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA--------------- 264
            +  + E A + + ++K   I P   + ++L   Y+K  L E+A+               
Sbjct: 411 CNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIF 470

Query: 265 -------------------TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
                              + L  M  +    N V+Y+ ++  +   G  D    ++  M
Sbjct: 471 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 530

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           ++   K N   Y+ +I    K G+ EKA +++D+  S++        N ++       Q+
Sbjct: 531 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 590

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             A       + +G  P   T+  +  G++K+G ++  L  +++
Sbjct: 591 SEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 634



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 148/384 (38%), Gaps = 57/384 (14%)

Query: 137 MRGPDT---CSALLHSYVQNKKSAEAEALMEKMSECG----FLKCPLPYNHMLNLYISNG 189
           MR P+T      LL+ YV           ++ +  C     F      +N++LN YI   
Sbjct: 145 MRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRAN 204

Query: 190 QL-------------DKVP---------------QMLQELK--------KNTSPDVVTYN 213
           ++             D +P                M+ EL+        +    D  T +
Sbjct: 205 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 264

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + + AC  +   E AE+ F E K+  +  D  +YS +     K          L+EM++R
Sbjct: 265 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 324

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               +   ++S++      G   E LR+ ++M++    MN    T ++      G  + A
Sbjct: 325 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 384

Query: 334 ENIYDEWESISGTGDPRVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
            N++++      T D   PN     +L+    N   +E A   Y ++   GI P      
Sbjct: 385 LNLFNKI-----TEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 439

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
            L  GYLK    E+  + F +A+      +  + ++ +    L + G +D A  LL  + 
Sbjct: 440 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSW---LCKGGKMDEACSLLDNMV 496

Query: 449 NAGHVSTEI-YNSLLRTYAKAGKM 471
           N G V   + YN ++  + + G M
Sbjct: 497 NQGMVPNVVSYNDMILGHCRKGNM 520



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 6/238 (2%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA    R+  E G + +      ++    K  R   AL+  + M  +  ++L    Y+  
Sbjct: 627 SALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR-EKGLELDVTAYSAL 685

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K R + SA++ F  L +    P+    ++++  + ++  + EA  +  K      
Sbjct: 686 IDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF-RDLNNMEAALVWYKKMINDR 744

Query: 172 LKCPL-PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAE 229
           + C L  Y  +++  +  G+L     +  E L K   PD++T+++ +    ++   E A 
Sbjct: 745 IPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENAR 804

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           K   E+ +  + P  + Y+TL + Y +    ++A T   EM  R    + V Y  L++
Sbjct: 805 KILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 862


>gi|91806413|gb|ABE65934.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 279

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116
           + + +  ++G+ V    L  +++ LR   +   ALE   WM  +    L S DYA  L L
Sbjct: 102 LLLEEMDKKGNKVSPPGLRDLIKNLRDSNQLSKALEASTWMCQKKVFNLFSEDYATRLHL 161

Query: 117 ISKIRGLSSAENFFE-NLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKC 174
             K+ GL  AENFFE ++P+ M+       LL  Y ++  + ++AEA+ EKM E G    
Sbjct: 162 TEKVLGLEEAENFFESSIPENMKDYSVYDTLLSCYARSSNTQSKAEAVFEKMRELGLQSK 221

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACA 220
             P+N +++LY   G+L  V  +L ++K KN  PD+VT N  L A A
Sbjct: 222 LSPFNSLISLYSGQGKLSVVNILLCDMKHKNIEPDIVTRNNVLRANA 268



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY-DEWESIS 344
           +SLY   G  ++V R+W K  +   K N+ E+  +I SL+KLG+ + AE IY +EWE   
Sbjct: 1   MSLYGEAGEIEDVHRVWDKYKATRQKDNE-EFRTLIGSLLKLGDTKGAEKIYYNEWECSG 59

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNR 374
              D R+P++L++ Y  +  +  A+   N+
Sbjct: 60  LEFDNRIPDMLVSGYREKGMVMKADKLVNK 89


>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 841

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 167/406 (41%), Gaps = 54/406 (13%)

Query: 111 AVHLDLISKIRGLSSAENFF------ENLPDK--MRGPDTCSALLHSYVQNKKSAEAEAL 162
            + L +  K R    AE FF      EN  D        T + ++ +Y ++ +  EA   
Sbjct: 260 GIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASET 319

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222
            ++M E G +   + +N M+++Y +NGQ  +V  +++ +K + +PD  TYN+ ++     
Sbjct: 320 FKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMKFHCAPDTRTYNILISLHTKN 379

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           ND E A   F E+K   + PD +SY TL   +    + ++A   + EM+      +    
Sbjct: 380 NDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQ 439

Query: 283 SSLLSLYTNMGYKDEVLR---IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           S+L  +Y     + E+L     W K   +   M+   Y+  I +  + G   +AE ++  
Sbjct: 440 SALTRMYI----EAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFIC 495

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW------- 392
            + ++        N+++ AY      E A   +  +++ G+ P   T+  L         
Sbjct: 496 CQEVNKRTVLEY-NVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADM 554

Query: 393 ----------------------------GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
                                        ++K GQ+    E +K+ +       PD  + 
Sbjct: 555 PDKAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVE--YNIEPDVVVY 612

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
               N   + G++  A   +  ++ AG   ++ IYNSL++ Y K G
Sbjct: 613 GVLINAFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVG 658



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 149/317 (47%), Gaps = 17/317 (5%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE----AEALME 164
           +Y V +      +    A   FE++      PD C+   ++ VQ   SA+    A+  +E
Sbjct: 506 EYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCT--YNTLVQILASADMPDKAKCYLE 563

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQN 223
           KM E G++   +PY  +++ ++  GQL+   ++ +E+ + N  PDVV Y + + A A   
Sbjct: 564 KMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTG 623

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV--A 281
           + + A      +K+  I  + + Y++L  LY K+   ++A    +++  R+C + +    
Sbjct: 624 NVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKL-LRSCNETQYPDV 682

Query: 282 YSS--LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           Y+S  +++LY+      +   I++ M     + N+  +  ++    K G FE+A  I  +
Sbjct: 683 YTSNCMINLYSQRSMVRKAEAIFESMKQR-REANEFTFAMMLCMYKKNGRFEEATQIAKQ 741

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
              +    DP   N +L  Y    + + A   +  +V+ GI+P  +T++ L    +K G 
Sbjct: 742 MREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILIKLGM 801

Query: 400 MEKVLECFKKAIGSVRK 416
            +K +    + I  +RK
Sbjct: 802 SKKAV----RKIEEIRK 814



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 93/202 (46%), Gaps = 6/202 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQML---QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           Y+  ++ Y   G L +  ++    QE+ K T   V+ YN+ + A       E A + F  
Sbjct: 473 YSANIDAYGERGYLSEAERVFICCQEVNKRT---VLEYNVMIKAYGISKSCEKACELFES 529

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    + PD  +Y+TL  +    ++P+KA   L++M +     + + Y +++S +  +G 
Sbjct: 530 MMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQ 589

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            +    ++K+M+    + +   Y  +I++    G  ++A +  +  +      +  + N 
Sbjct: 590 LNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPENSVIYNS 649

Query: 355 LLAAYINRNQLEMAESFYNRLV 376
           L+  Y     L+ AE+ Y +L+
Sbjct: 650 LIKLYTKVGYLDEAEAIYRKLL 671



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 12/235 (5%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM ++  +     Y +L+ +Y+  G K   L    KM  +  + ++     V+    K  
Sbjct: 211 EMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAR 270

Query: 329 EFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           EF+KAE  + +W       D  V       N ++  Y    Q++ A   + R++ +GI P
Sbjct: 271 EFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVP 330

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +   Y   GQ  +V    K          PD R      +   +  DI+ A  
Sbjct: 331 TTVTFNTMIHVYGNNGQFGEVTSLMKTMKFHC---APDTRTYNILISLHTKNNDIERAGT 387

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYA--KAGKMPLIIVERMQKDNVQMDAETQKVL 494
               ++ AG     + Y +LL  ++     K    ++  M  ++V++D  TQ  L
Sbjct: 388 YFKEMKGAGLKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQSAL 442



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 6/251 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A   + K +E G+         ++    KL +   A EV + M ++Y+I+     Y V +
Sbjct: 558 AKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEM-VEYNIEPDVVVYGVLI 616

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKM-SECGF 171
           +  +    +  A ++ E + +     ++   ++L+  Y +     EAEA+  K+   C  
Sbjct: 617 NAFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNE 676

Query: 172 LKCPLPY--NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229
            + P  Y  N M+NLY     + K   + + +K+    +  T+ + L         E A 
Sbjct: 677 TQYPDVYTSNCMINLYSQRSMVRKAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEAT 736

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +   ++++ +I  D +SY+++  LY      ++A  T KEM     + +   + SL ++ 
Sbjct: 737 QIAKQMREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTIL 796

Query: 290 TNMGYKDEVLR 300
             +G   + +R
Sbjct: 797 IKLGMSKKAVR 807


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 38/366 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +++   QN +S EA  L+E+M   G       Y  ++  +   G +    + L+ +
Sbjct: 457 TYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENM 516

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K N  PD+  YN  +   ++    E AE+ + +++K  + PD  +YS L   Y K    
Sbjct: 517 TKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNL 576

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS------------- 307
           EKA   L++M     + N   Y+ LL  Y      ++V  I + M+              
Sbjct: 577 EKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIV 636

Query: 308 ------------LFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISG 345
                        F  + + E          Y+ +IS L K+ + EKA  + DE      
Sbjct: 637 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGL 696

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                  N L+  +     +  A + ++ ++ KG+ P   T+  L  G  K G +    +
Sbjct: 697 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFD 756

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
            +K  +   R   PD  +         +  D++ A  L   + N G+    ++++L+R +
Sbjct: 757 LYKDMLD--RGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGF 814

Query: 466 AKAGKM 471
            K G++
Sbjct: 815 CKRGRL 820



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 20/369 (5%)

Query: 118 SKIRGLSS------AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           S I+GLS+      AE ++  +  +   PD  T S L+H Y + +   +A+ L+++M   
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNS 589

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETA 228
           G       Y  +L  Y  +   +KV  +LQ  L     PD   Y + +   +   + E A
Sbjct: 590 GLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVA 649

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
                E++K  + PD   YS+L S   KM   EKA   L EM K       V Y++L+  
Sbjct: 650 FMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDG 709

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G       ++  +++     N   YT +I    K G+   A ++Y +        D
Sbjct: 710 FCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPD 769

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLE 405
             V N+L     +   LE A      +  +G     + +  L  G+ K+G++   EK+L 
Sbjct: 770 AFVYNVLATGCSDAADLEQALFLTEEMFNRGYAH-VSLFSTLVRGFCKRGRLQETEKLLH 828

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL--RNAGHVSTEIYNSLLR 463
                    R+ VP+ + +     +  + G +  A  +   L  + A   ST+ ++ L  
Sbjct: 829 VMMD-----REIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFT 883

Query: 464 TYAKAGKMP 472
                G +P
Sbjct: 884 DMINKGLIP 892



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 1/223 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+  L  +      D   ++ +E+++ + + + VTYN+ ++        E A     E+ 
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +Y  L +   K    ++A   L EM     + N V Y++L+  +   G   
Sbjct: 308 DYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAA 367

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E   I  +M+S   + N   Y  +I  L K+G+  +A  + +E   +    D    + L+
Sbjct: 368 EAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLM 427

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             +      + A    N +   GI P   T+ ++  G  + G+
Sbjct: 428 QGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGE 470



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 142/367 (38%), Gaps = 14/367 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALM 163
           Y+  L+   K R   +A+  FE    +MR  D      T + ++    ++    EA    
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFE----EMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFK 303

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQ 222
           E+M + G       Y  ++N     G+L +   +L E+      P+VV Y   +     +
Sbjct: 304 EEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKE 363

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                A     E+    + P+ I Y  L     K+    +A+  L EM K   R +   Y
Sbjct: 364 GKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTY 423

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
             L+  +     KD    +  +M +     N   Y  +I+ L + GE ++A N+ +E  S
Sbjct: 424 HPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMIS 483

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                +  +   L+  +     + +A      +    + P    +  L  G    G++E+
Sbjct: 484 EGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEE 543

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
             E + +     R  VPD    +   +   +  +++ A+ LL  + N+G   + + Y  L
Sbjct: 544 AEEYYAQV--QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDL 601

Query: 462 LRTYAKA 468
           L  Y K+
Sbjct: 602 LEGYFKS 608


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 148/361 (40%), Gaps = 9/361 (2%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE----AEALMEKMSECGF 171
           ++ K   L  AE  F  +  +   P  C+   ++ +    SAE    A  L+E++ E G 
Sbjct: 290 VLCKAGRLGEAEELFGQMEAERDVP--CAYAYNTMIMGYGSAERFDDAYKLLERLRERGC 347

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
           +   + +N +L       ++D+   +   +KK+  P++ TYN+ +           A K 
Sbjct: 348 IPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKI 407

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
             E++   + P+ +S + +     K    E+A    +   +R C  N V Y SL+     
Sbjct: 408 RDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGK 467

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  D+  R+++KM+      N   YT +I +    G  E    IY E     G  D  +
Sbjct: 468 KGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTL 527

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N  +       ++E   + +  + + G  P   ++ +L  G  K GQ  +    F+   
Sbjct: 528 LNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAM- 586

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGK 470
            S + +  D R   A  + L + G +D A  +L  ++    H +   Y S++   AK  +
Sbjct: 587 -SQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDR 645

Query: 471 M 471
           +
Sbjct: 646 L 646



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 169/417 (40%), Gaps = 47/417 (11%)

Query: 136 KMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGF-LKCPLPYNHMLNLYISNGQLDK 193
           K R P +  + L+ +  + ++   A  L+ +M + G+ +  PL +  ++      GQ++ 
Sbjct: 171 KFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPL-FTTLVRALAREGQMEP 229

Query: 194 VPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT- 251
              ++ E+K +   PD+V YN+ +         + A K F ELK   + PD +SY+++  
Sbjct: 230 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289

Query: 252 ------------SLYIKME----LP------------------EKAATTLKEMEKRTCRK 277
                        L+ +ME    +P                  + A   L+ + +R C  
Sbjct: 290 VLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIP 349

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V+++S+L+        DE L ++  +M   AK N + Y  +I  L   G   +A  I 
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLF-DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIR 408

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           DE E      +    NI++      NQLE A   +     +G  P   T+  L  G  KK
Sbjct: 409 DEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKK 468

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAGHVSTE 456
           G+++     F+K + +     P   + T+        G   DG +     +R  G     
Sbjct: 469 GKIDDAYRLFEKMLDAGHDANP--IIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLT 526

Query: 457 IYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           + N+ +    KAG++     I E M+      D  +  +L   +T      E S+IF
Sbjct: 527 LLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIF 583



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 150/385 (38%), Gaps = 67/385 (17%)

Query: 48  LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS 107
           ++Y        M   KE+GH ++K  + R  R                      D+ L++
Sbjct: 491 IIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRP---------------------DLTLLN 529

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEK 165
                ++D + K   +      FE++      PD  + S L+H   +  ++ E   + + 
Sbjct: 530 ----TYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQA 585

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQND 224
           MS+ GF      YN +++    +G++DK  ++L+E+K K+  P V TY   +   A  + 
Sbjct: 586 MSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDR 645

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT---------- 274
            + A   F E K   I+ + I YS+L   + K+   ++A   L+EM K+           
Sbjct: 646 LDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 705

Query: 275 -------------------------CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
                                    C  N   YS L++    +   ++    W++M    
Sbjct: 706 LMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 765

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   YT +IS L K+G    A ++++ +++  G  D    N L+    N N+   A 
Sbjct: 766 LIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAY 825

Query: 370 SFYNRLVTKG----IKPCYTTWELL 390
             +     +G    +K C +  + L
Sbjct: 826 QVFEETRLRGCRLNVKTCISLLDAL 850



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 126/301 (41%), Gaps = 11/301 (3%)

Query: 138 RGPDTCSALLHSYVQNK-KSAEAE---ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           RG      LL++Y+    K+ E E   A+ E M   GFL     Y+ +++     GQ  +
Sbjct: 519 RGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARE 578

Query: 194 VPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              + Q + ++  + D   YN  +         + A +   E+K   + P   +Y ++  
Sbjct: 579 TSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVD 638

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K++  ++A    +E + +    N + YSSL+  +  +G  DE   I ++MM      
Sbjct: 639 GLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 698

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   +  ++ +LVK  E ++A   +   + +  + +    +IL+       +   A  F+
Sbjct: 699 NVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFW 758

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             +  +G+ P   T+  +  G  K G +      F++        +PD    +A++N L 
Sbjct: 759 QEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF--KTNGGIPD----SASFNALI 812

Query: 433 E 433
           E
Sbjct: 813 E 813



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 11/241 (4%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L +  ++    E A   +  M     R    AY+ L+         +  L + ++M  
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQD 204

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
           +  +++   +T ++ +L + G+ E A  + DE +      D  + N+ +  +     ++M
Sbjct: 205 VGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDM 264

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP---DHRLI 424
           A  F++ L   G++P   ++  + W   K G++ +  E F +      + VP    +  +
Sbjct: 265 AWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQM--EAERDVPCAYAYNTM 322

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQK 481
              Y   E     D A  LL  LR  G + + + +NS+L    K  K+   L + + M+K
Sbjct: 323 IMGYGSAER---FDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379

Query: 482 D 482
           D
Sbjct: 380 D 380


>gi|15218232|ref|NP_175000.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75268143|sp|Q9C545.1|PPR72_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g43010
 gi|12321535|gb|AAG50822.1|AC026757_3 hypothetical protein [Arabidopsis thaliana]
 gi|12323053|gb|AAG51513.1|AC068324_1 hypothetical protein [Arabidopsis thaliana]
 gi|332193817|gb|AEE31938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 257

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 4/171 (2%)

Query: 36  GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
               TL  R+ + +  K S    + +W+++G+ V+   L  +++ L   K +  ALE  +
Sbjct: 33  AANQTLPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALEASK 92

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
           WM           D A  L L++ + GL  AE  F+N+P+KMR     S LL SY +  +
Sbjct: 93  WMFKHSVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIPEKMRD---YSVLLSSYTKPVR 149

Query: 156 SAE-AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           + + AEA  +KM E GFL  P  +N M+ LY    +LD V ++L +LKKN 
Sbjct: 150 TVDKAEATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNN 200


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 11/326 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++++  ++ K  +    + ++ E G     + YN +++ Y S G +++  +++  +
Sbjct: 227 TLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAM 286

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  SP V TYN  +         E A++ F E+ ++ + PD  +Y +L     K    
Sbjct: 287 PSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDA 346

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +      +M  R    + V +SS++SL+T  G  D+ L  +  +       ++  YT +
Sbjct: 347 VETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 406

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    + G   +A N+ +E        D    N +L     R  L  A+  +N +  +G+
Sbjct: 407 IQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGL 466

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----GD 436
            P   T  +L  G+ K G ++  +E FKK      K +   +L    YN L +     GD
Sbjct: 467 FPDSYTLTILIDGHCKLGNLQNAMELFKKM---KEKRI---KLDVVTYNTLLDGFGKVGD 520

Query: 437 IDGAEHLLVTLRNAGHVSTEIYNSLL 462
           ID A+ +   + +   + T I  S+L
Sbjct: 521 IDTAKEIWADMVSKEILPTPISFSIL 546



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 4/365 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           M     +G +   Y  N ++  L K  +Y+ A EV   M L+  +   S  Y   L    
Sbjct: 283 MHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM-LRSGLSPDSTTYRSLLMEAC 341

Query: 119 KIRGLSSAENFFENLPDKMRGPD-TC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K       EN F ++  +   PD  C S+++  + ++    +A      + E G +   +
Sbjct: 342 KKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNV 401

Query: 177 PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++  Y   G + +   +  E L++  + DVVTYN  L     +     A+K F E+
Sbjct: 402 IYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM 461

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  + PD  + + L   + K+   + A    K+M+++  + + V Y++LL  +  +G  
Sbjct: 462 TERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDI 521

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D    IW  M+S         ++ ++++L   G   +A  ++DE  S S      + N +
Sbjct: 522 DTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSM 581

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  Y         E F  +++++G  P   ++  L +G++K+  M K     KK      
Sbjct: 582 IKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQG 641

Query: 416 KWVPD 420
             VPD
Sbjct: 642 GLVPD 646



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 5/285 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + +LH   + K   EA+ L  +M+E G          +++ +   G L    ++ +++
Sbjct: 437 TYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKM 496

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K K    DVVTYN  L       D +TA++ + ++   +I P  IS+S L +        
Sbjct: 497 KEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHL 556

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     EM  ++ +   +  +S++  Y   G   +     +KM+S     +   Y  +
Sbjct: 557 SEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTL 616

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I   VK     KA  +  + E   G   P V   N +L  +   NQ++ AE+   +++ +
Sbjct: 617 IYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIER 676

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           G+ P  +T+  L  G++ +  + +      + +   R + PD + 
Sbjct: 677 GVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQ--RGFSPDDKF 719



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/361 (18%), Positives = 140/361 (38%), Gaps = 35/361 (9%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN- 204
           L+ ++VQ +K  EA      +   G+       N ++   +  G ++   ++ QE+ ++ 
Sbjct: 161 LIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSG 220

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              +V T N+ + A       E       E+++  + PD ++Y+TL S Y    L E+A 
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +  M  +        Y+++++     G  +    ++ +M+      +   Y  ++   
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 340

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G+  + ENI+ +  S     D    + +++ +     L+ A  ++N +   G+ P  
Sbjct: 341 CKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 400

Query: 385 TTWELLTWGYLKKGQMEKVLE------------------------CFKKAIGSV------ 414
             + +L  GY +KG + + +                         C +K +G        
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460

Query: 415 ---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
              R   PD   +T   +   + G++  A  L   ++     +    YN+LL  + K G 
Sbjct: 461 MTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGD 520

Query: 471 M 471
           +
Sbjct: 521 I 521



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 9/235 (3%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D   K+  L +A   F+ + +K    D  T + LL  + +      A+ +   M   
Sbjct: 475 ILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 534

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKET 227
             L  P+ ++ ++N   S G L +  ++  E+  K+  P V+  N  +   C S N  + 
Sbjct: 535 EILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDG 594

Query: 228 AEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT--CRKNRVAYSS 284
             + FLE +      PD ISY+TL   ++K E   KA   +K+ME++      +   Y+S
Sbjct: 595 --EIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNS 652

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           +L  +       E   + +KM+      + + YT +I+  V      +A   +DE
Sbjct: 653 ILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDE 707


>gi|413916646|gb|AFW56578.1| hypothetical protein ZEAMMB73_703473, partial [Zea mays]
          Length = 149

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 32 KKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHAL 91
          + G  G DTLG+RLL L+Y KRSA + +++W +EG TV KY+LNR+VRELRK  R+KHAL
Sbjct: 24 RGGHAGGDTLGKRLLKLIYPKRSAVVVLQRWADEGRTVQKYQLNRVVRELRKYGRFKHAL 83

Query: 92 EV 93
          EV
Sbjct: 84 EV 85


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 156/349 (44%), Gaps = 12/349 (3%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           A LH  + +  SA A AL   +       C   +N ML    + G+  +  ++L+++ + 
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR- 144

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKA 263
             P+ VTYN  +A   ++   + A +   E++ +  I PD  +Y+TL S + K+   E A
Sbjct: 145 --PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 264 ATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                EM  K     + V Y++L+  Y ++G  D  L+  + M+     M  A Y  ++ 
Sbjct: 203 VKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMH 262

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L        A  + +E +    + D    NIL+  Y      + A   +  +  KG++ 
Sbjct: 263 ALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRA 322

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAE 441
              T+  L + + +KGQ+++    F  A   V+K + PD  +  A  N     GD++ A 
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVA---VKKGIRPDVVMYNALINSHCTGGDMERAY 379

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            ++  +        ++ YN+L+R +   G++     +++ M K  +Q D
Sbjct: 380 EIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPD 428



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 3/228 (1%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A    E +      PD  T + L++ Y +     +A  + E+MS+ G     + Y  +
Sbjct: 271 SDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSL 330

Query: 182 LNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           + ++   GQ+ +  ++    +KK   PDVV YN  + +  +  D E A +   E++K +I
Sbjct: 331 IYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRI 390

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            PD ++Y+TL   +  +   ++A T + EM KR  + + V+Y++L+S Y+  G   + LR
Sbjct: 391 PPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALR 450

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +  +MM          Y  +I  L K+ + + AEN+  E  +   T D
Sbjct: 451 VRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPD 498



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 1/228 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y   G+LD   Q  +++ ++  +  V TYNL + A         A     E++
Sbjct: 222 YNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQ 281

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    PD  +Y+ L + Y K    +KA    +EM ++  R   V Y+SL+ +++  G   
Sbjct: 282 KNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQ 341

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  R++   +    + +   Y  +I+S    G+ E+A  I  E E      D    N L+
Sbjct: 342 ETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLM 401

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             +    +L+ A +  + +  +GI+P   ++  L  GY  KG ++  L
Sbjct: 402 RGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDAL 449



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L++ + +  +  E + L     + G     + YN ++N + + G +++  +++ E+
Sbjct: 326 TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK   PD +TYN  +         + A     E+ K  I PD +SY+TL S Y      
Sbjct: 386 EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDI 445

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++L+     +   D+   + K+M++     +D+ Y  +
Sbjct: 446 KDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISL 505

Query: 321 ISSL 324
           I  L
Sbjct: 506 IEGL 509


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 200/452 (44%), Gaps = 26/452 (5%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWM----ELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           +L  +V +LR  K++   L +C+W+      Q D+ +    + + +D   +      AE 
Sbjct: 114 DLINVVVQLRLNKKWDLILLICQWILYRSSFQSDVMI----FNLVIDAYGRKSLYKMAET 169

Query: 129 FFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            +  L +    P  DT + LL +Y  +    +AEA+  +M + G     + YN  ++  +
Sbjct: 170 TYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLM 229

Query: 187 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G   +  ++ Q +K++   P   TY L +      +    A K F E++  K  P+  
Sbjct: 230 KAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNIC 289

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+ L + + +  L EKA    +++++     +  AY++L+  Y+  G+      I+  M
Sbjct: 290 TYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 349

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
             +  + + A Y  ++ +  + G  E A+ +++E + +  T   +   +LL+AY     +
Sbjct: 350 QHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDV 409

Query: 366 EMAESFYNRLVTKGIKP-CYTTWELLT-WGYLKK-GQMEKVLECFKKAIGSVRKWVPDHR 422
              E   N L   G++P  +    +L  +G L + G+ME+VL   +   G     +  + 
Sbjct: 410 AKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMES--GPYATDISTYN 467

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYA--KAGKMPLIIVER 478
           ++   Y +    G  +  E L  +L  A ++  ++  + S L  Y+  K     L I E 
Sbjct: 468 ILINIYGR---AGFFEKMEGLFQSLA-AKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEE 523

Query: 479 MQKDNVQMDAETQKVL--KITSEMPVSEVSSI 508
           M       D  T KVL    +SE  + +V+++
Sbjct: 524 MIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTV 555



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 4/246 (1%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           +E+GH    Y  N ++    +      A E+   M+     +     Y + +D   +   
Sbjct: 315 QEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQ-HMGCEPDRASYNIMVDAYGRGGL 373

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              A+  FE +      P   S   LL +Y +    A+ E ++ ++ E G        N 
Sbjct: 374 HEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNS 433

Query: 181 MLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           MLNLY   GQ  K+ ++L  ++    + D+ TYN+ +         E  E  F  L    
Sbjct: 434 MLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKN 493

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD +++++    Y + +L  K     +EM    C  +      LLS  ++    ++V 
Sbjct: 494 LKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVT 553

Query: 300 RIWKKM 305
            + + M
Sbjct: 554 TVIRTM 559



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 3/162 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGF 171
           L   SK   ++  E+    L +    PDT   +++L+ Y +  +  + E ++  M    +
Sbjct: 400 LSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPY 459

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
                 YN ++N+Y   G  +K+  + Q L  KN  PDVVT+   L A + +       +
Sbjct: 460 ATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLE 519

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
            F E+      PD  +   L S     +  E+  T ++ M K
Sbjct: 520 IFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHK 561


>gi|356533844|ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 813

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 171/400 (42%), Gaps = 54/400 (13%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  T + L+ +Y +  +  EA     KM + G     + +N M+N+  ++GQL++V  ++
Sbjct: 272 GSHTYNTLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQLEEVSLLV 331

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +++++   SP+  TYN+ ++  A  +D   A K F  +K+  ++PD +SY TL   Y   
Sbjct: 332 RKMEELRCSPNTRTYNILISLYAKHDDIGMATKYFEIMKEACLEPDLVSYRTLLYAYSIR 391

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           ++  +A   +KEM++R    ++   S+L  +Y   G  D+ L +W     +   M    Y
Sbjct: 392 KMVGEAEELVKEMDERRLEIDQYTQSALTRMYIKAGMLDQSL-LWFLRFHVAGNMTSECY 450

Query: 318 TCVISSLVKLGE----------------------------------FEKAENIYDEWESI 343
              I +  + G                                   +EKA  ++D  E  
Sbjct: 451 AASIDAYGEHGHTLEAEKVFIWSQKQKNLSVLEFNVMIKAYGIGKCYEKACQLFDSMEQH 510

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D      L+      +Q  MA+ +  ++   G+      + ++   + K GQ+E  
Sbjct: 511 GVVADRCSYTSLIQILTTSDQPHMAKPYLKKMQEAGLVSDCIPYCVVICSFAKLGQLEMA 570

Query: 404 LECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
            + + + I   R  V PD  + +   N   + G +  A   +  ++ AG   +T IYNSL
Sbjct: 571 EDIYWEMI---RHGVQPDVIVYSILINVFSDAGRVKEAISYVDEMKKAGLPGNTVIYNSL 627

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           ++ YAK              DN++   E  K+L+++ E P
Sbjct: 628 IKLYAKI-------------DNLEKAQEAYKLLQLSEEGP 654



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 161/402 (40%), Gaps = 49/402 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L +K   +  A  +FE + +    PD  S   LL++Y   K   EAE L+++M 
Sbjct: 346 YNILISLYAKHDDIGMATKYFEIMKEACLEPDLVSYRTLLYAYSIRKMVGEAEELVKEMD 405

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT--YNLWLAACASQNDK 225
           E          + +  +YI  G LD+   +L  L+ + + ++ +  Y   + A       
Sbjct: 406 ERRLEIDQYTQSALTRMYIKAGMLDQ--SLLWFLRFHVAGNMTSECYAASIDAYGEHGHT 463

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             AEK F+  +K K +   + ++ +   Y   +  EKA      ME+     +R +Y+SL
Sbjct: 464 LEAEKVFIWSQKQK-NLSVLEFNVMIKAYGIGKCYEKACQLFDSMEQHGVVADRCSYTSL 522

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           + + T            KKM       +   Y  VI S  KLG+ E AE+IY  WE I  
Sbjct: 523 IQILTTSDQPHMAKPYLKKMQEAGLVSDCIPYCVVICSFAKLGQLEMAEDIY--WEMIRH 580

Query: 346 TGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
              P V   +IL+  + +  +++ A S+ + +   G+      +  L   Y K   +EK 
Sbjct: 581 GVQPDVIVYSILINVFSDAGRVKEAISYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKA 640

Query: 404 LECFK------------------------KAIGSVRKWVPDHR-----------LITAAY 428
            E +K                          +G  ++     +           ++   Y
Sbjct: 641 QEAYKLLQLSEEGPNVYSSNCMIDLYVKQSMVGQAKQIFDTLKKNGGANEFTFAMMLCLY 700

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
            K+E     D A  +   +R  G ++   YN++L  YA AG+
Sbjct: 701 KKIER---FDEAIQIAKQIRKLGPLTELSYNNVLDLYAIAGR 739



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM  R        Y +L+ +Y+  G +D+ L     M+    + ++     V+    K G
Sbjct: 176 EMNARGIAATCSTYGTLIDVYSKGGRRDDALSWLDMMLGQGVQPDEVTMVIVVQLYKKAG 235

Query: 329 EFEKAENIYDEWESISGTG------DPRVP-----------NILLAAYINRNQLEMAESF 371
           EF+KAE  + +W   +         D RV            N L+  Y    QL+ A   
Sbjct: 236 EFQKAEEFFKKWSLGNDNAMATLELDERVVCANASFGSHTYNTLIDTYGKAGQLKEASET 295

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           + +++ +G+ P   T+  +       GQ+E+V
Sbjct: 296 FAKMLKQGVAPTTVTFNTMINICGNHGQLEEV 327



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPY--NHMLNLYISNGQLDKVPQMLQELKKN 204
           L++ + N + A+    + ++SE G    P  Y  N M++LY+    + +  Q+   LKKN
Sbjct: 630 LYAKIDNLEKAQEAYKLLQLSEEG----PNVYSSNCMIDLYVKQSMVGQAKQIFDTLKKN 685

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKA 263
              +  T+ + L  C  +  +   E   +  +  K+ P   +SY+ +  LY     P++A
Sbjct: 686 GGANEFTFAMML--CLYKKIERFDEAIQIAKQIRKLGPLTELSYNNVLDLYAIAGRPKEA 743

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
             T KEM + + + N  +  SL +L    G
Sbjct: 744 IETFKEMVRASIQVNDCSLRSLGNLLLRYG 773


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 167/383 (43%), Gaps = 16/383 (4%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G   A + F  L  K   P   TC+ LL S V+  +  ++  + + +   G +     ++
Sbjct: 201 GFGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFS 260

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            M+N +    + D    +  +++K   +P+VVTYN  +         + A +   ++ K 
Sbjct: 261 TMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE 320

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           K+ P  I+YS   +  IK+E  ++A   LKEM +     N V Y++L+  Y  MG   E 
Sbjct: 321 KVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEA 380

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           L+I   M+S     N      +I    K  +  +AEN+ +E   + G G P +     + 
Sbjct: 381 LKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEE---MIGRGLP-INQGSFSM 436

Query: 359 YIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            IN    + +   A  F   ++ + ++P       L  G  K G+  + +E + + +G  
Sbjct: 437 VINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLG-- 494

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP- 472
           + +VP+     A  + L + G++     LL  +   G V   I YN+L+    K GK+  
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKE 554

Query: 473 -LIIVERMQKDNVQMDAETQKVL 494
              + E M K  +Q D  T  +L
Sbjct: 555 GFELKEEMVKKGIQPDIYTFNLL 577



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 13/305 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H   +     E   L+  M E G +   + YN +++     G++ +  ++ +E+
Sbjct: 503 TSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEM 562

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK   PD+ T+NL L    + +  + A + + E KK    P+  +Y  +   Y K    
Sbjct: 563 VKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKV 622

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+    L E+  +    N V Y+SL+  Y   G  +   R+   M S    ++ A Y+ +
Sbjct: 623 EEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSL 682

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           +  L  +G  + A+++ DE        +  +PN+     ++  Y    Q+         +
Sbjct: 683 MHGLCNIGLVDDAKHLLDEMRK-----EGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM 737

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
            +  I P   T+ ++  G+ K G+ ++  +   +   + +  +PD     A  N L ++G
Sbjct: 738 SSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEM--TEKGILPDAVTYNAFTNGLCKEG 795

Query: 436 DIDGA 440
            ++ A
Sbjct: 796 KVEEA 800



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 148/343 (43%), Gaps = 26/343 (7%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T S  ++  ++ +K  EA  ++++MSE GF+   + YN +++ Y   G + +  ++  + 
Sbjct: 328 TYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM 387

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS-LYIKMEL 259
           L K  SP+ VT N  +      +    AE    E+    +  +  S+S + + L +K   
Sbjct: 388 LSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRF 447

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
              A   ++EM  R  R N    ++L+S     G + E + +W +++      N      
Sbjct: 448 V-TALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNA 506

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K G  ++   +  +        D    N L++      +++        +V KG
Sbjct: 507 LIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKG 566

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVL----ECFKKAIGSVRKWVPD---HRLITAAY---N 429
           I+P   T+ LL  G     ++++      EC K        +VP+   + ++   Y   N
Sbjct: 567 IQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNG------YVPNVYTYGVMIDGYCKAN 620

Query: 430 KLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           K+EE       E+LL  L +    +++ +YNSL+R Y   G M
Sbjct: 621 KVEE------GENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 1/202 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   ++  Y +  K  E E L+ ++         + YN ++  Y  NG ++   ++  ++
Sbjct: 608 TYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDM 667

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +       TY+  +    +    + A+    E++K  + P+ + Y+T+   Y K+   
Sbjct: 668 KSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQM 727

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            K    L+EM       N+  Y+ ++  +  +G   E  ++  +M       +   Y   
Sbjct: 728 NKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAF 787

Query: 321 ISSLVKLGEFEKAENIYDEWES 342
            + L K G+ E+A  + DE  S
Sbjct: 788 TNGLCKEGKVEEAFKVCDEMSS 809



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 3/217 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D   K   +   EN    L  K    ++   ++L+ +Y  N     A  L + M 
Sbjct: 609 YGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMK 668

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L     Y+ +++   + G +D    +L E++K    P+VV Y   +   +      
Sbjct: 669 SRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMN 728

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
                  E+    I P+  +Y+ +   + K+   ++AA  L EM ++    + V Y++  
Sbjct: 729 KVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFT 788

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
           +     G  +E  ++  +M S    +++  YT +I  
Sbjct: 789 NGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 117/298 (39%), Gaps = 42/298 (14%)

Query: 201 LKKNTSPDVVTYN-LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           L K   P++VT N L    C + N +ET  K   ++ +  +  D I+Y+TL S   K   
Sbjct: 493 LGKGFVPNIVTSNALIHGLCKAGNMQETL-KLLRDMLERGLVFDRITYNTLISGCCKEGK 551

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++     +EM K+  + +   ++ LL    N    DE  R+W +        N   Y  
Sbjct: 552 VKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGV 611

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    K  + E+ EN+ +E  S     +  V N L+ AY     +  A    + + ++G
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRG 671

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           +     T+  L  G                                     L   G +D 
Sbjct: 672 VLLSCATYSSLMHG-------------------------------------LCNIGLVDD 694

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL--IIVERMQKDNVQMDAETQKVL 494
           A+HLL  +R  G +   + Y +++  Y+K G+M    I+++ M   N+  +  T  ++
Sbjct: 695 AKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIM 752


>gi|255576798|ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531275|gb|EEF33118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G  +   +LN I+R L K  R++   ++ +WM+    I + S  Y  ++  + K    + 
Sbjct: 107 GAILKAQDLNVILRNLGKQSRWQDLSKLFDWMQQHSKISVSS--YTSYMKFMGKSLNPAK 164

Query: 126 AENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   + ++ D+    +   C+++L   V++ K   +  L  KM + G     + Y+ +L+
Sbjct: 165 ALEIYNSIADESVKNNVFICNSVLSCLVRSGKFDISLKLFHKMKQNGLTPDTITYSTLLS 224

Query: 184 LYI-SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
             I +     K    +QELK N    D V Y   LA CAS N  E AE  F ++K     
Sbjct: 225 GCIKAKDGYSKTLDFVQELKYNGLQMDTVIYGTILAVCASHNRCEEAESYFSQMKNEGHL 284

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P+   YS+L + Y      +KA   +++M+      N+V +++LL +Y   G  ++  ++
Sbjct: 285 PNVFHYSSLLNAYASSGNYKKAEELVQDMKSLGLVPNKVIWTTLLKVYVRGGLFEKSQQL 344

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
             ++ +L    ++  Y  ++  L K G  ++A + +DE +  +   D    +I+++AY  
Sbjct: 345 LLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKNVKSDGYAYSIMISAYCR 404

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              LE A+        K  K        +   Y + G ME V++  +K
Sbjct: 405 GRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESVMQTMRK 452


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 17/335 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           SAL+    + ++  EA AL+E M+E G     + YN ++  +    ++D+    ++++  
Sbjct: 113 SALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVA 172

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD++TY   +       D     +   E+ +    PD ++YST+     K      
Sbjct: 173 EGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRD 232

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    +EM   +C    + Y+SL+  Y   G  DE +R+  KM+      +   YT ++S
Sbjct: 233 AVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMS 289

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +  K+G  + A  ++ +  +   + D      L+       ++E A      +  +G  P
Sbjct: 290 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE----EQGDID 438
              T+  +  GY K  Q+ K  E    A    R +VP+    T  YN L       G  D
Sbjct: 350 TIYTYNCVVDGYCKANQVRKAEELV--ADFRSRGFVPN----TVTYNILVAGCCRAGRTD 403

Query: 439 GAEHLLVTLRNAGH---VSTEIYNSLLRTYAKAGK 470
            A   L  L + G     S  +Y  +L    + G+
Sbjct: 404 QALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGR 438



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 42/313 (13%)

Query: 196 QMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           Q+LQE+      PD  T  + + +    +  + A +   E+    +  + I+YS L    
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS------- 307
            K E  ++A   ++ M +R C    V Y+S+++ +      DE     ++M++       
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 308 --------LFAKMND--------------------AEYTCVISSLVKLGEFEKAENIYDE 339
                    F K  D                      Y+ VI  L K G    A +I++E
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 239

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
              +S        N L+  Y     ++ A     ++V     P   T+  L   + K G+
Sbjct: 240 ---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGR 296

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIY 458
           ++   E F++ + +  K  PD    T+  + L  +G ++ A  LL  +   G   T   Y
Sbjct: 297 LDDAYELFQQMVAN--KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 459 NSLLRTYAKAGKM 471
           N ++  Y KA ++
Sbjct: 355 NCVVDGYCKANQV 367



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 59/321 (18%), Positives = 116/321 (36%), Gaps = 41/321 (12%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           L +N ++      G+L     + +++     PD +TY   +   +       A +   E+
Sbjct: 6   LLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEM 65

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
              +  PD  + + +       +  + A   ++EM  R    N + YS+L+         
Sbjct: 66  VSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERL 125

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           DE + + + M         AE  C  + +                            N +
Sbjct: 126 DEAVALVETM---------AERGCAPTVVTY--------------------------NSI 150

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  +    +++ A  F  ++V +G  P   T+  L  G+ K   + + LE   +   + R
Sbjct: 151 ITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEV--TRR 208

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PL 473
            + PD    +   + L + G +  A  +   +  A    T  YNSL+  Y +AG M   +
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAIT--YNSLIGGYCRAGDMDEAI 266

Query: 474 IIVERMQKDNVQMDAETQKVL 494
            ++ +M  D    D  T   L
Sbjct: 267 RLLGKMVDDKCAPDVVTYTTL 287


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 171/408 (41%), Gaps = 10/408 (2%)

Query: 40  TLGRRLLSLVYAKR--SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC-EW 96
           T G  L SL  A+R   A    R    +G + + +  + ++  L + ++   A E+  E 
Sbjct: 54  TYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM 113

Query: 97  MELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNK 154
           ++  +   +V+  Y   L  + K+  L  A + F  +  +   PD    + L+  + +  
Sbjct: 114 IDGGHQPNVVT--YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
              EA  L E+M E G +     YN +L+ +   G+  +V  + ++ L++   P++ T+N
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L       D   A + FLE++     PD +SY+TL         P +A   L+EM + 
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               + V+Y+ L+  Y+  G  D  ++++ ++     + +   Y+ +I  L + G+   A
Sbjct: 292 GVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAA 351

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             ++ +  +     D  V   L+       +L  +   +  +V     P    + LL + 
Sbjct: 352 FVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYK 411

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
             K  + + V E F +   + R + PD  +       L    D + AE
Sbjct: 412 LCKAKRSDDVCEIFHEL--TERGFSPDVEISKVILETLRRSDDKEAAE 457



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 10/301 (3%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           L YN++L +   +G+ D V     + L     P+  TY   L +       E A   F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +      P+  SYS L +   + +  ++AA  L EM     + N V Y SLLS    MG 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             E + ++ +M+      +   Y  +I    K G+  +A  +++E             N 
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF--KKAIG 412
           LL+ +  + +    +S +  ++ +G  P   T+  L  G+ K G M +    F   +++G
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGK 470
                V  + L+    +K    G    A+ LL  +  +G V  +I  YN L+  Y+K+G 
Sbjct: 258 CPPDVVSYNTLMRGMCSK----GKPHEAQRLLREMIRSG-VGPDIVSYNILIDGYSKSGA 312

Query: 471 M 471
           +
Sbjct: 313 L 313


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 40/283 (14%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYN 213
           +++EA+ +++K  E GF+   L YN +++ +I  G +       +E+ +   SP+V+TY 
Sbjct: 573 RTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYT 632

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +      N+ + A K   E++   ++ D  +Y  L   + K +  E A+    E+   
Sbjct: 633 TLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDG 692

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-------------------------- 307
               N V Y+SL+S Y N+   +  L + K+M+                           
Sbjct: 693 GLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLA 752

Query: 308 --LFAKMNDAE-------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILL 356
             L+++M+          YT +I+ L   G+ E A+ I  E E  S T  P VP  N L+
Sbjct: 753 LDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSIT--PNVPIYNALI 810

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           A +     L+ A   +N ++ KG+ P  TT+++L  G +K G 
Sbjct: 811 AGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGN 853



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 39/367 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++LL    +  K +EA  L +KM + G     + YN M+  +   G LD    +  + 
Sbjct: 455 TYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDM 514

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----------------- 243
           L     P+V+TY++ +       D E A   F  +    I P                  
Sbjct: 515 LDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRT 574

Query: 244 ------------------WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
                              ++Y+++   +IK      A T  +EM +     N + Y++L
Sbjct: 575 SEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTL 634

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++ +      D  L++  +M +   +++ A Y  +I    K  + E A  ++ E      
Sbjct: 635 INGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGL 694

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + +  + N L++ Y N N +E A +   R++ +GI     T+  L  G LK+G++   L+
Sbjct: 695 SPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALD 754

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRT 464
            + +   S +  +PD  + T   N L  +G ++ A+ +L  + R++   +  IYN+L+  
Sbjct: 755 LYSEM--SAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAG 812

Query: 465 YAKAGKM 471
           + KAG +
Sbjct: 813 HFKAGNL 819



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 142/331 (42%), Gaps = 7/331 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           LL+SY++  K  +A     ++ E   +      N +L   + N  + +  ++ +++  K 
Sbjct: 180 LLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKG 239

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              D  T ++ + A    N++E A+K FLE K   +  D  +YS +   + K    E A 
Sbjct: 240 VHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELAC 299

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             LK+M  +    +   ++S++      G   E LR+  +M+S   +MN    T ++   
Sbjct: 300 GLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGY 359

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN-QLEMAESFYNRLVTKGIKPC 383
            K  +   A   +D+    +G    RV   +L  +  +N  +  A   Y ++  K I P 
Sbjct: 360 CKQDKLVSALEFFDKMNE-NGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPT 418

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
                 L  G+LK    E+  + F +A+      + +     +  + L ++G +  A  L
Sbjct: 419 VFIVNSLIRGFLKVESREEASKLFDEAVACD---IANIFTYNSLLSWLCKEGKMSEATTL 475

Query: 444 LVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL 473
              + + G   T++ YNS++  + + G + +
Sbjct: 476 WQKMLDKGLAPTKVSYNSMILGHCRQGNLDM 506



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 129/326 (39%), Gaps = 5/326 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           + L+  Y +  K   A    +KM+E G     + Y  ++     NG + K   +  ++K 
Sbjct: 353 TTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKN 412

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           KN  P V   N  +        +E A K F E     I  +  +Y++L S   K     +
Sbjct: 413 KNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSE 471

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A T  ++M  +     +V+Y+S++  +   G  D    ++  M+    K N   Y+ ++ 
Sbjct: 472 ATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMD 531

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G+ E A  ++D     +        NI +       +   A+    + V KG  P
Sbjct: 532 GYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVP 591

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  G++K+G +   L  +++   S     P+    T   N   +  + D A  
Sbjct: 592 VCLTYNSIMDGFIKEGSVSSALTAYREMCES--GVSPNVITYTTLINGFCKNNNTDLALK 649

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAK 467
           +   +RN G  +    Y +L+  + K
Sbjct: 650 MRNEMRNKGLELDIAAYGALIDGFCK 675



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-- 178
           L SA  FF+ + +    P+  T + L+    +N   A+A  L  +M       CP  +  
Sbjct: 365 LVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNI--CPTVFIV 422

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N ++  ++     ++  ++  E       ++ TYN  L+    +     A   + ++   
Sbjct: 423 NSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDK 482

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            + P  +SY+++   + +    + AA+   +M     + N + YS L+  Y   G  +  
Sbjct: 483 GLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYA 542

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
             ++ +M+      +D  Y   I+ L K+G   +A+++  ++            N ++  
Sbjct: 543 FYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDG 602

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418
           +I    +  A + Y  +   G+ P   T+  L  G+ K    +  L    K    +R   
Sbjct: 603 FIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLAL----KMRNEMRN-- 656

Query: 419 PDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM-- 471
               L  AAY  L +    + DI+ A  L   L + G   ++ IYNSL+  Y     M  
Sbjct: 657 KGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEA 716

Query: 472 PLIIVERMQKDNVQMDAETQKVL 494
            L + +RM  + +  D +T   L
Sbjct: 717 ALNLQKRMLGEGISCDLQTYTTL 739


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 160/372 (43%), Gaps = 22/372 (5%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRE-------------LRKLKRYKHALEVCEWMELQYDI 103
           + MR+ +E G  V   +  R  +E              ++LK++    E+ EW+  Q+  
Sbjct: 79  MMMREIEESGSAVSILKTQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWW 138

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEA 161
                D+ + +    K+   S AE   + +  K   P   S  AL+ +Y + K+  +AEA
Sbjct: 139 NFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEA 198

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLWLA 217
           +  +M   G     + Y  +L  ++   +  +   + ++L    + +  PD   +++ + 
Sbjct: 199 VFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIY 258

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 D   A K F ++ +  I    +++++L S     +   + +    +M++   + 
Sbjct: 259 MYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETDYK---EVSNIYDQMQRTALKP 315

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V+YS L+  Y     ++E L ++++M+    +     Y  +I +    G  E+A  ++
Sbjct: 316 DVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVF 375

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
                     D      ++ AY+N + ++ AE F+ R+   G+KP    +  L  GY K 
Sbjct: 376 KAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435

Query: 398 GQMEKVLECFKK 409
             +E+V+  +++
Sbjct: 436 NNVERVMRVYER 447



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 125/305 (40%), Gaps = 43/305 (14%)

Query: 126 AENFFENLPDKMRG---PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE+L ++ R    PD      +++ Y +    A+A  L  +MSE G     + +N 
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL----- 235
           +++      ++  +   +Q  +    PDVV+Y+L + A      +E A   F E+     
Sbjct: 291 LMSFETDYKEVSNIYDQMQ--RTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGV 348

Query: 236 ------------------------------KKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
                                         ++ +++PD  SY+T+   Y+     + A  
Sbjct: 349 RPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEK 408

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             + +++   + N V Y +L+  Y+ +   + V+R++++M     + N   YT ++    
Sbjct: 409 FFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHG 468

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGIKPCY 384
           +  +F  A   + E E+     D +  NILL+ A     Q E  E   N  +    KP  
Sbjct: 469 RNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDG 528

Query: 385 TTWEL 389
           TT+ L
Sbjct: 529 TTYGL 533


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 170/401 (42%), Gaps = 41/401 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   LD + K R L  A +   ++  K   P+  T + L+  Y +     EA  ++E M+
Sbjct: 251 YNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMT 310

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
               L     YN ++N + ++G++D+  ++  E++K N  PDVVTYN  +  C+   D  
Sbjct: 311 RNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSS 370

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
                  E+ K  +  + ++Y+ +     K     +A TTL +ME+     + V Y++L+
Sbjct: 371 EVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLI 430

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMN-----------------DAEYTCVISS------ 323
             Y   G   +  R+  +M S   K++                 D  Y  + S+      
Sbjct: 431 GAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYI 490

Query: 324 -------LVKLGEF-----EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                  ++ LG F     ++A N++DE +           N ++       +++ A   
Sbjct: 491 LDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDK 550

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            N ++  G+ P  TT+ ++  G+  +G +EK  +   + I ++ K  PD          L
Sbjct: 551 LNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFK--PDVYTCNILLRGL 608

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             +G ++ A  L  TL + G  +    YN+++ +  K GK 
Sbjct: 609 CREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKF 649



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 1/240 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + +LH     KK  EA  L+   S+ G++   + Y  ++  Y  + + D+   +  E+
Sbjct: 460 TLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEM 519

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   P  +TYN  +         + A     E+ +  + PD  +Y+ +   +      
Sbjct: 520 KERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNV 579

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA     EM +   + +    + LL      G  ++ L+++  ++S    ++   Y  +
Sbjct: 580 EKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTI 639

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ISSL K G+FE A ++  E E+     D     +++AA  +  +++ AE F  ++V  GI
Sbjct: 640 ISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 140/338 (41%), Gaps = 15/338 (4%)

Query: 142 TCSALLHSYVQNKKSAE---AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQM 197
           TC+ L++S V+   S+    A  +++   + G +    P  +  N+ I    L+ KV   
Sbjct: 177 TCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVV----PNTNSFNILIYGYCLESKVKDA 232

Query: 198 LQELKKNTS----PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           L  + K +     PD V+YN  L A   +   + A    L++K   + P+  +Y+ L   
Sbjct: 233 LDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCG 292

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y ++ L ++A   ++ M +         Y+ L++ + N G  DE  RI  +M  +    +
Sbjct: 293 YCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPD 352

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  +I    +  +  +  ++ +E +      +    NI+L     +  +  A +  +
Sbjct: 353 VVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLD 412

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
           ++   G+ P   T+  L   Y K G+M K      +      K   D   +    + L  
Sbjct: 413 KMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKI--DTWTLNTILHCLCV 470

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           +  +D A +LL +    G++  E+ Y  L+  Y K  K
Sbjct: 471 EKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEK 508


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 192/437 (43%), Gaps = 27/437 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ---YDIKLVSGDYAVHLDLISKIRGLSSAENF 129
           + +R+   + K K+Y   L +C+ MEL+   +++  +S    + ++   + R L  A + 
Sbjct: 188 DFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS----IMINCFCRCRKLCLAFSA 243

Query: 130 FENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYI 186
              +      P+T   S L++      + +EA  L+++M E G     +  N ++N L +
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           S  + + +  + + ++    P+ VTY   L           A +   ++++  I  D + 
Sbjct: 304 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 363

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           YS +     K    + A     EME +    N + Y+ L+  + N G  D+  ++ + M+
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   ++ +I S VK G+  +AE ++ E        D      L+  +   N L+
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A    + +V+KG  P   T+ +L  GY K  +++  LE F+K   S+R  V D    T 
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM--SLRGVVAD----TV 537

Query: 427 AYNKLE----EQGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVE 477
            YN L     E G ++ A+ L   +V+ +   ++ T  Y  LL      G+    L I E
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT--YKILLDGLCDNGESEKALEIFE 595

Query: 478 RMQKDNVQMDAETQKVL 494
           +++K  +++D     ++
Sbjct: 596 KIEKSKMELDIGIYNII 612



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 146/336 (43%), Gaps = 6/336 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L++    + K AEA  L++KM E G     + Y  +LN+   +GQ     ++
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+++ ++N   D V Y++ +         + A   F E++   I  + I+Y+ L   +  
Sbjct: 349 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 408

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               +  A  L++M KR    N V +S L+  +   G   E   + K+M+      +   
Sbjct: 409 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 468

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT +I    K    +KA  + D   S     + R  NIL+  Y   N+++     + ++ 
Sbjct: 469 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 528

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            +G+     T+  L  G+ + G++    E F++ +   RK  P+        + L + G+
Sbjct: 529 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS--RKVPPNIVTYKILLDGLCDNGE 586

Query: 437 IDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
            + A  +   + ++   +   IYN ++     A K+
Sbjct: 587 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 622



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 155/359 (43%), Gaps = 10/359 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +L+   ++ ++A A  L+ KM E       + Y+ +++    +G LD    +  E+
Sbjct: 328 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 387

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K  + +++TYN+ +    +    +   K   ++ K KI+P+ +++S L   ++K    
Sbjct: 388 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 447

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    KEM  R    + + Y+SL+  +    + D+  ++   M+S     N   +  +
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K    +    ++ +        D    N L+  +    +L +A+  +  +V++ +
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+++L  G    G+ EK LE F+K   S  K   D  +     + +     +D A
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNASKVDDA 625

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL----IIVERMQKDNVQMDAETQKVL 494
             L  +L   G     + YN ++    K G  PL    ++  +M++D    D  T  +L
Sbjct: 626 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKG--PLSEAELLFRKMEEDGHAPDGWTYNIL 682



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 36/255 (14%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ S+V+  K  EAE L ++M   G     + Y  +++ +     LDK  QM+  +
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P++ T+N+ +      N  +   + F ++    +  D ++Y+TL   + ++   
Sbjct: 493 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 552

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
             A    +EM  R    N V Y  LL    + G  ++ L I++K+               
Sbjct: 553 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 612

Query: 306 ---MSLFAKMNDA-----------------EYTCVISSLVKLGEFEKAENIYDEWESISG 345
              M   +K++DA                  Y  +I  L K G   +AE ++ + E    
Sbjct: 613 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 672

Query: 346 TGDPRVPNILLAAYI 360
             D    NIL+ A++
Sbjct: 673 APDGWTYNILIRAHL 687


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 145/339 (42%), Gaps = 16/339 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + ++H Y +  +  +A     KM E  F       N +L    + G LD   ++    
Sbjct: 266 TYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTW 325

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME-L 259
           + K  + D VTYN  ++    +   E A     E+++ K+ PD  +Y+ +       E  
Sbjct: 326 ISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQ 385

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            EKA     +M +++ + +    + LL      G  D  L+++   +S    ++   Y  
Sbjct: 386 VEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNT 445

Query: 320 VISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
           +IS L K G FE+A ++  E E  +G   D    N ++  Y    Q+E A  F N++V K
Sbjct: 446 IISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEK 505

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA-YNK----LEE 433
             KP   T  +L  G  ++G + K L+ F         W+   + I A  YN     L +
Sbjct: 506 SFKPDLFTCNILLRGLCREGMLVKALKLF-------NTWISKGKAIDAVTYNTIISGLCK 558

Query: 434 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +G  + A  LL  ++          YN++L   A AG+M
Sbjct: 559 EGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRM 597



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 23/278 (8%)

Query: 207 PDVVTYN-----LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           PD  +YN     LWL  C S    ++ +K   EL ++ + P  I+Y+T+   Y +    E
Sbjct: 225 PDNASYNTILDVLWL--CRSGKTDQSIDK-LNELLESGLVPHQITYNTIIHGYCREGQVE 281

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA     +M +++ + +    + LL      G  D  L+++   +S    ++   Y  +I
Sbjct: 282 KAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTII 341

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQLEMAESFYNRLVTKGI 380
           S L K G FE+A ++  E E      D    N +L A  +   Q+E A  F N++V K  
Sbjct: 342 SGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSF 401

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA-YNK----LEEQG 435
           KP   T  +L  G   +G ++  L+ F         W+   + I A  YN     L ++G
Sbjct: 402 KPDLFTCNILLRGLCTEGMLDNALKLF-------NTWISKGKAIDAVTYNTIISGLCKEG 454

Query: 436 DIDGAEHLLVTL--RNAGHVSTEIYNSLLRTYAKAGKM 471
             + A  LL  +  +N        YN+++  Y + G++
Sbjct: 455 RFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQV 492



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 6/255 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAE-AEALMEKMSECGFLKCPLPYNHML 182
           A +    + +K  GPD  T +A+L +    +   E A     KM E  F       N +L
Sbjct: 353 AFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILL 412

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKI 240
               + G LD   ++    + K  + D VTYN  ++    +   E A     E++ K  +
Sbjct: 413 RGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGL 472

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            PD  +Y+T+   Y +    EKA     +M +++ + +    + LL      G   + L+
Sbjct: 473 VPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALK 532

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           ++   +S    ++   Y  +IS L K G FE+A ++  E +      D    N +L A  
Sbjct: 533 LFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALA 592

Query: 361 NRNQLEMAESFYNRL 375
           +  ++E AE F +++
Sbjct: 593 DAGRME-AEEFMSKI 606



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 5/228 (2%)

Query: 178 YNHML-NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN +L  L  + GQ++K  Q   ++ +K+  PD+ T N+ L    ++   + A K F   
Sbjct: 372 YNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTW 431

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME-KRTCRKNRVAYSSLLSLYTNMGY 294
                  D ++Y+T+ S   K    E+A   L EME K     ++  Y++++  Y   G 
Sbjct: 432 ISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQ 491

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            ++  +   KM+    K +      ++  L + G   KA  +++ W S     D    N 
Sbjct: 492 VEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNT 551

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQME 401
           +++      + E A      +  K + P CY T+  +       G+ME
Sbjct: 552 IISGLCKEGRFEEAFDLLAEMKEKKLGPDCY-TYNAILCALADAGRME 598


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 164/375 (43%), Gaps = 12/375 (3%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           S+IR    A  F E +      PD  TC+ L+    ++    EA  +++ M   G +   
Sbjct: 183 SRIR---EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDV 239

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           + YN +++     G++ +  ++L+ +  + SPD+VT+N  L           A +   E+
Sbjct: 240 ITYNSIIHALCVAGKVVEAAEILKTM--SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  I PD I+Y+ L +   ++   + A   L+E+ ++    + +AY+SL+      G  
Sbjct: 298 CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 357

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           +E  ++ K+M     +     Y+ ++S   + G   KA  I  E  SI+        NI+
Sbjct: 358 EEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIV 417

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L   I    +  A S  + LV +G  P   T+  L  G  K  ++ +  +   +   + R
Sbjct: 418 LGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM--ASR 475

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--P 472
              P+   + +    L   G +D A  L+V +    H  +  +Y SL+    K+ +M   
Sbjct: 476 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 535

Query: 473 LIIVERMQKDNVQMD 487
            ++++ M+   V +D
Sbjct: 536 CMVLDAMRGQGVALD 550



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 8/291 (2%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           DV +YN  L             K + +L  +   P+ +++  L     K     +A   L
Sbjct: 26  DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           + +++ +   +   ++ L+      G  D+ +++++ M S   K     Y  VIS L K 
Sbjct: 86  RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKS 145

Query: 328 GEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           G  EKA  + +E     G   P +   N L+ A+   +++  A +F  ++   GI P   
Sbjct: 146 GNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVL 205

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T  +L  G  K G +E+ LE        +   VPD     +  + L   G +  A  +L 
Sbjct: 206 TCNILVSGICKDGDVEEALEILDGM--KLAGPVPDVITYNSIIHALCVAGKVVEAAEILK 263

Query: 446 TLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
           T+  +  + T  +N+LL  + KAG +P  L ++E M ++N+  D  T  +L
Sbjct: 264 TMSCSPDLVT--FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTIL 312



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 15/290 (5%)

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           GQ  +  + L+ L + + +PDV  +N+ +       + + A K F  ++ +++ P+ ++Y
Sbjct: 76  GQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTY 135

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +T+ S   K    EKA   L+EM ++  +   + V Y++L++ +       E     +KM
Sbjct: 136 NTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKM 195

Query: 306 MSLFAKMNDAEYTC--VISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-ILLAAYINR 362
            +  A +N    TC  ++S + K G+ E+A  I D  +      D    N I+ A  +  
Sbjct: 196 KA--AGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAG 253

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
             +E AE     L T    P   T+  L  G+ K G + + LE  ++        +PD  
Sbjct: 254 KVVEAAEI----LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM--CRENILPDVI 307

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             T   N L   G +  A +LL  +   G++   I Y SL+    K+G++
Sbjct: 308 TYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 357



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 149/388 (38%), Gaps = 48/388 (12%)

Query: 126 AENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A  F   L +    PD    + L+H   ++    +A  L E M         + YN +++
Sbjct: 81  ALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVIS 140

Query: 184 LYISNGQLDKVPQMLQELKK---NTSPDVVTYNLWL----------AACA---------- 220
               +G L+K  ++L+E+ +    ++PD+VTYN  +           ACA          
Sbjct: 141 GLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGI 200

Query: 221 ---------------SQNDKETAEKAFLELKKTKIDPDWISY-STLTSLYIKMELPEKAA 264
                             D E A +    +K     PD I+Y S + +L +  ++ E AA
Sbjct: 201 NPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVE-AA 259

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             LK M   +C  + V +++LL  +   G     L + ++M       +   YT +++ L
Sbjct: 260 EILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGL 316

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            ++G+ + A  + +E        D      L+       ++E A      +  +G +   
Sbjct: 317 CRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGV 376

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             +  L  GY + G + K  E   + +      VP           L + G I  A  L+
Sbjct: 377 VMYSSLVSGYCRAGNVHKAREILAEMVSI--NMVPPLFTYNIVLGGLIKDGSISKAVSLI 434

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L   G+V   + YN+L+    KA ++
Sbjct: 435 SDLVARGYVPDVVTYNTLIDGLCKANRV 462


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 134/280 (47%), Gaps = 5/280 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T + L+ S  +  K  EA  + + M+  G       Y  MLN Y + G L 
Sbjct: 325 LPDVV----TLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLV 380

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +    L    +PD+ T+++ + A A+    + A   F E++   + PD ++Y+T+ 
Sbjct: 381 DMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVI 440

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   ++   + A     +M  +    ++ AY  L+  +   G   +   +  ++M+   +
Sbjct: 441 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMR 500

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           ++   ++ +I++L KLG    A+NI+D   ++    D  V ++L+  Y    ++E A   
Sbjct: 501 LDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRV 560

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 561 FDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREML 600



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 179/452 (39%), Gaps = 60/452 (13%)

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEA-EALM 163
           S  YA+ +D  ++      A  FF  L       D   A  LL  + + K++ EA + L+
Sbjct: 115 SHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILL 174

Query: 164 EKMSECGFLKCPLPYNHMLNLYIS---NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
            +  E G +     Y+ +L        +GQ D + +M+ E     SPDVV Y   +    
Sbjct: 175 HRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFF 234

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
            + D   A   F E+ +  I PD ++YS++     K     KA   L++M  +    +  
Sbjct: 235 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNW 294

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++L+  Y++ G   E +R++K+M       +      ++ SL K G+ ++A +++D  
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM 354

Query: 341 E-------------SISG-----------------TGDPRVPNI-----LLAAYINRNQL 365
                          ++G                  GD   P+I     L+ AY N   L
Sbjct: 355 AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGML 414

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           + A   +N +   G+KP   T+  +     + G+M+  +E F + I   +   PD     
Sbjct: 415 DKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMID--QGVAPDKYAYH 472

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM------------- 471
                    G +  A+ L++ + N G  +    ++S++    K G++             
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV 532

Query: 472 ---PLIIVERMQKDNVQMDAETQKVLKITSEM 500
              P  +V  M  D   +  + +K L++   M
Sbjct: 533 GQHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 564



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 166/405 (40%), Gaps = 51/405 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   ++ A + F+ +  +   PD  T S+++H+  + +   +AEA + +M 
Sbjct: 226 YTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMV 285

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA--------- 217
             G L     YN+++  Y S GQ  +  ++ +E+++++  PDVVT N+ +          
Sbjct: 286 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIK 345

Query: 218 ---------ACASQNDKETAEKAFLELKKTK-----------------IDPDWISYSTLT 251
                    A   QN    + K  L    TK                 I PD  ++S L 
Sbjct: 346 EARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLI 405

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y    + +KA     EM     + + V Y+++++    +G  D+ +  + +M+     
Sbjct: 406 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVA 465

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEM 367
            +   Y C+I      G   KA+ +  E   I   G  R+  +  ++ IN      ++  
Sbjct: 466 PDKYAYHCLIQGFCTHGSLLKAKELILE---IMNNG-MRLDIVFFSSIINNLCKLGRIMD 521

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS-VRKWVPDHRLITA 426
           A++ ++  V  G  P    + +L  GY   G+MEK L  F   + + +   V  +  +  
Sbjct: 522 AQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVN 581

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
            Y K+   G ID    L   +   G   ST +YN ++     AG+
Sbjct: 582 GYCKI---GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGR 623



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 109/288 (37%), Gaps = 3/288 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + D    PD  T + ++ +  +  K  +A     +M + G       Y+ 
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K  +++ E+  N    D+V ++  +           A+  F       
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             PD + YS L   Y  +   EKA      M       N V Y +L++ Y  +G  DE L
Sbjct: 534 QHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGL 593

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++M+    K +   Y  +I  L   G    A+  + E        +    NI+L  +
Sbjct: 594 SLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                 + A   +  L    +K    T   +  G  +  ++E+  + F
Sbjct: 654 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLF 701


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 174/402 (43%), Gaps = 15/402 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           + +E  +   ++ +L + + M+ Q   K     Y + + L+ +   L    + FE +   
Sbjct: 113 VFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAH 172

Query: 137 --MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-- 192
              R   + +AL++SY +N K   +  L+E+M +       L YN ++N   + G LD  
Sbjct: 173 GVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVIN-SCARGGLDWE 231

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +  +  E++ +   PD+VTYN  L AC+++   + AE  F  + +  + PD  +Y+ L 
Sbjct: 232 GLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLV 291

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + K+   +K +  LKEM          +Y+ LL  Y  +G  ++   +++ M      
Sbjct: 292 DTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCV 351

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y+ ++    K G +++   ++ E +  +   D    N L+  +      +   + 
Sbjct: 352 PNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTL 411

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++ +  + ++P   T+E L +   K G  +   +       S +  +P  +  T     +
Sbjct: 412 FHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHM--SEKGMIPSSKAYTGV---I 466

Query: 432 EEQGDIDGAEHLLVTLRNAGHVST----EIYNSLLRTYAKAG 469
           E  G     E  LVTL     + +    E YN+L+  +A+ G
Sbjct: 467 EAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGG 508



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 7/336 (2%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A +  R   E G          +V    KL R     E+ + M    ++  +S  Y V L
Sbjct: 268 AEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEIS-SYNVLL 326

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           +  ++I  +  A   F  + +    P+  T S LL  Y ++ +  E   L  +M      
Sbjct: 327 EAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTE 386

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                YN +++++   G   +V  +  ++ ++N  P++ TY   + AC      + A+K 
Sbjct: 387 PDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKI 446

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
            L + +  + P   +Y+ +   Y +  + E+A  TL  M +   +     Y++L+ ++  
Sbjct: 447 LLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFAR 506

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   E   I  KM           +  VI    + G+FE+A   Y E E      D R 
Sbjct: 507 GGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERT 566

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKP---CY 384
              +L+ Y     ++ +   +  +   GI P   CY
Sbjct: 567 LEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCY 602



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 12/222 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + ++ +Y Q     EA   +  M+E G       YN ++ ++   G   +   +L ++  
Sbjct: 463 TGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGD 522

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              + +  ++N  +         E A KA++E++K+++ PD  +   + S+Y    L ++
Sbjct: 523 FGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDE 582

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           +    +E++      N + Y  +L++Y      +E   +  +M++  A    +    VI 
Sbjct: 583 SVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRA----SNIHQVIG 638

Query: 323 SLVKLGEFEKAEN------IYDEWESISGTGDPRVPNILLAA 358
            ++K G+F+   N      ++D+  S       R  N LL A
Sbjct: 639 QMIK-GDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEA 679


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 6/333 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+ L+  +++     EA   + KM   G +   + YN ++     NG+L     +++++
Sbjct: 167 SCTNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDM 226

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                SPD +TYN  +     + +   A   + +  +    P  I+Y+ L  L  K    
Sbjct: 227 SLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGA 286

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTC 319
            +A   L++M    C  + V Y+SL++L +  G Y+D  L I   ++S   + N   Y  
Sbjct: 287 ARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVIL-NLLSHGMQPNAVTYNT 345

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I SL+  G +++ ++I       S        NILL        L+ A SFY+ +VT+ 
Sbjct: 346 LIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTEN 405

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
             P   T+  L  G  K+G +++ ++     +G+     P         + L   G ++ 
Sbjct: 406 CSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGT--SCSPGLVTYNIVIDGLARLGSMES 463

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           A+ L   + + G +  EI ++SL   + +A ++
Sbjct: 464 AKELYDEMVDKGIIPDEITHSSLTWGFCRADQL 496



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 168/433 (38%), Gaps = 66/433 (15%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A  T+ K    G        N ++  L K  R + AL++ E M L       SG     +
Sbjct: 184 ACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSL-------SGCSPDAI 236

Query: 115 DLISKIRGLSSAENFFENLP---DKMRGPDTCSALLHSY-------VQNKKSAEAEALME 164
              S IR L    NF + +    D++R    C   L +Y        +   +A A  ++E
Sbjct: 237 TYNSIIRCLFDKGNFNQAVNFWRDQLR--KGCPPYLITYTVLIELVCKYCGAARALEVLE 294

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
            M+  G     + YN ++NL    G+  D    +L  L     P+ VTYN  + +  +  
Sbjct: 295 DMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHG 354

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             +  +     + +T   P  ++Y+ L +   K  L ++A +    M    C  + + Y+
Sbjct: 355 YWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYN 414

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +LLS     G+ DE +++   ++          Y  VI  L +LG  E A+ +YDE    
Sbjct: 415 TLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDE---- 470

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                                          +V KGI P   T   LTWG+ +  Q+E+ 
Sbjct: 471 -------------------------------MVDKGIIPDEITHSSLTWGFCRADQLEEA 499

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYN----KLEEQGDIDGAEHLL-VTLRNAGHVSTEIY 458
            E  K+        + + R+   AY      L  Q  +D A  +L + ++   +    IY
Sbjct: 500 TELLKEM------SMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIY 553

Query: 459 NSLLRTYAKAGKM 471
           ++L++  A  G +
Sbjct: 554 SALIKAVADGGML 566



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 1/236 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+HS + +    E + +++ M+E       + YN +LN    +G LD+       +
Sbjct: 342 TYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTM 401

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +N SPD++TYN  L+    +   +   +    L  T   P  ++Y+ +     ++   
Sbjct: 402 VTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSM 461

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A     EM  +    + + +SSL   +      +E   + K+M     ++ +  Y CV
Sbjct: 462 ESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCV 521

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           I  L +  + + A  + D         D R+ + L+ A  +   L+ A   +  L+
Sbjct: 522 ILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLI 577


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 157/363 (43%), Gaps = 6/363 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K     +A+  F+ +  K   PD  T ++L++ Y +     +A  L   + 
Sbjct: 338 YNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLK 397

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     L YN +++ Y   G L+   ++ +E+ +++  PDV TY + +       +  
Sbjct: 398 RAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLA 457

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
                F E+    ++PD  +Y+T  S  + +     A    +EM  R    + V Y+ L+
Sbjct: 458 MVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLI 517

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   +   +W KM++   +++   YTC+I +  + G   +A+NI+D   +   +
Sbjct: 518 DGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLS 577

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                  I +  Y  R  L +A  ++ +++ +G++P   T+ +L     + G+ E   + 
Sbjct: 578 PSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQH 637

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTY 465
           F + +   R  VP+    T   +   ++G+   A  L   +   G H     +N+L + +
Sbjct: 638 FHEMLE--RGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695

Query: 466 AKA 468
            + 
Sbjct: 696 GEG 698



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 133/321 (41%), Gaps = 6/321 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++   ++   ++K   +L E++ +   P VVTYN  +       + E A+  F E++
Sbjct: 303 YNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMR 362

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD I+Y++L + Y K    ++A     ++++       + Y+ L+  Y  +G  +
Sbjct: 363 AKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLE 422

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
              R+ ++M       +   YT +++    +         +DE  S     D    N  +
Sbjct: 423 GARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRI 482

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
           +A +    +  A      ++ +GI     T+ +L  G  K G ++     + K +    +
Sbjct: 483 SAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLR 542

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII 475
              D    T   +   E+G +  A+++   +  +G   S   Y   + TY + G + L  
Sbjct: 543 L--DCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAY 600

Query: 476 --VERMQKDNVQMDAETQKVL 494
               +M ++ V+ +  T  VL
Sbjct: 601 GWFRKMLEEGVEPNEVTYNVL 621


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/468 (19%), Positives = 184/468 (39%), Gaps = 43/468 (9%)

Query: 42  GRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
            +  L ++ +     +  R+  E G  +    + R++++L  L +   A++  +W   Q 
Sbjct: 70  AKEFLRVLDSSEDFELASRRLCEFGGYLVPSVVGRVLQQLDDLDK---AVKFFDWCTGQP 126

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEA 159
             K         L    + +    A + F+N    +  PD  T S L++ + + +   +A
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL--- 216
             L+++M + G +     YN ++     NG++D      +++++N +P V+TY + +   
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDAL 246

Query: 217 ------------------AACASQ--------------NDKETAEKAFLELKKTKIDPDW 244
                             A CA                 + + A   F ++ +    PD 
Sbjct: 247 CKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDV 306

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +Y+ L   Y K E P+  A  L+EM K  C  N + Y++L+      G   +   + + 
Sbjct: 307 FTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQM 366

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+    K +   +  +I    K+G+ + A  ++          D    NI+++     N+
Sbjct: 367 MLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANR 426

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           ++ A     R+   G  P   T+  +  G  K  Q+++  E ++  +     +  D    
Sbjct: 427 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE--VLRNGGYFLDVVTC 484

Query: 425 TAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           +   + L +   +D AE LL  + RN        Y  L+  + KA ++
Sbjct: 485 STLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 532



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/387 (19%), Positives = 159/387 (41%), Gaps = 8/387 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++   K+  +  A   F  + +    PD  T + L+  Y + ++  +   L+++M 
Sbjct: 274 YNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV 333

Query: 168 ECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
           + G     + YN +++  + +G+ +D        L+++  P   T+NL +         +
Sbjct: 334 KYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLD 393

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F  +      PD  +Y+ + S   +    + A   L+ M +  C  + V Y+S++
Sbjct: 394 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S        DE   +++ + +    ++    + +I  L K    + AE +  E E     
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D     IL+  +   +QL+ + +F++ ++ KG  P   T+ ++     K  ++      
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
            K  +   R   PD  + T+  + L +    D A  L   ++  G   T + YN L+   
Sbjct: 574 LKTMLE--RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKL 631

Query: 466 AKAGKM--PLIIVERMQKDNVQMDAET 490
            K  ++   + ++E M+ D    D  T
Sbjct: 632 CKVSRLDEAIHLLEVMESDGCLPDTVT 658



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 157/380 (41%), Gaps = 49/380 (12%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L K  +Y  A  + + M L+ D K     + + +D+  K+  L  A   F+ + 
Sbjct: 345 NTLMDSLVKSGKYIDAFNLAQMM-LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLN------ 183
           D+   PD  T + ++    +  +  +A  L+E+M+E G   CP   + YN +++      
Sbjct: 404 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG---CPPDVVTYNSIVSGLCKAS 460

Query: 184 -------LY--ISNG--------------------QLDKVPQMLQELKKNTS-PDVVTYN 213
                  +Y  + NG                    +LD   ++L+E+++N S PDVV Y 
Sbjct: 461 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 520

Query: 214 LWLAA-C-ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           + +   C A Q DK  A   F E+      P  I+YS +     K          LK M 
Sbjct: 521 ILIHGFCKADQLDKSLA--FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 578

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           +R    + + Y+S++         DE   ++K M           Y  ++  L K+   +
Sbjct: 579 ERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD 638

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           +A ++ +  ES     D    N +   +    + + A   +  + ++G  P    + LL 
Sbjct: 639 EAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698

Query: 392 WGYLKKGQMEKVLECFKKAI 411
              + + +M++ +E +++A+
Sbjct: 699 TKLVAEEKMDQAMEIWEEAL 718



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 127/301 (42%), Gaps = 6/301 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLI 117
           + +  E G        N IV  L K  +   A EV E +    Y + +V+   +  +D +
Sbjct: 434 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTC--STLIDGL 491

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K R L  AE     +      PD    + L+H + +  +  ++ A   +M + G +   
Sbjct: 492 CKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTV 551

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + Y+ +++    + ++     +L+  L++  +PD + Y   +      +  + A + +  
Sbjct: 552 ITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKL 611

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +K+T   P  ++Y+ L     K+   ++A   L+ ME   C  + V Y+S+   +     
Sbjct: 612 MKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAE 671

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+  R+++ M S         Y+ +++ LV   + ++A  I++E        DP +   
Sbjct: 672 HDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRT 731

Query: 355 L 355
           L
Sbjct: 732 L 732



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 7/242 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           TCS L+    ++++  +AE L+ +M   G     + Y  +++ +    QLDK      E 
Sbjct: 483 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 542

Query: 201 LKKNTSPDVVTYNLW---LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L K   P V+TY++    L   A   D     K  LE   T   PD I Y+++     K 
Sbjct: 543 LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVT---PDAIVYTSVIDGLCKS 599

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           +  ++A    K M++  C    V Y+ L+     +   DE + + + M S     +   Y
Sbjct: 600 DSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTY 659

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             V     K  E +KA  ++   +S   +  P + ++LL   +   +++ A   +   + 
Sbjct: 660 NSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALE 719

Query: 378 KG 379
            G
Sbjct: 720 AG 721


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 56/339 (16%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +LN     G +D++ Q+  E L+    P++ TYN  +       + E A +   ++ 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  +DPD+ +Y++L   Y + +  + A     EM  + CR+N VAY+ L+          
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC------ 299

Query: 297 EVLRIWKKMMSLFAKMNDAE-------YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            V R   + M LF KM D E       YT +I SL       +A N+  E E      + 
Sbjct: 300 -VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNI 358

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK- 408
               +L+ +  ++ + E A     +++ KG+ P   T+  L  GY K+G +E  ++  + 
Sbjct: 359 HTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVEL 418

Query: 409 --------------------------KAIGSV-----RKWVPDHRLITAAYNKLEE---- 433
                                     KA+G +     RK +PD       YN L +    
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD----VVTYNSLIDGQCR 474

Query: 434 QGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
            G+ D A  LL  + + G V  +  Y S++ +  K+ ++
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 513



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 143/370 (38%), Gaps = 23/370 (6%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           + G    ++    ++  L K KR + A ++ + +E Q  +      Y   +D   K   +
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE-QKGVNPNVVMYTALIDGYCKAGKV 548

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A    E +  K   P+  T +AL+H    + K  EA  L EKM + G          +
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL 608

Query: 182 LNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++  + +G  D      Q+ L   T PD  TY  ++     +     AE    ++++  +
Sbjct: 609 IHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGV 668

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL--------------- 285
            PD  +YS+L   Y  +     A   LK M    C  ++  + SL               
Sbjct: 669 SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGS 728

Query: 286 ---LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
              L   +NM   D V+ + +KM+      N   Y  +I  + ++G    AE ++D  + 
Sbjct: 729 EPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR 788

Query: 343 ISGTGDPR-VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
             G      V N LL+      +   A    + ++  G  P   + ++L  G  KKG+ E
Sbjct: 789 NEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKE 848

Query: 402 KVLECFKKAI 411
           +    F+  +
Sbjct: 849 RGTSVFQNLL 858



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 152/355 (42%), Gaps = 11/355 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ S     K  +A  L+ +M E G +   + YN ++N Y   G ++    +++ +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419

Query: 202 K-KNTSPDVVTYN-LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + +  SP+  TYN L    C S   K  A     ++ + K+ PD ++Y++L     +   
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKSNVHK--AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            + A   L  M  R    ++  Y+S++         +E   ++  +       N   YT 
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    K G+ ++A  + ++  S +   +    N L+       +L+ A     ++V  G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           ++P  +T  +L    LK G  +     F++ + S  K  PD    T        +G +  
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK--PDAHTYTTFIQTYCREGRLLD 655

Query: 440 AEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAET 490
           AE ++  +R  G VS ++  Y+SL++ Y   G+      +++RM+    +    T
Sbjct: 656 AEDMMAKMRENG-VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 141/335 (42%), Gaps = 5/335 (1%)

Query: 68  TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127
           TV  Y +  +++ L   +R   AL + + ME +  IK     Y V +D +        A 
Sbjct: 322 TVRTYTV--LIKSLCGSERKSEALNLVKEME-ETGIKPNIHTYTVLIDSLCSQCKFEKAR 378

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
                + +K   P+  T +AL++ Y +     +A  ++E M           YN ++  Y
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438

Query: 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             +     +  + + L++   PDVVTYN  +       + ++A +    +    + PD  
Sbjct: 439 CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQW 498

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+++     K +  E+A      +E++    N V Y++L+  Y   G  DE   + +KM
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           +S     N   +  +I  L   G+ ++A  + ++   I          IL+   +     
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           + A S + ++++ G KP   T+      Y ++G++
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 175/410 (42%), Gaps = 23/410 (5%)

Query: 89  HALEVC------EWMELQYDIKLVSGDYAVHLDLISKIRGLSS--AENFFENLPDKMRGP 140
           + L++C      E  EL+Y  KL+ G Y   L+ +++  GL     + + E L DK+  P
Sbjct: 161 YVLDLCRKMNKDERFELKY--KLIIGCYNTLLNSLARF-GLVDEMKQVYMEMLEDKV-CP 216

Query: 141 D--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           +  T + +++ Y +     EA   + K+ E G       Y  ++  Y     LD   ++ 
Sbjct: 217 NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276

Query: 199 QE--LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            E  LK     +V   +L    C ++   E A   F+++K  +  P   +Y+ L      
Sbjct: 277 NEMPLKGCRRNEVAYTHLIHGLCVARRIDE-AMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            E   +A   +KEME+   + N   Y+ L+    +    ++   +  +M+      N   
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I+   K G  E A ++ +  ES   + + R  N L+  Y   N +  A    N+++
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKML 454

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            + + P   T+  L  G  + G  +        ++ + R  VPD    T+  + L +   
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL--SLMNDRGLVPDQWTYTSMIDSLCKSKR 512

Query: 437 IDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 483
           ++ A  L  +L   G + +  +Y +L+  Y KAGK+    +++E+M   N
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 47/287 (16%)

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNRV-AYSSLLSLYTNMGYKDEVLRIW 302
           IS S ++SL+  ++L  K A        +  R K+ V +Y+SLL+L  N GY   V +I 
Sbjct: 88  ISPSHVSSLF-SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIR 146

Query: 303 KKM-------------MSLFAKMNDAE------------YTCVISSLVKLGEFEKAENIY 337
             M             + L  KMN  E            Y  +++SL + G  ++ + +Y
Sbjct: 147 LLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 338 DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
            E        D   PNI     ++  Y     +E A  + +++V  G+ P + T+  L  
Sbjct: 207 MEM-----LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261

Query: 393 GYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
           GY ++  ++   + F +    G  R  V    LI    + L     ID A  L V +++ 
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI----HGLCVARRIDEAMDLFVKMKDD 317

Query: 451 GHVST-EIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
               T   Y  L+++   + +    L +V+ M++  ++ +  T  VL
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364


>gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 842

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 168/406 (41%), Gaps = 54/406 (13%)

Query: 111 AVHLDLISKIRGLSSAENFF------ENLPDK--MRGPDTCSALLHSYVQNKKSAEAEAL 162
            + L +  K R    AE FF      EN  D        T + ++ +Y ++ +  EA   
Sbjct: 261 GIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASET 320

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222
            ++M E G +   + +N M+++Y +NGQ  +V  +++ +K + +PD  TYN+ ++     
Sbjct: 321 FKRMLEEGIVPTTVTFNTMIHVYGNNGQFGEVTSLMKTMKFHCAPDTRTYNILISLHTKN 380

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
           ND E A   F E+K   + PD +SY TL   +    + ++A   + EM+      +    
Sbjct: 381 NDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAEELIAEMDDNDVEIDEYTQ 440

Query: 283 SSLLSLYTNMGYKDEVLR---IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           S+L  +Y     + E+L     W + + +   M+   Y+  I +  + G   +AE ++  
Sbjct: 441 SALTRMYI----EAEMLEKSWSWFRRVHVAGNMSSEGYSANIDAYGERGYLSEAERVFIC 496

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW------- 392
            + ++        N+++ AY      E A   +  +++ G+ P   T+  L         
Sbjct: 497 CQEVNKRTVLEY-NVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADM 555

Query: 393 ----------------------------GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
                                        ++K GQ+    E +K+ +       PD  + 
Sbjct: 556 PDKAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVE--YNIEPDVVVY 613

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
               N   + G++  A   +  ++ AG   ++ IYNSL++ Y K G
Sbjct: 614 GVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVG 659



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 148/321 (46%), Gaps = 25/321 (7%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE----AEALME 164
           +Y V +      +    A   FE++      PD C+   ++ VQ   SA+    A+  +E
Sbjct: 507 EYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCT--YNTLVQILASADMPDKAKCYLE 564

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQN 223
           KM E G++   +PY  +++ ++  GQL+   ++ +E+ + N  PDVV Y + + A A   
Sbjct: 565 KMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTG 624

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           + + A      +K+  I  + + Y++L  LY K+   ++A    +++  R+C  N   Y 
Sbjct: 625 NVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKL-LRSC--NETQYP 681

Query: 284 SLLSLY--TNMGYKDEVLRIWKKMMSLFAKM------NDAEYTCVISSLVKLGEFEKAEN 335
            + + +   N+  +  ++R   K  ++F  M      N+  +  ++    K G FE+A  
Sbjct: 682 DVYTSHCMNNLCSERSMVR---KAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQ 738

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I  +   +    DP   N +L  Y    + + A   +  +V+ GI+P  +T++ L    +
Sbjct: 739 IAKQMREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILI 798

Query: 396 KKGQMEKVLECFKKAIGSVRK 416
           K G  +K +    + I  +RK
Sbjct: 799 KLGMSKKAV----RKIEEIRK 815



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 6/202 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQML---QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           Y+  ++ Y   G L +  ++    QE+ K T   V+ YN+ + A       E A + F  
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKRT---VLEYNVMIKAYGISKSCEKACELFES 530

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    + PD  +Y+TL  +    ++P+KA   L++M +     + + Y +++S +  +G 
Sbjct: 531 MMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAVISSFVKLGQ 590

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            +    ++K+M+    + +   Y  +I++    G  ++A +  +  +     G+  + N 
Sbjct: 591 LNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNS 650

Query: 355 LLAAYINRNQLEMAESFYNRLV 376
           L+  Y     L+ AE+ Y +L+
Sbjct: 651 LIKLYTKVGYLDEAEAIYRKLL 672



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 12/235 (5%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM ++  +     Y +L+ +Y+  G K   L    KM  +  + ++     V+    K  
Sbjct: 212 EMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAR 271

Query: 329 EFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           EF+KAE  + +W       D  V       N ++  Y    Q++ A   + R++ +GI P
Sbjct: 272 EFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVP 331

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +   Y   GQ  +V    K          PD R      +   +  DI+ A  
Sbjct: 332 TTVTFNTMIHVYGNNGQFGEVTSLMKTM---KFHCAPDTRTYNILISLHTKNNDIERAGT 388

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYA--KAGKMPLIIVERMQKDNVQMDAETQKVL 494
               ++ AG     + Y +LL  ++  +  K    ++  M  ++V++D  TQ  L
Sbjct: 389 YFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAEELIAEMDDNDVEIDEYTQSAL 443


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/385 (19%), Positives = 160/385 (41%), Gaps = 11/385 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS----ALLHSYVQNKKSAEAEALMEK 165
           Y   + ++ K   L  A   FE +    + P  C+     ++  Y    K  EA +L+E+
Sbjct: 169 YTSMMGVLCKANRLDEAVEIFEQMEQNRQVP--CAYAYNTMIMGYGSAGKFDEAYSLLER 226

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
               G +   + YN +L      G+ DK  ++ +E+K++  P++ TYN+ +       + 
Sbjct: 227 QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNV 286

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A K    +K+  + P+  + + +     K +  ++A +  + M+ + C  +   + SL
Sbjct: 287 EAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSL 346

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +      G  D+  RI+++M+      N   YT +I +  K    E    +Y E      
Sbjct: 347 IDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGC 406

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + D  + N  +       + E   + +  +  +G  P   ++ +L    +K G   +  E
Sbjct: 407 SPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYE 466

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            +       +  V D R      +   + G ++ A  LL  ++  GH  T + Y S++  
Sbjct: 467 LYYAM--KDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDG 524

Query: 465 YAKAGKM--PLIIVERMQKDNVQMD 487
            AK  ++    ++ E  + + ++++
Sbjct: 525 LAKIDRLDEAYMLFEEAKSNGIELN 549



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 140/314 (44%), Gaps = 9/314 (2%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAAC 219
           AL  +M E G+         ++ ++   G++D    +L E+K NT   D+V YN+ +   
Sbjct: 82  ALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCF 141

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A K F E+K   + PD ++Y+++  +  K    ++A    ++ME+       
Sbjct: 142 GKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCA 201

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            AY++++  Y + G  DE   + ++  +     +   Y C+++ L K G+ +KA  I++E
Sbjct: 202 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE 261

Query: 340 WESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +       P +P  NI++        +E A    + +   G+ P   T  ++     K 
Sbjct: 262 MKR---DAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKA 318

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STE 456
            ++++    F+      +   PD     +  + L +QG +D A  +   + +A  + +  
Sbjct: 319 QKLDEACSIFEGM--DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVV 376

Query: 457 IYNSLLRTYAKAGK 470
           +Y SL+R + K  +
Sbjct: 377 VYTSLIRNFFKCDR 390



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 129/324 (39%), Gaps = 44/324 (13%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECG 170
           ++D + K          FE +  +   PDT   S L+HS V+   + E   L   M + G
Sbjct: 416 YMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQG 475

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
            +     YN +++ +  +G+++K  Q+L+E+K     P VVTY   +   A  +  + A 
Sbjct: 476 CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAY 535

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F E K   I+                                    N+V YSSL+  +
Sbjct: 536 MLFEEAKSNGIEL-----------------------------------NQVIYSSLIDGF 560

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             +G  DE   + ++MM      N   + C++  LVK  E  +A   +   + +  T + 
Sbjct: 561 GKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQ 620

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               IL+       +   A  F+  +  +G+KP   T+  +  G  K G + +    F++
Sbjct: 621 ITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFER 680

Query: 410 AIGSVRKWVPDHRLITAAYNKLEE 433
              S    +PD    +A+YN + E
Sbjct: 681 FRAS--GGIPD----SASYNAMIE 698



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 115/301 (38%), Gaps = 49/301 (16%)

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
             D + Q+L E+      P   T    +A+C        A      ++  K  P +    
Sbjct: 6   NFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAF---- 61

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                                           AY++L+   + +G  D +L ++ +M  L
Sbjct: 62  -------------------------------SAYTTLIGALSEVGESDRMLALFNQMQEL 90

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             ++N    T +I    + G  + A ++ DE +S +   D  + N+ +  +    +++MA
Sbjct: 91  GYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMA 150

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
             F++ +   G+ P   T+  +     K  ++++ +E F++      + VP       AY
Sbjct: 151 WKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQM--EQNRQVP----CAYAY 204

Query: 429 NKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQK 481
           N +       G  D A  LL   R  G + + + YN +L    K GK    L I E M++
Sbjct: 205 NTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR 264

Query: 482 D 482
           D
Sbjct: 265 D 265


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 165/357 (46%), Gaps = 7/357 (1%)

Query: 46  LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           L+ +  + S A TM  ++ +  T++ + L  I RE  +   ++ AL + ++M+     K 
Sbjct: 16  LTSLAPRGSIAKTMEGYRNK-LTINDFSL--IFREFAQRSDWQKALRLFKYMQRHQWCKP 72

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLP--DKMRGPDTCSALLHSYVQNKKSAEAEALM 163
               Y + + ++ +   L  A   FE++P  D      + +AL+++Y +N +   +  L+
Sbjct: 73  NEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLL 132

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELK-KNTSPDVVTYNLWLAACAS 221
            +M         + YN ++N     G + + +  +  +++ +   PD++TYN  L+AC+S
Sbjct: 133 ARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSS 192

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           +   E A   F  + +  + PD I+Y+ L  +Y + +  E     L+EME+     + VA
Sbjct: 193 RGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVA 252

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y+ L+  Y   G      +++K+M       +   ++ ++ +  K G +++   ++ + +
Sbjct: 253 YNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK 312

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
                 D    N L+  +      + + + +  L+  G++P  +T+  L +   K G
Sbjct: 313 ERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGG 369



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL +        EA  +   M+E G +   + YN ++++Y    + + V ++
Sbjct: 178 PDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGEL 237

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+E+++   +PDVV YN+ + A         A K F ++++    PD +++STL   Y K
Sbjct: 238 LREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGK 297

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++      +M++R    +   Y++L+ ++   G+  E + ++  ++    + + + 
Sbjct: 298 HGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMST 357

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  ++ S  K G  + A+ I+        T        L+ AY N      A   +N + 
Sbjct: 358 YAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMK 417

Query: 377 TKGIKPCYTTWELLTWGYLKKG 398
             G KP   T+  L   +   G
Sbjct: 418 ESGCKPDLETYNALIGAHAGGG 439



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 3/174 (1%)

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           N F +L D    PD  T + LL+S  +      A+ +   M +         +  ++  Y
Sbjct: 341 NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAY 400

Query: 186 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
            +     +       +K++   PD+ TYN  + A A       A  A+L +    I  D 
Sbjct: 401 GNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADV 460

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            +Y++L   + +  L + A    ++ME+  C  NR  Y +L+ +Y   G  DE 
Sbjct: 461 STYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEA 514


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 12/344 (3%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWM-----ELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           LN ++  L KL++Y  A+E+   M     E   D+  V+    +HL   S    + + E 
Sbjct: 294 LNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDV--VTFTSIIHL--YSVCGQVENCEA 349

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            F  +  +   P+  S  AL+ +Y       EA     ++ + GF    + Y  +LN Y 
Sbjct: 350 AFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYG 409

Query: 187 SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            + +  K  Q+   +K+N   P++V+YN  + A  S      A K   E+++  I P+ +
Sbjct: 410 RSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVV 469

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           S  TL +   +     K  T L   E R  + N VAY++ +    N+G  D+ + ++K M
Sbjct: 470 SICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSM 529

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                K +   YT +IS   K+ ++ +A +  +E   +       V +  + AY  + Q+
Sbjct: 530 RKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQI 589

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
             AES +N + + G  P   T+  +   Y      EK    F++
Sbjct: 590 VEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEE 633



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 145/338 (42%), Gaps = 5/338 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +++EL +    +H   V  W++ Q + +  +  Y + + L ++      A   F  + + 
Sbjct: 121 LIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEW 180

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  T +A+++++ +  +   A  +M+ M           YN+++N   S+G   + 
Sbjct: 181 RCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 240

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             + +++ +N   PD+VT+N+ L+A  S      A   F  +K T I PD  + + +   
Sbjct: 241 LNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHC 300

Query: 254 YIKMELPEKAATTLKEM--EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +K+   +KA      M  +K  C  + V ++S++ LY+  G  +     +  M++   K
Sbjct: 301 LVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLK 360

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  +I +    G   +A   ++E +      D      LL AY    +   A   
Sbjct: 361 PNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQI 420

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           ++R+    +KP   ++  L   Y   G +   ++  ++
Sbjct: 421 FDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILRE 458



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 168/409 (41%), Gaps = 56/409 (13%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFE 131
           N ++        +K AL VC+ M        V  D   H  ++S  +     S A ++FE
Sbjct: 225 NNLINACGSSGNWKEALNVCKKMTENG----VGPDLVTHNIILSAFKSGAQYSKALSYFE 280

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEA----EALMEKMSECGFLKCP--LPYNHMLN 183
            +      PDT +   ++H  V+ ++  +A     ++ EK SEC     P  + +  +++
Sbjct: 281 LMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSEC----TPDVVTFTSIIH 336

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           LY   GQ++        +  +   P++V+YN  + A A++     A   F E+K+    P
Sbjct: 337 LYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRP 396

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D +SY++L + Y + + P KA      M++   + N V+Y++L+  Y + G   + ++I 
Sbjct: 397 DIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKIL 456

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           ++M     + N      ++++  +     K + +    E      +    N  + + +N 
Sbjct: 457 REMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNV 516

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            + + A   Y  +  K IK    T+ +L  G  K  +  + L   ++ +           
Sbjct: 517 GEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIM----------- 565

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
                              HL + L      S E+Y+S +  Y+K G++
Sbjct: 566 -------------------HLKLPL------SKEVYSSAICAYSKQGQI 589



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 134/339 (39%), Gaps = 44/339 (12%)

Query: 189 GQLDKVPQMLQELK--KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           G ++   ++ + LK  KN       YN+ +   A  N  + A   F E+++ +  PD  +
Sbjct: 129 GSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVET 188

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM- 305
           Y+ + + + +      A   + +M +     +R  Y++L++   + G   E L + KKM 
Sbjct: 189 YNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 248

Query: 306 ------------MSLFAKMNDAEYT----------------------CVISSLVKLGEFE 331
                       + L A  + A+Y+                       VI  LVKL +++
Sbjct: 249 ENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYD 308

Query: 332 KAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           KA  I++          P V     ++  Y    Q+E  E+ +N ++ +G+KP   ++  
Sbjct: 309 KAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNA 368

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-R 448
           L   Y  +G M+     F   I     + PD    T+  N          A  +   + R
Sbjct: 369 LIGAYAARG-MDNEAHLFFNEIKQ-NGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKR 426

Query: 449 NAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
           N    +   YN+L+  Y   G +   + I+  M+++ +Q
Sbjct: 427 NKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQ 465



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 8/210 (3%)

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
            Y+  + A + Q     AE  F  +K +   PD ++Y+ +   Y   E  EKA    +EM
Sbjct: 575 VYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEM 634

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
           E  + + + +A ++L+  +   G    VL + + M       +D  +  ++S+   L ++
Sbjct: 635 EASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDW 694

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
             A ++    E           N  L +     ++E     + +++  G      T+ +L
Sbjct: 695 RTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSIL 754

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
               L  G   K LE        V +W+ D
Sbjct: 755 LKNLLSSGNWRKYLE--------VLQWMED 776


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 7/307 (2%)

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALME 164
           S D+AV  D+ +++R  +SA      +     GP   T + L   Y    K   A     
Sbjct: 103 SFDHAV--DIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFL 160

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224
            M E G  +    +N +L++   + +++    +L+ LK    PD V+YN+       +  
Sbjct: 161 SMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKR 220

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A +   E+ +  I+P  ++Y+T+   Y +    ++A     EM+KR C  + V+Y++
Sbjct: 221 TPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTT 280

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++  +   G   +  R++ +M+      N A Y  +I    K    + A  +++E     
Sbjct: 281 VIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVR-E 339

Query: 345 GTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
           G   P V   N+++    +   +E A  F  R+   G++    T+ ++   +   G++EK
Sbjct: 340 GVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEK 399

Query: 403 VLECFKK 409
            LE F K
Sbjct: 400 GLEVFGK 406


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 158/354 (44%), Gaps = 16/354 (4%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           LL + V+ KK     +L +KM   G       +N ++N +    Q+     +L + LK  
Sbjct: 91  LLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLG 150

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD VT    +     +N    A     ++ +    PD ++Y+ +     K      A 
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDAL 210

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              KE+ ++  R N V Y++L++   N G  ++  R+ + M+      N   Y+ ++ + 
Sbjct: 211 DFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAF 270

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           VK G+  +A+ I++E   +S   D    + L+      ++++ A   ++ +V+KG  P  
Sbjct: 271 VKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDV 330

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----GDIDGA 440
            ++  L  G+ K  ++E  ++ F+K   S R  V +    T  YN L +     GD+D A
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFRKM--SQRGLVNN----TVTYNTLIQGFFQVGDVDKA 384

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           +     + + G VS +I  YN LL      G +   L+I E MQK  + +D  T
Sbjct: 385 QEFFSQMDSFG-VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVT 437



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 157/349 (44%), Gaps = 24/349 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDY------AVHLDLISKI 120
           + NR++  + K+K+Y   + + + ME+       Y   +V   +      ++ L ++ K+
Sbjct: 87  DFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKM 146

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             L      +E  PD++    T  +L++ + +  + ++A +L++KM E G+    + YN 
Sbjct: 147 LKLG-----YE--PDRV----TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNA 195

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++      +++      +E+ +K   P+VVTY   +    +      A +   ++ K K
Sbjct: 196 IIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRK 255

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P+ I+YS L   ++K     +A    +EM + +   + V YSSL++        DE  
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +++  M+S     +   Y  +I+   K    E    ++ +        +    N L+  +
Sbjct: 316 QMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGF 375

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
                ++ A+ F++++ + G+ P   T+ +L  G    G +EK L  F+
Sbjct: 376 FQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFE 424



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 126/265 (47%), Gaps = 3/265 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  +  A++ S  + ++  +A    +++   G     + Y  ++N   ++G+ +   ++
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+++ K+  +P+V+TY+  L A         A++ F E+ +  IDPD ++YS+L +    
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  ++A      M  + C  + V+Y++L++ +      ++ +++++KM       N   
Sbjct: 308 HDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVT 367

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    ++G+ +KA+  + + +S   + D    NILL    +   LE A   +  + 
Sbjct: 368 YNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQ 427

Query: 377 TKGIKPCYTTWELLTWGYLKKGQME 401
              +     T+  +  G  K G++E
Sbjct: 428 KSEMDLDIVTYTTVIQGMCKTGKVE 452



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A   F+ +  K   PD  S   L++ + + K+  +   L  KMS+ G +   + YN 
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  +   G +DK  +   ++     SPD+ TYN+ L         E A   F +++K++
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           +D D ++Y+T+     K    E A      +  +  + + V Y++++S     G + EV 
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490

Query: 300 RIWKKM 305
            ++ KM
Sbjct: 491 ALYTKM 496



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 34/262 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T SALL ++V+N K  EA+ + E+M                                  +
Sbjct: 262 TYSALLDAFVKNGKVLEAKEIFEEM----------------------------------V 287

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           + +  PD+VTY+  +      +  + A + F  +      PD +SY+TL + + K +  E
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVE 347

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
                 ++M +R    N V Y++L+  +  +G  D+    + +M S     +   Y  ++
Sbjct: 348 DGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILL 407

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
             L   G  EKA  I+++ +      D      ++       ++E A   +  L  KG+K
Sbjct: 408 GGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLK 467

Query: 382 PCYTTWELLTWGYLKKGQMEKV 403
           P   T+  +  G   KG   +V
Sbjct: 468 PDIVTYTTMMSGLCTKGLQHEV 489



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 2/213 (0%)

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F E+ KT+  P  + ++ L S  +KM+  +   +  K+ME    R +   ++ +++ +  
Sbjct: 73  FREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCC 132

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
                  L +  KM+ L  + +      +++   +      A ++ D+   I    D   
Sbjct: 133 CFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVA 192

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N ++ +     ++  A  F+  +  KGI+P   T+  L  G    G+        +  I
Sbjct: 193 YNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMI 252

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
              RK  P+    +A  +   + G +  A+ + 
Sbjct: 253 K--RKITPNVITYSALLDAFVKNGKVLEAKEIF 283



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 5/211 (2%)

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    +EM K     + V ++ LLS    M   D V+ + KKM  L  + +   +  VI+
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
                 +   A ++  +   +    D      L+  +  RN++  A S  +++V  G +P
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRP 188

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAE 441
               +  +     K  ++   L+ FK+ IG  RK + P+    TA  N L   G  + A 
Sbjct: 189 DIVAYNAIIDSLCKTRRVNDALDFFKE-IG--RKGIRPNVVTYTALVNGLCNSGRWNDAA 245

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            LL  +         I Y++LL  + K GK+
Sbjct: 246 RLLRDMIKRKITPNVITYSALLDAFVKNGKV 276


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 181/410 (44%), Gaps = 20/410 (4%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----LSSAEN 128
           +L  +V+ L     ++ A+ + EW+ L  +   +  D+ V ++++ +I G     S A  
Sbjct: 145 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHV-IEILVRILGRESQYSVAAK 203

Query: 129 FFENLP--DKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
             + +P  D M      + +LH+Y +  K  +A  L E+M E G     + YN +L+++ 
Sbjct: 204 LLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFG 263

Query: 187 SNGQ-LDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
             G+   K+  +L+E++ K    D  T +  L+ACA +     A+  F ELK    +P  
Sbjct: 264 KMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGT 323

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++Y+ L  ++ K  +  +A + LKEME+  C  + V Y+ L++ Y   G+  E   + + 
Sbjct: 324 VTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEM 383

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M       N   YT VI +  K G+ ++A  ++   +      +    N +L+    +++
Sbjct: 384 MTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSR 443

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDH- 421
                     + + G  P   TW  +      KG  + V   F+  K+ G    + PD  
Sbjct: 444 SNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCG----FEPDRD 499

Query: 422 --RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
               + +AY +     ++D ++      R   +     YN+LL   A+ G
Sbjct: 500 TFNTLISAYGRC--GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 547



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 8/280 (2%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD+    DT + L+ +Y +     +A  +  +M+  GF  C   YN +LN     G    
Sbjct: 496 PDR----DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 551

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ ++K K   P   +Y+L L   A   +    E+    + + +I P W+   TL  
Sbjct: 552 GENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLL 611

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K      +       +K   + + V ++S+LS++T     D+   I + +       
Sbjct: 612 ANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNP 671

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  ++   V+ GE  KAE I    E      D    N ++  +  +  ++ A    
Sbjct: 672 DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRML 731

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKK---GQMEKVLECFKK 409
           + +  +GI+PC  T+     GY      G++E V+EC  K
Sbjct: 732 SEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAK 771



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 1/157 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML+++  N   D+   +LQ + ++  +PD+VTYN  +     + +   AE+    L+
Sbjct: 641 FNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLE 700

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K+++ PD +SY+T+   + +  L ++A   L EM +R  R     Y++ +S YT MG   
Sbjct: 701 KSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYG 760

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           E+  + + M     + N+  +  V+    + G++ +A
Sbjct: 761 EIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEA 797



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 41/392 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++ +Y +  K  EA  L   M E G +     YN +L++     + +++ +ML ++
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K N   P+  T+N  LA C ++   +   + F E+K    +PD  +++TL S Y +    
Sbjct: 455 KSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A+    EM +         Y++LL+     G       +   M S   K  +  Y+ +
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLM 574

Query: 321 ISSLVKLGEF---EKAE------NIYDEW-------------ESISGT------------ 346
           +    K G +   E+ E       I+  W              +++G+            
Sbjct: 575 LQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGY 634

Query: 347 -GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D  + N +L+ +   N  + AE     +   G+ P   T+  L   Y+++G+  K  E
Sbjct: 635 KPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEE 694

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             K    S  K  PD             +G +  A  +L  +   G       YN+ +  
Sbjct: 695 ILKTLEKSQLK--PDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSG 752

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           Y   G    I  ++E M K++ + +  T K++
Sbjct: 753 YTAMGMYGEIEDVIECMAKNDCRPNELTFKMV 784



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 2/183 (1%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K    PD+V +N  L+     N  + AE     + +  ++PD ++Y++L  +Y++     
Sbjct: 631 KHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECW 690

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   LK +EK   + + V+Y++++  +   G   E +R+  +M     +     Y   +
Sbjct: 691 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFV 750

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S    +G + + E++ +         +     +++  Y    +   A  F +++  K   
Sbjct: 751 SGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI--KTFD 808

Query: 382 PCY 384
           PC+
Sbjct: 809 PCF 811


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 166/395 (42%), Gaps = 13/395 (3%)

Query: 19  KAAKITTLGLATEKKGA--GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHK-YELN 75
           K   +T L L     GA  GG D   R    L   K + A+T+     E   +    + +
Sbjct: 18  KGNPVTALSLNVCNFGAFSGGSDYRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFS 77

Query: 76  RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFFEN 132
           R++  + KLK+Y+  + +   +E    I  +S D   ++  +D   +   LS A +    
Sbjct: 78  RLLVAIAKLKKYEAVISLFRHIE----ILGISHDLYSFSTLIDCFCRCSRLSLALSCLGK 133

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      P   T  +L++ +    +  EA +L++++   G+    + YN +++    N Q
Sbjct: 134 MMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQ 193

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           +D    +L  ++K    PDV+TYN  +           + +   ++ +  I PD I++S 
Sbjct: 194 VDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSA 253

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +  ++ K     +A     EM +R+   N V Y+SL++     G  DE  ++   M+S  
Sbjct: 254 MIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKG 313

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   Y  +++   K    + A  I          GD    N L   Y    Q   AE
Sbjct: 314 FFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAE 373

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
               R+V+ G+ P   T+ +L  G  + G++EK L
Sbjct: 374 KVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKAL 408



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 124/300 (41%), Gaps = 11/300 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K    P +VT+   +      N  + A     ++     +P+ + Y+T+     +    
Sbjct: 135 MKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQV 194

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A   L  MEK   R + + Y+SL++   + G      RI   MM +    +   ++ +
Sbjct: 195 DTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAM 254

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I    K G+  +A+  YDE   I  + DP +   N L+        L+ A+   N +V+K
Sbjct: 255 IDVFGKEGQLLEAKKQYDEM--IQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSK 312

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G  P   T+  L  GY K  +++  ++     + S      D       Y    + G  +
Sbjct: 313 GFFPNAVTYNTLVNGYCKSKRVDDAMKIL--CVMSHDGVDGDTFTYNTLYQGYCQAGQFN 370

Query: 439 GAEHLLVTLRNAGHVSTEIY--NSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            AE +L  + + G V  +IY  N LL    + GK+   L+ +E +QK    +   T  ++
Sbjct: 371 AAEKVLARMVSCG-VLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNII 429



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 122/291 (41%), Gaps = 3/291 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + + R + +A +   ++      PD  T ++L+     + K   +  ++  M 
Sbjct: 181 YNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMM 240

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G     + ++ M++++   GQL +  +   E+ +++  P++VTYN  +         +
Sbjct: 241 RMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLD 300

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K    +      P+ ++Y+TL + Y K +  + A   L  M       +   Y++L 
Sbjct: 301 EAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLY 360

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G  +   ++  +M+S     +   +  ++  L + G+ EKA    ++ +     
Sbjct: 361 QGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETV 420

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
                 NI++      N++E A   +  L  KG+ P   T+  +  G  +K
Sbjct: 421 VGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRK 471


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 10/363 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +  R++     L+RY+  +   + MEL Y I      + + +    +   LS A +    
Sbjct: 73  DFTRLLTATANLRRYETVIYFSQKMEL-YGISHDLYSFTILIHCFCRCSRLSFALSVLGK 131

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      P   T  +LLH +    +  +A +L+  M + G+    + YN +++    NG+
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191

Query: 191 LDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           L+   ++L E+ KK    DVVTYN  L           A +   ++ K  I+PD ++++ 
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L  +++K    ++A    KEM + +   N V Y+S+++     G   +  + +  M S  
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   Y  +IS   K    ++   ++          D    N L+  Y    +L +A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF------KKAIGSVRKWVPDHRL 423
             +  +V++ + P   T  +L  G    G++E  L  F      +K IG V   +  H L
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 424 ITA 426
             A
Sbjct: 432 CKA 434


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 151/337 (44%), Gaps = 7/337 (2%)

Query: 139 GPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVP 195
            PD    +AL+  + +  +  +A A+  +M + G     + YN +L++Y   +    +V 
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            ++  +K++    D  TYN  ++ C  +     A + F E+K    +PD +++++L  +Y
Sbjct: 242 VLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY 301

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K    E+A   LK+ME   C  + V Y+SL+S Y   G  +E L + ++M     K + 
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDV 361

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS L ++G+ + A   Y E      + +    N L+  +  R +       ++ 
Sbjct: 362 VTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDD 421

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           L + G  P   TW  L   + + G   +V   FK+   +   ++P+     +  +     
Sbjct: 422 LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKA--GYIPERDTYVSLISSYSRC 479

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           G  D A  +   +  AG +     YN++L   A+ G+
Sbjct: 480 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGR 516



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 195/436 (44%), Gaps = 24/436 (5%)

Query: 49  VYAKRSA-----AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YD 102
           VY+K S       + +   KE+G  + +Y  N ++   R+   Y+ A ++ + M+   ++
Sbjct: 229 VYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFE 288

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
              V+  +   LD+  K R    A    + + +    P   T ++L+ +YV++    EA 
Sbjct: 289 PDKVT--FNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEAL 346

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAAC 219
            L ++M   G     + Y  +++     G++D       E+ +N  SP++ TYN  +   
Sbjct: 347 ELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMH 406

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
             +         F +L+     PD ++++TL +++ +  L  + +   KEM+K      R
Sbjct: 407 GVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPER 466

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             Y SL+S Y+  G  D+ + I+K+M+      + + Y  V+S+L + G + +AE ++ E
Sbjct: 467 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAE 526

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-- 397
            E      D    + LL AY N  +L+  ++    +  + I+P    W + T   +    
Sbjct: 527 MEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEP--HNWLVKTLVLVNNKV 584

Query: 398 ---GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHV 453
               + EK  +  ++     R+   D  ++ A  +   +   +   E +L  ++ N+ + 
Sbjct: 585 NSLSETEKAFQELRR-----RRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINH 639

Query: 454 STEIYNSLLRTYAKAG 469
           S   YNSL+  Y++ G
Sbjct: 640 SAATYNSLMHMYSRLG 655



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 124/267 (46%), Gaps = 9/267 (3%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +A+L +  +  +  +AE L  +M +       L Y+ +L+ Y +  +LDK+  +
Sbjct: 499 PDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKAL 558

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETA----EKAFLELKKTKIDPDWISYSTLTSL 253
            +++       +  +N  +      N+K  +    EKAF EL++ +   D    + + S+
Sbjct: 559 SEDIYAQR---IEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSI 615

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y K ++ +K    L  M++ +   +   Y+SL+ +Y+ +G  ++   I  ++ S   + +
Sbjct: 616 YGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPD 675

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  VI +  + G+ ++A  ++ E +      D    NI + +Y+     E A     
Sbjct: 676 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVR 735

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQM 400
            LV +G KP   T+  +  GY + G+M
Sbjct: 736 YLVAQGCKPNERTYNSILEGYCRHGRM 762



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 127/317 (40%), Gaps = 38/317 (11%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           F++L      PD  T + LL  + QN   +E   + ++M + G++     Y  +++ Y  
Sbjct: 419 FDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSR 478

Query: 188 NGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G  D+  ++ + + +    PD+ TYN  L+A A       AEK F E++     PD +S
Sbjct: 479 CGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELS 538

Query: 247 YSTLTSLYI-----------------------------------KMELPEKAATTLKEME 271
           YS+L   Y                                    K+    +     +E+ 
Sbjct: 539 YSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELR 598

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           +R C  +    ++++S+Y       +V  +   M       + A Y  ++    +LG+ E
Sbjct: 599 RRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCE 658

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
           K E I  E +S     D    N ++ AY  + Q++ A   ++ +   G+KP   T+ +  
Sbjct: 659 KCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFI 718

Query: 392 WGYLKKGQMEKVLECFK 408
             Y+     E+ ++  +
Sbjct: 719 KSYVANLMFEEAIDLVR 735



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
           +K+  LS  E  F+ L  +    D    +A++  Y +NK   + E ++  M E       
Sbjct: 582 NKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSA 641

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
             YN ++++Y   G  +K   +L E+K +   PD  +YN  + A   +   + A + F E
Sbjct: 642 ATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSE 701

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           +K + + PD ++Y+     Y+   + E+A   ++ +  + C+ N   Y+S+L  Y   G
Sbjct: 702 MKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHG 760



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 38/249 (15%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKM----------------- 166
           AE  F  + D+   PD  + S+LLH+Y   KK  + +AL E +                 
Sbjct: 520 AEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVL 579

Query: 167 ----------SECGFL-----KCPLPYN---HMLNLYISNGQLDKVPQMLQELKKNT-SP 207
                     +E  F      +C L  N    M+++Y  N  + KV ++L  +K+N+ + 
Sbjct: 580 VNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINH 639

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
              TYN  +   +   D E  E    E+K + + PD  SY+T+   Y +    ++A+   
Sbjct: 640 SAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLF 699

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            EM+    + + V Y+  +  Y      +E + + + +++   K N+  Y  ++    + 
Sbjct: 700 SEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRH 759

Query: 328 GEFEKAENI 336
           G   +A++ 
Sbjct: 760 GRMVEAKSF 768


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 154/342 (45%), Gaps = 10/342 (2%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  +VR  ++LK++    E+ EW+  Q+       D+ + +    K+   S AE   + +
Sbjct: 109 LGTLVR-FKQLKKWNLVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYM 167

Query: 134 PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
             K   P   S  AL+ +Y + K+  +AEA+  +M   G    P+ Y  +L   +   + 
Sbjct: 168 NKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILKSLVEGDKY 227

Query: 192 DKVPQMLQEL--KKNT--SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            +   + ++L  +K T   PD   +++ +       D   A K F ++ +  I    +++
Sbjct: 228 KEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTF 287

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           ++L S     +   + ++   +M++   + + V+YS L+  Y     ++E   ++++M+ 
Sbjct: 288 NSLMSFEGDYK---EVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLD 344

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     Y  ++ +    G  E+A+ ++          D      +L AY+N + ++ 
Sbjct: 345 AGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDG 404

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           AE F+ R+   G++P    +  L  GY K   +EKV+  +++
Sbjct: 405 AEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYER 446



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 128/303 (42%), Gaps = 45/303 (14%)

Query: 126 AENFFENLPDKMRG---PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           AE  FE+L  + R    PD      +++ Y ++   A+A  L  +MSE G  +  + +N 
Sbjct: 230 AEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNS 289

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL---- 235
           +++     G   +V  +  ++++    PDVV+Y+L + A      +E A   F E+    
Sbjct: 290 LMSF---EGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAG 346

Query: 236 -------------------------------KKTKIDPDWISYSTLTSLYIKMELPEKAA 264
                                          ++ +++PD  SY+T+   Y+     + A 
Sbjct: 347 IRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAE 406

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              + +++   R N V Y +L+  Y+ +   ++V+R++++M     + N   +T ++   
Sbjct: 407 KFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVH 466

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGIKPC 383
            +  +F  A   ++E E+     D +  NILL+ A     Q E  E   N  +   +KP 
Sbjct: 467 GRNSDFGNAVIWFNEMETRGYPPDKKAKNILLSLAKTPEEQQEANELTGNGAIQLEVKPS 526

Query: 384 YTT 386
             T
Sbjct: 527 GMT 529



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 71/358 (19%), Positives = 141/358 (39%), Gaps = 49/358 (13%)

Query: 173 KCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDV--VTYNLWLAACASQNDKET 227
           K PLP + +L   +   QL K   V ++L+ L+     D   + + + + A     D   
Sbjct: 100 KEPLPRDAVLGTLVRFKQLKKWNLVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLGDFSR 159

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL- 286
           AE+    + K    P  IS + L   Y + +   KA      M+      + + Y  +L 
Sbjct: 160 AERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILK 219

Query: 287 SLYTNMGYKDEVLRIWKKMMS---LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           SL     YK E   I++ ++S    F K +   +  +I    K G++ +A  ++ +   +
Sbjct: 220 SLVEGDKYK-EAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQ---M 275

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           S  G P+      +        +   S Y+++   G+KP   ++ LL   Y K  + E+ 
Sbjct: 276 SERGIPQSTVTFNSLMSFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEA 335

Query: 404 LECFKKAI-GSVRKWVPDHRLITAAY------------------NKLEEQ---------- 434
              F++ +   +R     + ++  A+                  +++E            
Sbjct: 336 SAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLA 395

Query: 435 ----GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQ 485
                D+DGAE     ++  G   +  +Y +L++ Y+K   +  +  + ERM+   V+
Sbjct: 396 YVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVE 453



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 3/185 (1%)

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            ++ ++  ++++  KLG+F +AE +                  L+ AY    Q   AE+ 
Sbjct: 139 FSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAV 198

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNK 430
           ++R+ T G +P   T++++    ++  + ++    F+  +   R +  PD ++       
Sbjct: 199 FHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYM 258

Query: 431 LEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAE 489
            ++ GD   A  L   +   G   ST  +NSL+ ++    K    I ++MQ+  ++ D  
Sbjct: 259 YKKSGDYAQARKLFAQMSERGIPQSTVTFNSLM-SFEGDYKEVSSIYDQMQRAGLKPDVV 317

Query: 490 TQKVL 494
           +  +L
Sbjct: 318 SYSLL 322


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 148/331 (44%), Gaps = 3/331 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +++QN +  +A  ++++M E G       YN ++       ++D+    L E+ +
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   P+  TY  +++     ++  +A+K   E+++  + P+ +  + L + Y K     +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A +  + M  +    +   Y+ L++        D+   I+++M       +   Y  +I+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              KLG  +KA +I+DE      T +  + N+LL  +    ++E A+   + +  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  GY K G + +    F +    ++  VPD  + T   +      D++ A  
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
           +  T +     ST  +N+L+    K GK  L
Sbjct: 754 IFGTNKKGCASSTAPFNALINWVFKFGKTEL 784



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 172/403 (42%), Gaps = 14/403 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENL 133
           +++   +  R+  A+ V + M+ Q     ++ D   +  LI   SK + +  A +F   +
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQG----IAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 134 PDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            +    P+  T  A +  Y++  + A A+  +++M ECG L   +    ++N Y   G++
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573

Query: 192 DKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            +     + +  +    D  TY + +      +  + AE+ F E++   I PD  SY  L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + + K+   +KA++   EM +     N + Y+ LL  +   G  ++   +  +M     
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 693

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             N   Y  +I    K G+  +A  ++DE +      D  V   L+      N +E A +
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWV-PDHRLITAAY 428
            +     KG       +  L     K G+ E   E   + + GS  ++  P+        
Sbjct: 754 IFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMI 812

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           + L ++G+++ A+ L   ++NA  + T I Y SLL  Y K G+
Sbjct: 813 DYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 4/287 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  ++  ++ N +     ++L+E+K +  +PD+  YN  +   +     + A    +E+ 
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  + P+  +Y    S YI+      A   +KEM +     N+V  + L++ Y   G   
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E    ++ M+      +   YT +++ L K  + + AE I+ E        D     +L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             +     ++ A S ++ +V +G+ P    + +L  G+ + G++EK  E   +   SV+ 
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM--SVKG 692

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
             P+        +   + GD+  A  L   ++  G V  + +Y +L+
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 137/330 (41%), Gaps = 4/330 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           ++L+  Y + K   +   L+ +M +   +  P  Y  ++    S+G LD    +++E+  
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               P+VV Y   +      +    A +   E+K+  I PD   Y++L     K +  ++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A + L EM +   + N   Y + +S Y          +  K+M       N    T +I+
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLIN 565

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G+  +A + Y         GD +   +L+      ++++ AE  +  +  KGI P
Sbjct: 566 EYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              ++ +L  G+ K G M+K    F + +       P+  +           G+I+ A+ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVE--EGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           LL  +   G H +   Y +++  Y K+G +
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 143/371 (38%), Gaps = 56/371 (15%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ + K   +  AE  F  +  K   PD  S   L++ + +     +A ++ ++M 
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E G     + YN +L  +  +G+++K  ++L E+  K   P+ VTY   +       D  
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-------------- 272
            A + F E+K   + PD   Y+TL     ++   E+A T     +K              
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774

Query: 273 ------------------------RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                                   R  + N V Y+ ++      G  +    ++ +M + 
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
                   YT +++   K+G   +   ++DE  +     D  + ++++ A++       A
Sbjct: 835 NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894

Query: 369 -----ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVR-KWVP 419
                + F    V  G K   +T   L  G+ K G+M   EKV+E        VR +++P
Sbjct: 895 LVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME------NMVRLQYIP 948

Query: 420 DHRLITAAYNK 430
           D   +    N+
Sbjct: 949 DSATVIELINE 959



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/415 (18%), Positives = 157/415 (37%), Gaps = 57/415 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+    + K+  +A++L+ +M   G       Y+ +++  +     D    ++ E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 202 KK---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                N  P    Y+  +   + +   E A+  F  +  + + P   +Y++L   Y + +
Sbjct: 339 VSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +    L EM+KR    +   Y +++    + G  D    I K+M++   + N   YT
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I + ++   F  A  +  E +      D    N L+       +++ A SF   +V  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKK------------AIGSVRKWVPDHRLITA 426
           G+KP   T+     GY++  +     +  K+              G + ++    ++I A
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 427 --AYNKLEEQG-------------------DIDGAEHLLVTLRNAGHVSTEI--YNSLLR 463
             AY  + +QG                    +D AE +   +R  G ++ ++  Y  L+ 
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLIN 635

Query: 464 TYAKAGKM----------------PLIIVERMQKDNVQMDAETQKVLKITSEMPV 502
            ++K G M                P +I+  M         E +K  ++  EM V
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 148/331 (44%), Gaps = 3/331 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +++QN +  +A  ++++M E G       YN ++       ++D+    L E+ +
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   P+  TY  +++     ++  +A+K   E+++  + P+ +  + L + Y K     +
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A +  + M  +    +   Y+ L++        D+   I+++M       +   Y  +I+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              KLG  +KA +I+DE      T +  + N+LL  +    ++E A+   + +  KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  GY K G + +    F +    ++  VPD  + T   +      D++ A  
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
           +  T +     ST  +N+L+    K GK  L
Sbjct: 754 IFGTNKKGCASSTAPFNALINWVFKFGKTEL 784



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 172/403 (42%), Gaps = 14/403 (3%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENL 133
           +++   +  R+  A+ V + M+ Q     ++ D   +  LI   SK + +  A +F   +
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQG----IAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 134 PDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
            +    P+  T  A +  Y++  + A A+  +++M ECG L   +    ++N Y   G++
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573

Query: 192 DKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            +     + +  +    D  TY + +      +  + AE+ F E++   I PD  SY  L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + + K+   +KA++   EM +     N + Y+ LL  +   G  ++   +  +M     
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 693

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             N   Y  +I    K G+  +A  ++DE +      D  V   L+      N +E A +
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWV-PDHRLITAAY 428
            +     KG       +  L     K G+ E   E   + + GS  ++  P+        
Sbjct: 754 IFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMI 812

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           + L ++G+++ A+ L   ++NA  + T I Y SLL  Y K G+
Sbjct: 813 DYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 4/287 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y  ++  ++ N +     ++L+E+K +  +PD+  YN  +   +     + A    +E+ 
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  + P+  +Y    S YI+      A   +KEM +     N+V  + L++ Y   G   
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E    ++ M+      +   YT +++ L K  + + AE I+ E        D     +L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             +     ++ A S ++ +V +G+ P    + +L  G+ + G++EK  E   +   SV+ 
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM--SVKG 692

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
             P+        +   + GD+  A  L   ++  G V  + +Y +L+
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLV 739



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 137/330 (41%), Gaps = 4/330 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           ++L+  Y + K   +   L+ +M +   +  P  Y  ++    S+G LD    +++E+  
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               P+VV Y   +      +    A +   E+K+  I PD   Y++L     K +  ++
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A + L EM +   + N   Y + +S Y          +  K+M       N    T +I+
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLIN 565

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G+  +A + Y         GD +   +L+      ++++ AE  +  +  KGI P
Sbjct: 566 EYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              ++ +L  G+ K G M+K    F + +       P+  +           G+I+ A+ 
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVE--EGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           LL  +   G H +   Y +++  Y K+G +
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 143/371 (38%), Gaps = 56/371 (15%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ + K   +  AE  F  +  K   PD  S   L++ + +     +A ++ ++M 
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E G     + YN +L  +  +G+++K  ++L E+  K   P+ VTY   +       D  
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-------------- 272
            A + F E+K   + PD   Y+TL     ++   E+A T     +K              
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774

Query: 273 ------------------------RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
                                   R  + N V Y+ ++      G  +    ++ +M + 
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
                   YT +++   K+G   +   ++DE  +     D  + ++++ A++       A
Sbjct: 835 NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894

Query: 369 -----ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVR-KWVP 419
                + F    V  G K   +T   L  G+ K G+M   EKV+E        VR +++P
Sbjct: 895 LVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME------NMVRLQYIP 948

Query: 420 DHRLITAAYNK 430
           D   +    N+
Sbjct: 949 DSATVIELINE 959



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/415 (18%), Positives = 157/415 (37%), Gaps = 57/415 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   L+    + K+  +A++L+ +M   G       Y+ +++  +     D    ++ E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338

Query: 202 KK---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                N  P    Y+  +   + +   E A+  F  +  + + P   +Y++L   Y + +
Sbjct: 339 VSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +    L EM+KR    +   Y +++    + G  D    I K+M++   + N   YT
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I + ++   F  A  +  E +      D    N L+       +++ A SF   +V  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKK------------AIGSVRKWVPDHRLITA 426
           G+KP   T+     GY++  +     +  K+              G + ++    ++I A
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 427 --AYNKLEEQG-------------------DIDGAEHLLVTLRNAGHVSTEI--YNSLLR 463
             AY  + +QG                    +D AE +   +R  G ++ ++  Y  L+ 
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLIN 635

Query: 464 TYAKAGKM----------------PLIIVERMQKDNVQMDAETQKVLKITSEMPV 502
            ++K G M                P +I+  M         E +K  ++  EM V
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 169/392 (43%), Gaps = 17/392 (4%)

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 166
           SGD ++ LDL+ K+   +   + F           T S ++ S  ++     A +L ++M
Sbjct: 183 SGDTSLALDLLRKMDERNVKADVF-----------TYSTIIDSLCRDGCIDAAISLFKEM 231

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDK 225
              G     + YN ++      G+ +   Q+L+++  +   P+V+T+N+ +     +   
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A + + E+    I P+ I+Y++L   Y       +A   L  M +  C  + V ++SL
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSL 351

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  Y  +   DE +++++K+       N   Y+ ++    + G+ E AE ++ E  S+  
Sbjct: 352 IKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGV 411

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D     ILL    +  +LE A   +  L    +      + ++  G  K G++E    
Sbjct: 412 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWN 471

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            F       +   P+    T   + L ++G +  A  LL  +   G+   +  YN+L+R 
Sbjct: 472 LFCSL--PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRA 529

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           + + G +     ++E M+      DA + K++
Sbjct: 530 HLRDGDLTASAKLIEEMKSCGFSADASSIKMV 561



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 160/351 (45%), Gaps = 4/351 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A + + +  E G   +    N IV  + K      AL++   M+ + ++K     Y+  +
Sbjct: 154 AVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMD-ERNVKADVFTYSTII 212

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + +   + +A + F+ +  K       T ++L+    +  K  +   L++ M+    +
Sbjct: 213 DSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKII 272

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + +N ++++++  G+L +  ++ +E+  K  SP+ +TYN  +     QN    A   
Sbjct: 273 PNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              + +    PD +++++L   Y K++  ++     +++ KR    N V YS L+  +  
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  +    ++++M+SL    +   Y  ++  L   G+ EKA  I+++ +      D  +
Sbjct: 393 SGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVM 452

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             I++       ++E A + +  L  KG+KP   T+ ++  G  KKG + +
Sbjct: 453 YTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 503



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/274 (18%), Positives = 115/274 (41%), Gaps = 3/274 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K    PD  T+N  +     ++    A      + +    P+ ++Y+++ +   K    
Sbjct: 127 MKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDT 186

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L++M++R  + +   YS+++      G  D  + ++K+M +   K +   Y  +
Sbjct: 187 SLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSL 246

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K G++     +  +  S     +    N+L+  ++   +L+ A   Y  ++TKGI
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI 306

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  GY  + ++ +        + +     PD    T+      +   +D  
Sbjct: 307 SPNTITYNSLMDGYCMQNRLSEANNMLDLMVRN--NCSPDIVTFTSLIKGYCKVKRVDEG 364

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL 473
             L   +   G V+  + Y+ L++ + ++GK+ +
Sbjct: 365 MKLFRKISKRGLVANTVTYSILVQGFCQSGKLEI 398


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 129/275 (46%), Gaps = 5/275 (1%)

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK--VPQMLQELKK-NTS 206
           Y ++ +  +A  L++ M +       + +N ++N    +G L      ++L E+++    
Sbjct: 4   YARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLR 63

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TYN  ++AC+  ++ + A   F E+  ++  PD  +Y+ + S++ +    ++A   
Sbjct: 64  PDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELM 123

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            KE+ ++  + + V Y+SLL  +   G  + V R+ ++++    + +   Y  +I    K
Sbjct: 124 FKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGK 183

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
           +G  + A  +YDE  +I  T D     +L+ +    +++  A      +   G+KP   T
Sbjct: 184 MGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVT 243

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           +  L   Y K G+ +     F + + S  K  PD 
Sbjct: 244 FSALICAYAKSGRQDDAERTFDRMVESGVK--PDR 276



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 129/282 (45%), Gaps = 6/282 (2%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L+ ++ + G     + YN +++       LD    + +E+      PD+ TYN  ++   
Sbjct: 53  LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 112

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + AE  F EL +    PD ++Y++L   + K    E+     +E+ K   RK+ +
Sbjct: 113 RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGI 172

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++ +Y  MG  D  L ++ +M ++    +   YT ++ SL K+    +A  + +E 
Sbjct: 173 TYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEM 232

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
                       + L+ AY    + + AE  ++R+V  G+KP    + ++   + +  + 
Sbjct: 233 ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDET 292

Query: 401 EKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDG 439
            K++  ++  I     + PD   ++++ AA  K  E  +I+G
Sbjct: 293 RKLMVLYRAMIKD--GYKPDDGLYQVLLAALAKGNEHDEIEG 332



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 120/260 (46%), Gaps = 7/260 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  F+ L +K   PD  T ++LL+++ +       E + E++ + GF K  + YN M++
Sbjct: 120 AELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIH 179

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           +Y   G+LD    +  E++    +PD VTY + + +    +    A K   E+    + P
Sbjct: 180 MYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP 239

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             +++S L   Y K    + A  T   M +   + +R+AY  +L ++       +++ ++
Sbjct: 240 TLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLY 299

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + M+    K +D  Y  ++++L K  E ++ E +  + E++        P ++ +  I  
Sbjct: 300 RAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMN----PLVISSILIKA 355

Query: 363 NQLEMAESFYNRLVTKGIKP 382
             +    S   R   +G +P
Sbjct: 356 ECISQGASLLKRACLQGYEP 375



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 11/271 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPL-PYNHMLNLYISNGQLDKV 194
           PD  T + L+ +  Q     +A A+ E+M  SEC   +  L  YN M++++   G+  + 
Sbjct: 64  PDAITYNTLISACSQGSNLDDAVAVFEEMIASEC---RPDLWTYNAMVSVHGRCGKAQEA 120

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             M +EL +K   PD VTYN  L A A + D E  E+   EL K     D I+Y+T+  +
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y KM   + A     EM    C  + V Y+ L+     M    E  ++ ++M     K  
Sbjct: 181 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 240

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-ILLAAYINRNQLEMAESFY 372
              ++ +I +  K G  + AE  +D     SG    R+   ++L  +   ++       Y
Sbjct: 241 LVTFSALICAYAKSGRQDDAERTFDRMVE-SGVKPDRLAYLVMLDVFARSDETRKLMVLY 299

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             ++  G KP    +++L     K  + +++
Sbjct: 300 RAMIKDGYKPDDGLYQVLLAALAKGNEHDEI 330


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  GQ +KV Q+  E+  + +  PD VTY+  ++A      +++A +   E+
Sbjct: 164 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 223

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+ L +L+ K      A +  +EM  + CR +   Y+ L+      G  
Sbjct: 224 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 283

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-I 354
           DE    + +M     + +      +I+ L K G  + A  ++ E E++         N I
Sbjct: 284 DEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTI 343

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + A + ++++     S++ R+   GI P   T+ +L  G+ K  +MEK +   ++     
Sbjct: 344 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM--DE 401

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KAG++
Sbjct: 402 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 459



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 162/410 (39%), Gaps = 9/410 (2%)

Query: 65  EGHTV-HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           EGH        + ++    KL R   A+++   M+ +  ++  +  Y + + L  K    
Sbjct: 190 EGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMK-EIGMQPTTKIYTMLIALFFKFNDA 248

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A + FE +  +   PD  T + L+    +  +  EA     +M   G     +  N+M
Sbjct: 249 HGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNM 308

Query: 182 LNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTK 239
           +N     G+LD   ++ QE++     P VVTYN  + A      + +   ++ E +K++ 
Sbjct: 309 INFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 368

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P   +YS L   + K    EKA   L+EM+++       AY SL+         D   
Sbjct: 369 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 428

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            +++++       +   Y  +I  L K G  + A N++DE   +    D    N L++  
Sbjct: 429 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 488

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                L+ A S   R+   G  P   ++ ++  G  K G   + +E       S  +  P
Sbjct: 489 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVR--P 546

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
           D          L   G  + A  L+  +   G     I Y+S+L    K 
Sbjct: 547 DVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV 596



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCV 320
           +A T   +++ R C+    AY+S++ +  + G  ++V +++ +M +      D   Y+ +
Sbjct: 144 QAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSAL 203

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  KLG  + A  + +E + I      ++  +L+A +   N    A S +  +  +  
Sbjct: 204 ISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYC 263

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  L  G  K G++++    F +         PD   +    N L + G +D A
Sbjct: 264 RPDVFTYTELIRGLGKAGRIDEAYHFFCEM--QREGCRPDTVFMNNMINFLGKAGRLDDA 321

Query: 441 EHL---LVTLRNAGHVST--EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
             L   + TLR    V T   I  +L  + ++A ++P    ERM++  +   + T  +L
Sbjct: 322 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF-ERMKESGISPSSFTYSIL 379


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 139/365 (38%), Gaps = 39/365 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+  Y +N     A  L +++   GFL     Y  M+N +   G+ + V ++L E+K+
Sbjct: 241 NTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKE 300

Query: 204 ------------------------------------NTSPDVVTYNLWLAACASQNDKET 227
                                                  PD+ TYN  +    S+     
Sbjct: 301 RGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVRE 360

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE+      +  + P+  SY+ L   + K     +A+  L EM +R    + +AY +L+ 
Sbjct: 361 AEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVH 420

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G  D  L +  KMM      +   Y  ++S L K G F  A+ +  E    + T 
Sbjct: 421 GLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTP 480

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D  V   L+  +I    L+ A+  +   + +GI         +  GY K G M   L CF
Sbjct: 481 DAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCF 540

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYA 466
           K+    V    PD    +   +   +Q D+ GA  +  + L+     +   + SL+  + 
Sbjct: 541 KRMFNGVHS--PDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFC 598

Query: 467 KAGKM 471
           + G +
Sbjct: 599 RNGDL 603



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 6/329 (1%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
           K  E   L+EK    G +   + YN +++ Y  NG +++   + +ELK K   P V TY 
Sbjct: 217 KVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYG 276

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             + A   +   E  +K  +E+K+  +      ++ +     K     +AA  ++ M + 
Sbjct: 277 AMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIES 336

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
            C  +   Y++L++   + G   E   + +  +      N   YT +I +  K GE+ +A
Sbjct: 337 GCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRA 396

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             +  E      T D      L+   +   ++++A +  ++++ +GI P    + +L  G
Sbjct: 397 SELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSG 456

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGH 452
             KKG+     +   + +   +   PD  +     +     G++D A+ L  +T+     
Sbjct: 457 LCKKGRFPAAKQLLVEMLD--QNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGID 514

Query: 453 VSTEIYNSLLRTYAKAGKM--PLIIVERM 479
            S    N++++ Y K G M   L+  +RM
Sbjct: 515 TSVVECNAMIKGYCKYGMMNDALLCFKRM 543



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 1/251 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
            AL+H  V   +   A  + +KM E G L     YN +++     G+     Q+L E L 
Sbjct: 416 GALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLD 475

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N +PD       +       + + A+K F    +  ID   +  + +   Y K  +   
Sbjct: 476 QNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMND 535

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    K M       +   YS+++  Y         LR++  M+    K N   +T +I+
Sbjct: 536 ALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLIN 595

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              + G+  +AE +++E  S     +     IL+  +    +L  A  F+ +++     P
Sbjct: 596 GFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIP 655

Query: 383 CYTTWELLTWG 393
              T+  L  G
Sbjct: 656 NDATFNYLVNG 666



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 6/230 (2%)

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D    S+L  L  +  + ++    L+ M+ +       A S ++S Y   G   E L ++
Sbjct: 95  DGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISAYAGSGLVKEALELY 154

Query: 303 KKMMSLFAKMNDAEYTC--VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
             ++ +   + D  + C  +++ LV  G+ E A  +YDE    +G  D     I+     
Sbjct: 155 NTVIDVHNCVPDV-FACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLC 213

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              ++E       +   KG  P    +  L  GY K G +E+    FK+    V+ ++P 
Sbjct: 214 KEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKEL--KVKGFLPT 271

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            +   A  N   ++G  +  + LLV ++  G  VS +I+N ++    K G
Sbjct: 272 VKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHG 321



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 147/361 (40%), Gaps = 20/361 (5%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           E GHT+       +V  L        AL V + M ++  I   +  Y V +  + K    
Sbjct: 405 ERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKM-MERGILPDANIYNVLMSGLCKKGRF 463

Query: 124 SSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
            +A+     + D+   PD    + L+  ++++    EA+ L +   E G     +  N M
Sbjct: 464 PAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAM 523

Query: 182 LNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAF-LELKKTK 239
           +  Y   G ++      + +     SPD  TY+  +     QND   A + F L LKKT 
Sbjct: 524 IKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKT- 582

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+ +++++L + + +     +A    +EM       N V Y+ L+  +   G   +  
Sbjct: 583 CKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKAC 642

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSL-------VKLGEFEKAENIYDEWES--ISGTGDPR 350
             +++M+      NDA +  +++ L       +         N+  E+    IS   D R
Sbjct: 643 FFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFFGMMISDGWDWR 702

Query: 351 VP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLE 405
           +   N +L        ++ A   ++++++KG  P   ++  L  G   +G+++    V+ 
Sbjct: 703 IAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEGRLQDWNNVIP 762

Query: 406 C 406
           C
Sbjct: 763 C 763


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 19/347 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKL-VSGDYAVHLDLIS---KIRGLSSAENFF 130
           + +++EL K  R   AL + E M     IK     D A H  LI+   K   +  A+ F 
Sbjct: 53  HSVIQELCKAGRVDSALSLLETM-----IKRGYCPDMATHSMLINELCKADKIQEAQEFL 107

Query: 131 ENLPDKMRG-PDTC---SALLHSYVQNKKSAEAEALMEKM-SECGFLKCPLPYNHMLNLY 185
           + +   +     +C   ++LL+S  + KK  +A A+   M SE   +   + Y+ +++ +
Sbjct: 108 QGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGF 167

Query: 186 ISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
               +L +  ++  Q +  N  P+V TYN +L     +     A+  + E+      PD 
Sbjct: 168 CKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDV 227

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           I+YSTL   +      ++A    + M  R CR N V Y+ LL         DE   +++K
Sbjct: 228 ITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 287

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINR 362
           M+      +   YT ++     +G+ E+A  ++DE   +S   DP V   N LL  +   
Sbjct: 288 MVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM--VSKGHDPDVVAYNCLLKGFFRA 345

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            +   A   +  +V++  KP   +  ++  G  K  +++  +E F++
Sbjct: 346 GKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFER 392



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 148/339 (43%), Gaps = 6/339 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSG-DYAVHLDLISKIRGLSSAENFFENL-P 134
           ++ EL K  + + A E  + M      +  S   Y   L+ + K + +  A   F  +  
Sbjct: 90  LINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVS 149

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           ++   PD  S   L+  + +  +   AE L ++M +   +     YN  LN  +  G++ 
Sbjct: 150 ERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIA 209

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
               + +E+     SPDV+TY+  +   +     + A + F  +      P+ ++Y+ L 
Sbjct: 210 DAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLL 269

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K   P++A    ++M +R C  ++V Y++LL  + N+G  ++ + ++ +M+S    
Sbjct: 270 HGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD 329

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y C++    + G+  +A  ++    S     D    NI++       +L+ A   
Sbjct: 330 PDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEV 389

Query: 372 YNRL-VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           + R+    G  P   T+  L +G   + ++ + ++ FK+
Sbjct: 390 FERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE 428



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 11/289 (3%)

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKID---PD 243
           G++D    +L+ + K+   PD+ T+++ +   C +   +E  E  FL+     I      
Sbjct: 63  GRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE--FLQGMNRTISTRASS 120

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             SY++L +   K +   +A      M  +R+   + V+YS L+  +  +       +++
Sbjct: 121 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLY 180

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M+ L    N   Y   ++ L++ G    A+ +Y+E  S   + D    + L+  +   
Sbjct: 181 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLA 240

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            + + A   +  ++++G +P   T+  L  G  K+ + ++  E F+K +   R   PD  
Sbjct: 241 RKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE--RGCDPDKV 298

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
             T         G I+ A  +   + + GH    + YN LL+ + +AGK
Sbjct: 299 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 347



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 4/240 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           ++ A+  +E +      PD  T S L+H +   +K  +A  L E M   G     + YN 
Sbjct: 208 IADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNC 267

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L+      + D+  ++ +++ ++   PD VTY   L    +    E A + F E+    
Sbjct: 268 LLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 327

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            DPD ++Y+ L   + +   P +A    + M  R C+ + V+++ ++   +     D+ +
Sbjct: 328 HDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAV 387

Query: 300 RIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            ++++M        D   Y  +I  L       +A  ++ E + +  + DP   N+LL A
Sbjct: 388 EVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 149/355 (41%), Gaps = 21/355 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--MLNLYISNGQLDKVPQMLQ 199
           TC +++    +  +   A +L+E M + G+  CP    H  ++N      ++ +  + LQ
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGY--CPDMATHSMLINELCKADKIQEAQEFLQ 108

Query: 200 ELKKNTS---PDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYI 255
            + +  S       +YN  L +         A   F  +  +  + PD +SYS L   + 
Sbjct: 109 GMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFC 168

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K++   +A    K+M    C  N   Y++ L+     G   +   ++++M+S     +  
Sbjct: 169 KIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVI 228

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y+ +I       + ++A  +++   S     +    N LL      ++ + A   + ++
Sbjct: 229 TYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 288

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-- 433
           V +G  P   T+  L +G+   G++E+ +E F + +   +   PD      AYN L +  
Sbjct: 289 VERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVS--KGHDPD----VVAYNCLLKGF 342

Query: 434 --QGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 483
              G    A  L  V +       T  +N ++   +KA ++   + + ERM++D+
Sbjct: 343 FRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDH 397


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 185/417 (44%), Gaps = 42/417 (10%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ Y + K   EA 
Sbjct: 223 VSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEAR 282

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAAC 219
            L+++M+E G     + Y+ +L++Y+ N +  +   +  E+K+   P D+ T N+ +   
Sbjct: 283 VLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVY 342

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A++ F  L+K  I+P+ +SY+T+  +Y + EL  +A    + M+++   +N 
Sbjct: 343 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNV 402

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++++ +Y      ++   + ++M S   + N   Y+ +IS   K G+ ++A  ++ +
Sbjct: 403 VTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQK 462

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL--------- 390
             S     D  +   ++ AY     +  A+   + L      P  T   +L         
Sbjct: 463 LRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEA 522

Query: 391 TWGY---LKKGQME-------------------KVLECFKKAIGSVRKWVPDHRLITAAY 428
           TW +    + G+++                    V+E F+K       + PD   I    
Sbjct: 523 TWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM--RTAGYFPDSNAIAMVL 580

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKD 482
           N   +Q + + A+ +   ++  G V   E++  +L  Y+      ++  + ER++ D
Sbjct: 581 NAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFERLESD 637



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/325 (17%), Positives = 143/325 (44%), Gaps = 8/325 (2%)

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           E  +      YN +L   +   Q      +  E+++   +PD  TY+  + +   +   +
Sbjct: 150 EAKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFD 209

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           +A     ++++ ++  D + YS L  L  ++    KA +    +++     + VAY+S++
Sbjct: 210 SALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMI 269

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           ++Y       E   + K+M       N   Y+ ++S  V+  +F +A +++ E + ++  
Sbjct: 270 NVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCP 329

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NI++  Y   + ++ A+  +  L    I+P   ++  +   Y +     + +  
Sbjct: 330 LDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHL 389

Query: 407 FK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
           F+      + + V  +  +   Y K  E    + A +L+  +++ G     I Y++++  
Sbjct: 390 FRLMQRKDIEQNVVTYNTMIKIYGKTMEH---EKATNLVQEMQSRGIEPNAITYSTIISI 446

Query: 465 YAKAGKM--PLIIVERMQKDNVQMD 487
           + KAGK+     + ++++   V++D
Sbjct: 447 WGKAGKLDRAATLFQKLRSSGVEID 471


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 170/404 (42%), Gaps = 58/404 (14%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD----------TCSALLHSYVQNKKSAEAEALMEKMSE 168
           +I  +   E   +NL D M   D          T + L+ +Y +    +EA +L E+M  
Sbjct: 125 RIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMIS 184

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNL-----------W- 215
            GFL   + Y+ ++N     G L +   +L+E+ K   +P+ V Y +           W 
Sbjct: 185 DGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWE 244

Query: 216 ----------------LAACASQND-------KETAEKAFLELKKTKIDPDWISYSTLTS 252
                           L  C +  D        + AE  F  L K    P+ I+Y+ +  
Sbjct: 245 SFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMID 304

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            Y K+   + A + L++MEK+    N V YSS+++ YT  G  D  +RI KKM+      
Sbjct: 305 GYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMP 364

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMA 368
           N   Y  +I   +K G+ + A ++Y+E + ++G  +    + ++ A+IN      ++E A
Sbjct: 365 NAYIYATLIDGHLKAGKQDAAVDLYNEMK-LNGLEE---NSFIVDAFINNLKRGRKMEEA 420

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
           E     +++KG+      +  L  G+ K G+        +K   +  K+  D        
Sbjct: 421 EGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKF--DVVAYNVLI 478

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
           N L   G  D AE +   +R  G       YN+++  Y K GK+
Sbjct: 479 NGLLRLGKYD-AESVYSGIRELGLAPDRATYNTMINAYCKQGKL 521



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 9/356 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--KVPQMLQEL 201
           ++L+  + +  + + A  + EKM+E G     + YN ++N  +  G+ D   V   ++EL
Sbjct: 440 TSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESVYSGIREL 499

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               +PD  TYN  + A   Q   E A K + E+K   + P+ I+ + L     K    E
Sbjct: 500 --GLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETE 557

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   L EM       N   + +LL+  +     D +L++ K+++ +  K N   Y  +I
Sbjct: 558 RAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLI 617

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + L  LG  ++A  + +       + D    N L+  +   + +E A + Y +++ +G+ 
Sbjct: 618 TVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVS 677

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+ LL  G L  G M K  E   K   S     PD  L     +   + G+   A 
Sbjct: 678 PGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLD--PDASLYNTLISGHGKIGNKKEAI 735

Query: 442 HLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
                +   G V  T  YN L+  +AK GKM     ++  MQ   V  ++ T  +L
Sbjct: 736 KFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDIL 791



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H + ++    +A A   +M   G       YN +L   ++ G + K  ++L ++
Sbjct: 647 TYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKM 706

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +   PD   YN  ++      +K+ A K + E+    + P   +Y+ L   + K+   
Sbjct: 707 KDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKM 766

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-----SLFAKMNDA 315
           ++A   L EM+ R    N   Y  L+  + N+  + E+ RI KK       +LFA+MN+ 
Sbjct: 767 DQARELLNEMQVRRVPPNSSTYDILICGWCNLSKQPELDRISKKTYRTEARTLFAEMNEK 826

Query: 316 EYT-------CVISSLVKLGEFEKAENI 336
            +        C+ S+  + G    A+++
Sbjct: 827 GFVPCENTLACISSTFARPGMVVDAKHM 854


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +++ Y    QL+K   +    L+    P   TY L L A  +      AE    E++
Sbjct: 190 YNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQ 249

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  I P    Y+      +K     KA    + M+K  CR N   Y+ ++++Y       
Sbjct: 250 EHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPM 309

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             ++I+ +M S+  K N   YT ++++  + G  EKAE ++++ +      D    N L+
Sbjct: 310 SAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALM 369

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGS 413
            AY      + A   ++ +   G +P   ++ +L   Y + G   + E   E  K+    
Sbjct: 370 EAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQ--G 427

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +   +  H L+ +A+ +    G++   E ++  L  +G    T   N++L  YA+AG++
Sbjct: 428 MAPTMKSHMLLLSAHAR---SGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRL 483



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/446 (21%), Positives = 187/446 (41%), Gaps = 18/446 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  +++   + VCEW+  +   +     Y + +D   + R L+ AE+ +  + + 
Sbjct: 157 VAVQLRLNRQWDPIISVCEWIVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEA 216

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y   +    AE ++ +M E G       YN  L+  +      K 
Sbjct: 217 QCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKA 276

Query: 195 PQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ Q +KK     +  TY L +          +A K F E++      +  +Y+ L + 
Sbjct: 277 VEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNA 336

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    ++M++     +  AY++L+  Y+  G+      I+  M  +  + +
Sbjct: 337 FAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPD 396

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G   +AE  ++  +        +   +LL+A+     +   E    
Sbjct: 397 RASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMA 456

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           +L   G++P       +   Y + G+   ME++L     A GS    V  H +   AY +
Sbjct: 457 QLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLA-GSAD--VGSHNVAVNAYAR 513

Query: 431 LEEQGDIDGA-EHLLVTLRNAGHVSTEI--YNSLLRTYAKA---GKMPLIIVERMQKDNV 484
               G ++ A E +       G +  ++  + S +  YA+    GK  L I E M     
Sbjct: 514 AGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKC-LEIFEEMVDAGC 572

Query: 485 QMDAETQKVL--KITSEMPVSEVSSI 508
             DA T KVL    + E  V +V++I
Sbjct: 573 YPDAGTAKVLMAACSDERQVEQVAAI 598



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 8/250 (3%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   M+     +     Y + +D   +   
Sbjct: 354 QQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQ-HMGCEPDRASYNILVDAYGRAGL 412

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  FE+L  +   P   S   LL ++ ++      E +M ++ + G        N 
Sbjct: 413 HREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNA 472

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK- 239
           ML+ Y   G+LD + ++L  +    S DV ++N+ + A A        E AF  +++ K 
Sbjct: 473 MLHAYARAGRLDDMERLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKG 532

Query: 240 ----IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               ID D +S+++    Y + +   K     +EM    C  +      L++  ++    
Sbjct: 533 KKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACSDERQV 592

Query: 296 DEVLRIWKKM 305
           ++V  I + M
Sbjct: 593 EQVAAIVRSM 602


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 152/342 (44%), Gaps = 10/342 (2%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L  +VR  ++LK++    ++ EW+  Q        D  + +    K    S+AE     +
Sbjct: 108 LGTLVR-FKQLKKWHLVSQILEWVRTQSWWDFNEMDSLMLITAYGKQGNFSAAEKVLSYM 166

Query: 134 PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
                 P+  S  AL+ +Y +  +   AEA+  +M   G     + Y  +L  ++   + 
Sbjct: 167 NKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKF 226

Query: 192 DKVPQ----MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            +  +    +L E K    PD   +++ +       + E A + F  + +  +    ++Y
Sbjct: 227 KEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTY 286

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           ++L S     +   + +    +M++   + + ++Y+ L++ Y     +DE L ++++M+ 
Sbjct: 287 NSLMSFETNYK---EVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLD 343

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     Y  ++ +    G  E+A  ++        T D      +L+AY+N + +  
Sbjct: 344 AGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAG 403

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           AE+F+NRL   G++P   T+  L  GY K   ++K++E +++
Sbjct: 404 AENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEE 445



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 3/212 (1%)

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNT 205
           L S+  N K  E   + ++M   G     + Y  ++N Y    + D+   + +E L    
Sbjct: 289 LMSFETNYK--EVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGV 346

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            P    YN+ L A A     E A   F  +++ +  PD  SY+T+ S Y+       A  
Sbjct: 347 RPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAEN 406

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
               +++     N V Y +L+  Y      D+++  +++M     K N   +T ++ +  
Sbjct: 407 FFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYG 466

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           K  +F  A   Y E E      D +  NILL+
Sbjct: 467 KNKDFGSAVIWYKEMEQYGVPPDQKAKNILLS 498



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 10/208 (4%)

Query: 87  YKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP--D 141
           YK   ++ + M+   LQ D+      YA+ ++   K R    A   FE + D    P   
Sbjct: 296 YKEVSKIYDQMQRSGLQPDVI----SYALLINAYGKARREDEALAVFEEMLDAGVRPTHK 351

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
             + LL ++  +    +A  + + M    +      Y  ML+ Y++   +         L
Sbjct: 352 AYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRL 411

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K++   P+VVTY   +   A  N+ +   + + E++   +  +   ++T+   Y K +  
Sbjct: 412 KQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDF 471

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSL 288
             A    KEME+     ++ A + LLSL
Sbjct: 472 GSAVIWYKEMEQYGVPPDQKAKNILLSL 499


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 151/351 (43%), Gaps = 12/351 (3%)

Query: 130 FENLPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHML 182
           F +LP  +    G  + + LL ++V+ ++ ++A+A    +S   F +   P    YN +L
Sbjct: 106 FRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIIL 165

Query: 183 NLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
               + G +D+   +   L++   +PD VTY+  ++  A  +  + A     E+    + 
Sbjct: 166 RSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQ 225

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLR 300
            D + Y+ L S   +  + EKA    +++ +      N   Y  +L     +G   E   
Sbjct: 226 ADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGE 285

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +W +MM+   + +   Y  +I  L + G+ + A  +Y +        D  V N L+  + 
Sbjct: 286 VWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFC 345

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              +   A  F++     GI+   TT+ ++T G L  G + +  E  K+ + +     PD
Sbjct: 346 EVGRTGEAWKFWDSTGFSGIRQ-ITTYNIMTKGLLDSGMVSEATELLKQ-LENDASCSPD 403

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
                   + L E G  + A  +L   RN+G  +    Y+S++  + K G+
Sbjct: 404 KVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGR 454



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 115/266 (43%), Gaps = 5/266 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           L   EN     PDK+    T   L+H   +N  +  A  ++E     G       Y+ M+
Sbjct: 391 LKQLENDASCSPDKV----TFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMI 446

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
           N +  +G+     ++ + + K    P+   YN  +      +    A K ++E+      
Sbjct: 447 NRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCC 506

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P  I+Y+TL     K E  ++A++  KEM +R  + +   Y+SL+         D  LRI
Sbjct: 507 PTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRI 566

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           W +++    +++   +  +I  L   G+ ++A  IY E +  + + +    N L+  +  
Sbjct: 567 WDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYE 626

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTW 387
              ++ A S +  ++  G+KP   T+
Sbjct: 627 IGSIDKAASLWTAILDNGLKPDIVTY 652



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 104/262 (39%), Gaps = 37/262 (14%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M    + +G + +  ++L++L+ + S  PD VT+   +           A +   + 
Sbjct: 371 YNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDA 430

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           + +  + D  SYS++ + + K      A    K M K  C+ N   Y++L++ +  +   
Sbjct: 431 RNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKI 490

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE---------------- 339
           ++ ++I+ +M S         Y  +I  L K  ++++A ++  E                
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASL 550

Query: 340 ----------------WESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
                           W+ I   G   D  V NIL+    +  +++ A   Y  +  K  
Sbjct: 551 IRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNC 610

Query: 381 KPCYTTWELLTWGYLKKGQMEK 402
            P   T+  L  G+ + G ++K
Sbjct: 611 SPNLVTYNTLMDGFYEIGSIDK 632



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/259 (17%), Positives = 96/259 (37%), Gaps = 36/259 (13%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           +AL++ + +  K  +A  +  +M+  G     + YN +++      +  +   + +E L+
Sbjct: 478 NALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLE 537

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD+ TY   +         + A + + E+    +  D + ++ L          ++
Sbjct: 538 RGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDE 597

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     EM+++ C  N V Y++L+  +  +G  D+   +W  ++    K +   Y   I 
Sbjct: 598 AFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIK 657

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L                         R P  +L                N ++  GI P
Sbjct: 658 GLCSCN---------------------RTPEGVL--------------LLNEVLATGIMP 682

Query: 383 CYTTWELLTWGYLKKGQME 401
              TW +L    +K G ++
Sbjct: 683 TVITWSILVRAVIKYGPIQ 701


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 106/480 (22%), Positives = 207/480 (43%), Gaps = 22/480 (4%)

Query: 5   SLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAIT--MRKW 62
           S  A   +  V +  ++    LG+  E +  G    L ++ + LV +     +T   R +
Sbjct: 68  SAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKKEVVLVNSIVEQPLTGLSRFF 127

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
                 + + +L  +V+ L     ++ A+ + EW+ L  +   +  D+ V +++  +I G
Sbjct: 128 DSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV-IEIFVRILG 186

Query: 123 LSSAENFFENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
             S  +    L DK+   +        + +LH+Y +  K  +A  L E+M E G     +
Sbjct: 187 RESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLV 246

Query: 177 PYNHMLNLYISNGQL-DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
            YN +L+++   G+   K+  +L E++ K    D  T +  L+ACA +     A++ F E
Sbjct: 247 TYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAE 306

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           LK    +P  ++Y+ L  ++ K  +  +A + LKEME+ +C  + V Y+ L++ Y   G+
Sbjct: 307 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGF 366

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             E   + + M       N   YT VI +  K G+ ++A  ++   +      +    N 
Sbjct: 367 SKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNA 426

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIG 412
           +L+    +++          + + G  P   TW  +      KG  + V   F+  K+ G
Sbjct: 427 VLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCG 486

Query: 413 SVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
               + PD      + +AY +   +  +D ++      R   +     YN+LL   A+ G
Sbjct: 487 ----FEPDRDTFNTLISAYGRCGSE--VDASKMYGEMTRAGFNACVTTYNALLNALARKG 540



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 8/280 (2%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD+    DT + L+ +Y +     +A  +  +M+  GF  C   YN +LN     G    
Sbjct: 489 PDR----DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ ++K K   P   +Y+L L   A   +    E+    +K+ +I P W+   TL  
Sbjct: 545 GENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLL 604

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K      +       +K   + + V ++S+LS++T     D+   I + +       
Sbjct: 605 ANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSP 664

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  ++   V+ GE  KAE I    E      D    N ++  +  R  ++ A    
Sbjct: 665 DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRML 724

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKK 409
           + +  +GI+PC  T+     GY   G   ++E V+EC  K
Sbjct: 725 SEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAK 764



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML+++  N   D+   +L+ ++++  SPD+VTYN  +     + +   AE+    L+
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K+++ PD +SY+T+   + +  L ++A   L EM +R  R     Y++ +S YT MG   
Sbjct: 694 KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFA 753

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           E+  + + M     + N+  +  V+    + G++ +A
Sbjct: 754 EIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEA 790



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 155/392 (39%), Gaps = 41/392 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++ +Y +  K  EA  L   M E G +     YN +L+L     + +++ +ML ++
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K N  SP+  T+N  LA C ++   +   + F E+K    +PD  +++TL S Y +    
Sbjct: 448 KSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 507

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A+    EM +         Y++LL+     G       +   M S   K  +  Y+ +
Sbjct: 508 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLM 567

Query: 321 ISSLVKLGEF---EKAEN------IYDEW-------------ESISGT------------ 346
           +    K G +   E+ EN      I+  W              +++G+            
Sbjct: 568 LQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGY 627

Query: 347 -GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D  + N +L+ +   N  + AE     +   G+ P   T+  L   Y+++G+  K  E
Sbjct: 628 KPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEE 687

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             K    S  K  PD             +G +  A  +L  +   G       YN+ +  
Sbjct: 688 ILKTLEKSQLK--PDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSG 745

Query: 465 YAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           Y   G    I  ++E M K++ + +  T K++
Sbjct: 746 YTAMGMFAEIEDVIECMAKNDCRPNELTFKMV 777



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 80/183 (43%), Gaps = 2/183 (1%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K    PD+V +N  L+     N  + AE     +++  + PD ++Y++L  +Y++     
Sbjct: 624 KHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECW 683

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA   LK +EK   + + V+Y++++  +   G   E +R+  +M     +     Y   +
Sbjct: 684 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S    +G F + E++ +         +     +++  Y    +   A  F +++  K   
Sbjct: 744 SGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI--KTFD 801

Query: 382 PCY 384
           PC+
Sbjct: 802 PCF 804


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQE 200
           T  A+++ + +  K    + L+ +MSE G       YN++++    +G +++    +   
Sbjct: 244 TYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWM 303

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K    PD+ TYN+ +    S  +   AE+   +  K  + P+ +SY+ L   Y K    
Sbjct: 304 IKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEY 363

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L +M +R  + + V Y++L+      G  D  L +  KM+      +   Y  +
Sbjct: 364 LRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVL 423

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +S L K G    A+ +  E    +   D  +   L+  +I     E A+  +   + KGI
Sbjct: 424 MSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGI 483

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    +  +  GY K G M+  L CFK+ I  +    PD    +   +   +  D+ GA
Sbjct: 484 DPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHS--PDEFTYSTIIDGYIKMNDLHGA 541

Query: 441 EHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             +  + ++ A   +   Y  L+  +  +G +
Sbjct: 542 LRMFGLMVKGACKPNVVTYTLLINGFCLSGDI 573



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 16/289 (5%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEK 165
           G+Y   LDL+ K             + ++   PD  T +AL+H  +   +   A  +  K
Sbjct: 361 GEYLRALDLLIK-------------MSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNK 407

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQND 224
           M E G L     YN +++     G+L     +L E L +N +PD       +       D
Sbjct: 408 MVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGD 467

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            E A+K F    +  IDP  + Y+ +   Y K  + + A    K M +     +   YS+
Sbjct: 468 FEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYST 527

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++  Y  M      LR++  M+    K N   YT +I+     G+  +AE  + +  S+ 
Sbjct: 528 IIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLR 587

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
              +     IL+  +     L  A SF+ +++ +   P   T+  L  G
Sbjct: 588 LKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNG 636



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 129/306 (42%), Gaps = 6/306 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +++ Y   G  ++   + +ELK K   P V TY   +     +   E  +K  +E+ 
Sbjct: 210 YNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMS 269

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  +D     Y+ +     K     +AA T+  M K  C  +   Y+ L++   + G   
Sbjct: 270 ERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVH 329

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +  ++ ++ +      N   YT +I +  K GE+ +A ++  +        D      L+
Sbjct: 330 KAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALI 389

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
              I   ++++A +  N++V KG+ P    + +L  G  KKG++        + +   + 
Sbjct: 390 HGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLD--QN 447

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM--PL 473
             PD  +     +     GD + A+ L  +T+          YN++++ Y K G M   L
Sbjct: 448 VAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDAL 507

Query: 474 IIVERM 479
           +  +RM
Sbjct: 508 LCFKRM 513



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 6/208 (2%)

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC--VIS 322
           + LK M+ +     R A+S ++S++ + G  D  L  ++  + +   + D  ++C  +++
Sbjct: 87  SLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDV-FSCNSLLN 145

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            LVK G+ E A  +YDE    +G  D     I++       ++E       +   +G  P
Sbjct: 146 VLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMP 205

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               +  L  GY KKG  E+    FK+    ++ ++P  +   A  N   ++G  +  + 
Sbjct: 206 NIVFYNTLIDGYCKKGDTERANVLFKEL--KMKGFLPTVKTYGAIINGFCKKGKFEVVDK 263

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           LLV +   G  VS  IYN+++    K G
Sbjct: 264 LLVEMSERGLDVSIHIYNNIIDAQFKHG 291



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 109/280 (38%), Gaps = 40/280 (14%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LP+K+    + + L+H+Y +  +   A  L+ KMSE G     + Y  +++  I  G++D
Sbjct: 344 LPNKV----SYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVD 399

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
               +  ++ +K   PD   YN+ ++    +     A+    E+    + PD    +TL 
Sbjct: 400 VALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLV 459

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +I+    E+A    +   ++      V Y++++  Y   G   + L  +K+M+     
Sbjct: 460 DGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHS 519

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            ++  Y+ +I                                     YI  N L  A   
Sbjct: 520 PDEFTYSTIID-----------------------------------GYIKMNDLHGALRM 544

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           +  +V    KP   T+ LL  G+   G + +  + FK+ +
Sbjct: 545 FGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQML 584



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+ +++ YI    L    +M   + K    P+VVTY L +       D   AEK F ++ 
Sbjct: 525 YSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQML 584

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
             ++ P+ ++Y+ L   + K     KA +  ++M    C  N V Y+ L++  TN
Sbjct: 585 SLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTN 639



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 34/323 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +  + K   L +A+     + D+   PD    + L+  ++++    EA+ L E   
Sbjct: 420 YNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTI 479

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKV----PQMLQELKKNTSPDVVTYNLWLAACASQN 223
           E G     + YN M+  Y   G +        +M+Q L    SPD  TY+  +      N
Sbjct: 480 EKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLH---SPDEFTYSTIIDGYIKMN 536

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D   A + F  + K    P+ ++Y+ L + +       +A  T K+M     + N V Y+
Sbjct: 537 DLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYT 596

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF-------EKAEN- 335
            L+  +       +    +++M+      ND  Y  +++ L    +F       E+ EN 
Sbjct: 597 ILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENS 656

Query: 336 ---------IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
                    I D W+  + +      N +L        ++ A    +++++KG  P   +
Sbjct: 657 LVLESFGMMISDGWDRRAAS-----YNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVS 711

Query: 387 WELLTWGYLKKGQME---KVLEC 406
              L  G   +G+ +    V+ C
Sbjct: 712 LVALLHGLCLEGRSQDWNNVISC 734


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 177/429 (41%), Gaps = 19/429 (4%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           R+A    R++ E G   +    N I+  L +L + K A  +   ME + ++  V   Y+V
Sbjct: 234 RTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVS-YSV 292

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +D   ++  L       E L  K   P+  T ++++    +  +  EAE ++  M    
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
                + Y  +++ +  +G +    ++  E+K K   PD VTY   +           A 
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           K F E+    + PD ++Y+ L   Y K    ++A +   +M ++    N V Y++L+   
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  D    +  +M     + N   Y  +I+ L K+G  E+A  + +E +      D 
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDT 532

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
                ++ AY    ++  A      ++ KG++P   T+ +L  G+   G +E      ++
Sbjct: 533 ITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDG----ER 588

Query: 410 AIGSVRKWVPDHRLITAA--YNKLEEQGDIDGAEHLLVTLRNAGHV-----STEIYNSLL 462
            I    KW+ D  ++  A  +N L +Q  I       + +    H       T  YN L+
Sbjct: 589 LI----KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644

Query: 463 RTYAKAGKM 471
           + + KA  M
Sbjct: 645 KGHCKARNM 653



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 9/301 (2%)

Query: 118 SKIRGLSSA------ENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           S I GL  A         F  +  K   PD  T +AL+  Y +  +  EA +L  +M E 
Sbjct: 397 SMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEK 456

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
           G     + Y  +++     G++D   ++L E+ +K   P+V TYN  +       + E A
Sbjct: 457 GLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQA 516

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            K   E+      PD I+Y+T+   Y KM    KA   L+ M  +  +   V ++ L++ 
Sbjct: 517 VKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNG 576

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  R+ K M+      N   +  ++              IY    +     D
Sbjct: 577 FCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPD 636

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               NIL+  +     ++ A   +  +V KG      ++  L  G+ K+ + E+  + F+
Sbjct: 637 TNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFE 696

Query: 409 K 409
           +
Sbjct: 697 E 697



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 89/199 (44%), Gaps = 3/199 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K+  +  A    E +      PDT +   ++ +Y +  + A+A  L+  M 
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIML 559

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKE 226
           + G     + +N ++N +  +G L+   ++++  L K   P+  T+N  +     +N+  
Sbjct: 560 DKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMR 619

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
              + +  +    + PD  +Y+ L   + K    ++A    KEM ++       +Y+SL+
Sbjct: 620 ATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLI 679

Query: 287 SLYTNMGYKDEVLRIWKKM 305
             +      +E  +++++M
Sbjct: 680 KGFYKRKKFEEARKLFEEM 698


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D + K   L  A  +F  +  K   P+  T + L++ + +  K   A  L+++M 
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 69

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKE 226
           E G     + Y+ +++ +    ++D   ++ +++ +N   P++VTYN  L+        +
Sbjct: 70  ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 129

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   E+++  + PD  SY TL +   K    + A    ++     C  + VAYS+L+
Sbjct: 130 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +     G  DE  ++++KM     + +   +T ++  L K    ++A+ + +  E  + T
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCT 249

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            +    + L+       Q+  A+  + R++ +GI+P   T+  L  G+     ++  L
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 149/331 (45%), Gaps = 4/331 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + ++    +  +  EA     KM + G +     YN ++N +    ++ +   +L+E+K+
Sbjct: 11  TIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKE 70

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +P+VVTY+  +     Q   +TA K F ++ +    P+ ++Y+TL S   +  L ++
Sbjct: 71  SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDE 130

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM +R  + ++ +Y +L++     G  D  L++++   +     +   Y+ +I+
Sbjct: 131 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIA 190

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L K G  ++A  ++++    S   D      L+      ++L+ A+     +  +   P
Sbjct: 191 GLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTP 250

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L  G  K GQ+    E FK+ I  VR   P+     +  +       +D A  
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMI--VRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP 472
           L+  +   G +   I YN+L+    K G+ P
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAP 339



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 165/427 (38%), Gaps = 45/427 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++   K+  +  A    + + +    P+  T S ++H + +  K   A  L  +M 
Sbjct: 45  YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 104

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK------------------------ 203
           E G +   + YN +L+    NG +D+  ++L E+++                        
Sbjct: 105 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 164

Query: 204 ------------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                       +  PDVV Y+  +A        + A K F ++++   +PD ++++ L 
Sbjct: 165 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALM 224

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K +  ++A   L+ ME R C  N + YSSL+      G   +   ++K+M+    +
Sbjct: 225 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 284

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y  +I         + A  + +E  +     D    N L+       +   A   
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 344

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  +  K   P   T+  L  G+ K  +++     F   +   +  +PD    +      
Sbjct: 345 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK--QAVLPDVVTFSTLVEGY 402

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
              G +D AE LL  +  A   S ++  Y SL+  + K G+M     +++RM K   Q +
Sbjct: 403 CNAGLVDDAERLLEEMV-ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 488 AETQKVL 494
             T   L
Sbjct: 462 VVTYTAL 468



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 160/385 (41%), Gaps = 9/385 (2%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + K   +  A   FE+  +    PD    S L+    +  +  EA  L EKM E      
Sbjct: 157 LCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPD 216

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + +  +++      +L +  Q+L+ ++ +N +P+V+TY+  +           A++ F 
Sbjct: 217 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 276

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +    I+P+ ++Y++L   +      + A   ++EM    C  + + Y++L+      G
Sbjct: 277 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTG 336

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E  R++  M + F   +   Y+C+I    KL   + A  ++D+    +   D    +
Sbjct: 337 RAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFS 396

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+  Y N   ++ AE     +V     P   T+  L  G+ K G+M +     K+   +
Sbjct: 397 TLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM--A 454

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMP 472
            R   P+    TA  +     G    A  LL  +   G     I Y SL+  +   G + 
Sbjct: 455 KRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLE 514

Query: 473 LI--IVERMQKD-NVQMDAETQKVL 494
               ++ER+++D N + D    +V+
Sbjct: 515 EARKMLERLERDENCKADMFAYRVM 539



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 3/265 (1%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +V+T+ + +      N    A   F ++KK    P+  +Y+ L + + K+    +A   L
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           KEM++     N V YS+++  +      D   +++++M+      N   Y  ++S L + 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G  ++A  + DE        D    + L+A      +++MA   +         P    +
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  G  K G++++  + F+K         PD    TA  + L +   +  A+ +L T+
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKM--RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGKM 471
            +       I Y+SL+    K G++
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQV 268


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 5/294 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L+ A   F+ +  +   PDT +   L+    +    +EA  + E M+E G       YN 
Sbjct: 287 LNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNA 346

Query: 181 MLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKT 238
           +++ Y  + Q+D+  ++L   + K  +P++ +YN+ +   C S+   E A++   E+ + 
Sbjct: 347 LMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE-AKRLLSEMSEK 405

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            + PD ++YSTL     ++  P +A    KEM       + +AYS LL  +   G+ DE 
Sbjct: 406 NLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEA 465

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           L++ K+M     K N   YT +I  +   G+ E A+ ++ +  +     D    N+++  
Sbjct: 466 LKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKG 525

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            +     + A  F+ ++   G  P   ++ ++  G+L+       ++   + +G
Sbjct: 526 LLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVG 579



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 138/315 (43%), Gaps = 4/315 (1%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A ++M KM + G     + +N ++N   + G++ +   +  E+      P+V++YN  + 
Sbjct: 150 AVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVIN 209

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 +   A + F ++++ +  P+ ++Y+T+     K  L  +A   L EM  R    
Sbjct: 210 GLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V Y+++L  + ++G  +E  R++K+M+      +   +  ++  L K G   +A  + 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +         +    N L+  Y   NQ++ A      ++ KG  P  +++ +L  GY K 
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
            +M +      +   S +   PD    +     L + G    A +L   + ++G +   +
Sbjct: 390 KRMNEAKRLLSEM--SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLM 447

Query: 458 -YNSLLRTYAKAGKM 471
            Y+ LL  + K G +
Sbjct: 448 AYSILLDGFCKHGHL 462



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 173/441 (39%), Gaps = 52/441 (11%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           E  + +  + K K+Y  A+ +C  M+L     +    Y++++ LI+ +  LS  + F  +
Sbjct: 98  EFGKFLGSIAKKKQYSSAVSLCNQMDL---FGVTHNVYSLNV-LINCLCRLSHVD-FAVS 152

Query: 133 LPDKMR----GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           +  KM      PD  T + L++      K  EA  L  +M   G     + YN ++N   
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212

Query: 187 SNGQLDKVPQMLQELKKN------------------------------------TSPDVV 210
            NG      ++ +++++N                                      PDVV
Sbjct: 213 KNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVV 272

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TYN  L    S      A + F E+    + PD ++++ L     K  +  +A    + M
Sbjct: 273 TYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETM 332

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            ++    N   Y++L+  Y      DE +++   M+      N + Y  +I+   K    
Sbjct: 333 TEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRM 392

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +A+ +  E    + T D    + L+       +   A + +  + + G+ P    + +L
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSIL 452

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
             G+ K G +++ L+  K+     R+  P+  L T     +   G ++ A+ L   L   
Sbjct: 453 LDGFCKHGHLDEALKLLKEM--HERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSAD 510

Query: 451 GHVSTEI--YNSLLRTYAKAG 469
           G +  +I  YN +++   K G
Sbjct: 511 G-IRPDIWTYNVMIKGLLKEG 530



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/325 (19%), Positives = 135/325 (41%), Gaps = 14/325 (4%)

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207
           H ++      E  +L +K   CGF       N   ++ I     D +    + ++ N  P
Sbjct: 46  HHHITTSACTEKPSLPQK--HCGF-----GSNTSNDISID----DALTSFYRMVRMNPRP 94

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
            VV +  +L + A +    +A     ++    +  +  S + L +   ++   + A + +
Sbjct: 95  SVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVM 154

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            +M K   + + + +++L++   N G   E + ++ +M+    + N   Y  VI+ L K 
Sbjct: 155 GKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKN 214

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G    A  ++ + E   G  +    N ++ +      +  A  F + +V +GI P   T+
Sbjct: 215 GNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTY 274

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             +  G+   GQ+ +    FK+ +G  R  +PD        + L ++G +  A  +  T+
Sbjct: 275 NTILHGFCSLGQLNEATRLFKEMVG--RNVMPDTVTFNILVDGLCKEGMVSEARCVSETM 332

Query: 448 RNAG-HVSTEIYNSLLRTYAKAGKM 471
              G   +   YN+L+  Y    +M
Sbjct: 333 TEKGAEPNAYTYNALMDGYCLHNQM 357



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/243 (19%), Positives = 97/243 (39%), Gaps = 42/243 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y + ++   K + ++ A+     + +K   PDT   S L+    Q  +  EA  L ++M 
Sbjct: 379 YNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMC 438

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK------------------------ 203
             G L   + Y+ +L+ +  +G LD+  ++L+E+ +                        
Sbjct: 439 SSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLE 498

Query: 204 ------------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                          PD+ TYN+ +     +   + A + F +++     PD  SY+ + 
Sbjct: 499 VAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVII 558

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +++ +    A   + EM  +    +   +  LL L ++    DE++  + +  S   K
Sbjct: 559 QGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESH----DEIISRFMRGSSQHTK 614

Query: 312 MND 314
           MND
Sbjct: 615 MND 617


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 3/274 (1%)

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           N F  +  +   PD  T + LL +        +A  + + M+E G +   + Y  +++ +
Sbjct: 174 NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTF 233

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
             + QL +V ++L+E++ +  SPD+  YN  + A A   +   A   F ++++    PD 
Sbjct: 234 AGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDV 293

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +YSTL  +Y      E+  +   +M++ +       Y+SL+ ++   GY  E + ++  
Sbjct: 294 ETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHD 353

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+    K +DA Y+ ++S   + G   +A  I+    +   T        L+++Y     
Sbjct: 354 MVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAM 413

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            + A   Y R+   G+ P  + ++ L  GY K G
Sbjct: 414 YKDALVSYYRIREAGLDPQVSAYDALIQGYAKGG 447



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 13/277 (4%)

Query: 160 EALMEKMSECGFLKCP--------LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVV 210
           E L+EK SE  F   P          +  ++N Y  NGQ +    +L  +KK    P+++
Sbjct: 95  EGLLEKCSEI-FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLI 153

Query: 211 TYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           TYN  L AC+    D E     F +++   I PD I+Y+TL S      L E+AA   K 
Sbjct: 154 TYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKT 213

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +     + V Y SL+  +        V  + ++M       + A Y  +I +    G 
Sbjct: 214 MNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGN 273

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
              A  ++ + +      D    + LL  Y N+   E   S ++ +      P   T+  
Sbjct: 274 VHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNS 333

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
           L   + + G  ++ +  F   + S  K  PD    +A
Sbjct: 334 LIQVFGEGGYFQESINLFHDMVDSGVK--PDDATYSA 368


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 1/253 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H+     K  EA+ +++ M + G +   + YN ++N Y   G   K   +  E+
Sbjct: 378 TYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P +VTY   +   + +N  + A+  F ++ +    PD I ++ L   +      
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   LKEM+KR    + V Y++L+      G  +E   + K+M     + +   Y  +
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTL 557

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   K G+   A  I DE  SI         N L+       Q ++AE     +V+KGI
Sbjct: 558 ISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617

Query: 381 KPCYTTWELLTWG 393
            P  +T+  L  G
Sbjct: 618 TPDDSTYFSLIEG 630



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 141/304 (46%), Gaps = 20/304 (6%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N M+N+    G+L K    +  ++     P+VVTYN  +    S+   E A      +K
Sbjct: 239 FNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK 298

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----- 291
              ++PD  +Y +L S   K    E+A+  L++M++       V Y++L+  Y N     
Sbjct: 299 NRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLV 358

Query: 292 --MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              GY+DE++R  + ++   +      Y  +I +L   G+ ++A+ +  +        D 
Sbjct: 359 KAFGYRDEMVR--RAILPTVST-----YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDS 411

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              NIL+  Y      + A + ++ +++KGI+P   T+  L +   K+ +M+   + F+K
Sbjct: 412 ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEK 471

Query: 410 AIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
            I   R+   PD  +  A  +     G++D A  LL  +     V  E+ YN+L++   +
Sbjct: 472 II---REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCR 528

Query: 468 AGKM 471
            GK+
Sbjct: 529 EGKV 532



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 5/270 (1%)

Query: 136 KMRG--PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           K RG  PD  T  +L+    +  K  EA  ++EKM E G L   + YN +++ Y + G L
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDL 357

Query: 192 DKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            K      E+ ++   P V TYNL + A   +   + A+    ++  + I PD I+Y+ L
Sbjct: 358 VKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + Y +    +KA     EM  +  +   V Y+SL+ + +          +++K++   A
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             +   +  +I      G  ++A  +  E +  +   D    N L+       ++E A  
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARE 537

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
               +  +GI+P + ++  L  GY K+G +
Sbjct: 538 LLKEMKRRGIRPDHISYNTLISGYSKRGDI 567



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L++   +  +   A+ L EK+   G     + +N +++ + +NG LD+   +L+E+
Sbjct: 448 TYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM 507

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+N  PD VTYN  +     +   E A +   E+K+  I PD ISY+TL S Y K    
Sbjct: 508 DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDI 567

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A T   EM         + Y++L+         D    + K+M+S     +D+ Y  +
Sbjct: 568 NDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627

Query: 321 ISSLVKLGEFEKAEN 335
           I  + K+ +  +A +
Sbjct: 628 IEGIGKVDDSSEASD 642



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 5/277 (1%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            M++E  K   P + T+N  L+     N  ET    + E+ + KI     +++ + ++  
Sbjct: 190 DMMKE--KGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLC 247

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K    +KA   +  ME    + N V Y++++  Y + G  +    +   M +   + +  
Sbjct: 248 KEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSY 307

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +IS + K G+ E+A  I ++ + I         N L+  Y N+  L  A  + + +
Sbjct: 308 TYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEM 367

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           V + I P  +T+ LL      +G+M++  +   K +G     VPD        N     G
Sbjct: 368 VRRAILPTVSTYNLLIHALFLEGKMDEA-DGMIKDMGD-SGIVPDSITYNILINGYCRCG 425

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           +   A +L   + + G   T + Y SL+   +K  +M
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRM 462



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 11/265 (4%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           + +++ + AC      + A + F  +K+  + P   +++ + SL++K+   E       E
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +   +     ++ ++++    G   +       M +L  K N   Y  VI      G 
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E A  + D  ++     D      L++      +LE A     ++   G+ P   T+  
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 390 LTWGYLKKGQMEKVL----ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           L  GY  KG + K      E  ++AI      +P         + L  +G +D A+ ++ 
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAI------LPTVSTYNLLIHALFLEGKMDEADGMIK 400

Query: 446 TLRNAGHVSTEI-YNSLLRTYAKAG 469
            + ++G V   I YN L+  Y + G
Sbjct: 401 DMGDSGIVPDSITYNILINGYCRCG 425


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 166/380 (43%), Gaps = 12/380 (3%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MRGPDTCSALLH 148
           AL V +W E Q   K  + +Y   ++ + KI+      N  +++  K +   DT + +  
Sbjct: 113 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISR 172

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SP 207
            Y + +K  EA     KM + GF      +N ML++   +  +    ++  ++KK    P
Sbjct: 173 RYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEP 232

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           D+ +Y + L     + +     + + E+K    +PD ++Y  + + Y K +  ++A    
Sbjct: 233 DIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFF 292

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            EME+R C+ +   + SL++   +    ++ L  +++  S    +    Y  ++ +    
Sbjct: 293 NEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWS 352

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
              E A    DE  S     + R  +I+L   I   + + A   Y ++     +P  +T+
Sbjct: 353 QRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM---SCEPTVSTY 409

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA-----EH 442
           E++   +  K +++  ++ + +  G  +  +P   + ++    L  +  +D A     E 
Sbjct: 410 EIMVRMFCNKERLDMAIKIWDEMKG--KGVLPGMHMFSSLITALCHENKLDEACEYFNEM 467

Query: 443 LLVTLRNAGHVSTEIYNSLL 462
           L V +R  GH+ + +  +LL
Sbjct: 468 LDVGIRPPGHLFSRLKQTLL 487



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 7/332 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           I R   + ++ K A+     ME  Y  K+ S D+   LD++SK R +  A+  F+ +  K
Sbjct: 170 ISRRYARARKVKEAITAFHKME-DYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKK 228

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  + + LL  + Q         +  +M + GF    + Y  ++N Y    + D+ 
Sbjct: 229 RFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEA 288

Query: 195 PQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            +   E+ ++N  P    +   +    S+     A + F   K +    +  +Y+ L   
Sbjct: 289 VRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 348

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y   +  E A  T+ EM  +    N   Y  +L     M    E   +++KM     +  
Sbjct: 349 YCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMS---CEPT 405

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            + Y  ++         + A  I+DE +         + + L+ A  + N+L+ A  ++N
Sbjct: 406 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 465

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            ++  GI+P    +  L    L +G+ +KV +
Sbjct: 466 EMLDVGIRPPGHLFSRLKQTLLDEGRKDKVAD 497


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 169/381 (44%), Gaps = 19/381 (4%)

Query: 135 DKMRG----PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           D M G    PD    + L     +N ++++A  +++ M + G     + YN ++N     
Sbjct: 293 DTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKE 352

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLEL-KKTKIDPDWI 245
           G++D    +L+ + KK   PDVVTY+  +   C      E  +   L + K+  I PD  
Sbjct: 353 GRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVF 412

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +++ +     K      A      M +R    N V Y+ L+  Y + G   + L +WK  
Sbjct: 413 AFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDA 472

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRN 363
           +      N A YT +I+ L K+     A+ ++++  + SGT  P V   N L+A+    +
Sbjct: 473 VDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA-SGT-RPTVSEYNTLMASLCRES 530

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
            +E A + +  +      P   ++ ++  G LK G +E   E            VPD+  
Sbjct: 531 SVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKE--LLLEMLNMNLVPDNIT 588

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLII--VERMQ 480
            +   N+  + G +D A  L   + + GHV   + ++SLL+ Y+  GK   ++  +++M 
Sbjct: 589 FSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMA 648

Query: 481 KDNVQMDAE-TQKVLKITSEM 500
             +V +D++ T  +L     M
Sbjct: 649 DKDVVLDSKLTSTILACLCNM 669



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 154/354 (43%), Gaps = 10/354 (2%)

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           LS   +  ++ P+ +    +C+ L+ +  + K      ++  KM+      C    + ++
Sbjct: 42  LSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALI 101

Query: 183 NLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
             +++  +      +L   +K+    +V  +NL L       D   A   F  +K+  + 
Sbjct: 102 ESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLI 161

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           PD +SY+T+ +   K +   +A    KEM+   C+ N V +S+L+  +   G  +E   +
Sbjct: 162 PDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGL 221

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            ++M  +  + +   Y+ +IS     G+ E+ + +++E    + T +    + L+ A   
Sbjct: 222 LEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCK 281

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLECFKKAIGSVRKWV 418
           + + + A    + +    ++P    + +L  G  K G+     KVL+   K     R   
Sbjct: 282 KQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVK-----RGEE 336

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           P++    A  N L ++G +D A  +L T+   G     + Y++L++     GK+
Sbjct: 337 PNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKI 390



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 157/371 (42%), Gaps = 47/371 (12%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKM--SECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           PD  S   +++   + K+  EA+ L ++M   EC      + ++ +++ +  NG +++  
Sbjct: 162 PDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECK--PNSVTFSALIDGFCKNGDVEEGF 219

Query: 196 QMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+E++K     DV  Y+  ++   S+ D E  ++ F E+ +  + P+ ++YS L +  
Sbjct: 220 GLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNAL 279

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K +  ++AA  L  M     R + VAY+ L    +  G   + +++   M+    + N+
Sbjct: 280 CKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNN 339

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEW----------------ESISGTG----------- 347
             Y  +I+ L K G  + A  I +                  + + G G           
Sbjct: 340 VTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNL 399

Query: 348 ----------DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
                     D    N+++     + +L  A+  Y  +V +G      T+ +L  GYL  
Sbjct: 400 LMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSA 459

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-E 456
           G++ K LE +K A+ S     P+    T   N L +   +  A+ L    R +G   T  
Sbjct: 460 GKLTKALELWKDAVDS--GISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVS 517

Query: 457 IYNSLLRTYAK 467
            YN+L+ +  +
Sbjct: 518 EYNTLMASLCR 528



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 129/280 (46%), Gaps = 6/280 (2%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           +  N +++EL K +R +HA  V   M E  +   +V+  Y + +D       L+ A   +
Sbjct: 412 FAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVT--YNILIDGYLSAGKLTKALELW 469

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           ++  D    P+  T + L++   + +  + A+ L  K    G       YN ++      
Sbjct: 470 KDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRE 529

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
             +++   + QE++  N  PDVV++N+ +       D E+A++  LE+    + PD I++
Sbjct: 530 SSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITF 589

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L + ++K+   ++AA+  + M       + V + SLL  Y+  G  ++V+ + ++M  
Sbjct: 590 SILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMAD 649

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               ++    + +++ L  + +    E I  ++   +  G
Sbjct: 650 KDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQHTSVG 689


>gi|302801862|ref|XP_002982687.1| hypothetical protein SELMODRAFT_422000 [Selaginella moellendorffii]
 gi|300149786|gb|EFJ16440.1| hypothetical protein SELMODRAFT_422000 [Selaginella moellendorffii]
          Length = 541

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 189/456 (41%), Gaps = 56/456 (12%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           R     ++ W+ EG+ V +  + +++  L     Y   +++  W+ ++   +L   D+ V
Sbjct: 123 RDIVAALKDWQSEGNLVTRDVIYKLIIRLHARMFYFQGMKLMNWVIVEKPFQLTDFDHLV 182

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL-HSYVQNKKSAEAEALMEKMSECGF 171
            +D  ++   +      F  + DK    +TC  LL  ++    +   A  ++++M E   
Sbjct: 183 RMDFHTRELKVDKVLTCFNRIQDKT---ETCYVLLLQAFATAHRKERALDVLKQMKELVL 239

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTY-NLWLA--ACASQNDKE 226
           +  P  YN ++ +Y+  G +D+  +M  EL  K N +PD  TY NL  +  A    + ++
Sbjct: 240 ITNPYSYNLVIAMYLRMGLIDEAKEMFAELKDKSNVAPDAFTYLNLLKSRDALGMDDLED 299

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           T E+ FL++ K     +W                                       +L+
Sbjct: 300 TIEEFFLDVDKIPTGFEW--------------------------------------RNLI 321

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            LY  MG K +V R+W++   +   M ++ +   I S    GE ++ E I  + E+ +  
Sbjct: 322 RLYGAMGKKKDVERLWREQKRVAEYMPESYFLAAIESFGMNGEMKQFEEICKQLEAQNQK 381

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
              R    +L  Y     +  AE    ++     K  +  +  L  GY+ + Q  K  E 
Sbjct: 382 LSERQCFTMLKVYCMNGLMNDAERTAKKMEELRYKLGFKGYHYLVSGYVNRHQFVKATEK 441

Query: 407 FKKA--IGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEI--YN 459
           F +A   G  + +   + L       LE    + +++ AE ++  +    H   +I  +N
Sbjct: 442 FSEAEEKGLAKGF--KNPLFVTVLTLLEAYAGKKELEKAEEMVEKVLKTKHYPYDIRLFN 499

Query: 460 SLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           +LL+ Y +  K    I  R+++  ++ +  T K+LK
Sbjct: 500 ALLKVYRRCQKPAWGIENRIKEAKLEPNETTHKLLK 535


>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
 gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 175/373 (46%), Gaps = 23/373 (6%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           LN + RE     R + ALEV   M E   +  +V+  + + +D + K++   +A  F+ N
Sbjct: 121 LNLLFRE----NREESALEVFGRMVERGREPDVVT--FTIIIDGLCKMKKFDAAVQFWLN 174

Query: 133 LPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNG 189
           + DK   PD   C AL        +   A  L+  +   G  +   L YN +++ +   G
Sbjct: 175 MLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAG 234

Query: 190 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           ++DK   M+  + +    PD+VTYN+ L  C ++   E A K   +++ + I+PD  SY+
Sbjct: 235 RIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYN 294

Query: 249 TLTSLYIKMELPEKAATTL--KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
            L   + K   P+KA   +  K + K  C  + V+Y++++  + ++       +++++M 
Sbjct: 295 QLLKAHCKANHPDKAYLFMVTKMVPKGFC--DVVSYNTIIKAFCSISNNRRAYKLFEEMG 352

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 +   +T +I + ++ G  + A+ + D    +    D      ++  +    ++E
Sbjct: 353 RKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVE 412

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRL 423
           MA S +  +V KGI P   ++  L  G+ K  ++ +V+  +++ +   R   PD   ++L
Sbjct: 413 MAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQ--RGSFPDEVTYKL 470

Query: 424 ITAAY---NKLEE 433
           I  A    NKL +
Sbjct: 471 IIGALVRENKLSD 483



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y T  + Y+K  L + A     EM    CR   + Y+  + +       D     + KM 
Sbjct: 12  YRTRIASYVKAGLIDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMA 71

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
            L   ++   Y+  IS L +  EF   +N+  + E +    D    NI L      N+ E
Sbjct: 72  PLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFRENREE 131

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-------- 418
            A   + R+V +G +P   T+ ++  G  K           KK   +V+ W+        
Sbjct: 132 SALEVFGRMVERGREPDVVTFTIIIDGLCK----------MKKFDAAVQFWLNMLDKGIR 181

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG--HVSTEIYNSLLRTYAKAGKM--PLI 474
           PD++   A    L + G +D A  L++ + + G   VST +YN+L+  + +AG++   L 
Sbjct: 182 PDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKALA 241

Query: 475 IVERMQKDNVQMDAETQKVL 494
           +V  M +   + D  T  VL
Sbjct: 242 MVSFMSRTGCKPDLVTYNVL 261



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALM-EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           PD  S   LL ++ +     +A   M  KM   GF    + YN ++  + S     +  +
Sbjct: 288 PDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKGFCDV-VSYNTIIKAFCSISNNRRAYK 346

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           + +E+ +K  +PDVVT+ + + A   + + + A+K    +    + PD I Y+T+   + 
Sbjct: 347 LFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHC 406

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K    E A +   +M ++    + V+Y++L++ +       EV+ ++++M+   +  ++ 
Sbjct: 407 KSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEV 466

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            Y  +I +LV+  +   A  ++D+      T D  +  +L+ A
Sbjct: 467 TYKLIIGALVRENKLSDACRVWDQMMERGLTLDRGISEMLINA 509



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 107/245 (43%), Gaps = 5/245 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQ 196
           PD  T + LL+         EA  L++KM EC  ++  +  YN +L  +      DK   
Sbjct: 253 PDLVTYNVLLNYCCNEFMFEEAVKLLKKM-ECSAIEPDVYSYNQLLKAHCKANHPDKAYL 311

Query: 197 -MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            M+ ++      DVV+YN  + A  S ++   A K F E+ +  I PD ++++ L   ++
Sbjct: 312 FMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFL 371

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +    + A   L  M       +R+ Y++++  +   G  +    I+  M+      +  
Sbjct: 372 REGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVV 431

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I+   K     +  ++Y++        D     +++ A +  N+L  A   ++++
Sbjct: 432 SYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDACRVWDQM 491

Query: 376 VTKGI 380
           + +G+
Sbjct: 492 MERGL 496



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/283 (18%), Positives = 112/283 (39%), Gaps = 8/283 (2%)

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDV 209
           +++ +   A     KM+  GF      Y+  ++      +   +  +L++++K +  PD+
Sbjct: 55  IRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDI 114

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
             +N++L     +N +E+A + F  + +   +PD ++++ +     KM+  + A      
Sbjct: 115 WAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLN 174

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLG 328
           M  +  R +  A  +L     + G  D    +   ++S   ++++   Y  +IS   + G
Sbjct: 175 MLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAG 234

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
             +KA  +           D    N+LL    N    E A     ++    I+P   ++ 
Sbjct: 235 RIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYN 294

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            L   + K    +K        +  V K VP       +YN +
Sbjct: 295 QLLKAHCKANHPDKAY------LFMVTKMVPKGFCDVVSYNTI 331


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 141/316 (44%), Gaps = 5/316 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + K+    SA    + + +K   P+  T S LLHS+ +N    +A A++++M 
Sbjct: 351 YSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQML 410

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             GF      YN ++     +G+LD+  +++QE+K +   PD+ TYN  +    + +  E
Sbjct: 411 AKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLME 470

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE  F  L +  +  + I+Y+TL    ++    ++      EM    C+ + ++Y+ L+
Sbjct: 471 EAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLI 530

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D  + + ++M++   K N+  Y  +I+ L K G+   A  +  E  +   T
Sbjct: 531 KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 590

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+           A +   +L  + + P   T+ +L   + K   ++     
Sbjct: 591 PDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAML 650

Query: 407 FKKAIGSVRKWVPDHR 422
             KAI      VP+ R
Sbjct: 651 LDKAISG--GIVPNER 664



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 136/317 (42%), Gaps = 10/317 (3%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217
           EA  L+++M   G +   + Y  +L       Q D+   ML  L +    +VV  N  + 
Sbjct: 265 EAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE---VNVVMLNTVIR 321

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
            C ++     A + +  +      PD  +YS L     K+     A   L EME++ C  
Sbjct: 322 GCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAP 381

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YS+LL  +   G  D+   +  +M++    MN   Y  +I +L K G+ ++A  + 
Sbjct: 382 NIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLV 441

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S     D    N ++    N + +E AE  +  L+ +G+     T+  L    L+ 
Sbjct: 442 QEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRN 501

Query: 398 GQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           G+ ++ L    + +  G     +  + LI A    L ++G++D +  LL  +   G    
Sbjct: 502 GRWQEGLRLASEMLLHGCQLDVISYNGLIKA----LCKEGNVDRSMALLEEMVTKGIKPN 557

Query: 456 EI-YNSLLRTYAKAGKM 471
              YN L+    KAGK+
Sbjct: 558 NFSYNMLINELCKAGKV 574



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/280 (17%), Positives = 105/280 (37%), Gaps = 12/280 (4%)

Query: 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           LD++P+     +   SP   +YN+ L+  A  +    A   +  + + ++ P   ++   
Sbjct: 129 LDQMPR-----RFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 183

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
                ++     A   L+ M +  C  + V Y +++      G   E   +  +M+ +  
Sbjct: 184 ARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGC 243

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             +   +  ++  L  LG   +A  + D   +            LL       Q + A +
Sbjct: 244 AADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACA 303

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
              RL    +    T       G L +G++ +  E ++  +GS +   PD    +   + 
Sbjct: 304 MLGRLPEVNVVMLNTVIR----GCLTEGKLARATELYEM-MGS-KGCPPDVHTYSILMHG 357

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           L + G    A  +L  +   G     + Y++LL ++ + G
Sbjct: 358 LCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNG 397


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 146/307 (47%), Gaps = 3/307 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K R ++ A N F  +  +   PD  T ++L+H+     +      L+ +M 
Sbjct: 208 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 267

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
               L   + ++ +++     G++ +  +++  + ++   PDVVTY   +     Q++ +
Sbjct: 268 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 327

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F  + +    PD ISY+TL + Y K+   +KA    +EM ++    +   Y++L+
Sbjct: 328 EAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLM 387

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
               ++G   + + ++ +M++     +   Y+ ++ SL K    E+A  +    E+ +  
Sbjct: 388 YGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLN 447

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D +V NI++       +LE A   ++ L +KG+ P   T+ ++  G  K+G + +  + 
Sbjct: 448 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 507

Query: 407 FKKAIGS 413
           F +  G+
Sbjct: 508 FMEMDGN 514



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 146/367 (39%), Gaps = 39/367 (10%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P T + L+       K  EA  L +KM + GF    + Y  ++N     G      ++L+
Sbjct: 135 PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 194

Query: 200 ELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-------- 250
            +++ N  PDVV Y   + +         A   F ++    I PD  +Y++L        
Sbjct: 195 SMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLC 254

Query: 251 -----TSLYIKME----LPE------------------KAATTLKEMEKRTCRKNRVAYS 283
                T+L  +M     LP+                  +A   +  M +R    + V Y+
Sbjct: 255 EWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 314

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+  +      DE ++++  M+      +   YT +I+   K+ + +KA  +++E    
Sbjct: 315 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 374

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D +  N L+    +  +L+ A + ++ +V +G  P   T+ +L     K   +E+ 
Sbjct: 375 EWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEA 434

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
           +   K    S     PD ++     + +   G+++ A  L   L + G H S   YN ++
Sbjct: 435 MALLKAIEASNLN--PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 492

Query: 463 RTYAKAG 469
               K G
Sbjct: 493 HGLCKRG 499



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 136/331 (41%), Gaps = 6/331 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           + LL S  + K  +   +L  +M   G        N ++N +    ++     +L + LK
Sbjct: 69  AKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILK 128

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               PD  T+   +     +     A   F ++      P+ ++Y TL +   K+     
Sbjct: 129 LGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSA 188

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+ ME+  C+ + V Y+S++          E   ++ +M+      +   YT ++ 
Sbjct: 189 AIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVH 248

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L  L E++    + ++  +     D  + + ++ A     ++  A    + ++ +G++P
Sbjct: 249 ALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEP 308

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAE 441
              T+  L  G+  + +M++ ++ F      VRK + PD    T   N   +   ID A 
Sbjct: 309 DVVTYTTLMDGHCLQSEMDEAVKVFDMM---VRKGFAPDVISYTTLINGYCKIHKIDKAM 365

Query: 442 HLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           +L   + R      T+ YN+L+      G++
Sbjct: 366 YLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 3/274 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           ++  +D + K   ++ A    + +  +   PD  T + L+  +    +  EA  + + M 
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             GF    + Y  ++N Y    ++DK   + +E+ +K   PD  TYN  +         +
Sbjct: 338 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQ 397

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+      PD ++YS L     K    E+A   LK +E      +   Y+ ++
Sbjct: 398 DAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIII 457

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  +    ++  + S     +   Y  +I  L K G   +A  ++ E +    +
Sbjct: 458 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 517

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            D    N +   ++  N+   A      ++ +G 
Sbjct: 518 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551



 Score = 38.5 bits (88), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 50/280 (17%), Positives = 111/280 (39%), Gaps = 10/280 (3%)

Query: 172 LKCPLPYN-------HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224
           L  PLP+        H  +L+  N   D +    + L  +  P +V +   L + A    
Sbjct: 22  LSPPLPFFSSSQNNFHSKSLHF-NTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKH 80

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
             T      ++    + P+  + + L + +  +     A + L ++ K   + +   +++
Sbjct: 81  YSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTT 140

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+      G   E L ++ KM+    + N   Y  +I+ L K+G    A  +    E  +
Sbjct: 141 LIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN 200

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D  +   ++ +     Q+  A + ++++V +GI P   T+  L        + + V 
Sbjct: 201 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 260

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
               + + S  K +PD  + +   + L ++G +  A  ++
Sbjct: 261 TLLNQMVNS--KILPDVVIFSTVVDALCKEGKVTEAHEIV 298


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 146/330 (44%), Gaps = 4/330 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + L+  + + K+S E ++++++M   G     + Y  ++N ++    +    Q+ +E+  
Sbjct: 306 ATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFA 365

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +    +  TY   +       D E AE  F E+    I PD  +Y+ L   Y K++  EK
Sbjct: 366 RKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEK 425

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L E++K     N     ++++   + G       ++++M+S   K N   YT ++ 
Sbjct: 426 AYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVK 485

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            LVK G FE+A  I    +    + D    N ++  +    ++E  +S+   ++ KG+KP
Sbjct: 486 GLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKP 545

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+     GY + G+M+     F + + S     P+  + T   +   + G+   A  
Sbjct: 546 NVYTYGAFIHGYCRAGEMQAAERSFIEMLDS--GIAPNDVICTDLIDGYCKDGNTTKAFA 603

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
               + + G +   + ++ L+   +K GK+
Sbjct: 604 KFRCMLDQGVLPDVQTHSVLIHGLSKNGKL 633



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 146/313 (46%), Gaps = 18/313 (5%)

Query: 170 GFLKCPLP----YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQND 224
           G L   +P    Y +++N Y   G++++   +L +++ K   P++VTY++ +A      D
Sbjct: 223 GMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGD 282

Query: 225 KETAEKAFLELKKTKID----PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
            + A    LELK++  +    PD   Y+TL   + + +   +  + L EM     + + V
Sbjct: 283 VDEA----LELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHV 338

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           AY++L++ +          ++ ++M +   K+N   Y  +I  L K+G+ EKAE+++ E 
Sbjct: 339 AYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             +    D +  N L+  Y     +E A      +  + +         +  G    G +
Sbjct: 399 TMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDL 458

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--Y 458
            +  E F++ I    K  P+  + T     L ++G  + A  +L  +++ G +S ++  Y
Sbjct: 459 TRANELFQEMISWGLK--PNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQG-LSPDVFCY 515

Query: 459 NSLLRTYAKAGKM 471
           N+++  + KAGKM
Sbjct: 516 NTVIIGFCKAGKM 528



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 152/356 (42%), Gaps = 9/356 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++   V+  +  EA  ++  M + G       YN ++  +   G++++    L E+  
Sbjct: 481 TTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIA 540

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           K   P+V TY  ++       + + AE++F+E+  + I P+ +  + L   Y K     K
Sbjct: 541 KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTK 600

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  +    +   +S L+   +  G   E + ++ +++      +   YT +IS
Sbjct: 601 AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLIS 660

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L K G+ + A  ++D+        +    N L+       ++  A   ++ +  KG+  
Sbjct: 661 NLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLAR 720

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
              T+  +  GY K   + +  + F   K +G      PD  +  A  +   + G+ + A
Sbjct: 721 NSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGV----PPDSFVYCALIDGCCKAGNTEKA 776

Query: 441 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             L + +   G  ST  +N+L+  + K GK+     +VE M  +++  +  T  +L
Sbjct: 777 LSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTIL 832



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 8/290 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +AE  F  + D    P+   C+ L+  Y ++  + +A A    M + G L     ++ 
Sbjct: 563 MQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSV 622

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++    NG+L +   +  EL  K   PDV TY   ++    + D + A +   ++ K  
Sbjct: 623 LIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKG 682

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I+P+ ++Y+ L +   K+    KA      + ++   +N V YS++++ Y       E  
Sbjct: 683 INPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAF 742

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--ESISGTGDPRVPNILLA 357
           +++  M  +    +   Y  +I    K G  EKA +++     E I+ T  P   N L+ 
Sbjct: 743 QLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAST--PAF-NALID 799

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
            +    +L  A      +V   I P + T+ +L   +   G +++  + F
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLF 849



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 150/389 (38%), Gaps = 38/389 (9%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSY--VQNKKSA- 157
           IKL +  Y   +  + KI  L  AE+ F  +      PD  T + L+  Y  VQN + A 
Sbjct: 368 IKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAY 427

Query: 158 ------EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVV 210
                 + E L      CG          ++N     G L +  ++ QE+      P++V
Sbjct: 428 ELLIEIKKENLTANAYMCG---------AIVNGLCHCGDLTRANELFQEMISWGLKPNIV 478

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
            Y   +     +   E A K    +K   + PD   Y+T+   + K    E+  + L EM
Sbjct: 479 IYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEM 538

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
             +  + N   Y + +  Y   G      R + +M+      ND   T +I    K G  
Sbjct: 539 IAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNT 598

Query: 331 EKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
            KA   + ++  +   G   D +  ++L+       +L+ A   ++ L+ KG+ P   T+
Sbjct: 599 TKA---FAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTY 655

Query: 388 ELLTWGYLKKGQMEKVLECF----KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             L     K+G ++   E      KK I       P+     A  N L + G+I  A  L
Sbjct: 656 TSLISNLCKEGDLKAAFELHDDMCKKGIN------PNIVTYNALINGLCKLGEIAKAREL 709

Query: 444 LVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              +   G     + Y++++  Y K+  +
Sbjct: 710 FDGIPEKGLARNSVTYSTIIAGYCKSANL 738



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 136/345 (39%), Gaps = 40/345 (11%)

Query: 109 DYAVHLDLISKI---RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
           D   +  LIS +     L +A    +++  K   P+  T +AL++   +  + A+A  L 
Sbjct: 651 DVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELF 710

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQ 222
           + + E G  +  + Y+ ++  Y  +  L +  Q+   +K     PD   Y   +  C   
Sbjct: 711 DGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKA 770

Query: 223 NDKETAEKAFL----------------------------------ELKKTKIDPDWISYS 248
            + E A   FL                                  ++    I P+ ++Y+
Sbjct: 771 GNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYT 830

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L   +  +   ++A     EM+KR    N + Y+SLL  Y  +G + E+  ++ +M++ 
Sbjct: 831 ILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVAR 890

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             K +D  ++ ++ + +K G + KA  + D+  S        +  IL+ A    N L   
Sbjct: 891 GIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEV 950

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
               + +  +G K    T   L   + + G+ ++ L   +  + S
Sbjct: 951 LKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVRS 995


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 149/322 (46%), Gaps = 25/322 (7%)

Query: 109 DYAVHLDLISKIRGLSSAENF---FENLPDKMRG---PD--TCSALLHSYVQNKKSAEAE 160
           D A++  LIS   G S A++F   F+ L + ++    P   T + ++    + +++ +A 
Sbjct: 76  DDAIYNALIS---GYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAV 132

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC 219
            L+++M + G       YN ++       +LD+  +ML+E+  +   PDVVTYN ++   
Sbjct: 133 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A K    L +  + PD +SY+T+ +   K    + A+  L  M  R C  + 
Sbjct: 193 CKCDRVDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDV 249

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V YSSL+  +   G  +  + +   M+ L  + N   Y  ++ +L +LG   KAE++  E
Sbjct: 250 VTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE 309

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW------- 392
            E    T D    N  +       +++ A++ ++R+V +G  P  +++ +L         
Sbjct: 310 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTV 369

Query: 393 ---GYLKKGQMEKVLECFKKAI 411
              G  K G+ ++    F K +
Sbjct: 370 LLDGLCKGGRFDEACALFSKVL 391



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 174/432 (40%), Gaps = 62/432 (14%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVREL---RKLKRYKHALEVCEWMELQYDIKLVSGD 109
           R A   + + +++G + + Y  N IV  L   RKL   K  LE  E     Y   +V+  
Sbjct: 129 RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLE--EMAVRGYFPDVVT-- 184

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +  + K   +  A  F   +P     PD  S   +++   ++     A  +++ MS
Sbjct: 185 YNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
             G     + Y+ +++ +   G++++   +L   LK    P++V YN  L A        
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE   +E+++    PD +SY+       K E  +KA      M +R C  N  +YS L+
Sbjct: 302 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361

Query: 287 S---LYTNM-------GYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLVKLGEFEKA 333
               LYT +       G  DE   ++ K++    K+ + +   Y  ++ S  K  + +KA
Sbjct: 362 VDILLYTVLLDGLCKGGRFDEACALFSKVLD--EKICEPDVFFYNVMLDSHCKRRQIDKA 419

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             I+ +        +    NIL+      ++L  AE+    +V +G  P + T+  L   
Sbjct: 420 LQIHKQMLE-KNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 478

Query: 394 YLKKGQMEKVLECFKKAI--GSV-------------------------------RKWVPD 420
             K G+    LE F++A+  G V                               R+WVPD
Sbjct: 479 MCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPD 538

Query: 421 HRLITAAYNKLE 432
            + +   + KL+
Sbjct: 539 DKTLGLLHRKLK 550



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 106/265 (40%), Gaps = 6/265 (2%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +V TYN  L     ++  + A   F E+      PD  +++ L     +    EKA   L
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
             M++  C  +   Y++L+S Y+      +  +   +M+          YT ++  L K 
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
                A  + DE      + +    N+++       +L+ A+     +  +G  P   T+
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 185

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
                G  K  ++++     +K +  +    PD    T   N L + GD+D A  +L  +
Sbjct: 186 NSFIKGLCKCDRVDEA----RKFLARM-PVTPDVVSYTTVINGLCKSGDLDSASRMLDHM 240

Query: 448 RNAGHVSTEI-YNSLLRTYAKAGKM 471
            N G     + Y+SL+  + K G++
Sbjct: 241 SNRGCTPDVVTYSSLIDGFCKGGEV 265



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/335 (20%), Positives = 125/335 (37%), Gaps = 21/335 (6%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
           LL    +  +  +A A+ ++M +         +  +L     + QL+K  ++L  +K+  
Sbjct: 13  LLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMG 72

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD   YN  ++  +   D   A K   E+ K    P  ++Y+ +     K E    A 
Sbjct: 73  CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAV 132

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             L EM  + C  N   Y+ ++         DE  ++ ++M       +   Y   I  L
Sbjct: 133 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKG 379
            K    ++A               P  P++     ++        L+ A    + +  +G
Sbjct: 193 CKCDRVDEARKFLARM--------PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG 244

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKA--IGSVRKWVPDHRLITAAYNKLEEQGDI 437
             P   T+  L  G+ K G++E+ +        +G     V  + L+ A    L   G I
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA----LHRLGHI 300

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             AE +LV +   G     + YN+ +    KA ++
Sbjct: 301 GKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 19/184 (10%)

Query: 92  EVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA--- 145
           E C       D K+   D   Y V LD   K R +  A    + + +K    + C+    
Sbjct: 382 EACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEK----NCCNVVTW 437

Query: 146 --LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
             L+H    + + ++AE ++  M + GF+   + Y  +++     G+     ++ +E +K
Sbjct: 438 NILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVK 497

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL--- 259
               PDVVTY+  +     +N  E A   F +L + +  PD     TL  L+ K++L   
Sbjct: 498 GGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDD---KTLGLLHRKLKLLNK 554

Query: 260 PEKA 263
           P KA
Sbjct: 555 PRKA 558


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 161/376 (42%), Gaps = 11/376 (2%)

Query: 119 KIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           ++R    A     +L D+ R P     +C+ LL + +   + A+       ++  G    
Sbjct: 104 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPD 163

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAF 232
              +N  +   ++ G L +   ML+ + ++ +P  +  +YN+ +A          A + F
Sbjct: 164 TFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVF 223

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            E+ +  + P+ I+Y+T+   +IK    E       +M     + N + Y+ LLS     
Sbjct: 224 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRA 283

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E   +  +M S     +   Y+ +   L + G+ +   +++ ++     T      
Sbjct: 284 GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTC 343

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           +ILL       ++ +AE     LV  G+ P    +  L  GY + G++E     F +   
Sbjct: 344 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM-- 401

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             R   PDH    A  N L +   I  A+ LL+ +++ G + + E +N+L+  Y + G++
Sbjct: 402 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 461

Query: 472 P--LIIVERMQKDNVQ 485
               I++  MQ++ ++
Sbjct: 462 EKCFIVLSEMQENGLK 477



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 51/355 (14%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  TCS LL+   ++ K + AE +++ +   G +   + YN ++N Y   G+L       
Sbjct: 339 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL------- 391

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                                      E A   F ++K   I PD I+Y+ L +   K E
Sbjct: 392 ---------------------------EGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 424

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   L EM+          +++L+  Y   G  ++   +  +M     K N   Y 
Sbjct: 425 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 484

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++++  K G+  +A  I D+        + +V N ++ AY+     + A     ++ + 
Sbjct: 485 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 544

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA--YNKLEE--- 433
           GI P   T+ LL  G   + Q+ +  E            + +HRLI  A  YN L     
Sbjct: 545 GISPSIVTYNLLIKGLCNQSQISEAEEIINS--------LSNHRLIPDAVSYNTLISACC 596

Query: 434 -QGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI--IVERMQKDNV 484
            +G+ID A  L   +   G  ST   Y+ L+     AG++  +  + ++M ++NV
Sbjct: 597 YRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 651



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 1/197 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            ++++++ +N K  EA A+++ M     L     YN +++ Y+ +G  D+   +++++K 
Sbjct: 484 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 543

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N  SP +VTYNL +    +Q+    AE+    L   ++ PD +SY+TL S        +K
Sbjct: 544 NGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK 603

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M K   +     Y  L+S     G  +E+  +++KMM      ++A +  ++ 
Sbjct: 604 ALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVE 663

Query: 323 SLVKLGEFEKAENIYDE 339
           +  K G   KAE++  E
Sbjct: 664 AYSKYGNEIKAEDLRKE 680



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 106/253 (41%), Gaps = 3/253 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   +++A++    + D    P  +T + L+ +Y +  +  +   ++ +M 
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 472

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G     + Y  ++N +  NG++ +   +L ++  K+  P+   YN  + A       +
Sbjct: 473 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++K   I P  ++Y+ L           +A   +  +       + V+Y++L+
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S     G  D+ L + ++M     K     Y  +IS L   G   + E +Y +    +  
Sbjct: 593 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 652

Query: 347 GDPRVPNILLAAY 359
               + NI++ AY
Sbjct: 653 PSNAIHNIMVEAY 665


>gi|297843920|ref|XP_002889841.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335683|gb|EFH66100.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 665

 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 157/354 (44%), Gaps = 11/354 (3%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +LN I+R+     R++  +++ +WM+    I + +  Y+  +  +   + +S A   +++
Sbjct: 101 DLNVILRDFGISGRWQDLIQLFDWMQQHGKISVST--YSSCIKFVGA-KNVSKALEIYQS 157

Query: 133 LPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN--LYISN 188
           +PD+    +   C+++L   V+N K      L ++M   G     + YN +L   + + N
Sbjct: 158 IPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRGGLKPDVITYNTLLAGCIKVKN 217

Query: 189 GQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G   K  +++ EL  N    D V Y   LA CAS    E AE    ++K     P+   Y
Sbjct: 218 G-YPKAVELIGELPHNGIQMDSVMYGTVLAICASNGRCEEAENFIQQMKAEGHSPNIYHY 276

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S+L + Y      +KA   + EM+      N+V  ++LL +Y   G  D    +  ++ S
Sbjct: 277 SSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELES 336

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N+  Y  ++  L K G+ E+A +I+D+ +      D    +I+++A     + E 
Sbjct: 337 AGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVKSDGYANSIMISALCRSKRFEE 396

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           A+       T   K        +   Y + G+ME V+   KK     +  +PD+
Sbjct: 397 AKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKM--DEQAIIPDY 448


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 189/444 (42%), Gaps = 26/444 (5%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           +  N I+  L + + +  AL V   M L+ ++      Y + +  + K      A   F+
Sbjct: 164 FAFNLILHFLVRKEAFLLALAVYNQM-LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFD 222

Query: 132 NLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            + D+   P+    S +L    Q KK  +A+ L  KM   G  +  + YN +LN +  +G
Sbjct: 223 EMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSG 282

Query: 190 QLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
            LD    +LQ L K+     V+ Y   +         E A   + ++ +  I PD + Y+
Sbjct: 283 YLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYT 342

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV--LRIWKKMM 306
            +     +     +A T L EM +R  R + + Y++L+  + +MGY DE   LR+     
Sbjct: 343 IMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F   N+  Y+ +I  + K G   KA++I+ E E +         N L+      N+LE
Sbjct: 403 DCFP--NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 367 MAESFYNRL-----------VTKGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            A   + ++           +++G    +   + +++     + G + K  +   + + S
Sbjct: 461 EARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDS 520

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM- 471
               +PD R      N   + G+I+GA  L   ++  GH+   + Y +L+    +AG+  
Sbjct: 521 --GVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 472 -PLIIVERMQKDNVQMDAETQKVL 494
             L I E+M K     ++ T K +
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTI 602



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 155/387 (40%), Gaps = 20/387 (5%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ----YDIKLVSGDYAVH 113
           +++ W     TV    + ++++E        +A E+  W  LQ      IK+ S  ++V 
Sbjct: 84  SLKSWHLRCRTVQDLIIGKLIKE--------NAFEL-YWKVLQELKNSAIKISSEAFSVL 134

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++  S+      A   F  + D    PD    + +LH  V+ +    A A+  +M +C  
Sbjct: 135 IEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNL 194

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y  +++      +      +  E+  +   P+ + Y++ L+          A++
Sbjct: 195 NPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQR 254

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F +++ +  + D I+Y+ L + + K    + A T L+ + K       + Y  L++   
Sbjct: 255 LFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLF 314

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                +E    ++KM+    K +   YT +I  L + G   +A  +  E        D  
Sbjct: 315 RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTI 374

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N L+  + +   L+ AES    +      P   T+ +L  G  K G + K    FK+ 
Sbjct: 375 CYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEM 434

Query: 411 --IGSVRKWVPDHRLITAAY--NKLEE 433
             +G +   V  + LI      N+LEE
Sbjct: 435 EKLGCLPSVVTFNSLINGLCKANRLEE 461



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 50/128 (39%)

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++Q +     PD+ TYN+ +       +   A K F E++     PD ++Y TL     +
Sbjct: 514 LMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYR 573

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E A    ++M K+ C      Y ++++           L +W K +  F    D +
Sbjct: 574 AGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEK 633

Query: 317 YTCVISSL 324
              V  S 
Sbjct: 634 VRVVAESF 641


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 6/300 (2%)

Query: 116 LISKIRGLSSAENFFENLPDKMRG---PD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           LI  + G    +N    L D +R    PD  T + LL +  +     +A  L+++M + G
Sbjct: 158 LIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG 217

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
                + YN ++N     G++D   + L+ L      P+ V+YN+ L    +    E AE
Sbjct: 218 CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 277

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           K   E+ +    P+ ++++ L S   +  L E A   L ++ K  C  N ++Y+ +L  +
Sbjct: 278 KLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                 D  +   + M+S     +   Y  ++++L + GE + A  +  + +    T   
Sbjct: 338 CKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL 397

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N ++       + E A    N +VTKG++P   T+  ++ G  ++G++E+ ++ F K
Sbjct: 398 ISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCK 457



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 16/335 (4%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQ 196
           GP  C+AL+     + ++AEA  ++           P  + YN M+  Y   GQLD   +
Sbjct: 91  GP--CAALIKKLCASGRTAEARRVLASCE-------PDVMSYNAMVAGYCVTGQLDNARR 141

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++  +     PD  TYN  +     +   + A     ++ +    PD ++Y+ L     K
Sbjct: 142 LVAAMP--MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCK 199

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A   L EM  + C  + V Y+ +++     G  D+ +   K + S   + N   
Sbjct: 200 RSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVS 259

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  V+  L     +E AE +  E        +    N+L++    R  +E A    +++ 
Sbjct: 260 YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIP 319

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
             G  P   ++  +   + K+ +M++ +   +  + S     PD          L   G+
Sbjct: 320 KYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSS--GCYPDIVSYNTLLTALCRGGE 377

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           +D A  LL  L++ G     I YN+++    KAGK
Sbjct: 378 VDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGK 412



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 139/300 (46%), Gaps = 5/300 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ I +   +  A  F ++LP     P+T S   +L      ++  +AE LM +MS
Sbjct: 225 YNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 284

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     + +N +++     G ++   ++L ++ K   +P+ ++YN  L A   Q   +
Sbjct: 285 RKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMD 344

Query: 227 TAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
            A  AF+EL   +   PD +SY+TL +   +    + A   L +++ + C    ++Y+++
Sbjct: 345 RA-MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +   T  G  +E L +  +M++   + +   Y+ + S L + G  E+A   + + + +  
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +  + N +L     R     A   +  +V+ G  P  +T+ +L  G   +G +++  E
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEARE 523


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 138 RG-PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQL 191
           RG PD  S   LL+      +S EA  L+  M++ G   CP   + Y+ ++N +   G L
Sbjct: 46  RGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGG-DCPPDVVSYSTVINGFFKEGDL 104

Query: 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           DK+      L +  SP+VVTYN  +AA       + A +    + K+ + PD ++Y+++ 
Sbjct: 105 DKM------LDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +     P++A   LK+M       + V Y+SL+      G   E  +I+  M     K
Sbjct: 159 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 218

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  ++      G   +   + D         +  V +IL+ AY  + ++E A   
Sbjct: 219 PDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLV 278

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++++  +G+ P   T+  +     K G++E  +  F++ I    +  PD  +  +  + L
Sbjct: 279 FSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR--PDSIVYNSLIHSL 336

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
                 + AE L + + + G  +ST  +NS++ ++ K G++
Sbjct: 337 CIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRV 377



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 115/262 (43%), Gaps = 10/262 (3%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD M    T ++++H +  + +  EA   ++KM   G     + YN +++    NG+  
Sbjct: 148 MPDCM----TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + K+   PD+ TY   L   A++            + +  I P+   +S L 
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 263

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K E  E+A     +M ++    N V Y +++ +    G  ++ +  +++M+    +
Sbjct: 264 CAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR 323

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  +I SL    ++EKAE ++ E             N ++ ++    ++  +   
Sbjct: 324 PDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKL 383

Query: 372 YNRLVTKGIKPCYTTWELLTWG 393
           ++ +V  G+KP     +++T G
Sbjct: 384 FDLMVRIGVKP-----DIITLG 400



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 30/244 (12%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETA--------------------------- 228
            +  EL +   PDV +YN+ L     +N  + A                           
Sbjct: 38  HVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 229 ---EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
              E    ++   +I P+ ++Y+++ +   K +  +KA   L  M K     + + Y+S+
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + + G   E +   KKM S   + +   Y  ++  L K G   +A  I+D       
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D      LL  Y  +  L       + +V  GI P +  + +L   Y K+ ++E+ + 
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 406 CFKK 409
            F K
Sbjct: 278 VFSK 281


>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +Y ++ +  EAE L  +M   G +     YN +++ Y    Q + +  +L E++ 
Sbjct: 352 NTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQD 411

Query: 204 -NTSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               P+V +Y   ++A   Q    + A  AFL +KK  I P   SY+ L   Y      E
Sbjct: 412 MGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHE 471

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA T  + M++   + +   Y++LL  +   G    +++IWK M+S   +     +  ++
Sbjct: 472 KAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILL 531

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G + +A ++  E+  I         N+L+ AY    Q          + +  +K
Sbjct: 532 DGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLK 591

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   T+  + + Y++    ++     K+ + S +  VPD +    +Y KL    D+  A
Sbjct: 592 PDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQ--VPDPQ----SYQKLRSILDVKAA 644



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 133 LPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           L DK+ G   T + LL  + +     EA  ++ +  + GF    + YN ++N Y   GQ 
Sbjct: 516 LSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQH 575

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            ++PQ+L+E+   N  PD +TY+  + A     D + A     ++ K+   PD  SY  L
Sbjct: 576 SRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKL 635

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            S+     L  KAAT           KNR   S++L +
Sbjct: 636 RSI-----LDVKAAT-----------KNRKDRSAILGI 657



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 120/286 (41%), Gaps = 8/286 (2%)

Query: 189 GQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G  D +  +L+ L K     DV  YN  ++  +S    + A K + E++   I PD ++ 
Sbjct: 221 GMGDDLMVLLRNLPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTC 280

Query: 248 STLTSLYIKMELPEKAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           S + ++  K     K A    + M ++  + +     +L+  + + G K+E L I  +M 
Sbjct: 281 SIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEME 340

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   Y  ++ +  K    E+AE ++ E ++          NIL+ AY  R Q E
Sbjct: 341 KKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPE 400

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLI 424
           + E+    +   G++P   ++  L   Y   G+ +K+ +    A   ++K    P     
Sbjct: 401 IIENLLLEMQDMGLEPNVKSYTCLISAY---GRQKKMSDMAADAFLRMKKVGIKPTSHSY 457

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           TA  +     G  + A      ++  G   S E Y +LL  + +AG
Sbjct: 458 TALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAG 503



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 120/296 (40%), Gaps = 17/296 (5%)

Query: 118 SKIRGLSSAENF------FENLPDKMRGPD--TCSALLHSYVQNKKSA-EAEALMEKMSE 168
           S I GLSS   +      ++ +      PD  TCS ++    ++  SA +A    ++M+ 
Sbjct: 247 SAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNR 306

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKET 227
            G          ++  +   G  ++   +  E+ KK  S + + YN  + A +  N  E 
Sbjct: 307 KGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEE 366

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE  F E+K   + P   +Y+ L   Y +   PE     L EM+      N  +Y+ L+S
Sbjct: 367 AEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLIS 426

Query: 288 LYTNM-GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            Y       D     + +M  +  K     YT +I +    G  EKA   Y  +E++   
Sbjct: 427 AYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKA---YTAFENMKRE 483

Query: 347 G-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           G  P +     LL A+      +     +  +++  I+    T+ +L  G+ K+G 
Sbjct: 484 GIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGH 539


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 153/356 (42%), Gaps = 35/356 (9%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           +AA  ++K +E G   +    + I+   RK +R   AL++  +M                
Sbjct: 221 AAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM---------------- 264

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
                K++G+S         PD      T ++L+       +  EA AL+ +M     + 
Sbjct: 265 -----KVKGIS---------PDIF----TYNSLIQGLCNFSQWKEASALLNEMRSLNIMP 306

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAF 232
             + +N +++     G++ +   +L+ + +    PDVVTY+  +   + +++   A K F
Sbjct: 307 DIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLF 366

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +      PD  SY+ L + Y K++  ++A     EM  +    N V+Y++L+     +
Sbjct: 367 DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQL 426

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E   ++K M +     N   Y+ ++    K G F KA  ++   +S     +  + 
Sbjct: 427 GSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMY 486

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           NIL+ A      L  A   ++ L  KG++P    +  +  G  K+G +++ LE F+
Sbjct: 487 NILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFR 542



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 156/361 (43%), Gaps = 8/361 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + KI   ++A    + + +    P+  T S ++ S+ ++++  EA  +   M 
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMK 265

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G       YN ++    +  Q  +   +L E++  N  PD+VT+N+ +     +    
Sbjct: 266 VKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVS 325

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLY-IKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
            A+     + +  ++PD ++YS+L   Y ++ E+ E A      M  + C+ +  +Y+ L
Sbjct: 326 EAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVE-ARKLFDAMITKGCKPDVFSYNIL 384

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++ Y  +   DE  +++ +M+      N+  Y  +I  L +LG   +A N++    +   
Sbjct: 385 INGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGN 444

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +    +ILL  +  +     A   +  + +   KP    + +L     K G +    +
Sbjct: 445 LPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARK 504

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
            F +    V+   P+ ++ T   N L ++G +D A      +   G    EI YN ++R 
Sbjct: 505 LFSELF--VKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRG 562

Query: 465 Y 465
           +
Sbjct: 563 F 563



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/330 (17%), Positives = 140/330 (42%), Gaps = 4/330 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L++ +   ++   A +++ K+ + G     + +  ++N     G+  +  ++  ++
Sbjct: 135 TLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM 194

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +   PDV TY   +       +   A     ++++    P+ ++YST+   + K    
Sbjct: 195 VARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRV 254

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A      M+ +    +   Y+SL+    N     E   +  +M SL    +   +  +
Sbjct: 255 NEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVL 314

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           + ++ K G+  +A+ +      +    D    + L+  Y  R+++  A   ++ ++TKG 
Sbjct: 315 VDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGC 374

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           KP   ++ +L  GY K  ++++  + F + I   +   P++       + L + G +  A
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIH--QGLTPNNVSYNTLIHGLCQLGSLREA 432

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            +L   +   G++     Y+ LL  + K G
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQG 462



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/381 (19%), Positives = 152/381 (39%), Gaps = 54/381 (14%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           N  DK +  D CS         +   +A A    M     L C + +  +L+  +  GQ 
Sbjct: 62  NRRDKRKHDDACSF--------RNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQY 113

Query: 192 -DKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            D V  + ++++    SP++ T ++ +   +     + A     ++ K  + P  ++++T
Sbjct: 114 YDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTT 173

Query: 250 LTSLYIK-------MEL----------PE------------------KAATTLKEMEKRT 274
           L +   K       MEL          P+                   AA  LK+ME+  
Sbjct: 174 LINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG 233

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           C+ N V YS+++  +      +E L I+  M       +   Y  +I  L    ++++A 
Sbjct: 234 CQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS 293

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            + +E  S++   D    N+L+       ++  A+     +   G++P   T+  L +GY
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGY 353

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
             + ++ +  + F   I   +   PD   + ++   Y K++    ID A+ L   + + G
Sbjct: 354 SLRSEVVEARKLFDAMI--TKGCKPDVFSYNILINGYCKVKR---IDEAKQLFNEMIHQG 408

Query: 452 HVSTEI-YNSLLRTYAKAGKM 471
                + YN+L+    + G +
Sbjct: 409 LTPNNVSYNTLIHGLCQLGSL 429


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 54/443 (12%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLD-----LISKIRGLSS----AENFFENLPDKM 137
           ++ AL + EW  L +       D  + LD     L+ +I G  S    A   F+ +P + 
Sbjct: 157 WERALLLFEWGWLHF-----GSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEK 211

Query: 138 RGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKV 194
              D    + +LH+Y ++ K   A  L +KM   G     + YN ML++Y   G+   ++
Sbjct: 212 YSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRI 271

Query: 195 PQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++L E++ K    D  T +  ++AC  +   + A K   ELK     P  + Y+++  +
Sbjct: 272 LELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQV 331

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + K  +  +A + LKEME   C  + + Y+ L + Y   G+ DE + +   M S     N
Sbjct: 332 FGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPN 391

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              YT VI +  K G  + A  ++ + + +    +    N +LA    +++ E       
Sbjct: 392 AITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLC 451

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVL------------ECFKKAIGSVRK-- 416
            +   G  P   TW  +     ++G+   + KVL            + F   I S  +  
Sbjct: 452 EMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCG 511

Query: 417 ----------------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
                           + P      A  N L  +GD   AE ++  ++  G    E  Y+
Sbjct: 512 SEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYS 571

Query: 460 SLLRTYAKAGKMPLIIVERMQKD 482
            LL  Y+KAG +  I  E+++K+
Sbjct: 572 LLLHCYSKAGNVRGI--EKVEKE 592



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K R L   E  F+ L      PD    +++L  + +NK  ++A  ++  + ECG      
Sbjct: 614 KCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLF 673

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++LY+   +  K  ++L+ ++ +   PDVV+YN  +     +   + A +   E+
Sbjct: 674 TYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEM 733

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               I P  ++Y+T  S Y  MEL ++A   ++ M +  CR + + Y  L+  Y   G  
Sbjct: 734 TTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKH 793

Query: 296 DEVLRIWKKMMSLFAKMND 314
           +E +    K+  +    +D
Sbjct: 794 EEAMDFVTKIKEIDISFDD 812



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PDK    DT + L+ SY +     ++  +  +M + GF  C   YN +LN     G    
Sbjct: 495 PDK----DTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKA 550

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++Q+++ K   P+  +Y+L L   +   +    EK   E+   ++ P WI   TL  
Sbjct: 551 AESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVL 610

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K            +++K   + + V  +S+LS+++    ++++    ++M+    + 
Sbjct: 611 SNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFS----RNKMFSKAREMLHFIHEC 666

Query: 313 ----NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   Y C++   V+  E  KAE +    ++     D    N ++  +  +  ++ A
Sbjct: 667 GLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEA 726

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGY 394
               + + TKGI+P   T+     GY
Sbjct: 727 IRVLSEMTTKGIQPTIVTYNTFLSGY 752



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N ML+++  N    K  +ML  + +    P++ TYN  +     +++   AE+    ++ 
Sbjct: 641 NSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQN 700

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
           +  +PD +SY+T+   + +  L ++A   L EM  +  +   V Y++ LS Y  M   DE
Sbjct: 701 SVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDE 760

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
              + + M+    + ++  Y  ++    K G+ E+A +   + + I  + D +
Sbjct: 761 ANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDK 813



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 9/246 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++ +Y +  +  +A  L  KM + G       YN +L +     + + V ++L E+
Sbjct: 394 TYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 453

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K N  +P+  T+N  LA C+ +       K   E+K    +PD  +++TL S Y +    
Sbjct: 454 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSE 513

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             +A    EM K         Y++LL+   + G       + + M +   K N+  Y+ +
Sbjct: 514 VDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLL 573

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN----QLEMAESFYNRLV 376
           +    K G     E +  E E   G   P    ILL   +  N     L   E  +++L 
Sbjct: 574 LHCYSKAGNVRGIEKV--EKEIYDGQVFPSW--ILLRTLVLSNHKCRHLRGMERAFDQLQ 629

Query: 377 TKGIKP 382
             G KP
Sbjct: 630 KYGYKP 635


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 138 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-------- 189
           R  DT   +  S        +A + +EKM E GF+     YN +++  + +G        
Sbjct: 157 RNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEV 216

Query: 190 ---------------------------QLDKVPQMLQELKK-NTSPDVVTYNLWLAACAS 221
                                       +  V  +L+E++     P++ TY + +     
Sbjct: 217 YRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGR 276

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A +    +      PD ++Y+ L          + A     +M+  + + ++V 
Sbjct: 277 DGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVT 336

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y +LL  +++ G+ D+V +IW +M +     +   +T ++++L K G   +A ++ D   
Sbjct: 337 YVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMR 396

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
                 +    N L++  +  N+L+ A   ++ + + G++P   T+ LL   + K G   
Sbjct: 397 KQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPG 456

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNS 460
           K LE F+K     R   P+     A+   L E G +  A+ +   L+++G     + YN 
Sbjct: 457 KALETFEKM--KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNM 514

Query: 461 LLRTYAKAGKM 471
           +++ Y+K G++
Sbjct: 515 MMKCYSKVGQV 525



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 133/300 (44%), Gaps = 4/300 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+   ++  +  +A  L   M   G       Y  +++ +  +G   K  +  +++
Sbjct: 406 TYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKM 465

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  +P++V  N  L + A       A+  F ELK + + PD ++Y+ +   Y K+   
Sbjct: 466 KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQV 525

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   L EM K  C  + +  +SL+      G  +E  +++ +M  +        Y  +
Sbjct: 526 DEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNIL 585

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++ L K G+ +KA  +++       + +    N LL      +++++A   + ++ T   
Sbjct: 586 LAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNC 645

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  +  G++K+ Q++  +  F +    +R   PDH  +      + + G I+ A
Sbjct: 646 RPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLR---PDHVTLCTLLPGVIKSGQIEDA 702



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/456 (21%), Positives = 188/456 (41%), Gaps = 50/456 (10%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
           TMRK   +G   + +  N ++  L +  R   AL++   ME    ++  +  Y + +D  
Sbjct: 394 TMRK---QGVLPNLHTYNTLISGLLRANRLDDALDLFSNME-SLGVEPTAYTYILLIDYH 449

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K      A   FE +  +   P+   C+A L+S  +  +  EA+A+  ++   G     
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDS 509

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN M+  Y   GQ+D+  ++L E+ K    PDV+  N  +         E A + F  
Sbjct: 510 VTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +++  + P  ++Y+ L +   K    +KA    + M    C  N + +++LL        
Sbjct: 570 MEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDE 629

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D  L+++ KM ++  + +   +  +I   +K  + + A  ++ + + +    D      
Sbjct: 630 VDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLL-RPDHVTLCT 688

Query: 355 LLAAYINRNQLE----MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           LL   I   Q+E    + E F+ ++   G     + WE +  G L +   EK +   ++ 
Sbjct: 689 LLPGVIKSGQIEDAFRITEDFFYQV---GSNIDRSFWEDVMGGILTEAGTEKAILFGERL 745

Query: 411 IG-----------SVRKWVPDHRLITAAYNKL----EEQGD----------IDG------ 439
           +             + K +  H+  + A N      +E G           IDG      
Sbjct: 746 VCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHN 805

Query: 440 ---AEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
              A +L   +++AG    T  YNSL+  + K+GK+
Sbjct: 806 VEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 5/227 (2%)

Query: 227 TAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
            A   F++  K+  + P    Y+ L   ++++   E A    +EM+   C  +   Y+SL
Sbjct: 772 VARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSL 831

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  +   G  +E+  ++ +M++   K N   Y  VIS+LVK    +KA ++Y    S   
Sbjct: 832 IDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDF 891

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  P     L+   +   +L+ A   ++ +V  G +P    + +L  GY K G ++   E
Sbjct: 892 SPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACE 951

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
            FK+ +   +R   PD +  T   + L   G +D A H    L+ AG
Sbjct: 952 FFKRMVKEGIR---PDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 128/306 (41%), Gaps = 3/306 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D +   R L  A   F  +      PD  T   LL  +       + E +  +M 
Sbjct: 302 YTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEME 361

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G+    + +  ++N     G++++   +L  ++K    P++ TYN  ++     N  +
Sbjct: 362 ADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLD 421

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  ++   ++P   +Y  L   + K   P KA  T ++M+ R    N VA ++ L
Sbjct: 422 DALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASL 481

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                MG   E   ++ ++ S     +   Y  ++    K+G+ ++A  +  E   +   
Sbjct: 482 YSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCE 541

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  V N L+       ++E A   + R+    + P   T+ +L  G  K+GQ++K ++ 
Sbjct: 542 PDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQL 601

Query: 407 FKKAIG 412
           F+   G
Sbjct: 602 FESMNG 607



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 3/264 (1%)

Query: 207  PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
            P +  YNL +      ++ E A   F E+K     PD  +Y++L   + K     +    
Sbjct: 788  PTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDL 847

Query: 267  LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
              EM  R C+ N + Y+ ++S        D+ + ++  ++S         +  +I  L+K
Sbjct: 848  YDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLK 907

Query: 327  LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
             G  + A  ++D         +  + NIL+  Y     ++ A  F+ R+V +GI+P   +
Sbjct: 908  SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKS 967

Query: 387  WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
            + +L       G+++  L  F+K         PD        N L      + A  L   
Sbjct: 968  YTILVDILCIAGRVDDALHYFEKL--KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHE 1025

Query: 447  LRNAGHV-STEIYNSLLRTYAKAG 469
            ++N G V     YNSL+      G
Sbjct: 1026 MQNRGIVPDLYTYNSLILNLGIVG 1049



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 107/258 (41%), Gaps = 1/258 (0%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
            L+  +++      A  L E+M   G       YN +++ +  +G+++++  +  E L + 
Sbjct: 796  LIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRG 855

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              P+ +TYN+ ++     N  + A   +  L      P   ++  L    +K    + A 
Sbjct: 856  CKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAH 915

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
                 M    CR N   Y+ L++ Y  +G+ D     +K+M+    + +   YT ++  L
Sbjct: 916  EMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDIL 975

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
               G  + A + +++ +      D    N+++       + E A S ++ +  +GI P  
Sbjct: 976  CIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDL 1035

Query: 385  TTWELLTWGYLKKGQMEK 402
             T+  L       G +E+
Sbjct: 1036 YTYNSLILNLGIVGMIEE 1053



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 3/303 (0%)

Query: 110  YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
            Y + +D   ++  +  A N FE +      PDT +  +L+ ++ ++ K  E   L ++M 
Sbjct: 793  YNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEML 852

Query: 168  ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
              G     + YN +++  + + +LDK   +   L   + SP   T+   +         +
Sbjct: 853  TRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLD 912

Query: 227  TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             A + F  +      P+   Y+ L + Y K+   + A    K M K   R +  +Y+ L+
Sbjct: 913  DAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILV 972

Query: 287  SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             +    G  D+ L  ++K+       +   Y  +I+ L +    E+A +++ E ++    
Sbjct: 973  DILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIV 1032

Query: 347  GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
             D    N L+        +E A   Y  L   G+KP   T+  L  GY   G  E     
Sbjct: 1033 PDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGI 1092

Query: 407  FKK 409
            +KK
Sbjct: 1093 YKK 1095



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 7/277 (2%)

Query: 121  RGLSSAENFFENLPDKM--RG--PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
             G S   N   +L D+M  RG  P+T +   ++ + V++ +  +A  L   +    F   
Sbjct: 835  HGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPT 894

Query: 175  PLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            P  +  +++  + +G+LD   +M   +      P+   YN+ +         +TA + F 
Sbjct: 895  PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFK 954

Query: 234  ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
             + K  I PD  SY+ L  +       + A    +++++     + VAY+ +++      
Sbjct: 955  RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQ 1014

Query: 294  YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              +E L ++ +M +     +   Y  +I +L  +G  E+A  IY+E + I    +    N
Sbjct: 1015 RTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYN 1074

Query: 354  ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
             L+  Y      E+A   Y +++  G  P   T+  L
Sbjct: 1075 ALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic [Vitis vinifera]
 gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
          Length = 692

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +Y ++ +  EAE L  +M   G +     YN +++ Y    Q + +  +L E++ 
Sbjct: 352 NTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQD 411

Query: 204 -NTSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               P+V +Y   ++A   Q    + A  AFL +KK  I P   SY+ L   Y      E
Sbjct: 412 MGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHE 471

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA T  + M++   + +   Y++LL  +   G    +++IWK M+S   +     +  ++
Sbjct: 472 KAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILL 531

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G + +A ++  E+  I         N+L+ AY    Q          + +  +K
Sbjct: 532 DGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLK 591

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   T+  + + Y++    ++     K+ + S +  VPD +    +Y KL    D+  A
Sbjct: 592 PDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQ--VPDPQ----SYQKLRSILDVKAA 644



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 133 LPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           L DK+ G   T + LL  + +     EA  ++ +  + GF    + YN ++N Y   GQ 
Sbjct: 516 LSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQH 575

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            ++PQ+L+E+   N  PD +TY+  + A     D + A     ++ K+   PD  SY  L
Sbjct: 576 SRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKL 635

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            S+     L  KAAT           KNR   S++L +
Sbjct: 636 RSI-----LDVKAAT-----------KNRKDRSAILGI 657



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 120/286 (41%), Gaps = 8/286 (2%)

Query: 189 GQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G  D +  +L+ L K     DV  YN  ++  +S    + A K + E++   I PD ++ 
Sbjct: 221 GMGDDLMVLLRNLPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTC 280

Query: 248 STLTSLYIKMELPEKAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           S + ++  K     K A    + M ++  + +     +L+  + + G K+E L I  +M 
Sbjct: 281 SIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEME 340

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   Y  ++ +  K    E+AE ++ E ++          NIL+ AY  R Q E
Sbjct: 341 KKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPE 400

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLI 424
           + E+    +   G++P   ++  L   Y   G+ +K+ +    A   ++K    P     
Sbjct: 401 IIENLLLEMQDMGLEPNVKSYTCLISAY---GRQKKMSDMAADAFLRMKKVGIKPTSHSY 457

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           TA  +     G  + A      ++  G   S E Y +LL  + +AG
Sbjct: 458 TALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAG 503



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 120/296 (40%), Gaps = 17/296 (5%)

Query: 118 SKIRGLSSAENF------FENLPDKMRGPD--TCSALLHSYVQNKKSA-EAEALMEKMSE 168
           S I GLSS   +      ++ +      PD  TCS ++    ++  SA +A    ++M+ 
Sbjct: 247 SAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNR 306

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKET 227
            G          ++  +   G  ++   +  E+ KK  S + + YN  + A +  N  E 
Sbjct: 307 KGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEE 366

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE  F E+K   + P   +Y+ L   Y +   PE     L EM+      N  +Y+ L+S
Sbjct: 367 AEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLIS 426

Query: 288 LYTNM-GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            Y       D     + +M  +  K     YT +I +    G  EKA   Y  +E++   
Sbjct: 427 AYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKA---YTAFENMKRE 483

Query: 347 G-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           G  P +     LL A+      +     +  +++  I+    T+ +L  G+ K+G 
Sbjct: 484 GIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGH 539


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 39/344 (11%)

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQN 223
           KM E GF      YN +++L + +G   +  +M + +  +   P + T++  + A   + 
Sbjct: 184 KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRR 243

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D ET +    E++   + P+  +Y+    +  +    ++A   +K ME   C  + V Y+
Sbjct: 244 DTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYT 303

Query: 284 SLLSLYTNMGYKDEVLRIWKKM------------MSLFAKMNDA---------------- 315
            L+      G  D+ + ++ KM            +++  K +D                 
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEAD 363

Query: 316 -------EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
                   +T ++++L K G  ++A ++ D         +    N L++  +  N+L+ A
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
              +N + T G+ P   T+ L    Y K G+ +K LE F+K    +R   P+     A+ 
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKM--KIRGIAPNIVACNASL 481

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L E G +  A+ +   L++ G     + YN +++ Y+KAG++
Sbjct: 482 YSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQV 525



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 8/273 (2%)

Query: 227  TAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A+  F+   K+  + P   SY+ L   ++ +   E A     EM+   C  +   Y+ L
Sbjct: 772  VAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLL 831

Query: 286  LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
            L  +   G  +E+  ++++M+    K N   +  +I++LVK    +KA +++ +  S   
Sbjct: 832  LDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDF 891

Query: 346  TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            +  P     LL   +   +LE A+  +  +V  G +P    + +L  G+ K G +    E
Sbjct: 892  SPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACE 951

Query: 406  CFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLR 463
             FK+    VR+ + PD +  T+    L E G +D A H    L+  G ++ +  YN ++ 
Sbjct: 952  LFKRM---VREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMID 1008

Query: 464  TYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
               ++ ++   L + + MQ   +  D  T   L
Sbjct: 1009 GLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL 1041



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 18/345 (5%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           +H Y  N ++  L ++ R   AL++   ME    +   +  Y + +D   K      A  
Sbjct: 404 LHTY--NTLISGLLRVNRLDDALDLFNNME-TLGVVPTAYTYILFIDFYGKSGRSDKALE 460

Query: 129 FFENLPDKMRG--PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
            FE +  K+RG  P+   C+A L+S  +  +  EA+ +  ++   G     + YN M+  
Sbjct: 461 TFEKM--KIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKC 518

Query: 185 YISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           Y   GQ+D+  ++L ++ +N   PD++  N  +         + A K F  LK  K+ P 
Sbjct: 519 YSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPT 578

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            ++Y+TL +   K    ++A      M    C  N + ++++L         D  L++  
Sbjct: 579 VVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLY 638

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           KM ++    +   +  +I  LV       A  ++ + + +  T D      LL   +   
Sbjct: 639 KMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKML-TPDCVTLCTLLPGVVKNG 697

Query: 364 QLE----MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            +E    +AE F +RL   G+      WE L  G L +   EK +
Sbjct: 698 LMEDAFKIAEDFVHRL---GVYVDRRFWEDLMGGILTQAGTEKTI 739



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 114/258 (44%), Gaps = 1/258 (0%)

Query: 146  LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
            L+  ++       A  L  +M   G       YN +L+ +  +G+++++ ++ +++   +
Sbjct: 796  LIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSS 855

Query: 205  TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              P+ +T+N+ +A     N  + A   F +L      P   +Y  L    +K    E+A 
Sbjct: 856  CKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAK 915

Query: 265  TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               +EM    CR N   Y+ L++ +   G  +    ++K+M+    + +   YT ++  L
Sbjct: 916  ELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCL 975

Query: 325  VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
             + G  + A + +++ +      D    N+++      +++E A + Y+ + ++GI P  
Sbjct: 976  CEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDL 1035

Query: 385  TTWELLTWGYLKKGQMEK 402
             T+  L       G +E+
Sbjct: 1036 FTYNSLILNLGVAGMVEQ 1053



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 42/370 (11%)

Query: 82  RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD 141
           R  +  K  LE  E + L+ +I      Y + + ++ +   +  A    + + D   GPD
Sbjct: 243 RDTETVKSLLEEMESLGLKPNIY----TYTICIRVLGRAGRIDEACRIMKRMEDDGCGPD 298

Query: 142 --TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
             T + L+ +     K  +A  L  KM         + Y  ML+ +   G L +V +   
Sbjct: 299 VVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWS 358

Query: 200 ELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E++ +  +PDV+T+ + + A     + + A      ++K  + P+  +Y+TL S  +++ 
Sbjct: 359 EMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVN 418

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A      ME          Y   +  Y   G  D+ L  ++KM       N     
Sbjct: 419 RLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACN 478

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY---------------INRN 363
             + SL ++G   +A+ I++  +S     D    N+++  Y               ++ N
Sbjct: 479 ASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSEN 538

Query: 364 QLE----MAESFYNRLVTKG----------------IKPCYTTWELLTWGYLKKGQMEKV 403
           Q E    +  S  N L   G                + P   T+  L  G  K+GQ+++ 
Sbjct: 539 QCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRA 598

Query: 404 LECFKKAIGS 413
           +E F    G+
Sbjct: 599 MELFASMTGN 608



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 89/203 (43%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P + +YN  +      ++ E A   F E+K     PD  +Y+ L   + K     +    
Sbjct: 788 PTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFEL 847

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            ++M   +C+ N + ++ +++        D+ L ++  ++S         Y  ++  L+K
Sbjct: 848 YEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLK 907

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  E+A+ +++E        +  + NIL+  +     +  A   + R+V +GI+P   +
Sbjct: 908 SGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKS 967

Query: 387 WELLTWGYLKKGQMEKVLECFKK 409
           +  L     + G+++  L  F+K
Sbjct: 968 YTSLVGCLCEAGRVDDALHYFEK 990



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 107/250 (42%), Gaps = 1/250 (0%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T + ++ + V++    +A  L   +    F   P  Y  +L+  + +G+L++  ++ +E+
Sbjct: 862  THNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEM 921

Query: 202  KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                  P+   YN+ +       D  TA + F  + +  I PD  SY++L     +    
Sbjct: 922  VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRV 981

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            + A    +++++     + +AY+ ++         +E L ++ +M S     +   Y  +
Sbjct: 982  DDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL 1041

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            I +L   G  E+A  +Y+E + I    +    N L+  Y      + A + Y R++  G 
Sbjct: 1042 ILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGC 1101

Query: 381  KPCYTTWELL 390
             P   T+  L
Sbjct: 1102 SPNTGTFAQL 1111



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 81   LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
            L K  R + A E+ E M + Y  +  +  Y + ++   K   +++A   F+ +  +   P
Sbjct: 905  LLKSGRLEEAKELFEEM-VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRP 963

Query: 141  D--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
            D  + ++L+    +  +  +A    EK+ + G     + YN M++    + ++++   + 
Sbjct: 964  DLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLY 1023

Query: 199  QELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
             E++ +  +PD+ TYN  +         E A K + EL+   ++P+  +Y+ L   Y   
Sbjct: 1024 DEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMS 1083

Query: 258  ELPEKAATTLKEMEKRTCRKNRVAYSSL 285
               + A    K M    C  N   ++ L
Sbjct: 1084 GNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 198/444 (44%), Gaps = 18/444 (4%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  K++   + +CEW+  +   +     Y + +D   +       E+ +  L + 
Sbjct: 125 VAVQLRLNKKWGPIILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLES 184

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y ++    +AEA+  +M + G     + YN  ++  +  G   K 
Sbjct: 185 HCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKA 244

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++   +K++   P   TY + +     ++    A+  F E++  +  P+  +++ L + 
Sbjct: 245 VEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNA 304

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             +  L EKA    ++M++     +  AY++L+  Y+  G+      I+  M  +  + +
Sbjct: 305 LAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPD 364

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  E A+ +++E + I  T   +   +LL+AY +   +   E    
Sbjct: 365 RASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIG 424

Query: 374 RLVTKGIKP-CYTTWELLT-WGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
           ++   G+KP  +    +L  +G L + G+ME +    +K  G  R  +  + ++   Y +
Sbjct: 425 QMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQK--GPCRADISTYNILINVYGR 482

Query: 431 LEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYA--KAGKMPLIIVERMQKDNVQM 486
               G ++  E L   L  A ++  ++  + S +  Y+  K  K  L + E+M       
Sbjct: 483 ---AGFVERMEELF-QLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYP 538

Query: 487 DAETQKVL--KITSEMPVSEVSSI 508
           D  T KVL    +SE  + +V+++
Sbjct: 539 DGGTAKVLLSACSSEEQIEQVTNV 562



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL +Y      A+ E ++ +M + G        N MLNLY   GQ  K+  +   ++K  
Sbjct: 406 LLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP 465

Query: 206 S-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              D+ TYN+ +         E  E+ F  L    ++PD +++++    Y + +L ++  
Sbjct: 466 CRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCL 525

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
              ++M    C  +      LLS  ++    ++V  + + M
Sbjct: 526 ELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 566


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 178/450 (39%), Gaps = 42/450 (9%)

Query: 50  YAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           ++ R+A  +MR    E + VH Y    ++      +  + A+   E ME +  +   +  
Sbjct: 209 HSARAAFESMRAAGIEPN-VHSY--TNLIHAYAVAQDLRGAIACVEEMEAE-GVSPNAAT 264

Query: 110 YAVHLDLISKIRGLSSAENFFEN-LPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMS 167
           Y+V +    ++  + +AE +F+  L +     D   + ++H+Y +      AEA+M  M 
Sbjct: 265 YSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAME 324

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
           E G       YN +++ Y+    +DK   + + LK  T                      
Sbjct: 325 EQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKART---------------------- 362

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
                    +T + P  +SY  L +LY K+   +KA     EME +  + NR  YS ++ 
Sbjct: 363 ---------ETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIID 413

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y  +G       +++ M +   K +   Y  ++++  K G+  +A  +    ES     
Sbjct: 414 GYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPP 473

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
             R   I++  ++    L MA      +   G +P   T+ ++  G  + GQM++     
Sbjct: 474 TLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASII 533

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
            + +  V    P+ R  T         GD+  A      ++  G     I Y SLL+   
Sbjct: 534 DEMV--VAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACC 591

Query: 467 KAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           KAG+M   L I   M    V M+     +L
Sbjct: 592 KAGRMQSTLAITAEMAAAGVPMNNYIYNIL 621



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 17/324 (5%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +++   K+   P    + L +     + DK +A  AF  ++   I+P+  SY+ L   Y 
Sbjct: 179 KVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYA 238

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
             +    A   ++EME      N   YS ++S Y  +G  +   R +++ +S     ND 
Sbjct: 239 VAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDV 298

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            Y  +I +  K G  E+AE I    E         + N+L+  Y++   ++   + + RL
Sbjct: 299 IYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRL 358

Query: 376 VTK---GIKPCYTTWELLTWGYLKKGQMEKVL----ECFKKAIGSVRKWVPDHRLITAAY 428
             +   G+ P   ++  L   Y K G+M+K L    E   + I   RK    + +I   Y
Sbjct: 359 KARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRK---TYSMIIDGY 415

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
            +L   GD   A  +   + NAG     I YN L+  + K G+M   L ++ RM+  +  
Sbjct: 416 VQL---GDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCP 472

Query: 486 MDAETQKVLKITSEMPVSEVSSIF 509
               T  ++ I   M + ++   F
Sbjct: 473 PTLRTYTII-IDGFMKIGDLRMAF 495



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 160/425 (37%), Gaps = 57/425 (13%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N I+    K    + A  +   ME Q  ++   G Y + +D     R +    N F  L 
Sbjct: 301 NNIIHAYCKAGNMERAEAIMTAMEEQ-GLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLK 359

Query: 135 DKMR---GPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +      P   S   L++ Y +  K  +A  +  +M + G       Y+ +++ Y+  G
Sbjct: 360 ARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLG 419

Query: 190 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
                  + +++      PD +TYN+ + A         A +    ++     P   +Y+
Sbjct: 420 DTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYT 479

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            +   ++K+     A  T+++M+    R +   Y+ ++      G  D    I  +M+  
Sbjct: 480 IIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVA 539

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N+  YT +I     +G+                                   + +A
Sbjct: 540 GVHPNERSYTTLIEGYACIGD-----------------------------------MGLA 564

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
             ++NR+   G+KP    +  L     K G+M+  L    +   +    VP +  I   Y
Sbjct: 565 FKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAA---GVPMNNYI---Y 618

Query: 429 NKL----EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQ 480
           N L     ++GD+  A  ++  +R+ G ++ +I  Y S +    KAG M      +E+M+
Sbjct: 619 NILLDGWAQRGDMWEASDIMQKMRHEG-LTPDIHSYTSFINACCKAGDMLKATETIEQMK 677

Query: 481 KDNVQ 485
           +  VQ
Sbjct: 678 QQGVQ 682


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 148/332 (44%), Gaps = 3/332 (0%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  K++   + +C W+  +         Y + +D   +      AE+ +  L + 
Sbjct: 176 VAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEA 235

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y  +    +AEA+  +M + GF    + YN  ++  +  G   K 
Sbjct: 236 RCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKA 295

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ + +K++   P   TY + +      +    A K F E++  K  P+  +++ L + 
Sbjct: 296 VEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 355

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    +++++     +  AY++L+  Y+  G+      I+  M  +  + +
Sbjct: 356 FAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD 415

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  E A+ +++  + +  T   +   +LL+AY    ++   E   N
Sbjct: 416 RASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN 475

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           ++   GIKP       +   Y + GQ EK+ E
Sbjct: 476 QMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEE 507



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 139/323 (43%), Gaps = 10/323 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +++ Y       K     L+ L+    P   TY L L A  +    E AE  F E++
Sbjct: 209 YNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMR 268

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    P  + Y+      +K    +KA    + M++  C+ +   Y+ L++LY       
Sbjct: 269 KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSY 328

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L+++ +M S   K N   +T ++++  + G  EKAE I+++ +      D    N L+
Sbjct: 329 MALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALM 388

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSV 414
            AY        A   ++ +   G +P   ++ ++   Y + G  E     F+  K +G +
Sbjct: 389 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG-I 447

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL 473
              +  H L+ +AY++    G +   E ++  +  +G    T + NS+L  Y + G+   
Sbjct: 448 TPTMKSHMLLLSAYSR---AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK 504

Query: 474 I--IVERMQKDNVQMDAETQKVL 494
           +  ++  M+K     D  T  +L
Sbjct: 505 MEEVLTAMEKGPYPADISTYNIL 527



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 1/161 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL +Y +  K A+ E ++ +M + G        N MLNLY   GQ +K+ ++L  ++K  
Sbjct: 457 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 516

Query: 206 SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            P D+ TYN+ +            E+ F  L    + PD +++++    Y + +   +  
Sbjct: 517 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 576

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
              +EM    C  +      LLS  +N     EV  + + M
Sbjct: 577 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 617



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 105/244 (43%), Gaps = 3/244 (1%)

Query: 126 AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  FE L +    PD  +  AL+ +Y +      A  +   M   G       YN M++
Sbjct: 365 AEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 424

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            Y   G  +    + + +K+   +P + ++ L L+A +        E+   ++ K+ I P
Sbjct: 425 AYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 484

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D    +++ +LY ++   EK    L  MEK     +   Y+ L+++Y   G+   +  ++
Sbjct: 485 DTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELF 544

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + + +     +   +T  I +  +  ++ +   +++E        D     +LL+A  N 
Sbjct: 545 RSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 604

Query: 363 NQLE 366
           +Q++
Sbjct: 605 DQIQ 608


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 144/300 (48%), Gaps = 10/300 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN ++ + +  GQ +KV ++  E+  + +  PD +TY+  +++       ++A + F E+
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   + P    Y+TL  +Y K+   EKA    +EM++  C      Y+ L+      G  
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-- 353
           +E   ++K M++     +      +++ L K+G  E+  N+++E  +   T  P V +  
Sbjct: 320 EEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCT--PTVVSYN 377

Query: 354 -ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            ++ A + ++  +    S+++++   G+ P   T+ +L  GY K  ++EK L   ++   
Sbjct: 378 TVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEM-- 435

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
             + + P      +  N L +    + A  L   L+ N G+VS+ +Y  +++ + K GK+
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 127/303 (41%), Gaps = 4/303 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L +  K+  +  A + FE +      P   T + L+    +  +  EA  L + M 
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML 330

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC-ASQNDK 225
             G     +  N+++N+    G+L+++  +  E+     +P VV+YN  + A   S+   
Sbjct: 331 TDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPV 390

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
                 F ++K   + P   +YS L   Y K    EKA   L+EM+++       AY SL
Sbjct: 391 SEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSL 450

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++        +    ++K++   F  ++   Y  +I    K G+  +A ++++E ++   
Sbjct: 451 INALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS 510

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L++  +    +  A S   ++   G      +  ++  G+ + G   + +E
Sbjct: 511 GPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIE 570

Query: 406 CFK 408
            F+
Sbjct: 571 MFE 573



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 38/225 (16%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGD-YAVHLDLISKIRGLSSAENFFENLPD 135
           ++  L K KRY+ A E+  + EL+ +   VS   YAV +    K   LS A + F  + +
Sbjct: 450 LINALGKAKRYEAANEL--FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKN 507

Query: 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           +  GPD  +                                 YN +++  +  G +++  
Sbjct: 508 QGSGPDVYA---------------------------------YNALMSGMVKAGMVNEAN 534

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+++++N  + D+ ++N+ L   A       A + F  +K   I PD ++Y+TL   +
Sbjct: 535 SLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCF 594

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEV 298
               + E+AA  ++EM+ +    + + YSS+L    NM + KD+V
Sbjct: 595 AHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHEKDDV 639



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 79/200 (39%), Gaps = 36/200 (18%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+  Y +  +  +A  L+E+M E GF  CP  Y  ++N      + +   ++ +EL
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 202 KKN------------------------------------TSPDVVTYNLWLAACASQNDK 225
           K+N                                    + PDV  YN  ++        
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMV 530

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A     ++++     D  S++ + + + +  +P +A    + M+    + + V Y++L
Sbjct: 531 NEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTL 590

Query: 286 LSLYTNMGYKDEVLRIWKKM 305
           L  + + G  +E  R+ ++M
Sbjct: 591 LGCFAHAGMFEEAARLMREM 610



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 13/257 (5%)

Query: 155 KSAEAEALMEKMSECGFLKCP---LPYNHMLN-LYISNGQLDKVPQMLQELKKN-TSPDV 209
           K    E L    +E G  +C    + YN ++  L+ S   + +V     ++K +  SP  
Sbjct: 350 KVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSE 409

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
            TY++ +      N  E A     E+ +    P   +Y +L +   K +  E A    KE
Sbjct: 410 FTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKE 469

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           +++     +   Y+ ++  +   G   E + ++ +M +  +  +   Y  ++S +VK G 
Sbjct: 470 LKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGM 529

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAY----INRNQLEMAESFYNRLVTKGIKPCYT 385
             +A ++  + E    T D    NI+L  +    + R  +EM E+  +     GIKP   
Sbjct: 530 VNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKH----CGIKPDGV 585

Query: 386 TWELLTWGYLKKGQMEK 402
           T+  L   +   G  E+
Sbjct: 586 TYNTLLGCFAHAGMFEE 602



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 3/205 (1%)

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++ T +    +  S L     + ++  KA +   + + R C+     Y+S++ +    G 
Sbjct: 153 VRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQ 212

Query: 295 KDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
            ++V  ++ +M +      D   Y+ +ISS  KLG  + A  ++DE +        ++  
Sbjct: 213 HEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYT 272

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            LL  Y    ++E A   +  +   G  P   T+  L  G  K G++E+  + +K  +  
Sbjct: 273 TLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML-- 330

Query: 414 VRKWVPDHRLITAAYNKLEEQGDID 438
                PD   +    N L + G ++
Sbjct: 331 TDGLTPDVVFLNNLMNILGKVGRLE 355



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/272 (18%), Positives = 106/272 (38%), Gaps = 4/272 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKS-AEAEALMEKMSECG 170
           ++++ K+  L    N F  +      P   S   ++ +  ++K   +E  +  +KM   G
Sbjct: 345 MNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADG 404

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
                  Y+ +++ Y    +++K   +L+E+ +K   P    Y   + A       E A 
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           + F ELK+   +     Y+ +   + K     +A     EM+ +    +  AY++L+S  
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  +E   + +KM       +   +  +++   + G   +A  +++  +      D 
Sbjct: 525 VKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDG 584

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
              N LL  + +    E A      +  KG +
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARLMREMKDKGFE 616


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 158/349 (45%), Gaps = 24/349 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDY------AVHLDLISKI 120
           + NR++  + KLK+Y   + + + ME+       Y   +V   +      ++ L ++ K+
Sbjct: 190 DFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKM 249

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             L      +E  PD++    T  +L++ + +  + ++A +L++KM E G+    + YN 
Sbjct: 250 LKLG-----YE--PDRV----TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 298

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++      +++      +E+ +K   P+VVTY   +    + +    A +   ++ K K
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P+ I+YS L   ++K     +A    +EM + +   + V YSSL++        DE  
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 418

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +++  M+S     +   Y  +I+   K    E    ++ E        +    N L+  +
Sbjct: 419 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
                ++ A+ F++++   GI P   T+ +L  G    G++EK L  F+
Sbjct: 479 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 527



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 11/346 (3%)

Query: 72   YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL------SS 125
            YE N IV     L  Y H+  + E + L  D   V+G     +   + I GL      S 
Sbjct: 761  YEPN-IVTLSSLLNGYCHSKRISEAVAL-VDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 818

Query: 126  AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
            A    + +  K   PD  T   +++   +   +  A  L+ KM +       L YN +++
Sbjct: 819  AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 878

Query: 184  LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
                   +D    + +E++ K   P+VVTY+  ++   +      A +   ++ + KI+P
Sbjct: 879  GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 938

Query: 243  DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
            D  ++S L   ++K     +A     EM KR+   + V YSSL++ +      DE  +++
Sbjct: 939  DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998

Query: 303  KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
            + M+S     +   Y  +I    K    E+   ++ E       G+    NIL+      
Sbjct: 999  EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 1058

Query: 363  NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               +MA+  +  +V+ G+ P   T+  L  G  K G++EK +  F+
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 1104



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 144  SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
            + ++    + K   +A  L ++M   G     + Y+ +++   + G+     ++L ++ +
Sbjct: 874  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 933

Query: 203  KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            +  +PDV T++  + A   +     AEK + E+ K  IDP  ++YS+L + +   +  ++
Sbjct: 934  RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 993

Query: 263  AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
            A    + M  + C  + V Y++L+  +      +E + ++++M       N   Y  +I 
Sbjct: 994  AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 1053

Query: 323  SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
             L + G+ + A+ I+ E  S     +    N LL       +LE A   +  L    ++P
Sbjct: 1054 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 1113

Query: 383  CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               T+ ++  G  K G++E   + F     S++   PD        +    +G  + A+ 
Sbjct: 1114 TIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADA 1171

Query: 443  LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
            L   ++  G + ++  YN+L+R   + G
Sbjct: 1172 LFKEMKEDGTLPNSGCYNTLIRARLRDG 1199



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  +  A++ S  + K+  +A    +++   G     + Y  ++N   ++ +     ++
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L ++ KK  +P+V+TY+  L A         A++ F E+ +  IDPD ++YS+L +    
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 410

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +  ++A      M  + C  + V+Y++L++ +      ++ ++++++M       N   
Sbjct: 411 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 470

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    + G+ +KA+  + + +    + D    NILL    +  +LE A   +  + 
Sbjct: 471 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 530

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            + +     T+  +  G  K G++E+    F     S++   PD    T   + L  +G 
Sbjct: 531 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL--SLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 437 IDGAEHLLVTLRNAG 451
           +   E L   ++  G
Sbjct: 589 LHEVEALYTKMKQEG 603



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 148/351 (42%), Gaps = 47/351 (13%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T + L+H    + K++EA AL+++M   G     + Y  ++N     G  D    +L ++
Sbjct: 802  TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 861

Query: 202  KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++    P V+ YN  +         + A   F E++   I P+ ++YS+L S        
Sbjct: 862  EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 921

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
              A+  L +M +R    +   +S+L                                   
Sbjct: 922  SDASRLLSDMIERKINPDVFTFSAL----------------------------------- 946

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTK 378
            I + VK G+  +AE +YDE   +  + DP +     L+  +   ++L+ A+  +  +V+K
Sbjct: 947  IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 1004

Query: 379  GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
               P   T+  L  G+ K  ++E+ +E F++   S R  V +          L + GD D
Sbjct: 1005 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM--SQRGLVGNTVTYNILIQGLFQAGDCD 1062

Query: 439  GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQ 485
             A+ +   + + G V   I  YN+LL    K GK+   +++ E +Q+  ++
Sbjct: 1063 MAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 1112



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 39/346 (11%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K  E G+       N I+  L K KR   A +  + +E +  I+     Y   ++ +   
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIE-RKGIRPNVVTYTALVNGLCNS 341

Query: 121 RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
              S A     ++  K   P+  T SALL ++V+N K  EA+ L E+M            
Sbjct: 342 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM------------ 389

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
                                 ++ +  PD+VTY+  +      +  + A + F  +   
Sbjct: 390 ----------------------VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 427

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
               D +SY+TL + + K +  E      +EM +R    N V Y++L+  +   G  D+ 
Sbjct: 428 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 487

Query: 299 LRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              + + M  F    D   Y  ++  L   GE EKA  I+++ +      D      ++ 
Sbjct: 488 QEFFSQ-MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 546

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                 ++E A S +  L  KG+KP   T+  +  G   KG + +V
Sbjct: 547 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 592



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 146/373 (39%), Gaps = 84/373 (22%)

Query: 75   NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFE 131
            N I+  L K K    AL + + ME     K +  +   +  LIS +      S A     
Sbjct: 874  NTIIDGLCKYKHMDDALNLFKEME----TKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 929

Query: 132  NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            ++ ++   PD  T SAL+ ++V+  K  EAE L ++M +       + Y+ ++N +  + 
Sbjct: 930  DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 989

Query: 190  QLDKVPQMLQEL-KKNTSPDVVTYN----------------------------------- 213
            +LD+  QM + +  K+  PDVVTYN                                   
Sbjct: 990  RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 1049

Query: 214  LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
            + +       D + A++ F E+    + P+ ++Y+TL     K    EKA    + +++ 
Sbjct: 1050 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 1109

Query: 274  ---------------TCRKNR--------------------VAYSSLLSLYTNMGYKDEV 298
                            C+  +                    VAY++++S +   G K+E 
Sbjct: 1110 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 1169

Query: 299  LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNI 354
              ++K+M       N   Y  +I + ++ G+ E +  +  E  S    GD      V N+
Sbjct: 1170 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 1229

Query: 355  LLAAYINRNQLEM 367
            L    ++++ L+M
Sbjct: 1230 LHDGRLDKSFLDM 1242



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 1/225 (0%)

Query: 186 ISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           +S  +LD    +  E+ K+   P ++ ++  L+A A  N  +       +++   I  + 
Sbjct: 671 LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 730

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +YS L + + +      A   L +M K     N V  SSLL+ Y +     E + +  +
Sbjct: 731 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 790

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M     + N   +  +I  L    +  +A  + D   +     D     +++     R  
Sbjct: 791 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 850

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            ++A +  N++    ++P    +  +  G  K   M+  L  FK+
Sbjct: 851 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 895


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 144/331 (43%), Gaps = 3/331 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +++Q  +  +A  ++++M E G       YN ++       ++D+    L E+ +
Sbjct: 459 TTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   PD  TY  +++      +  +A+K   E+ +  + P+ +  + L + Y K     +
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIE 578

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A +  + M ++    +   Y+ L++     G  ++   I+ +M       +   Y  +I 
Sbjct: 579 ACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLID 638

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              KLG  +KA +I+DE      T +  + N+LL  +    ++E A+   + +  KG  P
Sbjct: 639 GFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPP 698

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  GY K G + +  + F +    ++  VPD  + T   +      D++ A  
Sbjct: 699 NAVTYCTIIDGYCKSGDLAEAFQLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAIT 756

Query: 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
           +  T       S+  +N+L+    K GK  L
Sbjct: 757 IFETNEKGCASSSAPFNALINWVFKFGKTEL 787



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 129/302 (42%), Gaps = 8/302 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ + K   ++ AE  F  +  K   PD  S   L+  + +     +A ++ ++M 
Sbjct: 598 YTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMV 657

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           + G     + YN +L  +  +G+++K  ++L E+  K   P+ VTY   +       D  
Sbjct: 658 QAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLA 717

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F E+K   + PD   Y+TL     ++   E+A T  +  EK  C  +   +++L+
Sbjct: 718 EAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEK-GCASSSAPFNALI 776

Query: 287 SLYTNMG----YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +     G      D + R+       F K ND  Y  +I  L K G  E A+ ++   + 
Sbjct: 777 NWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQK 836

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
            +          LL  Y    +     S ++ ++  GI+P    + ++   +LK+G   K
Sbjct: 837 ANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTK 896

Query: 403 VL 404
            L
Sbjct: 897 AL 898



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 142/336 (42%), Gaps = 6/336 (1%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G    ++L+  + + K   +   L+ ++ +   +  P  Y   +    S+G LD    ++
Sbjct: 384 GARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIV 443

Query: 199 QEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +E+      P+VV Y   +     ++    A +   E+++  I PD   Y++L     K 
Sbjct: 444 KEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKA 503

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           +  ++A + L EM +   + +   Y + +S Y   G      +  K+M+      N    
Sbjct: 504 KKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLC 563

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I+   K G+  +A + +         GD +   +L+   +   ++  AE  ++ +  
Sbjct: 564 TGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRG 623

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWVPDHRLITAAYNKLEEQGD 436
           KGI P   ++  L  G+ K G M+K    F + +   +   V  + ++   + +    G+
Sbjct: 624 KGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCR---SGE 680

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           I+ A+ LL  +   G     + Y +++  Y K+G +
Sbjct: 681 IEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDL 716



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 146/362 (40%), Gaps = 37/362 (10%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKN 204
           L+    + K+  +A++L+ +M+  G     + Y+ +++  +     D    ++ E+    
Sbjct: 286 LIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHG 345

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            S D + Y+ ++   + +   E A+  F  +    + P   +Y++L   + + +   K  
Sbjct: 346 FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGY 405

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             L E++KR    +   Y + +    + G  D    I K+M +   + N   YT +I + 
Sbjct: 406 ELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTF 465

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           ++   F  A  +  E        D    N L+       +++ A SF   +V  G KP  
Sbjct: 466 LQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDA 525

Query: 385 TTWELLTWGYLKKGQ-------MEKVLEC---------------------FKKAIGSVRK 416
            T+     GY++ G+       ++++LEC                       +A  + R 
Sbjct: 526 FTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRS 585

Query: 417 WVP-----DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
            V      D +  T   N L + G ++ AE +   +R  G ++ ++  Y +L+  ++K G
Sbjct: 586 MVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG-IAPDVFSYGTLIDGFSKLG 644

Query: 470 KM 471
            M
Sbjct: 645 NM 646



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L+ A   F+ +  K   PD+   + L+    +      A  + E  +
Sbjct: 703 YCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET-N 761

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----KKNTSPDVVTYNLWLAACASQ 222
           E G      P+N ++N     G+ +    M+  L      K   P+ VTYN+ +     +
Sbjct: 762 EKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKE 821

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
            + E A++ F  ++K  + P  I+Y++L + Y KM    +  +   E+       + + Y
Sbjct: 822 GNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMY 881

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFA-----KMNDAEYTCVISSLVKLGEFEKAENI 336
           S +++ +   G   + L +  +M +  A     K++ +    ++S   K+GE E AE +
Sbjct: 882 SVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 940



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 115/310 (37%), Gaps = 60/310 (19%)

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFL---- 233
           NH+L+  +   +LD    + + + ++N   DV +Y + + A     + + A+   L    
Sbjct: 193 NHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEE 252

Query: 234 -------------ELKKT----KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                        ELKK+     + P   SY+ L     K +  E A + L EM      
Sbjct: 253 ELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLF 312

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + VAYS L                                   I  L+K    + A  +
Sbjct: 313 ADNVAYSIL-----------------------------------IDGLLKGRNADAANGL 337

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             E  S   + DP + +  +        +E A++ ++ ++T G+ P    +  L  G+ +
Sbjct: 338 VHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFR 397

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVST 455
           +  + K  E   +     R  V        A   +   GD+DGA +++  +  +G   + 
Sbjct: 398 EKNVRKGYELLVEI--KKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNV 455

Query: 456 EIYNSLLRTY 465
            IY +L++T+
Sbjct: 456 VIYTTLIKTF 465


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 8/306 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  + +A   F+ +  +   P+  T  +L++  +Q+KK  +A AL+ KM 
Sbjct: 461 YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQ 520

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL-AACASQNDK 225
           E G     + Y  ++       + D   ++ + ++KN  +PD   YN+   A C S    
Sbjct: 521 EDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGR-- 578

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             AE+A+  L +  +    ++Y++L   + K    + AA  +++M    C+ +   YS L
Sbjct: 579 --AEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVL 636

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L         +E L I  +M     K N   YT +IS ++K G+ + A+++++E  S   
Sbjct: 637 LQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                   + +++Y    Q+E AE     +   G+ P   T+ +   G    G M++   
Sbjct: 697 KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFS 756

Query: 406 CFKKAI 411
             K+ +
Sbjct: 757 TLKRMV 762



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 152/385 (39%), Gaps = 62/385 (16%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTY---- 212
           EAE L+      GF    + + +++N Y    ++D   ++   +   N   D+  Y    
Sbjct: 371 EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLI 430

Query: 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
           N+ +  C  +  KET  + F       + P+ + Y+++   Y K+ +   A    K ME 
Sbjct: 431 NVLIKKCRLKEAKETLNEMF----ANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEH 486

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-------AEYTCVISSLV 325
             C  N   Y SL+        +D+ L    K M+L  KM +         YT +I    
Sbjct: 487 EGCHPNAWTYGSLIYGLI----QDKKLH---KAMALITKMQEDGITPGVIAYTTLIQGQC 539

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K  EF+ A  +++  E    T D +  N+L  A     + E A SF   LV KG+     
Sbjct: 540 KKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSF---LVRKGVVLTKV 596

Query: 386 TWELLTWGYLKKGQ-------MEKVLE-----------------CFKKAIGSV-----RK 416
           T+  L  G+ K G        +EK++                  C +K +        + 
Sbjct: 597 TYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQM 656

Query: 417 WVPDHRLITAAY----NKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKM 471
            V   +    AY    +++ ++G  D A+ L   + ++GH  S   Y   + +Y K G++
Sbjct: 657 TVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQI 716

Query: 472 PLI--IVERMQKDNVQMDAETQKVL 494
                ++  M++D V  D  T  + 
Sbjct: 717 EEAEHLIGEMERDGVTPDVVTYHIF 741



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 49/295 (16%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD VTYN  + A   +     A + F  L+++ +  D  + + L   Y +     KA   
Sbjct: 177 PDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWL 236

Query: 267 LKEMEKRTCRKNRVAYSSLL-SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
           L  M    CR+N  +Y+ L+  LY     ++ ++ ++  M+     +N   YT +I  L 
Sbjct: 237 LMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVF-MMVQDGCSLNLHMYTLLIKGLC 295

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K G    A  + DE                                   +  +G+ P   
Sbjct: 296 KEGRIHDARGLLDE-----------------------------------MPLRGVVPSVW 320

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEH 442
           T+  +  GY K G+M+  L    KA+       PD       YN L      G +D AE 
Sbjct: 321 TYNAMIDGYCKSGRMKDALGI--KALMEQNGCNPDDW----TYNSLIYGLCGGKLDEAEE 374

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           LL      G   T I + +L+  Y KA ++   L +   M   N ++D +   VL
Sbjct: 375 LLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/275 (17%), Positives = 104/275 (37%), Gaps = 17/275 (6%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + ++   ++  K   A++L  +M   G       Y   ++ Y   GQ+++   ++ E+++
Sbjct: 669 TIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 728

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PDVVTY++++  C      + A      +     +P+  +Y  L   ++KM L   
Sbjct: 729 DGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINA 788

Query: 263 AATT----------------LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
                               L+ M K       V YSS+++ +      +E   +   M+
Sbjct: 789 HYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHML 848

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N+  YT +I     +  F K  +   +             + L+    +    +
Sbjct: 849 GKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYD 908

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
            A+S +  L+          W++L  G LK G ++
Sbjct: 909 RAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVD 943



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/309 (18%), Positives = 121/309 (39%), Gaps = 6/309 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
             L++  ++  +  EA+  + +M   G     + Y  +++ Y   G +    ++ + ++ 
Sbjct: 427 GVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEH 486

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P+  TY   +           A     ++++  I P  I+Y+TL     K    + 
Sbjct: 487 EGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDN 546

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + MEK     +  AY+ L       G  +E      +   +  K+    YT ++ 
Sbjct: 547 AFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVT---YTSLVD 603

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  + A  + ++  +     D    ++LL A   + +L  A S  +++   G+K 
Sbjct: 604 GFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKC 663

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               + ++    +K+G+ +     F + I S  K  P     T   +   + G I+ AEH
Sbjct: 664 NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHK--PSATTYTVFISSYCKIGQIEEAEH 721

Query: 443 LLVTLRNAG 451
           L+  +   G
Sbjct: 722 LIGEMERDG 730



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 104/272 (38%), Gaps = 20/272 (7%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+  + +   +  A  L+EKM   G       Y+ +L       +L++   +L ++
Sbjct: 597 TYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQM 656

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                  ++V Y + ++    +   + A+  F E+  +   P   +Y+   S Y K+   
Sbjct: 657 TVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQI 716

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   + EME+     + V Y   ++   +MGY D      K+M+    + N   Y   
Sbjct: 717 EEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTY--- 773

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
               + L  F K   I   +   SG               N  +L        R++  G+
Sbjct: 774 ---WLLLKHFLKMSLINAHYIDTSGMW-------------NWIELNTVWQLLERMMKHGL 817

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            P   T+  +  G+ K  ++E+        +G
Sbjct: 818 NPTVVTYSSIIAGFCKATRLEEACVLLDHMLG 849


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 158/366 (43%), Gaps = 12/366 (3%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
             ++  + G   + Y  N ++     + ++K  +++ E M  +  +K     Y   L+ +
Sbjct: 256 VFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSAR-GLKPDCYTYGSLLNYL 314

Query: 118 SKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K      A  FF+++  K   P   T   L+H Y      +E  + ++ M E G     
Sbjct: 315 CKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLS--- 371

Query: 176 LPYNHMLNLYISN----GQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEK 230
            P +H+ N++ S     G +DK   +  +++++  SP+VV Y   + A       + AE 
Sbjct: 372 -PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F ++    + P+ + +++L      ++  E+A   + EM  +    N V +++L+    
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC 490

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           N+G   E  R+   M  +  + +   YT +IS     G  ++AE ++D   SI  +    
Sbjct: 491 NVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEV 550

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N LL  Y + ++++ A   +  ++ KG+ P   T+  +  G  +  +  +  E +   
Sbjct: 551 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 610

Query: 411 IGSVRK 416
           I S  K
Sbjct: 611 INSGTK 616



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 6/289 (2%)

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLN 183
             + +P+    PDT S   LL      K++ EA  L+  M++    +CP   + Y+ ++N
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            + + GQ+DK   +  E+  +   PDVVTY   +         + AE  F ++      P
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           +  +Y+ L   Y+ +   ++    L+EM  R  + +   Y SLL+     G   E    +
Sbjct: 268 NNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFF 327

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             M+    K   + Y  +I      G   +  +  D       + D  + NI  +AY   
Sbjct: 328 DSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKC 387

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
             ++ A   +N++   G+ P    +  L     K G+++     F + I
Sbjct: 388 GMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 436



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 112/254 (44%), Gaps = 3/254 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   L+  Y    ++ EAE + + M   G     + YN +L+ Y S  ++D    +
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCL 571

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E L+K  +P VVTYN  L           A++ +L +  +    D  +Y+ + +   K
Sbjct: 572 FREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCK 631

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A    + +  +  + N + ++ ++      G K++ + ++  + +     N   
Sbjct: 632 SNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVT 691

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  V  +L++ G  E+ ++++   E      + ++ N L+   ++R  +  A ++ ++L 
Sbjct: 692 YRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 751

Query: 377 TKGIKPCYTTWELL 390
            +      +T  LL
Sbjct: 752 ERNFSVEASTTSLL 765



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQM 197
           G  T + +LH   Q K+ +EA+ L   M   G  KC +  YN +LN    +  +D+  +M
Sbjct: 583 GVVTYNTILHGLFQTKRFSEAKELYLNMINSG-TKCDIYTYNIILNGLCKSNCVDEAFKM 641

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            Q L  K    +++T+ + + A      KE A   F  +    + P+ ++Y  +    I+
Sbjct: 642 FQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIE 701

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
               E+  +    MEK     N    ++L+
Sbjct: 702 EGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 40/367 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++  V +     AE + E M     +   + YN M+  Y   G+L K  +  +++
Sbjct: 222 TYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDM 281

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + KN  PD +TY   + AC S+ D +T    +LE+++  ++    SYS +     K    
Sbjct: 282 EMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKC 341

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
            +A    + M ++ CR N   Y++L+  Y+  G  +E +R++++M               
Sbjct: 342 MEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 401

Query: 306 -------------MSLF-------AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
                        M LF         +N   Y  +I  L K G  E AEN+++E      
Sbjct: 402 VNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGC 461

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N ++ A     +++ A + + R+  +G      T+ +L  G  K+ + E+ ++
Sbjct: 462 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIK 521

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
            + K I   +   V   R +      L   G +  A  +L  L   G +    +  ++ T
Sbjct: 522 FWDKMIDKGITPTVASFRALAIG---LCLCGKVARACKILDDLAPMGIIPETAFEDMINT 578

Query: 465 YAKAGKM 471
             KA ++
Sbjct: 579 LCKAQRI 585



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 13/317 (4%)

Query: 187 SNGQLDKVPQML---QELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           S G L  V ++L   + +K+N   P + TYN  +    +    E+AEK F  +   KI P
Sbjct: 194 SFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVP 253

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-SLYTNMGYKDEVLRI 301
           D ++Y+ +   Y K    +KA    ++ME +  + +++ Y +L+ + Y+   + D  L +
Sbjct: 254 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDF-DTCLSL 312

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           + +M     ++    Y+ VI  L K  +  +A  +++         +  +   L+ +Y  
Sbjct: 313 YLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSK 372

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
              +E A   + R+  +G +P   T+ +L  G  K G+++  +E F        K V  +
Sbjct: 373 NGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFC---RNKGVAIN 429

Query: 422 RLITAA-YNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVE 477
            +  A+  + L + G I+ AE+L   +   G    +  YN+++   AK GK+   L +  
Sbjct: 430 AMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFG 489

Query: 478 RMQKDNVQMDAETQKVL 494
           RM+++       T  +L
Sbjct: 490 RMEEEGCDQTVYTFTIL 506


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 1/245 (0%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A +L E+M + G     + YN +++ Y   G LD+   + +E+K     PDV+TYN  + 
Sbjct: 151 ARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALIN 210

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
           +         A + F E+K   + P+ ISYSTL     K  + + A     +M +     
Sbjct: 211 SFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLP 270

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N   YSSL+      G   E   +  +M+     +N   YT ++  L + G   +AE ++
Sbjct: 271 NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELF 330

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
                   T + +    L+  +I    ++ A   +N +  K IKP    W  + WG   +
Sbjct: 331 RAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSE 390

Query: 398 GQMEK 402
            ++E+
Sbjct: 391 SKLEE 395



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 3/303 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + LL    +     EAE L   M + G       Y  +++ +I    +DK  ++  E+
Sbjct: 309 TYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM 368

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K+  PD++ +   +    S++  E  +    E+K++ I  + + Y+TL   Y K    
Sbjct: 369 REKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNR 428

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L+EM         V + +L+      G   E +  + +M     + N A YT +
Sbjct: 429 TEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTAL 488

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L K      A+ ++DE +  +   D      ++   +     + A +  N+++  GI
Sbjct: 489 IDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGI 548

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +     +  L WG  + GQ+++  +   + IG  +  +PD  L T    K  E G+ID A
Sbjct: 549 ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIG--KGIIPDETLCTRLLRKHYELGNIDEA 606

Query: 441 EHL 443
             L
Sbjct: 607 IEL 609



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 135/331 (40%), Gaps = 4/331 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+A LH   +  +   +      M   G       YN M+      G +     + +++
Sbjct: 99  SCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQM 158

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           KK   +PD+VTYN  +         + +   F E+K    +PD I+Y+ L + + K +  
Sbjct: 159 KKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGM 218

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A    +EM+ +  + N ++YS+L+      G     ++ +  M  +    N+  Y+ +
Sbjct: 219 LRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSL 278

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  K G   +A  + DE        +      LL        +  AE  +  +   G+
Sbjct: 279 IDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGV 338

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    +  L  G++K   M+K +E F +     +   PD  L       L  +  ++  
Sbjct: 339 TPNLQAYTALIHGHIKVRSMDKAMELFNEM--REKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           + ++  ++ +G   +  IY +L+  Y KAG 
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGN 427



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 106/265 (40%), Gaps = 3/265 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K+R +  A   F  + +K   PD      ++       K  E + +M +M E G    P+
Sbjct: 354 KVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPV 413

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  +++ Y   G   +   +L+E++   T   VVT+   +     +   + A   F  +
Sbjct: 414 IYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRM 473

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P+   Y+ L     K      A     EM+ +    +++AY++++      G  
Sbjct: 474 PDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNF 533

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            E L +  KMM +  +++   YT ++  L + G+ ++A     E        D  +   L
Sbjct: 534 QEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRL 593

Query: 356 LAAYINRNQLEMAESFYNRLVTKGI 380
           L  +     ++ A    N LV KG+
Sbjct: 594 LRKHYELGNIDEAIELQNELVEKGL 618



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 125/298 (41%), Gaps = 8/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           ++ + ++ +  G L+   Q  L+  K    P   + N +L   +   + + +   F ++ 
Sbjct: 65  FDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMV 124

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              I P   +Y+ +     K      A +  ++M+K     + V Y++L+  Y  +G  D
Sbjct: 125 GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLD 184

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E + ++++M  +  + +   Y  +I+S  K     +A   + E +      +    + L+
Sbjct: 185 ESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLI 244

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
            A      ++MA  F+  +   G+ P   T+  L     K G +    E F  A   +++
Sbjct: 245 DALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLG---EAFMLADEMLQE 301

Query: 417 WVPDHRLI--TAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
            V D  ++  T   + L E+G ++ AE L   +  AG   + + Y +L+  + K   M
Sbjct: 302 HV-DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSM 358



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/426 (18%), Positives = 169/426 (39%), Gaps = 57/426 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + K   + +A + FE +      PD  T + L+  Y +     E+  L E+M 
Sbjct: 135 YNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMK 194

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G     + YN ++N +     + +  +  +E+K K+  P+V++Y+  + A   +   +
Sbjct: 195 FMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQ 254

Query: 227 TAEKAFLELKKT-----------------------------------KIDPDWISYSTLT 251
            A K F+++ +                                     +D + ++Y+TL 
Sbjct: 255 MAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLL 314

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               +  +  +A    + M K     N  AY++L+  +  +   D+ + ++ +M     K
Sbjct: 315 DGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIK 374

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAES 370
            +   +  ++  L    + E+ + I  E +  SG G +P +   L+ AY        A +
Sbjct: 375 PDILLWGTIVWGLCSESKLEECKIIMTEMKE-SGIGANPVIYTTLMDAYFKAGNRTEAIN 433

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL------I 424
               +   G +    T+  L  G  K+G +++ +  F +        +PDH L       
Sbjct: 434 LLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGR--------MPDHDLQPNVAVY 485

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQK 481
           TA  + L +   I  A+ L   +++   +  +I Y +++    K G     L +  +M +
Sbjct: 486 TALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMME 545

Query: 482 DNVQMD 487
             +++D
Sbjct: 546 MGIELD 551


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 163/389 (41%), Gaps = 4/389 (1%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           M     +G +   Y  N ++  L K  +Y+ A EV   M L+  +   S  Y   L    
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM-LRSGLSPDSTTYRSLLMEAC 351

Query: 119 KIRGLSSAENFFENLPDKMRGPD-TC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K   +   E  F ++  +   PD  C S+++  + ++    +A      + E G +   +
Sbjct: 352 KKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNV 411

Query: 177 PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++  Y   G +     +  E L++  + DVVTYN  L     +     A+K F E+
Sbjct: 412 IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM 471

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  + PD  + + L   + K+   + A    ++M+++  R + V Y++LL  +  +G  
Sbjct: 472 TERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDI 531

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           D    IW  M+S         Y+ ++++L   G   +A  ++DE  S +      + N +
Sbjct: 532 DTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSM 591

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  Y         ESF  +++++G  P   ++  L +G++++  M K     KK      
Sbjct: 592 IKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG 651

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
             VPD     +  +    Q  +  AE +L
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVL 680



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN----GQLDKVPQM 197
           T + +LH   + K   EA+ L  +M+E    +   P ++ L + I      G L    ++
Sbjct: 447 TYNTILHGLCKRKMLGEADKLFNEMTE----RALFPDSYTLTILIDGHCKLGNLQNAMEL 502

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT-SLYI 255
            Q++K K    DVVTYN  L       D +TA++ + ++   +I P  ISYS L  +L  
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           K  L E A     EM  +  +   +  +S++  Y   G   +     +KM+S     +  
Sbjct: 563 KGHLAE-AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 373
            Y  +I   V+     KA  +  + E   G   P V   N +L  +  +NQ++ AE    
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLR 681

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           +++ +G+ P  +T+  +  G++ +  + +      + +   R + PD + 
Sbjct: 682 KMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ--RGFSPDDKF 729



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/361 (17%), Positives = 137/361 (37%), Gaps = 35/361 (9%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN- 204
           L+ +YVQ +K  EA      +   GF       N ++   +  G ++    + QE+ ++ 
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG 230

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              +V T N+ + A       E       ++++  + PD ++Y+TL S Y    L E+A 
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAF 290

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             +  M  +        Y+++++     G  +    ++ +M+      +   Y  ++   
Sbjct: 291 ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 350

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G+  + E ++ +  S     D    + +++ +     L+ A  ++N +   G+ P  
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410

Query: 385 TTWELLTWGYLKKGQMEKVLE------------------------CFKKAIGSV------ 414
             + +L  GY +KG +   +                         C +K +G        
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470

Query: 415 ---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
              R   PD   +T   +   + G++  A  L   ++     +    YN+LL  + K G 
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530

Query: 471 M 471
           +
Sbjct: 531 I 531



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 9/236 (3%)

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSE 168
            + +D   K+  L +A   F+ + +K    D  T + LL  + +      A+ +   M  
Sbjct: 484 TILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 543

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA-CASQNDKE 226
              L  P+ Y+ ++N   S G L +  ++  E+  KN  P V+  N  +   C S N  +
Sbjct: 544 KEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD 603

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT--CRKNRVAYS 283
              ++FLE +      PD ISY+TL   +++ E   KA   +K+ME+       +   Y+
Sbjct: 604 G--ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYN 661

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           S+L  +       E   + +KM+      + + YTC+I+  V      +A  I+DE
Sbjct: 662 SILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDE 717



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 124 SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSE--CGFLKCPLPYN 179
           S  E+F E +  +   PD  S   L++ +V+ +  ++A  L++KM E   G +     YN
Sbjct: 602 SDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYN 661

Query: 180 HMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +L+ +    Q+ +   +L+++ ++  +PD  TY   +    SQ++   A +   E+ + 
Sbjct: 662 SILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721

Query: 239 KIDPD 243
              PD
Sbjct: 722 GFSPD 726


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 144/345 (41%), Gaps = 8/345 (2%)

Query: 130 FENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
           FE + D    PD  T   ++ S  Q  +  +A  +++K    GF      Y  +   +  
Sbjct: 148 FERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK 207

Query: 188 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
            G+L    ++ + +    SPD + YN  +     +ND + A +   E+ + K+ PD  +Y
Sbjct: 208 TGRLKDALEIFRNIP---SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTY 264

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L     K    +KA+  L EM  R    + V ++S++      G  +    +   M  
Sbjct: 265 NILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE 324

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              + +   Y  +IS L K    ++A+++ DE+ S     D    +IL      R +++ 
Sbjct: 325 RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 384

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A      +  KG  P   T+  L  G  K  + EK  E  +  + S   +VPD    T  
Sbjct: 385 AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS--GFVPDVVTYTII 442

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            + L ++G +D A  ++  +   G   + I Y +L+    + G++
Sbjct: 443 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 487



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 165/414 (39%), Gaps = 18/414 (4%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           + G+    Y  + +++ L ++ +   A  + +  +++   K     Y +      K   L
Sbjct: 153 DAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVR-GFKPEVSVYTILTRAFCKTGRL 211

Query: 124 SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A   F N+P     PD  +  A++H + +      A   +++M+E         YN +
Sbjct: 212 KDALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNIL 267

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++      + DK  +ML E+  +  +PD VT+N  +         E A      + +   
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P   +Y+TL S   K +  ++A   + E        + V YS L       G  DE   
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFE 387

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLA 357
           + K+M       N   Y  +I  L K  + EKA   Y+  ES+  +G   D     I++ 
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA---YELLESLVSSGFVPDVVTYTIIVD 444

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
                 +L+ A      ++ +G  P   T+  L  G  + G++++    FK+ +   +  
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS--KDC 502

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             D     +  N   +      A+ ++  +R   ++  ++YN+L+  Y K G++
Sbjct: 503 TADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYI--DVYNALMDGYCKEGRL 554



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 43/350 (12%)

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETA 228
           GF       N  L   + NG  D++P M +  L    +PD  TY+L + +    N     
Sbjct: 120 GFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQ---I 176

Query: 229 EKAFLELKKTKI----------------------------------DPDWISYSTLTSLY 254
           +KAF  L K K+                                   PD I+Y+ +   +
Sbjct: 177 DKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGH 236

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +    + A   LKEM +R    +   Y+ L+         D+   +  +M+      + 
Sbjct: 237 CRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDT 296

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             +  ++  L K G+FE+A ++       +        N L++    +  ++ A+   + 
Sbjct: 297 VTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDE 356

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
            V+ G  P   T+ +L  G  K+G++++  E  K+  G  +   P+        + L + 
Sbjct: 357 FVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSG--KGCTPNLVTYNTLIDGLCKA 414

Query: 435 GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQK 481
              + A  LL +L ++G V   + Y  ++    K G++   L +VE M K
Sbjct: 415 SKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK 464



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 146/345 (42%), Gaps = 14/345 (4%)

Query: 135 DKMRGP---DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           D +RG    D  +AL+  Y +  +  E   + E M+  G +     YN +++    +G++
Sbjct: 530 DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKV 589

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
           D+    L+ +      PDVV+YN+ +      +  + A +   ++ +  I PD ++Y+TL
Sbjct: 590 DEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + + K E  + A   LK M K     + V Y++L+S  +      +   +  +M+    
Sbjct: 650 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 311 KMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            ++    Y  +I  L K G  ++A  + D         +    NI +       +L+ A 
Sbjct: 710 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 769

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAA 427
           S  + + T   +  YTT   +  G  K  Q+++  +  ++ +      +  H   L+  A
Sbjct: 770 SLLSEMDTLRDEVSYTT---VIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDA 826

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           + K +    +D A  LL  +   G   + I YN ++    K  K+
Sbjct: 827 FTKTKR---LDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKV 868



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 13/272 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N I+  L K  + K A +V + M +Q  I   +  Y   +    K      A    +N+ 
Sbjct: 612 NIIIDGLFKASKPKEARQVLDQM-IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMI 670

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKM--SECGFLKCPLPYNHMLNLYISNGQ 190
                PD  T + L+    Q  +  +A  LM +M  + C    C   YN +++     G 
Sbjct: 671 KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT-TYNTIIDRLCKEGC 729

Query: 191 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           L +   ++  +  +    + VTYN+++     +   + A     E+   +   D +SY+T
Sbjct: 730 LKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSYTT 786

Query: 250 LTSLYIKMELPEKAATTLKEME--KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +     K E  ++A+   +EM   K  C  +   ++ L+  +T     DE L +   M+ 
Sbjct: 787 VIIGLCKAEQLDRASKLAREMVAVKGLCITSHT-FNLLIDAFTKTKRLDEALTLLGLMVQ 845

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                +   Y  VI+ L KL + +KA  ++DE
Sbjct: 846 RGCSPSVITYNMVITCLCKLDKVDKAWELFDE 877


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 189/444 (42%), Gaps = 26/444 (5%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           +  N I+  L + + +  AL V   M L+ ++      Y + +  + K      A   F+
Sbjct: 164 FAFNLILHFLVRKEAFLLALAVYNQM-LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFD 222

Query: 132 NLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            + D+   P+    S +L    Q KK  +A+ L  KM   G  +  + YN +LN +  +G
Sbjct: 223 EMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSG 282

Query: 190 QLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
            LD    +LQ L K+     V+ Y   +         E A   + ++ +  I PD + Y+
Sbjct: 283 YLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYT 342

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV--LRIWKKMM 306
            +     +     +A T L EM +R  R + + Y++L+  + +MGY DE   LR+     
Sbjct: 343 IMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
             F   N+  Y+ +I  + K G   KA++I+ E E +         N L+      N+LE
Sbjct: 403 DCFP--NNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 367 MAESFYNRL-----------VTKGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            A   + ++           +++G    +   + +++     + G + K  +   + + S
Sbjct: 461 EARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDS 520

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM- 471
               +PD R      N   + G+I+GA  L   ++  GH+   + Y +L+    +AG+  
Sbjct: 521 --GVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 472 -PLIIVERMQKDNVQMDAETQKVL 494
             L I E+M K     ++ T K +
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTI 602



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 155/387 (40%), Gaps = 20/387 (5%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ----YDIKLVSGDYAVH 113
           +++ W     TV    + ++++E        +A E+  W  LQ      IK+ S  ++V 
Sbjct: 84  SLKSWHLRCRTVQDLIIGKLIKE--------NAFEL-YWKVLQELKNSAIKISSEAFSVL 134

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++  S+      A   F  + D    PD    + +LH  V+ +    A A+  +M +C  
Sbjct: 135 IEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNL 194

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y  +++      +      +  E+  +   P+ + Y++ L+          A++
Sbjct: 195 NPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQR 254

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F +++ +  + D I+Y+ L + + K    + A T L+ + K       + Y  L++   
Sbjct: 255 LFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLF 314

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                +E    ++KM+    K +   YT +I  L + G   +A  +  E        D  
Sbjct: 315 RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTI 374

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N L+  + +   L+ AES    +      P   T+ +L  G  K G + K    FK+ 
Sbjct: 375 CYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEM 434

Query: 411 --IGSVRKWVPDHRLITAAY--NKLEE 433
             +G +   V  + LI      N+LEE
Sbjct: 435 EKLGCLPSVVTFNSLINGLCKANRLEE 461



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 50/128 (39%)

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           ++Q +     PD+ TYN+ +       +   A K F E++     PD ++Y TL     +
Sbjct: 514 LMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYR 573

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E A    ++M K+ C      Y ++++           L +W K +  F    D +
Sbjct: 574 AGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEK 633

Query: 317 YTCVISSL 324
              V  S 
Sbjct: 634 VRVVAESF 641


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 158/349 (45%), Gaps = 24/349 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDY------AVHLDLISKI 120
           + NR++  + KLK+Y   + + + ME+       Y   +V   +      ++ L ++ K+
Sbjct: 87  DFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKM 146

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             L      +E  PD++    T  +L++ + +  + ++A +L++KM E G+    + YN 
Sbjct: 147 LKLG-----YE--PDRV----TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++      +++      +E+ +K   P+VVTY   +    + +    A +   ++ K K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P+ I+YS L   ++K     +A    +EM + +   + V YSSL++        DE  
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +++  M+S     +   Y  +I+   K    E    ++ E        +    N L+  +
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
                ++ A+ F++++   GI P   T+ +L  G    G++EK L  F+
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 39/346 (11%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K  E G+       N I+  L K KR   A +  + +E +  I+     Y   ++ +   
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIE-RKGIRPNVVTYTALVNGLCNS 238

Query: 121 RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
              S A     ++  K   P+  T SALL ++V+N K  EA+ L E+M            
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM------------ 286

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
                                 ++ +  PD+VTY+  +      +  + A + F  +   
Sbjct: 287 ----------------------VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
               D +SY+TL + + K +  E      +EM +R    N V Y++L+  +   G  D+ 
Sbjct: 325 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384

Query: 299 LRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              + + M  F    D   Y  ++  L   GE EKA  I+++ +      D      ++ 
Sbjct: 385 QEFFSQ-MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                 ++E A S +  L  KG+KP   T+  +  G   KG + +V
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L++ + + K+  +   L  +MS+ G +   + YN ++  +   G +DK  +   ++  
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              SPD+ TYN+ L       + E A   F +++K ++D D ++Y+T+     K    E+
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           A +    +  +  + + V Y++++S     G   EV  ++ KM
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 149/365 (40%), Gaps = 47/365 (12%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           SAL+    ++   ++A  L  ++ E G L   + YN +++   S G+  +V Q+L ++ +
Sbjct: 199 SALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVR 258

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N  PD  T+N+ + A   +     A+     + K    PD ++Y+ L   Y   E   +
Sbjct: 259 ENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHE 318

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M KR    + + Y+ L+  Y      DE + ++K++ +       A Y  +I 
Sbjct: 319 ARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID 378

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA------------------------ 358
            L   G     + + DE    +   D    NIL+ A                        
Sbjct: 379 GLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438

Query: 359 -----------YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                      Y  RN + +A+  +NR+V  G++P    + +L  GY K   +++ +  F
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
           K+     +  +PD     A+YN L +     G I   + LL  + ++G     I YN LL
Sbjct: 499 KEM--RHKNLIPD----IASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552

Query: 463 RTYAK 467
             + K
Sbjct: 553 DAFCK 557



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 12/334 (3%)

Query: 120 IRGLSSAENFFE--NLPDKM--RG--PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           + G  S EN  E   L ++M  RG  PD  +   L+  Y + K   EA  L +++     
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEK 230
           +     YN +++   ++G++  V ++L E+  +  P DVVTYN+ + A   +     A  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             + + K  + P+ ++Y+ +   Y        A      M K     + + Y+ L++ Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                DE + ++K+M       + A Y  +I  L  LG     + + DE      + D  
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             NILL A+      + A S + R + +GI P + T   +     K  +++   +  K  
Sbjct: 547 TYNILLDAFCKTQPFDKAISLF-RQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHL 605

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           +  +    P+ +  T   N L + G    A  LL
Sbjct: 606 L--MHGCSPNVQTYTILINALCKDGSFGEAMLLL 637



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 149/400 (37%), Gaps = 82/400 (20%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           L  I ++    +A + F  L  K   P   T + L++ Y     +A A +L+  + + G+
Sbjct: 62  LGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGY 121

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
               + +N ++N +  NG + K     Q L                            + 
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNL--------------------------LAQG 155

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           +L         D  +Y TL +   K    + A   L+EMEK + + N V YS+L+     
Sbjct: 156 YLF--------DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCK 207

Query: 292 MGYKDEVLRI----------------------------WKKMMSLFAKM-------NDAE 316
            G+  + L +                            W+++  L  KM       +D  
Sbjct: 208 DGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I +L K G   +A+ +           D    N L+  Y +R  +  A   +NR+V
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV 327

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE--- 433
            +G++P    + +L  GY K   +++ +  FK+     +  VP      A+YN L +   
Sbjct: 328 KRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN--KNLVP----TIASYNSLIDGLC 381

Query: 434 -QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             G I   + LL  +  +      + YN L+    K G++
Sbjct: 382 NSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/344 (19%), Positives = 134/344 (38%), Gaps = 72/344 (20%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM 166
           +Y V +D   K + +  A   F+ L +K   P   S  +L+     + + +  + L+++M
Sbjct: 337 NYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 167 SECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
                    + YN +++     G+ L+ +  ++  +KK   P++VTYN  +     +N+ 
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT----------- 274
             A+  F  + K+ ++PD ++Y+ L + Y K E+ ++A    KEM  +            
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 275 ----CRKNRVAY-SSLLSLYTNMGYKDEVL------------RIWKKMMSLFAKM----- 312
               C   R+ +   LL    + G   +V+            + + K +SLF ++     
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIW 576

Query: 313 ------------------------------------NDAEYTCVISSLVKLGEFEKAENI 336
                                               N   YT +I++L K G F +A  +
Sbjct: 577 PDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLL 636

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
             + E      D     I++   + RN+ + AE     ++ +G+
Sbjct: 637 LSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEK 165
           G+Y   L  + K   +  A   F  L +    PDT   + +++  V++ +  EA  L++ 
Sbjct: 669 GNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDS 728

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M     L     Y  +L+    +G+L++   M  ++ ++   PDVV Y   +        
Sbjct: 729 MKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A   F  + K +  PD ++YS+L     K    E+A    +    + C  N   YSS
Sbjct: 789 LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+  +   G  D  L ++++M       N   Y  ++S L K G    AE + +E E + 
Sbjct: 849 LIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    NIL+        ++ AES++ R+  KGI P   T+  L       G+++K+L
Sbjct: 909 CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL---GKVDKLL 965

Query: 405 E 405
           E
Sbjct: 966 E 966



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 195/455 (42%), Gaps = 48/455 (10%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +V  L K  R + A EV   M+ + +    +  Y   +D + K      A   F+ + D+
Sbjct: 363 LVNGLAKAGRLEEACEVFVEMK-ENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDR 421

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+  T + ++    +  +  EA  L   + E G +     YN ++++    GQ+DKV
Sbjct: 422 GLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKV 481

Query: 195 PQMLQELKKNTSPDVV--------------------------------TYNLWLAACASQ 222
             +++E+ +     ++                                TYN  ++A    
Sbjct: 482 LAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHN 541

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
              + A K    +KK +  P  ++Y+TL     K    ++A + L+EMEK+ C  + V Y
Sbjct: 542 GHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTY 601

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           SSL++ +     ++E L ++ +M+      + + Y+ VI+ L K  + ++A +++   + 
Sbjct: 602 SSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKE 661

Query: 343 ISGTGDPRVPN--ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
             G  +P + N   LL++ +   +++ A   +N L    + P    + ++  G +K  ++
Sbjct: 662 -EGM-EPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRV 719

Query: 401 EKVLECFKKAIGSVRKW--VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI- 457
           ++      K + S++    +PD    T+  + L + G ++ A ++   +   GH    + 
Sbjct: 720 DEAC----KLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVA 775

Query: 458 YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           Y SL+    K GK+   LII   M K     D  T
Sbjct: 776 YTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVT 810



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 172/415 (41%), Gaps = 22/415 (5%)

Query: 62  WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
           WKE GH +  + L  ++R          ALE+   M+  +     +  Y   L+L+ K  
Sbjct: 209 WKE-GHRISMHLLTSLLRTFGSTNNVSGALEIFNQMK-SFGCNPSTNMYNFVLELLVKGG 266

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
              SA   F  L      PD  T    +HS+ ++ +   A   +++M + G       + 
Sbjct: 267 FYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFT 326

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +++  + +G +D+  +    +K    SP+VVTY   +   A     E A + F+E+K+ 
Sbjct: 327 VLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKEN 386

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              PD I+Y+TL     K    + A    KEM+ R    N   Y+ ++S+    G + E 
Sbjct: 387 NCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEA 446

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            +++  +    A  +   Y  +I  L K G+ +K   I  E   +   G+  +     A 
Sbjct: 447 WQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM--VEKGGECIISRDSNAG 504

Query: 359 YINRNQLEMAESF--YNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLECFKKAIGS 413
           +     +E A+    Y  L  K +     T+  L   ++  G ++   K+LE  KK    
Sbjct: 505 H--EGTIEGADRTVEYPSLGFKSLGE--ITYNTLMSAFIHNGHVDEAVKLLEVMKK---- 556

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
             + +P     T   + L + G +D A  LL  +   G   S   Y+SL+ ++ K
Sbjct: 557 -HECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYK 610



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 160/393 (40%), Gaps = 76/393 (19%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN +++ +I NG +D+  ++L+ +KK+   P VVTY   +         + A     E
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++K   +P  ++YS+L + + K +  E++ +   EM ++ C  +   YS +++       
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+ L ++ +M     +     Y  ++SSLVK  + + A  I++E +  S   D  V NI
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 355 LLAAYI----------------NRN-------------------QLEMAESFYNRLVTKG 379
           ++   +                N+N                   +LE A + + ++  +G
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            +P    +  L     K G++   L  F+    + ++ VPD    ++  + L ++G ++ 
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAM--AKKRCVPDVVTYSSLIDSLGKEGRVEE 826

Query: 440 AEHLLVT------LRNAGHVSTEI------------------------------YNSLLR 463
           A +            N G  S+ I                              YN+LL 
Sbjct: 827 AYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLS 886

Query: 464 TYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
             AKAG++ +   ++E M+K     D  T  +L
Sbjct: 887 GLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL 919



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 136/333 (40%), Gaps = 14/333 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           ++LL ++      + A  +  +M   G       YN +L L +  G       +  +L +
Sbjct: 221 TSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQ 280

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               PD  T+ +++ +       + A +   E+ K+ IDP   +++ L    +K    ++
Sbjct: 281 FRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDE 340

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M+   C  N V Y++L++     G  +E   ++ +M       +   Y  +I 
Sbjct: 341 ACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLID 400

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L K GE + A  ++ E +      + R  NI+++      +   A   ++ L  +G  P
Sbjct: 401 GLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVP 460

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L     K GQM+KVL   K+ +            I +  +    +G I+GA+ 
Sbjct: 461 DVFTYNTLIDVLGKGGQMDKVLAIIKEMVEK------GGECIISRDSNAGHEGTIEGADR 514

Query: 443 LL----VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            +    +  ++ G ++   YN+L+  +   G +
Sbjct: 515 TVEYPSLGFKSLGEIT---YNTLMSAFIHNGHV 544



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 159/356 (44%), Gaps = 6/356 (1%)

Query: 130 FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
           + +L  K  G  T + L+ +++ N    EA  L+E M +   +   + Y  +++     G
Sbjct: 518 YPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAG 577

Query: 190 QLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           +LD+   +L+E+ K+   P VVTY+  +A+   ++ +E +   F E+ +     D  +YS
Sbjct: 578 RLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYS 637

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            + +   K +  ++A      M++         Y +LLS        D  L+I+ ++   
Sbjct: 638 LVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQES 697

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               +   Y  +++ LVK    ++A  + D  ++ +   D      LL       +LE A
Sbjct: 698 SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEA 757

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
            + + ++  +G +P    +  L     K G++   L  F+    + ++ VPD    ++  
Sbjct: 758 FNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM--AKKRCVPDVVTYSSLI 815

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQK 481
           + L ++G ++ A +      + G   +  +Y+SL+ ++ K G +   L + E MQ+
Sbjct: 816 DSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQR 871



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 141/326 (43%), Gaps = 9/326 (2%)

Query: 75   NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
            N +V  L K  R   A ++ + M+ Q +I      Y   LD + K   L  A N F  + 
Sbjct: 707  NIMVNGLVKSNRVDEACKLVDSMKNQ-NILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMT 765

Query: 135  DKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
            ++   PD    ++L+    +  K + A  +   M++   +   + Y+ +++     G+++
Sbjct: 766  EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825

Query: 193  KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            +     +  + K  +P+V  Y+  + +   +   + A + F E+++ +  P+ ++Y+ L 
Sbjct: 826  EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885

Query: 252  SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            S   K      A   L+EMEK  C  + V Y+ L+     MG  DE    +K+M      
Sbjct: 886  SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV 945

Query: 312  MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
             +   +T +I SL K+ +  +A  ++D  E           N+L+       ++  A   
Sbjct: 946  PDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMI 1005

Query: 372  YNRLVTKGIKPCYTTWELLTWGYLKK 397
            ++ +  KG  P     + +T G +K+
Sbjct: 1006 FHEMKVKGCMP-----DGITIGIMKR 1026


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 137 MRGPDTCSALLHSYVQNKKSAE-AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           M G  + +A+L + ++ K+S + AE + ++M E G       YN ++  + + G L+   
Sbjct: 164 MPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGL 223

Query: 196 QMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
               E+++N   P+VVTYN  + A         A K    +    ++P+ ISY+ + +  
Sbjct: 224 XFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +    ++ +  L+EM KR    +RV +++L++ Y N+G   + L +  +M+      N 
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +I+S+ K G   +A    D+        + R    L+  +  +  L+ A      
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKE 403

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +V  G  P   T+  L  G+   G+ME      ++ I   R ++PD
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE--RGFIPD 447



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 179/423 (42%), Gaps = 10/423 (2%)

Query: 47  SLVYAKRSAAIT---MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
           +++  K+S  I     ++  E G + + Y  N ++R        +  L     ME    +
Sbjct: 176 AVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCL 235

Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEA 161
             V   Y   +D   K+R +  A      +  K   P+  S   +++   +  +  E   
Sbjct: 236 PNVV-TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSE 294

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACA 220
           ++E+MS+  ++   + +N ++N Y + G   +   +  E+ KN  SP+VVTY   + +  
Sbjct: 295 ILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMC 354

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
              +   A +   +++   + P+  +Y+TL   + +    ++A   +KEM +       +
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++L++ +  +G  ++   + ++M+      +   Y+ +IS   +  E EKA  +  E 
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEM 474

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
            +   + D    + L+     + +L      +  +++ G+ P   T+  L   Y  +G +
Sbjct: 475 VAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDL 534

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
           +K L    + I   + + PD        N   +Q     A+ LL+ L     V  EI YN
Sbjct: 535 DKALRLHDEMIQ--KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYN 592

Query: 460 SLL 462
           +L+
Sbjct: 593 TLI 595



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 143/336 (42%), Gaps = 24/336 (7%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL++ +    +  +A  L+++M E GF+   + Y+ +++ +  N +L+K  Q+  E+
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEM 474

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  SPDV TY+  +     Q         F E+    + PD ++Y++L + Y      
Sbjct: 475 VAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDL 534

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA     EM ++    + V Y+ L++ +       E  R+  K++   +  N+  Y  +
Sbjct: 535 DKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +   L EF+ A                     L+  +  +  +  A+     ++ KG 
Sbjct: 595 IDNCNNL-EFKSAL-------------------ALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDG 439
           K     + ++  G+ K G +EK    +K+ + S   + P    I A    L  +G +++ 
Sbjct: 635 KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHS--GFAPHSVTIMALAKSLYHEGKEVEL 692

Query: 440 AEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLII 475
            + L  TL++       +   L+   +K G M  + 
Sbjct: 693 NQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVF 728


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 167/408 (40%), Gaps = 49/408 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPD-KMRGPD--TCSALLHSYV-QNKKSAEAEALMEK 165
           Y V ++ + K R  S A    + + D K   PD  T S +++ +  Q +     E L E 
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQND 224
           ++  G     + Y  +++    +G++D+  +M++E+K K   PD  T++  +    +   
Sbjct: 72  VTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK 131

Query: 225 KETAEKAFLEL--KKTKID------------------------------------PDWIS 246
            + A K + E+     ++D                                    PD ++
Sbjct: 132 VDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+ L   + K    EKA   L  ME R C  N V YSSLL      G  D+ L ++++M 
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
           S     N   YT +I  L    + + A  + DE  +     D    N LL  Y    ++E
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIE 311

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVPDHRL 423
            A+  +  +  K   P   T+  L  G+    ++E+   +LE  K A G +   V  + +
Sbjct: 312 EAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAG-IDPDVVTYSI 370

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           + A Y++ +    ++ AE +   +      +   Y+SL+    KAG++
Sbjct: 371 VVAGYSRAKRF--VEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 416



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 34/385 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  L  + K   L  A + F  +  K   P+  T + L+H      K   A  LM++M+
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 168 ECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQN 223
                 CP   + YN +L+ Y   G++++  Q+ +E+  K+  PD +TY   +    + +
Sbjct: 287 A---TCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNAS 343

Query: 224 DKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
             E A +  LE  KT   IDPD ++YS + + Y + +   +AA  ++EM  R    N V 
Sbjct: 344 RLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           YSSL+      G  +  + + K +     K +   YT VI  L      E+A  + +E  
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNV----DKPDVVTYTIVIEGLCGTDRTEEALTLLEEM- 457

Query: 342 SISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            ++   +P V   N ++ A      ++ A      +   G++P   T+  L  G+ + G+
Sbjct: 458 -VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516

Query: 400 MEKVLECFK------KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN---- 449
           ME   E F+      K   S    VP+    +A    L +  +ID A  ++  LR+    
Sbjct: 517 MEIAYELFEVMRRKAKKSSSAANLVPEQAF-SALIRGLCKAREIDKAMAVVEELRSRECE 575

Query: 450 -AGHVSTEIYNSLLRT--YAKAGKM 471
            A      I + LLR     +AGK+
Sbjct: 576 PAEEDCLAIVDGLLRAGRTEEAGKL 600


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 133/284 (46%), Gaps = 13/284 (4%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T ++L+ S  ++ K  +A  + + M+  G       Y  MLN Y + G L 
Sbjct: 318 LPDVV----TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLV 373

Query: 193 KVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
            + ++    L    +PD   +N+ + A A     + A   F E+++  ++PD ++YST+ 
Sbjct: 374 DLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVI 433

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG----YKDEVLRIWKKMMS 307
           +   ++   + A     +M  +    +   Y  L+  +   G     KD VL++  K M 
Sbjct: 434 AALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGM- 492

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              + +   +  +I++L KLG    A+NI+D   SI    +  V N L+  Y    ++E 
Sbjct: 493 ---RPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMEN 549

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           A   ++ +V+ GI+P    +  L  GY K G++++ L  F++ +
Sbjct: 550 ALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREIL 593



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 163/405 (40%), Gaps = 46/405 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEA-EALMEKM 166
           Y + +D  ++         FF  +     G DT   S LL    + K++AEA + L+ +M
Sbjct: 111 YGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRM 170

Query: 167 SECGFLKCPLPYNHMLNLYISN---GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
              G +     Y  +L    S+   GQ D++ +M+ E      P+ V YN  +     + 
Sbjct: 171 PHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEG 230

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           D   A   F E+ +  I PD  +Y+ + +   K    +KA   L++M  +    +   Y+
Sbjct: 231 DVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYN 290

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE-- 341
           SL+  Y++ G   E +R+ KKM S     +      +++SL K G+ + A +++D     
Sbjct: 291 SLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMK 350

Query: 342 ---------------------------------SISGTGDPRVPNILLAAYINRNQLEMA 368
                                            S     D  + N+L+ AY     L+ A
Sbjct: 351 GQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRA 410

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAA 427
              +N +  +G++P   T+  +     + G+M+  +E F + I   V   +  +  +   
Sbjct: 411 TIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQG 470

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           +      GD+  A+ L++ + N G       +N ++    K G++
Sbjct: 471 FCT---HGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRV 512



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 167/406 (41%), Gaps = 62/406 (15%)

Query: 120 IRGLSSAENFFENL-------PDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECG 170
           +RGL  A+   E L       P     PD  S   +L S   ++KS +A+ L+  M+E G
Sbjct: 150 LRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGG 209

Query: 171 FLKCP--LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKET 227
            +  P  + YN +++ +   G ++K   +  E+ ++  SPD+ TYN  + A       + 
Sbjct: 210 AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDK 269

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYI-------------KME----LPEKAATTLKEM 270
           AE    ++    + PD  +Y++L   Y              KM     LP+    TL  +
Sbjct: 270 AEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPD--VVTLNSL 327

Query: 271 EKRTCRKNRV--------------------AYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
               C+  ++                    +Y  +L+ Y   G   ++  ++  M+S   
Sbjct: 328 MASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGI 387

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
             +   +  +I +  K G  ++A  I++E        D    + ++AA     +++ A  
Sbjct: 388 APDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVE 447

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITA 426
            +N+++ +G+ P  +T+  L  G+   G + K    VL+   K +       PD      
Sbjct: 448 KFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMR------PDIGCFNF 501

Query: 427 AYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             N L + G +  A+++   T+    H +  +YN+L+  Y   GKM
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM 547



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 140/346 (40%), Gaps = 7/346 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A   F  + ++   PD  T S ++ +  +  K  +A     +M + G       Y+ 
Sbjct: 407 LDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 181 MLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  + ++G L K   + LQ + K   PD+  +N  +           A+  F       
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + P+ + Y+TL   Y  +   E A      M     + N V Y +L++ Y  +G  DE L
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGL 586

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            ++++++    K +   Y  ++  L + G    A+  + E        D    +I+L   
Sbjct: 587 SLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGL 646

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
              +  + A   +  L    +K   TT  ++  G  +  ++E+  + F     S    VP
Sbjct: 647 FKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASI--SRSGLVP 704

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG--HVSTEIYNSLLR 463
                +     L ++G ++ A+ +  ++ NAG    ++++ N ++R
Sbjct: 705 SVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHVVR 750


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 137/306 (44%), Gaps = 8/306 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  + +A   F  +  +   P+  T S+L++  +Q++K  +A AL+ KM 
Sbjct: 372 YTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQ 431

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYN-LWLAACASQNDK 225
           E G     + Y  ++       + D   ++ + +++N  +PD   YN L  A C S    
Sbjct: 432 EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGR-- 489

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             AE+A+  L +  +    ++Y++L   + K    + AA  +++M    C+ +   YS L
Sbjct: 490 --AEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVL 547

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L         +E L I  +M     K N   YT +IS ++K G+ + A+++++E  S   
Sbjct: 548 LQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGH 607

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                   + +++Y    Q+E AE     +   G+ P   T+ +   G    G M++   
Sbjct: 608 KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFS 667

Query: 406 CFKKAI 411
             K+ I
Sbjct: 668 TLKRMI 673



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 150/366 (40%), Gaps = 19/366 (5%)

Query: 141 DTCSALLHSY-------VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           D CS  LH+Y        +  +   A  ++E+M   G +     YN M++ Y  +G++  
Sbjct: 189 DGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 248

Query: 194 VPQMLQELKKN-TSPDVVTYNLWL-AACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              +   +++N  +PD  TYN+ +   C  + D+  AE+   +       P  I+++ + 
Sbjct: 249 ALGIKALMERNGCNPDDWTYNILIYGLCGEKPDE--AEELLNDAIVRGFTPTVITFTNII 306

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + Y K E  + A      M    C+ +  AY  L+++        E      +M +    
Sbjct: 307 NGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLA 366

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   YT +I    K+G+   A  ++   E      +    + L+   I   +L  A + 
Sbjct: 367 PNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMAL 426

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
             ++   GI P   T+  L  G  KK + +     F+  +       PD +      + L
Sbjct: 427 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE--MMEQNGLTPDEQAYNVLTHAL 484

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPL--IIVERMQKDNVQMDA 488
            + G  + A   LV     G V T++ Y SL+  ++KAG      +++E+M  +  + D+
Sbjct: 485 CKSGRAEEAYSFLV---RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADS 541

Query: 489 ETQKVL 494
            T  VL
Sbjct: 542 YTYSVL 547



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/411 (17%), Positives = 151/411 (36%), Gaps = 64/411 (15%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           AA+ + K   EG     Y  + +++ L K K+   AL + + M L            V  
Sbjct: 525 AAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLS----------GVKC 574

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           ++++                         + ++   ++  K   A+++  +M   G    
Sbjct: 575 NIVAY------------------------TIIISEMIKEGKHDHAKSMFNEMISSGHKPS 610

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
              Y   ++ Y   GQ+++   ++ E++++  +PDVVTYN+++  C      + A     
Sbjct: 611 ATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLK 670

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +     +P++ +Y  L   ++KM L +        M                    N  
Sbjct: 671 RMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGM-------------------WNWI 711

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D V ++ ++M+          Y+ +I+   K    E+A  ++D       + +  +  
Sbjct: 712 ELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYT 771

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L+    +      A SF   ++  G +P   ++  L  G   +G  +K    F   +G 
Sbjct: 772 MLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLG- 830

Query: 414 VRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRN-AGHVSTEIYN 459
               + D+     A+  L +     G +D    LL  + N    + +E Y+
Sbjct: 831 ----MEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYS 877



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 145/394 (36%), Gaps = 71/394 (18%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+  + +   +  A  L+EKM   G       Y+ +L       +L++   +L ++
Sbjct: 508 TYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQM 567

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                  ++V Y + ++    +   + A+  F E+  +   P   +Y+   S Y K+   
Sbjct: 568 TLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQI 627

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   + EME+     + V Y+  ++   +MGY D      K+M+    + N   Y   
Sbjct: 628 EEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTY--- 684

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
               + L  F K   +   +   SG               N  +L+       R+V  G+
Sbjct: 685 ---WILLKHFLKMSLVDAHYVDTSGMW-------------NWIELDTVWQLLERMVKHGL 728

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFK------------------------KAIGSVRK 416
            P   T+  +  G+ K  ++E+    F                         K  G    
Sbjct: 729 NPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVS 788

Query: 417 WVPD-------------HRLITAAYNKLEEQGDIDGAEHLLVTL-----RNAGHVSTEIY 458
           +V D             H LI      L ++GD D A+ L   L      N   V+ +I 
Sbjct: 789 FVTDMIEFGFQPHLESYHYLIVG----LCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKIL 844

Query: 459 NSLLRTYAKAGKMPLI--IVERMQKDNVQMDAET 490
           N  L    KAG +     ++  M+  + Q+D+ET
Sbjct: 845 NDGL---LKAGHVDFCSQLLSAMENRHCQIDSET 875



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/331 (18%), Positives = 132/331 (39%), Gaps = 9/331 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
             L++  ++  +  EA+  + +M   G     + Y  +++ Y   G++    ++ + ++ 
Sbjct: 338 GVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEH 397

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P+  TY+  +           A     ++++  I P  I+Y+TL     K    + 
Sbjct: 398 EGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN 457

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + ME+     +  AY+ L       G  +E      +   +  K+    YT ++ 
Sbjct: 458 AFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVT---YTSLVD 514

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  + A  + ++  +     D    ++LL A   + +L  A S  +++   G+K 
Sbjct: 515 GFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKC 574

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               + ++    +K+G+ +     F + I S  K  P     T   +   + G I+ AEH
Sbjct: 575 NIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHK--PSATTYTVFISSYCKIGQIEEAEH 632

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           L+  +   G V+ ++  YN  +      G M
Sbjct: 633 LIGEMERDG-VAPDVVTYNVFINGCGHMGYM 662


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 141/329 (42%), Gaps = 18/329 (5%)

Query: 86  RYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENF--FENLPDKMR---- 138
           + K A E   +ME L +   +VS +  +H        G SS  N      + D MR    
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIH--------GYSSRGNIEGARRILDAMRVKGI 239

Query: 139 GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
            PD  T  +L+    +  +  EA  L +KM E G +   + YN +++ Y + G L++   
Sbjct: 240 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 299

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
              E+ KK   P V TYNL + A   +     A+    E++K  I PD I+Y+ L + Y 
Sbjct: 300 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 359

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +    ++A     EM  +      V Y+SL+ + +      E   +++K++      +  
Sbjct: 360 RCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVI 419

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  +I      G  E+A  +  E +  S   D    N L+       ++E A    + +
Sbjct: 420 MFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
             +GIKP + ++  L  GY ++G ++   
Sbjct: 480 KXRGIKPDHISYNTLISGYGRRGDIKDAF 508



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 118/265 (44%), Gaps = 4/265 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+H+     +  EA+ ++++M + G +   + YN ++N Y   G   +   +  E 
Sbjct: 315 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEM 374

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P  VTY   +   + +N  + A+  F ++    + PD I ++ +   +      
Sbjct: 375 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNV 434

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   LKEM++++   + V +++L+      G  +E   +  +M     K +   Y  +
Sbjct: 435 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTL 494

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS   + G+ + A  + DE  SI         N L+       + ++AE     +V KGI
Sbjct: 495 ISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGI 554

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P  +T+  L  G    G ++ ++E
Sbjct: 555 SPDDSTYLSLIEGM---GNVDTLVE 576



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 127/273 (46%), Gaps = 17/273 (6%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P+VV+YN  +   +S+ + E A +    ++   I+PD  +Y +L S   K    E+A+  
Sbjct: 206 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 265

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMG-------YKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +M +     N V Y++L+  Y N G       Y+DE+++  K +M   +      Y  
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK--KGIMPSVST-----YNL 318

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++ +L   G   +A+++  E        D    NIL+  Y      + A   +N +++KG
Sbjct: 319 LVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG 378

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I+P + T+  L +   ++ +M++  + F+K +   +   PD  +  A  +     G+++ 
Sbjct: 379 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD--QGVSPDVIMFNAMIDGHCANGNVER 436

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           A  LL  +        E+ +N+L++   + GK+
Sbjct: 437 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKV 469



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA   +  ME    + N V+Y++++  Y++ G  +   RI   M     + +   Y  +
Sbjct: 190 KKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSL 249

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS + K G  E+A  ++D+   I    +    N L+  Y N+  LE A S+ + +V KGI
Sbjct: 250 ISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGI 309

Query: 381 KPCYTTWELLTWGYLKKGQM----EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            P  +T+ LL      +G+M    + + E  KK I      +PD        N     G+
Sbjct: 310 MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI------IPDAITYNILINGYSRCGN 363

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
              A  L   + + G   T + Y SL+   ++  +M
Sbjct: 364 AKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 399



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA-- 410
           N ++  Y +R  +E A    + +  KGI+P   T+  L  G  K+G++E+    F K   
Sbjct: 212 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 271

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           IG V   V  + LI    NK    GD++ A      +   G + S   YN L+      G
Sbjct: 272 IGLVPNAVTYNTLIDGYCNK----GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEG 327

Query: 470 KMPLI--IVERMQKDNVQMDAETQKVL 494
           +M     +++ M+K  +  DA T  +L
Sbjct: 328 RMGEADDMIKEMRKKGIIPDAITYNIL 354


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 138 RG-PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQL 191
           RG PD  S   LL+      +S EA  L+  M++ G   CP   + Y+ ++N +   G L
Sbjct: 46  RGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGG-DCPPDVVSYSTVINGFFKEGDL 104

Query: 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           DK+      L +  SP+VVTYN  +AA       + A +    + K+ + PD ++Y+++ 
Sbjct: 105 DKM------LDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +     P++A   LK+M       + V Y+SL+      G   E  +I+  M     K
Sbjct: 159 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 218

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  ++      G   +   + D         +  V +IL+ AY  + ++E A   
Sbjct: 219 PDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLV 278

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           ++++  +G+ P   T+  +     K G++E  +  F++ I    +  PD  +  +  + L
Sbjct: 279 FSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR--PDSIVYNSLIHSL 336

Query: 432 EEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
                 + AE L + + + G  +ST  +NS++ ++ K G++
Sbjct: 337 CIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRV 377



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 115/262 (43%), Gaps = 10/262 (3%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD M    T ++++H +  + +  EA   ++KM   G     + YN +++    NG+  
Sbjct: 148 MPDCM----TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 203

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + K+   PD+ TY   L   A++            + +  I P+   +S L 
Sbjct: 204 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 263

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K E  E+A     +M ++    N V Y +++ +    G  ++ +  +++M+    +
Sbjct: 264 CAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR 323

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  +I SL    ++EKAE ++ E             N ++ ++    ++  +   
Sbjct: 324 PDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKL 383

Query: 372 YNRLVTKGIKPCYTTWELLTWG 393
           ++ +V  G+KP     +++T G
Sbjct: 384 FDLMVRIGVKP-----DIITLG 400



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 30/244 (12%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAACASQNDKETA--------------------------- 228
            +  EL +   PDV +YN+ L     +N  + A                           
Sbjct: 38  HVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 229 ---EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
              E    ++   +I P+ ++Y+++ +   K +  +KA   L  M K     + + Y+S+
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + + G   E +   KKM S   + +   Y  ++  L K G   +A  I+D       
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D      LL  Y  +  L       + +V  GI P +  + +L   Y K+ ++E+ + 
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 406 CFKK 409
            F K
Sbjct: 278 VFSK 281


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 9/355 (2%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            +++SYVQ++    + +   +M + GF+     +N++L   + +   ++      E K  
Sbjct: 99  VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSK 158

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              DV ++ + +  C    + E +    +EL +    P+ + Y+TL     K    EKA 
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM K     N   Y+ L++     G K +   +++KM       N   Y CV++ L
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A  ++DE      + +    N L+       +L  A    +++ + GI P  
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338

Query: 385 TTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
            T+  L  G+   G++ K L   +  K+ G     V  + L++    K    GD  GA  
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRK----GDTSGAAK 394

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDNVQM--DAETQKVL 494
           ++  +   G   +++ Y  L+ T+A++  M   I  R+  + + +  D  T  VL
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 118/269 (43%), Gaps = 1/269 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++   +N    +   + EKM E G       YN ++N    +G+     Q+  E+
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  S ++VTYN  +     +     A K   ++K   I+P+ I+Y+TL   +  +   
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA +  ++++ R    + V Y+ L+S +   G      ++ K+M     K +   YT +
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  +    EKA  +    E +    D    ++L+  +  + Q+  A   +  +V K  
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC 474

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +P    +  +  GY K+G   + L+  K+
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALKLLKE 503



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 11/256 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +  K  EA  ++++M   G     + YN +++ +   G+L K   + ++L
Sbjct: 305 TYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  SP +VTYN+ ++    + D   A K   E+++  I P  ++Y+ L   + + +  
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA      ME+     +   YS L+  +   G  +E  R++K M+    + N+  Y  +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I    K G   +A  +  E E          PN+     ++       + + AE    ++
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEE-----KELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539

Query: 376 VTKGIKPCYTTWELLT 391
           +  GI P  +   L++
Sbjct: 540 IDSGIDPSTSILSLIS 555


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 6/352 (1%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           LIS  R    A   F  +      P+T +  AL++  ++N +   A  +   M + G L 
Sbjct: 374 LISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLP 433

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
               YN ++  Y + G  +K   ML   LK   +P +VTYN+ +       D + A +  
Sbjct: 434 NTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVL 493

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +K     PD  SY+ L S + K+   E A+    EM  R    N V Y++L+S Y   
Sbjct: 494 ELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKD 553

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              D   R+ ++M     + N   Y  +I  L K   F  AE +         + D    
Sbjct: 554 EKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTY 613

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           + ++    N   + +A   +N++V  G  P   T+  L     ++G++E+  E F +   
Sbjct: 614 STVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSEL-- 671

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLR 463
             +  +PD              G +D A   L  + NAG   T + Y+ L++
Sbjct: 672 KKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIK 723



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 133/315 (42%), Gaps = 4/315 (1%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA 217
           A  L  +MS  G +   + YN ++N+ + N ++D    +   + K+   P+  +YN  + 
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              +  D E A      + K +  P  ++Y+ +   Y      + A   L+ M+   C+ 
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQP 503

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           +  +Y+ L+S +  +   +    ++ +MM      N+  YT +IS   K  + + A  + 
Sbjct: 504 DEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARML 563

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +  +      + +  N+L+     +N    AE     ++ + I P   T+  +  G    
Sbjct: 564 ERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNN 623

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G +   LE F K +      +P+    ++    L ++G ++ AE +   L+  G +  E+
Sbjct: 624 GAIPLALEMFNKMVK--HGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEV 681

Query: 458 -YNSLLRTYAKAGKM 471
            Y  ++     +GK+
Sbjct: 682 TYVKMIEVCVMSGKV 696



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 127/327 (38%), Gaps = 46/327 (14%)

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           L +++  +D+  Q+L+E      P+++ YN  + A     +   AE    ++ K+ + PD
Sbjct: 206 LNMTSTVMDRYHQILRE---GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPD 262

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
             +Y+++   Y +    + A      M++  C  N   YS+L++   N G  +E L    
Sbjct: 263 TFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFIS 322

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKA-------------ENIYDEWESISG----- 345
           +M           +T  I +L  +G  E A              N+Y     ISG     
Sbjct: 323 EMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSR 382

Query: 346 ---------TGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
                    + D  VPN      L+   +   +++ A   +N +   G  P  +++  L 
Sbjct: 383 MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTL 447
            GY   G  EK +      +    K  P   L+T  YN +     + GD D A  +L  +
Sbjct: 443 RGYCTIGDTEKAMSMLTNML----KGRPTPTLVT--YNIIIKGYCDSGDTDVAIRVLELM 496

Query: 448 RNAGHVSTE-IYNSLLRTYAKAGKMPL 473
           +  G    E  Y  L+  + K  KM L
Sbjct: 497 KANGCQPDEWSYTELISGFCKISKMEL 523



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 12/234 (5%)

Query: 94  CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYV 151
           C+  E  Y  +L+SG          KI  +  A   F  + D+   P+  T +AL+  Y 
Sbjct: 501 CQPDEWSY-TELISG--------FCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYC 551

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVV 210
           +++K   A  ++E+M   G       YN +++            ++ +  L++  SPDVV
Sbjct: 552 KDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV 611

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY+  +    +      A + F ++ K    P+  +YS+L     +    E+A     E+
Sbjct: 612 TYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSEL 671

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
           +K+    + V Y  ++ +    G  D       +M++   +     Y  +I  L
Sbjct: 672 KKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 154/347 (44%), Gaps = 26/347 (7%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A+   + + ++   P+  T SAL+++YV+ +K  EAE L ++M   G +   + YN M
Sbjct: 301 SEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSM 360

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++ +    +LD    M   +  K  SPDV T+N  +         +   +   E+ +T +
Sbjct: 361 IDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGL 420

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             D  +Y+TL   +  +     A    ++M       + V  ++LL    + G   + L 
Sbjct: 421 VADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 480

Query: 301 IWKKM----MSLFAK--MNDAE-----YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           ++K M    M L A    N  E     Y  +IS L+  G+F +AE +Y E          
Sbjct: 481 MFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRG----- 535

Query: 350 RVPN-ILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            VPN I  ++ IN    +++L+ A   ++ + +K   P   T+  L  GY K G+++  L
Sbjct: 536 IVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGL 595

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           E F +     R  V D        +   + G+I+GA  +   + ++G
Sbjct: 596 ELFCEM--GRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 162/378 (42%), Gaps = 18/378 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTC--SALLHSYVQNKKSAEAEALMEKM 166
           Y   +D + KI    SA N    + +     P+    SA++    ++ + ++A  L  +M
Sbjct: 216 YGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEM 275

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDK 225
            E G       YN M++ + S+G+  +  ++LQE L++  +P+VVTY+  + A   +   
Sbjct: 276 QEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKF 335

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             AE+ + E+    I P+ I+Y+++   + K    + A      M  + C  +   +++L
Sbjct: 336 FEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTL 395

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  Y      D+   +  +M       +   Y  +I     +G+   A ++  +  S   
Sbjct: 396 IDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV 455

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVT-----------KGIKPCYTTWELLTWGY 394
             D    N LL    +  +L+ A   +  +              G++P   T+ +L  G 
Sbjct: 456 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGL 515

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           + +G+  +  E +K+     R  VP+    ++  N L +Q  +D A  +  ++ +     
Sbjct: 516 INEGKFLEAEELYKEM--PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 573

Query: 455 TEI-YNSLLRTYAKAGKM 471
             + +N+L+  Y KAG++
Sbjct: 574 DVVTFNTLVSGYCKAGRV 591



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 137/336 (40%), Gaps = 42/336 (12%)

Query: 175 PLP----YNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAE 229
           PLP    +N ++ + +   + D V  + Q++++   P DV ++N+ +    S +    A 
Sbjct: 73  PLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFAL 132

Query: 230 KAFLELKKTKIDPDWISYSTL-------------TSLYIKMELPE--------------- 261
             F ++ K    PD +++STL               L+ +M  P                
Sbjct: 133 STFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCREG 192

Query: 262 ---KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEY 317
              +A   L  M +   + N++ Y +++     +G     L + +KM  +   K N   Y
Sbjct: 193 RVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIY 252

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           + +I  L K G    A N+Y E +      D    N ++  + +  +   A+     ++ 
Sbjct: 253 SAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE 312

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           + I P   T+  L   Y+K+ +  +  E + + +   R  +P+     +  +   +Q  +
Sbjct: 313 RKINPNVVTYSALINAYVKERKFFEAEELYDEML--PRGIIPNTITYNSMIDGFCKQNRL 370

Query: 438 DGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           D AEH+   +   G  S ++  +N+L+  Y  A ++
Sbjct: 371 DAAEHMFYVMATKG-CSPDVFTFNTLIDGYCGAKRI 405



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 49/282 (17%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L +AE+ F  +  K   PD  T + L+  Y   K+  +   L+ +M+
Sbjct: 357 YNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMT 416

Query: 168 ECGFLK---------------------------------CP--LPYNHMLNLYISNGQLD 192
           E G +                                  CP  +  N +L+    NG+L 
Sbjct: 417 ETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 476

Query: 193 KVPQMLQELKKN------------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
              +M + ++K+              PDV TYN+ ++   ++     AE+ + E+    I
Sbjct: 477 DALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGI 536

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P+ I+YS++ +   K    ++A      M  ++   + V +++L+S Y   G  D+ L 
Sbjct: 537 VPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLE 596

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           ++ +M       +   Y  +I    K+G    A +I+ E  S
Sbjct: 597 LFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMIS 638


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 40/367 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++  V +     AE + E M     +   + YN M+  Y   G+L K  +  +++
Sbjct: 220 TYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDM 279

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + KN  PD +TY   + AC S+ D +T    +LE+++  ++    SYS +     K    
Sbjct: 280 EMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKC 339

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM--------------- 305
            +A    + M ++ CR N   Y++L+  Y+  G  +E +R++++M               
Sbjct: 340 MEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 399

Query: 306 -------------MSLF-------AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
                        M LF         +N   Y  +I  L K G  E AEN+++E      
Sbjct: 400 VNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGC 459

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N ++ A     +++ A + + R+  +G      T+ +L  G  K+ + E+ ++
Sbjct: 460 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIK 519

Query: 406 CFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464
            + K I   +   V   R +      L   G +  A  +L  L   G +    +  ++ T
Sbjct: 520 FWDKMIDKGITPTVASFRALAIG---LCLCGKVARACKILDDLAPMGIIPETAFEDMINT 576

Query: 465 YAKAGKM 471
             KA ++
Sbjct: 577 LCKAQRI 583



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 13/317 (4%)

Query: 187 SNGQLDKVPQML---QELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           S G L  V ++L   + +K+N   P + TYN  +    +    E+AEK F  +   KI P
Sbjct: 192 SFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVP 251

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-SLYTNMGYKDEVLRI 301
           D ++Y+ +   Y K    +KA    ++ME +  + +++ Y +L+ + Y+   + D  L +
Sbjct: 252 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDF-DTCLSL 310

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           + +M     ++    Y+ VI  L K  +  +A  +++         +  +   L+ +Y  
Sbjct: 311 YLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSK 370

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
              +E A   + R+  +G +P   T+ +L  G  K G+++  +E F        K V  +
Sbjct: 371 NGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFC---RNKGVAIN 427

Query: 422 RLITAA-YNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVE 477
            +  A+  + L + G I+ AE+L   +   G    +  YN+++   AK GK+   L +  
Sbjct: 428 AMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFG 487

Query: 478 RMQKDNVQMDAETQKVL 494
           RM+++       T  +L
Sbjct: 488 RMEEEGCDQTVYTFTIL 504


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 186/424 (43%), Gaps = 21/424 (4%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLI 117
           M+K ++ G+       N ++    K  R+K A+E+ + M+ +  D  + + +  +H DL 
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIH-DLC 314

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
              R ++       ++  +M  P+  T + L++ +    K   A  L+ +M   G     
Sbjct: 315 RSNR-IAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 373

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + +N +++ +IS G   +  +M   ++ K  +P  V+Y + L       + + A   ++ 
Sbjct: 374 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 433

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG- 293
           +K+  +    I+Y+ +     K    ++A   L EM K     + V YS+L++ +  +G 
Sbjct: 434 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 493

Query: 294 ---YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
               K+ V RI++  +S     N   Y+ +I +  ++G  ++A  IY+       T D  
Sbjct: 494 FKTAKEIVCRIYRVGLS----PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHF 549

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N+L+ +     ++  AE F   + + GI P   +++ L  GY   G+  K    F + 
Sbjct: 550 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 609

Query: 411 --IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAK 467
             +G    +     L+      L + G +  AE  L +L      V T +YN+LL    K
Sbjct: 610 TKVGHHPTFFTYGSLLKG----LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCK 665

Query: 468 AGKM 471
           +G +
Sbjct: 666 SGNL 669



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 163/374 (43%), Gaps = 17/374 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLK---CP--LPYNHMLNLYISNGQLDKVPQ 196
           TC+A+L S V++ +     + +++M     LK   CP    +N ++N+  + G  +K   
Sbjct: 200 TCNAILGSVVKSGEDVSVWSFLKEM-----LKRKICPDVATFNILINVLCAEGSFEKSSY 254

Query: 197 MLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           ++Q+++K+  +P +VTYN  L     +   + A +    +K   +D D  +Y+ L     
Sbjct: 255 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 314

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +     K    L++M KR    N V Y++L++ ++N G      ++  +M+S     N  
Sbjct: 315 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHV 374

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  +I   +  G F++A  ++   E+   T       +LL       + ++A  FY R+
Sbjct: 375 TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 434

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
              G+     T+  +  G  K G +++ +    +   S     PD    +A  N   + G
Sbjct: 435 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM--SKDGIDPDIVTYSALINGFCKVG 492

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQK 492
               A+ ++  +   G   +  IY++L+    + G  K  + I E M  +    D  T  
Sbjct: 493 RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 552

Query: 493 VLKITSEMPVSEVS 506
           VL +TS     +V+
Sbjct: 553 VL-VTSLCKAGKVA 565



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 20/298 (6%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           L    R   T + L+ S  +  K AEAE  M  M+  G L   + ++ ++N Y ++G+  
Sbjct: 541 LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGL 600

Query: 193 KVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           K   +  E+ K    P   TY   L           AEK    L       D + Y+TL 
Sbjct: 601 KAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLL 660

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   K     KA +   EM +R+   +   Y+SL+S     G    V+ I      LFAK
Sbjct: 661 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG--KTVIAI------LFAK 712

Query: 312 MNDAE---------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             +A          YTC +  + K G+++      ++ +++  T D    N ++  Y   
Sbjct: 713 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 772

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
            ++E        +  +   P  TT+ +L  GY K+  +      ++  I  +   +PD
Sbjct: 773 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII--LNGILPD 828



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 137/350 (39%), Gaps = 8/350 (2%)

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSP 207
           S +  K S    ALM     C     P  Y+ ++ +Y+  G +    ++ + +     +P
Sbjct: 139 SLMSGKSSFVFGALMTTYRLCN--SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNP 196

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
            V T N  L +     +  +      E+ K KI PD  +++ L ++       EK++  +
Sbjct: 197 SVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM 256

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           ++MEK       V Y+++L  Y   G     + +   M S     +   Y  +I  L + 
Sbjct: 257 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 316

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
               K   +  +        +    N L+  + N  ++ +A    N +++ G+ P + T+
Sbjct: 317 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 376

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  G++ +G  ++ L+ F   +   +   P         + L +  + D A    + +
Sbjct: 377 NALIDGHISEGNFKEALKMFY--MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 434

Query: 448 -RNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            RN   V    Y  ++    K G +   ++++  M KD +  D  T   L
Sbjct: 435 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 484


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 186/467 (39%), Gaps = 68/467 (14%)

Query: 47  SLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV 106
            LV    +  + +R   EEG     YEL R +R+        H L +    E    IK +
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD--------HGL-LPSTNEFNMVIKGL 362

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 166
             D  +  D +S  + ++ +      +PD      T + L+H   Q +K  EA  L EKM
Sbjct: 363 LND-KLWKDAVSLFKEMADS-----GIPDAF----TYNILIHWLCQRRKIREALNLWEKM 412

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDK 225
           +E G     + Y+ +L  Y  NG +D+  ++  E+  K  +P+VVTY   +    ++   
Sbjct: 413 NETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAF 472

Query: 226 ETAEKAFLELKKTKID-----------------------------------PDWISYSTL 250
           + A     E+K+  +                                    P  ++Y+++
Sbjct: 473 DKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSI 532

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + +IK  +   A    ++M  +    N V Y+S +  Y      D  L++   +     
Sbjct: 533 INGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGL 592

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQL 365
           + + A Y  +I    + G    A  +      +    D  +PNI      +  Y N   +
Sbjct: 593 RPDIAAYNSLIYGFCQEGNMSHALQVL-----VLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           E A  FY +++ +GI     T+  L  G+ K G +   L+ + + +   +  +PDH   T
Sbjct: 648 EEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVA--KGNIPDHITFT 705

Query: 426 AAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           A  + L   GDID A  LL  + R     +  +YN L+  Y + GK+
Sbjct: 706 ALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKL 752



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 186/455 (40%), Gaps = 28/455 (6%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYAVH 113
           A + +RK ++ G     +  N +V  L K  R + AL +  E +     + +V     +H
Sbjct: 231 ALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 114 LDLISKIRGLSSAENFFE-NLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
              +   R +  A + FE  L D +   D T + L+    +     +A  L  +M + G 
Sbjct: 291 GYCLQ--REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGL 348

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL---WLAACASQNDKETA 228
           L     +N ++   +++        + +E+  +  PD  TYN+   WL  C  +  +E A
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWL--CQRRKIRE-A 405

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              + ++ +T + P  ++Y +L   Y      ++A     EM  +    N V Y++L+  
Sbjct: 406 LNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKG 465

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           + N    D+   +  +M       ND  Y  +I+ L  +G   +   +   +E+      
Sbjct: 466 HINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPT 525

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               N ++  +I    +  A + Y ++  KGI P   T+     GY K    +  L    
Sbjct: 526 AMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL---- 581

Query: 409 KAIGSVR--KWVPDHRLITAAYNKLE----EQGDIDGAEHLLVTLRNAGHV-STEIYNSL 461
           K +  VR     PD     AAYN L     ++G++  A  +LV +   G + +  +YNS 
Sbjct: 582 KMLNDVRCKGLRPD----IAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF 637

Query: 462 LRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           +  Y     M   L   E+M K+ + +D  T   L
Sbjct: 638 ITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL 672



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 119/280 (42%), Gaps = 3/280 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++      +  E   ++++    GF+   + YN ++N +I  G +     + Q++
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P++VTY  ++      +  + A K   +++   + PD  +Y++L   + +    
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNM 612

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L  M K     N   Y+S ++ Y N+   +E LR ++KM+     ++ A YT +
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL 672

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K G    A  +Y E  +     D      L         ++ A    + +    I
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDI 732

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +P    + +L  GYL+ G++++      + +   RK +PD
Sbjct: 733 RPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE--RKIMPD 770



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 31/362 (8%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F+ +P     PD   CS  + S  + + +  A  ++ KM + GF+     +N +++
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVD 255

Query: 184 LYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           + +  G++++   +  E L       VV     +     Q +   A   F E  +  + P
Sbjct: 256 VLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVP 315

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             ++Y+ L     +  +PEKA    ++M       +   ++ ++    N        ++W
Sbjct: 316 TDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLND-------KLW 368

Query: 303 KKMMSLFAKMNDA------EYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI- 354
           K  +SLF +M D+       Y  +I  L +  +  +A N+   WE ++ TG  P +    
Sbjct: 369 KDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNL---WEKMNETGVKPYIVTYH 425

Query: 355 -LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKA 410
            LL  Y     ++ A   Y  +  KG  P   T+  L  G++ K   +K   +L   K+ 
Sbjct: 426 SLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             S   +  +  +     N L   G +     +L      G V T + YNS++  + KAG
Sbjct: 486 GVSCNDYTYNTLI-----NGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540

Query: 470 KM 471
            M
Sbjct: 541 MM 542



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/251 (17%), Positives = 116/251 (46%), Gaps = 1/251 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +++++ +++      A A+ ++M   G     + Y   ++ Y      D   +ML ++
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PD+  YN  +     + +   A +  + + K  + P+   Y++  + Y  +++ 
Sbjct: 588 RCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++M K     +   Y++L+  ++  G     L+++ +M++     +   +T +
Sbjct: 648 EEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTAL 707

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
              L + G+ + A  + DE   +    +  + N+L+  Y+   +L+ A   ++ ++ + I
Sbjct: 708 THGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKI 767

Query: 381 KPCYTTWELLT 391
            P  TT+++L 
Sbjct: 768 MPDDTTYDILV 778



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 33/288 (11%)

Query: 200 ELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E++    P D   +++ + AC  +   + A + F E+  ++I+PD    S   +   K+ 
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +A   L++M+          ++S++ +    G  +E L I  ++++   KM+    T
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLAT 286

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESFYN 373
            ++       E  KA +I++E        D  VP      +L+         E A     
Sbjct: 287 TLMHGYCLQREVRKALDIFEETLR-----DGLVPTDVTYTVLIRGCTEEGMPEKAYELCR 341

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS----------VRKWVPDHRL 423
           ++   G+ P    + ++  G L     +  +  FK+   S          +  W+   R 
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRK 401

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           I  A N  E+  +  G +  +VT           Y+SLL  Y   G M
Sbjct: 402 IREALNLWEKMNET-GVKPYIVT-----------YHSLLLCYCVNGCM 437


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 168/370 (45%), Gaps = 11/370 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           + + L+ + ++  +  A +   ++  K   PD    ++L+  Y +      A +++++M 
Sbjct: 569 FDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMK 628

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
           E       + YN ++   +  G+ D      + ++   +PD +TYN  +     +   E 
Sbjct: 629 EKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTED 688

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A     E+K   I P+ ++Y+ L     K    EKA + L EM         + +  L+ 
Sbjct: 689 ALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVK 748

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y+     D++L+I +K+++   +++   Y  +I+   +LG   KA+ + DE      + 
Sbjct: 749 AYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISA 808

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D    N L+  Y   + +E A   Y+++   GI P  TT+  L  G    G ME+++E  
Sbjct: 809 DLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEET 868

Query: 408 KKAIGSV--RKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSL 461
           +K +  +  R  VP+   + ++ + Y ++   G+      L + +   G V T + YN L
Sbjct: 869 EKLVSEMNERGLVPNAATYDILVSGYGRV---GNRKKTIILHIEMITKGFVPTLKTYNVL 925

Query: 462 LRTYAKAGKM 471
           +  YAK+GKM
Sbjct: 926 ISDYAKSGKM 935



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 164/386 (42%), Gaps = 17/386 (4%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K  G+  + + ++ +      PD  TCS++L+ + ++ K  EA  L  +M E G     +
Sbjct: 333 KFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHV 392

Query: 177 PYNHMLN-LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++N L+ S   ++      Q + +  S D+VT    +         + AE+ F  +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K  + P+ ++YS L   Y K+   E A   L++MEK     N + +SS+++ Y   G  
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 512

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + + + ++M+      N   Y  +I    K GE + A++   E +S        + +IL
Sbjct: 513 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDIL 572

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L       +++ A S    + +KGI P    +  L  GY K+G     L   ++      
Sbjct: 573 LNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEK-- 630

Query: 416 KWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
               + R    AYN L +     G  D   ++   +   G     I YN+++ TY   GK
Sbjct: 631 ----NIRFDVVAYNALIKGLLRLGKYD-PRYVCSRMIELGLAPDCITYNTIINTYCIKGK 685

Query: 471 M--PLIIVERMQKDNVQMDAETQKVL 494
               L I+  M+   +  +A T  +L
Sbjct: 686 TEDALDILNEMKSYGIMPNAVTYNIL 711



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 147/350 (42%), Gaps = 42/350 (12%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           +N +L  +    +L     + Q   KN  P +VTY   +AA       E +   + ++  
Sbjct: 290 FNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIM 349

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I PD ++ S++   + +     +AA   +EM +     N V+Y+++++     G   E
Sbjct: 350 NGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVME 409

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              +  +M+      +    T V+  L K+G+ ++AE +++    ++   +    + LL 
Sbjct: 410 AFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLD 469

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            Y    ++E+AE    ++  + + P   T+  +  GY KKG + K ++  ++ +   R  
Sbjct: 470 GYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNV 527

Query: 418 VPD---HRLITAAYNKLEEQ--------------------------------GDIDGAEH 442
           +P+   + ++   Y K  EQ                                G +D A  
Sbjct: 528 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARS 587

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDA 488
           L++ + + G +  +I  Y SL+  Y K G     L IV+ M++ N++ D 
Sbjct: 588 LIIDMYSKG-IDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDV 636



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 75/306 (24%)

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQN 223
           +M E G     + YN ++N Y   G+ +    +L E+K     P+ VTYN+ +       
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 224 DKETAEKAFLELKKTKIDPDWIS-----------------------------------YS 248
             E AE A  E+   +  P  I+                                   Y+
Sbjct: 720 AVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYN 779

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM-- 306
           TL +++ ++ +  KA   L EM KR    + V Y++L+  Y    + ++ L+ + +M   
Sbjct: 780 TLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVD 839

Query: 307 ------------------------------SLFAKMND-------AEYTCVISSLVKLGE 329
                                          L ++MN+       A Y  ++S   ++G 
Sbjct: 840 GIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGN 899

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            +K   ++ E  +       +  N+L++ Y    ++  A    N L+TKG  P   T+++
Sbjct: 900 RKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDI 959

Query: 390 LTWGYL 395
           LT G+L
Sbjct: 960 LTCGWL 965


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 143/339 (42%), Gaps = 56/339 (16%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +LN     G +D++ Q+  E L+    P++ TYN  +       + E A +    + 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  +DPD+ +Y++L   Y + +  + A    KEM  + CR+N VAY+ L+          
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLC------ 299

Query: 297 EVLRIWKKMMSLFAKMNDAE-------YTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
            V R   + M LF KM D +       YT +I +L       +A N+  E E      + 
Sbjct: 300 -VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNI 358

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK- 408
               +L+ +  ++ +LE A     +++ KG+ P   T+  L  GY K+G +E  L+  + 
Sbjct: 359 HTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVEL 418

Query: 409 --------------------------KAIGSV-----RKWVPDHRLITAAYNKLEE---- 433
                                     KA+G +     RK +PD       YN L +    
Sbjct: 419 MESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPD----VVTYNSLIDGQCR 474

Query: 434 QGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
            G+ D A  LL  + + G V     Y S++ +  K+ ++
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRV 513



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 141/354 (39%), Gaps = 23/354 (6%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           ++  L K KR + A ++ + +E Q D+      Y   +D   K   ++ A    E +  K
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLE-QKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK 561

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P+  T +AL+H    + K  EA  L EKM +            +++  + +G  D  
Sbjct: 562 NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHA 621

Query: 195 PQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            +  Q+ L   T PD  TY  ++     +   + AE    ++K+  + PD  +YS+L   
Sbjct: 622 YRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL------------------SLYTNMGYK 295
           Y  +     A   LK M    C  ++  + SL+                   + +NM   
Sbjct: 682 YGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEF 741

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-VPNI 354
           D V+ + +KM+      N   Y  ++  + ++G    AE ++D  +   G      V N 
Sbjct: 742 DIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNA 801

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
           LL+      +   A    + ++  G  P   + ++L     KKG+ E+    F+
Sbjct: 802 LLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQ 855



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 157/377 (41%), Gaps = 17/377 (4%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A N  + + +K   P+  T + L+ S     K  +A  L+ +M E G +   + YN +
Sbjct: 340 SEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNAL 399

Query: 182 LNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-- 238
           +N Y   G ++    +++ ++ +N  P+  TYN  +     +N      KA   L K   
Sbjct: 400 INGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN----VHKAMGVLNKMLE 455

Query: 239 -KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            K+ PD ++Y++L     +    + A   L  M  R    +   Y+S++         +E
Sbjct: 456 RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEE 515

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              ++  +       N   YT +I    K G+  +A  + ++  S +   +    N L+ 
Sbjct: 516 ACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIH 575

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
                 +L+ A     ++V   ++P  +T  +L    LK G  +     F++ + S  K 
Sbjct: 576 GLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTK- 634

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PL 473
            PD    T        +G +  AE ++  ++  G VS ++  Y+SL++ Y   G+     
Sbjct: 635 -PDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG-VSPDLFTYSSLIKGYGDLGRTNSAF 692

Query: 474 IIVERMQKDNVQMDAET 490
           ++++RM     +    T
Sbjct: 693 VVLKRMHDTGCEPSQHT 709



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 15/397 (3%)

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSS--AENFFENLPDKMRGPD--TCSALLHSY 150
           E  EL+Y  KL+ G Y   L+ +++  GL     + + E L DK+  P+  T + +++ Y
Sbjct: 173 ESFELKY--KLIIGCYNTLLNSLARF-GLVDEMKQVYMEMLEDKV-CPNIYTYNKMVNGY 228

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDV 209
            +     EA   +  + E G       Y  ++  Y     LD   ++ +E+  K    + 
Sbjct: 229 CKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNE 288

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           V Y   +     +   + A   F+++K     P   +Y+ L       E   +A   +KE
Sbjct: 289 VAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKE 348

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           ME++  + N   Y+ L+    +    ++   +  +M+      N   Y  +I+   K G 
Sbjct: 349 MEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            E A ++ +  ES +   + R  N L+  Y  RN +  A    N+++ + + P   T+  
Sbjct: 409 IEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           L  G  + G  +        ++ + R  VPD    T+  + L +   ++ A  L  +L  
Sbjct: 468 LIDGQCRSGNFDSAYRLL--SLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQ 525

Query: 450 AGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDN 483
              +   + Y +L+  Y KAGK+    +++E+M   N
Sbjct: 526 KDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 141/336 (41%), Gaps = 5/336 (1%)

Query: 68  TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127
           TV  Y +  +++ L   +R   AL + + ME +  IK     Y V +D +     L  A 
Sbjct: 322 TVRTYTV--LIKALCGSERKSEALNLVKEME-EKGIKPNIHTYTVLIDSLCSQCKLEKAR 378

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
                + +K   P+  T +AL++ Y +     +A  ++E M           YN ++  Y
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGY 438

Query: 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
                   +  + + L++   PDVVTYN  +       + ++A +    +    + PD  
Sbjct: 439 CKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPW 498

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+++     K +  E+A      +E++    N V Y++L+  Y   G  +E   + +KM
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           +S     N   +  +I  L   G+ ++A  + ++   I          IL+   +     
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           + A   + ++++ G KP   T+      Y ++G+++
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQ 654



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 47/287 (16%)

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNRV-AYSSLLSLYTNMGYKDEVLRIW 302
           IS S ++SL+  ++L  K A        +  R K+ V +Y+SLL+L  N GY   V +I 
Sbjct: 88  ISPSHVSSLF-SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIR 146

Query: 303 KKMM--------SLFA-----KMNDAE------------YTCVISSLVKLGEFEKAENIY 337
             M+        +LF      KMN  E            Y  +++SL + G  ++ + +Y
Sbjct: 147 LLMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY 206

Query: 338 DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
            E        D   PNI     ++  Y     +E A  + + +V  G+ P + T+  L  
Sbjct: 207 MEM-----LEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIM 261

Query: 393 GYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
           GY ++  ++   + FK+    G  R  V    LI    + L  +  ID A  L V +++ 
Sbjct: 262 GYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLI----HGLCVERRIDEAMDLFVKMKDD 317

Query: 451 G-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             + +   Y  L++    + +    L +V+ M++  ++ +  T  VL
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVL 364


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 47/349 (13%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--GQLDKVPQM 197
           P   ++L+HSY   K  A A  L+ +M+ CG   CP P   + N++I +  GQ +K+P  
Sbjct: 346 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG---CP-PGYVVYNIFIGSICGQ-EKLP-- 398

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
                   SPD++               + AEK + E+       + ++ +        +
Sbjct: 399 --------SPDLL---------------DLAEKIYGEMLAANCVLNKVNVANFARCLCGV 435

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA   +KEM ++    +   YS +++   +    ++   ++++M  +    +   Y
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I S  K G  E+A+ +++E  S+  +        L+ AY+   Q+  A   ++R+V 
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 555

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-----WVPDHRLITAAYNKLE 432
            G +P   T+  L  G  K G + K  E + K IG+        + P     T A N + 
Sbjct: 556 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 615

Query: 433 EQGDIDG---------AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
               +DG         A  LL  + ++G     I Y++L+  + KAGK+
Sbjct: 616 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 664



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 19/243 (7%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A+  FE +      P   T +AL+H+Y++ K+  +A  +  +M 
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 554

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----------------KKNTSPDVV 210
           + G     + Y  +++     G + K  ++  +L                 +   +P+VV
Sbjct: 555 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 614

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      +  + A +    +  +  +P+ I Y  L   + K    + A     +M
Sbjct: 615 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 674

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     +   Y+SL+      G  D  +++  +M+      N   YT +I  L ++GE 
Sbjct: 675 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 734

Query: 331 EKA 333
           EKA
Sbjct: 735 EKA 737



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/303 (17%), Positives = 106/303 (34%), Gaps = 52/303 (17%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
           K  +A  L+++M   GF+     Y+ ++       +++K   + QE+K    +PDV TY 
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 496

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + + +       E A+  F E++     P  ++Y+ L   Y+K +   +A      M   
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK----------------------------- 304
            CR N V Y +L+      G   +   ++ K                             
Sbjct: 557 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 616

Query: 305 ----------------------MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
                                 M+S   + N   Y  +I    K G+ + A+ ++ +   
Sbjct: 617 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 676

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                       L+       +L++A    ++++     P   T+  +  G  + G+ EK
Sbjct: 677 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 736

Query: 403 VLE 405
            L+
Sbjct: 737 ALK 739



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 107 SGDYAVHLDLISKIRGLSSA--ENFFENLPDKMR-GPD--TCSALLHSYVQNKKSAEAEA 161
           +G+ +   ++ +K+ G S +   +F+    D+    P+  T  AL+    +  K   A  
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACA 220
           L++ M   G     + Y+ +++ +   G++D   ++ LQ  K    P V TY   +    
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K   ++ K    P+ ++Y+ +     ++   EKA   L  ME++ C  N V
Sbjct: 695 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 754

Query: 281 AYSSLL 286
            Y++L+
Sbjct: 755 TYTALI 760


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 131/301 (43%), Gaps = 6/301 (1%)

Query: 106 VSGDYAVHLDLI---SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
            S D+  +  LI    K++ L  A  F   +  K   PD  T +A++H+     +  EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
             +E+M+        + Y  +++     G++D+   +L +++K   P  VTYN  ++   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  A     E+  +   PD  +Y+TL + + K +  + A    +++  R  R + V
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDE 339
            YS L+      G   E + ++ +M+   + M N   Y  +IS   ++G+ ++A N+ + 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                 + D      L+  +    +L+ A    N++  KG+ P   T+  L  G  ++ +
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 400 M 400
           +
Sbjct: 307 L 307



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A N  E + +    PD  T + L++ + +  +  +A  L+ +M+  G     + +  
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++      +L     +L E++ K+ SP V TYN  L      N  E A K  LE  +  
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE--EMD 354

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+ +S++ +     K+    +A   ++E  +R C  + V Y++++         DE  
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414

Query: 300 RIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           R+++KM+     + N   Y+ +++ L   G  ++A   Y E   +   G     N+L+ A
Sbjct: 415 RVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARG-YIEKGCVPNIG---TYNLLIDA 470

Query: 359 YINRNQLEMAESFYNRLVTKGI 380
           +   N+ E A    + +V +G 
Sbjct: 471 FRKANRDEDARELLDDMVQRGF 492



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 116/299 (38%), Gaps = 50/299 (16%)

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT-SLYIKMELPEK 262
           + S D VTY   +         E A     ++      PD  +Y+ +  +L ++  L E 
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE- 64

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L+EM  R    N V Y+ L+      G  DE + +  KM           Y  +IS
Sbjct: 65  ARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLIS 123

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVT 377
            L K    E+A   YD  E +  +G   +P+I     L+  +    + + A   + +LV 
Sbjct: 124 GLCKA---ERASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +G +P   T+  L  G  K+G++++ ++ F + I S    +P+                 
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS-GSCMPN----------------- 220

Query: 438 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
                            T  YNSL+  + + GKM   + ++ERM +     D  T   L
Sbjct: 221 -----------------TVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 163/371 (43%), Gaps = 11/371 (2%)

Query: 80  ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139
           +LR  K++   + +C W+ L+   K     Y + +D   +      AE+ +  L +    
Sbjct: 135 QLRMRKQWDSIISICRWILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCI 194

Query: 140 P--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           P  DT + L+ +Y  +    +AEA+  +M   G     + YN  +N  +  G  +K  ++
Sbjct: 195 PNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEI 254

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
              +K++   P   TY + +           A K F E+   K  P+  +Y+ L + + +
Sbjct: 255 FLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAR 314

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             L EKA    ++M++     +  +Y++L+  Y+  G+      I+  M  +  + + A 
Sbjct: 315 EGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRAS 374

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  ++ +  + G    AE ++++ + +  T   +   +LL+A+     +   E   N++ 
Sbjct: 375 YNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMC 434

Query: 377 TKGIK-PCYTTWELLT-WGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
             G+K   +    +L  +G L + G+ME+VL   +   GS    +  + ++    N+  +
Sbjct: 435 KSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMEN--GSCEADISTYNILI---NRYGQ 489

Query: 434 QGDIDGAEHLL 444
            G ID  E L 
Sbjct: 490 AGFIDKMEGLF 500



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 138/303 (45%), Gaps = 11/303 (3%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           LQ L+    P+  TY L + A       E AE  F+E+K   +    + Y++  +  +K 
Sbjct: 186 LQLLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKG 245

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
             P KA      M++  C+ +   Y+ L++LY   G     L+++ +M+S   K N   Y
Sbjct: 246 GNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTY 305

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++++  + G  EKAE ++++ +      D    N L+ AY        A   ++ +  
Sbjct: 306 TALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQH 365

Query: 378 KGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
            G +P   ++ +L   Y + G +   E V E  K+    +   +  H ++ +A++K    
Sbjct: 366 MGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRV--GITPTMKSHMVLLSAFSK---T 420

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQ 491
           G++   E +L  +  +G  + T + NS+L  Y + G+   +  ++  M+  + + D  T 
Sbjct: 421 GNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTY 480

Query: 492 KVL 494
            +L
Sbjct: 481 NIL 483


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 161/376 (42%), Gaps = 11/376 (2%)

Query: 119 KIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           ++R    A     +L D+ R P     +C+ LL + +   + A+       ++  G    
Sbjct: 100 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPD 159

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAF 232
              +N  +   ++ G L +   ML+ + ++ +P  +  +YN+ +A          A + F
Sbjct: 160 TFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVF 219

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
            E+ +  + P+ I+Y+T+   +IK    E   +   +M     + N + Y+ LLS     
Sbjct: 220 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRA 279

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E   +  +M S     +   Y+ +   L + G+ +   +++ +      T      
Sbjct: 280 GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTC 339

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           +ILL       ++ +AE     LV  G+ P    +  L  GY + G++E     F +   
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM-- 397

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             R   PDH    A  N L +   I  A+ LL+ +++ G + + E +N+L+  Y + G++
Sbjct: 398 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 457

Query: 472 P--LIIVERMQKDNVQ 485
               I++  MQ++ ++
Sbjct: 458 EKCFIVLSEMQENGLK 473



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 51/355 (14%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  TCS LL+   ++ K + AE +++ +   G +   + YN ++N Y   G+L       
Sbjct: 335 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL------- 387

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                                      E A   F ++K   I PD I+Y+ L +   K E
Sbjct: 388 ---------------------------EGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 420

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   L EM+          +++L+  Y   G  ++   +  +M     K N   Y 
Sbjct: 421 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 480

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++++  K G+  +A  I D+        + +V N ++ AY+     + A     ++ + 
Sbjct: 481 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 540

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA--YNKLEE--- 433
           GI P   T+ LL  G   + Q+ +  E            + +HRLI  A  YN L     
Sbjct: 541 GISPSIVTYNLLIKGLCNQSQISEAEEIINS--------LSNHRLIPDAVSYNTLISACC 592

Query: 434 -QGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI--IVERMQKDNV 484
            +G+ID A  L   +   G  ST   Y+ L+     AG++  +  + ++M ++NV
Sbjct: 593 YRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNV 647



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 1/197 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            ++++++ +N K  EA A+++ M     L     YN +++ Y+ +G  D+   +++++K 
Sbjct: 480 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 539

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N  SP +VTYNL +    +Q+    AE+    L   ++ PD +SY+TL S        +K
Sbjct: 540 NGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK 599

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M K   +     Y  L+S     G   E+  +++KMM      ++A +  ++ 
Sbjct: 600 ALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVE 659

Query: 323 SLVKLGEFEKAENIYDE 339
           +  K G   KAE++  E
Sbjct: 660 AYSKYGNEIKAEDLRKE 676



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 106/253 (41%), Gaps = 3/253 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   +++A++    + D    P  +T + L+ +Y +  +  +   ++ +M 
Sbjct: 409 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G     + Y  ++N +  NG++ +   +L ++  K+  P+   YN  + A       +
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++K   I P  ++Y+ L           +A   +  +       + V+Y++L+
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S     G  D+ L + ++M     K     Y  +IS L   G   + E +Y +    +  
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVV 648

Query: 347 GDPRVPNILLAAY 359
               + NI++ AY
Sbjct: 649 PSNAIHNIMVEAY 661


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 148/332 (44%), Gaps = 3/332 (0%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +  +LR  K++   + +C W+  +         Y + +D   +      AE+ +  L + 
Sbjct: 138 VAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEA 197

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              P  DT + LL +Y  +    +AEA+  +M + GF    + YN  ++  +  G   K 
Sbjct: 198 RCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKA 257

Query: 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ + +K++   P   TY + +      +    A K F E++  K  P+  +++ L + 
Sbjct: 258 VEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 317

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + +  L EKA    +++++     +  AY++L+  Y+  G+      I+  M  +  + +
Sbjct: 318 FAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD 377

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++ +  + G  E A+ +++  + +  T   +   +LL+AY    ++   E   N
Sbjct: 378 RASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN 437

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           ++   GIKP       +   Y + GQ EK+ E
Sbjct: 438 QMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEE 469



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 139/323 (43%), Gaps = 10/323 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +++ Y       K     L+ L+    P   TY L L A  +    E AE  F E++
Sbjct: 171 YNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMR 230

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    P  + Y+      +K    +KA    + M++  C+ +   Y+ L++LY       
Sbjct: 231 KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSY 290

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L+++ +M S   K N   +T ++++  + G  EKAE I+++ +      D    N L+
Sbjct: 291 MALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALM 350

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSV 414
            AY        A   ++ +   G +P   ++ ++   Y + G  E     F+  K +G +
Sbjct: 351 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG-I 409

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL 473
              +  H L+ +AY++    G +   E ++  +  +G    T + NS+L  Y + G+   
Sbjct: 410 TPTMKSHMLLLSAYSR---AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEK 466

Query: 474 I--IVERMQKDNVQMDAETQKVL 494
           +  ++  M+K     D  T  +L
Sbjct: 467 MEEVLTAMEKGPYPADISTYNIL 489



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 1/161 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL +Y +  K A+ E ++ +M + G        N MLNLY   GQ +K+ ++L  ++K  
Sbjct: 419 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 478

Query: 206 SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            P D+ TYN+ +            E+ F  L    + PD +++++    Y + +   +  
Sbjct: 479 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 538

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
              +EM    C  +      LLS  +N     EV  + + M
Sbjct: 539 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 579



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 105/244 (43%), Gaps = 3/244 (1%)

Query: 126 AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  FE L +    PD  +  AL+ +Y +      A  +   M   G       YN M++
Sbjct: 327 AEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 386

Query: 184 LYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
            Y   G  +    + + +K+   +P + ++ L L+A +        E+   ++ K+ I P
Sbjct: 387 AYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 446

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D    +++ +LY ++   EK    L  MEK     +   Y+ L+++Y   G+   +  ++
Sbjct: 447 DTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELF 506

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + + +     +   +T  I +  +  ++ +   +++E        D     +LL+A  N 
Sbjct: 507 RSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 566

Query: 363 NQLE 366
           +Q++
Sbjct: 567 DQIQ 570


>gi|12322983|gb|AAG51473.1|AC069471_4 hypothetical protein [Arabidopsis thaliana]
          Length = 349

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 127/262 (48%), Gaps = 6/262 (2%)

Query: 46  LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           ++L   ++     + +W + G  ++   L  ++  L + +R+ HAL+V EW+  +    L
Sbjct: 1   MALGREQKKVTPPLDEWLKRGKDLNPAVLRGLINSLCESQRFNHALQVSEWITKRGIFDL 60

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA-EAEALME 164
            + D+A  L L+    GL  AE FF+++P+ MR     + LL  Y  +KK+  EAEA  +
Sbjct: 61  STEDFASRLCLVEISTGLKEAEKFFKSIPENMRDDSVHTTLLSLYTISKKTRHEAEATYQ 120

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQ 222
            M     L  P PY  M+ LY   G+ + + ++L+++K+N       +T N  L A AS 
Sbjct: 121 TMRVQNMLLKPYPYYSMIYLYALLGEKNMIDEILRQMKENGVEHDKNLTANNVLKAYASL 180

Query: 223 NDKETAEKAF--LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR- 279
            D E  E     LE+++ +    W +  ++   Y+K     KA   L+  E     K++ 
Sbjct: 181 PDVEAMEMFLMGLEVEEPRFSLAWQTGISIAKAYLKGGSSRKAVEMLRRTELVVDTKSKD 240

Query: 280 VAYSSLLSLYTNMGYKDEVLRI 301
            A   L+ +Y + G K +  R+
Sbjct: 241 SANKVLMMMYWDAGAKQDASRL 262


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 153/366 (41%), Gaps = 10/366 (2%)

Query: 114 LDLISKI---RGLSS-AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
            D+I K+   +G++  A   F+N+    R P   +C++LL + VQN ++ +A  + E+M 
Sbjct: 189 FDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMI 248

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKE 226
             G L     Y  M+N Y   G++D+    ++E++++   P+VVTYN  +    S  D  
Sbjct: 249 ALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVC 308

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K    + +  I  +  +Y+ L   Y K    E+A      M ++    +   Y  L+
Sbjct: 309 GAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLI 368

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G  D+ LRI   M+ +  KMN      +I+   KLG   KA  +    +  +  
Sbjct: 369 HAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N LL  +  +     A    + +  KG+     T+  L       G +E  L  
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTY 465
           +   +   R   P+        +   + G  D A  +     + G   S  +YN+++  +
Sbjct: 489 WN--LMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGF 546

Query: 466 AKAGKM 471
            K  K+
Sbjct: 547 CKMEKL 552



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 128/338 (37%), Gaps = 47/338 (13%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     +L  Y +   +  A  + + M +CG +      N +L+  + NG+         
Sbjct: 186 PTVFDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGE--------- 236

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL---ELKKTKIDPDWISYSTLTSLYIK 256
                                       A KA L   ++    I PD  SY+ + + Y K
Sbjct: 237 ----------------------------AFKALLVYEQMIALGILPDIFSYTIMVNAYCK 268

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A   +KEME+  C  N V Y+SL+  Y ++G      ++   M       N   
Sbjct: 269 EGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRT 328

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           YT +I    K G+ E+AE ++      +   D  V  +L+ AY    +++ A    + ++
Sbjct: 329 YTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAML 388

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYNKLEEQ 434
             G+K        L  GY K G + K  E     + S++ W   PD        +   +Q
Sbjct: 389 KVGLKMNTVICNSLINGYCKLGHVNKAAE----VLVSMKDWNLKPDSYGYNTLLDGFCKQ 444

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            D   A  L   + N G + +   YN+LL+     G +
Sbjct: 445 EDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHV 482



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 12/247 (4%)

Query: 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           + +P+  R   T + L+  Y +  +  +AE L   M E         Y  +++ Y + G+
Sbjct: 320 KGIPENSR---TYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGR 376

Query: 191 LDKVPQ----MLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
           +D   +    ML+  LK NT   V+  +L    C   +  + AE   + +K   + PD  
Sbjct: 377 VDDALRIRDAMLKVGLKMNT---VICNSLINGYCKLGHVNKAAE-VLVSMKDWNLKPDSY 432

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
            Y+TL   + K E   KA     EM  +      V Y++LL    ++G+ +  L IW  M
Sbjct: 433 GYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLM 492

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                  N+  Y  ++ +  K+G F++A  I+ +  S   T    + N ++  +    +L
Sbjct: 493 HKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKL 552

Query: 366 EMAESFY 372
             A+  +
Sbjct: 553 VQAQEIF 559



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 13/289 (4%)

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           N YI++   D++  + +E   + SP V  +++ L   A +   + A   F  + K    P
Sbjct: 164 NNYIASAVWDELVSVYREF--SFSPTV--FDMILKVYAEKGMTKFALCVFDNMGKCGRVP 219

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
              S ++L S  ++     KA    ++M       +  +Y+ +++ Y   G  DE     
Sbjct: 220 SLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFV 279

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           K+M     + N   Y  +I   V LG+   A+ +           + R   +L+  Y  R
Sbjct: 280 KEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKR 339

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA---IGSVRKWVP 419
            Q+E AE  +  ++ K +      + +L   Y   G+++  L   + A   +G     V 
Sbjct: 340 GQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALR-IRDAMLKVGLKMNTVI 398

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
            + LI   Y KL   G ++ A  +LV++++      +  YN+LL  + K
Sbjct: 399 CNSLIN-GYCKL---GHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCK 443


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 149/365 (40%), Gaps = 47/365 (12%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           SAL+    ++   ++A  L  ++ E G L   + YN +++   S G+  +V Q+L ++ +
Sbjct: 199 SALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVR 258

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N  PD  T+N+ + A   +     A+     + K    PD ++Y+ L   Y   E   +
Sbjct: 259 ENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHE 318

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M KR    + + Y+ L+  Y      DE + ++K++ +       A Y  +I 
Sbjct: 319 ARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID 378

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA------------------------ 358
            L   G     + + DE    +   D    NIL+ A                        
Sbjct: 379 GLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438

Query: 359 -----------YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                      Y  RN + +A+  +NR+V  G++P    + +L  GY K   +++ +  F
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
           K+     +  +PD     A+YN L +     G I   + LL  + ++G     I YN LL
Sbjct: 499 KEM--RHKNLIPD----IASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552

Query: 463 RTYAK 467
             + K
Sbjct: 553 DAFCK 557



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 12/334 (3%)

Query: 120 IRGLSSAENFFE--NLPDKM--RG--PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           + G  S EN  E   L ++M  RG  PD  +   L+  Y + K   EA  L +++     
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEK 230
           +     YN +++   ++G++  V ++L E+  +  P DVVTYN+ + A   +     A  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
             + + K  + P+ ++Y+ +   Y        A      M K     + + Y+ L++ Y 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                DE + ++K+M       + A Y  +I  L  LG     + + DE      + D  
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             NILL A+      + A S + R + +GI P + T   +     K  +++   +  K  
Sbjct: 547 TYNILLDAFCKTQPFDKAISLF-RQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHL 605

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           +  +    P+ +  T   N L + G    A  LL
Sbjct: 606 L--MHGCSPNVQTYTILINALCKDGSFGEAMLLL 637



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 149/400 (37%), Gaps = 82/400 (20%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           L  I ++    +A + F  L  K   P   T + L++ Y     +A A +L+  + + G+
Sbjct: 62  LGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGY 121

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
               + +N ++N +  NG + K     Q L                            + 
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNL--------------------------LAQG 155

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           +L         D  +Y TL +   K    + A   L+EMEK + + N V YS+L+     
Sbjct: 156 YLF--------DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCK 207

Query: 292 MGYKDEVLRI----------------------------WKKMMSLFAKM-------NDAE 316
            G+  + L +                            W+++  L  KM       +D  
Sbjct: 208 DGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I +L K G   +A+ +           D    N L+  Y +R  +  A   +NR+V
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMV 327

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE--- 433
            +G++P    + +L  GY K   +++ +  FK+     +  VP      A+YN L +   
Sbjct: 328 KRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN--KNLVP----TIASYNSLIDGLC 381

Query: 434 -QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             G I   + LL  +  +      + YN L+    K G++
Sbjct: 382 NSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/344 (19%), Positives = 134/344 (38%), Gaps = 72/344 (20%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKM 166
           +Y V +D   K + +  A   F+ L +K   P   S  +L+     + + +  + L+++M
Sbjct: 337 NYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396

Query: 167 SECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
                    + YN +++     G+ L+ +  ++  +KK   P++VTYN  +     +N+ 
Sbjct: 397 HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT----------- 274
             A+  F  + K+ ++PD ++Y+ L + Y K E+ ++A    KEM  +            
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 275 ----CRKNRVAY-SSLLSLYTNMGYKDEVL------------RIWKKMMSLFAKM----- 312
               C   R+ +   LL    + G   +V+            + + K +SLF ++     
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIW 576

Query: 313 ------------------------------------NDAEYTCVISSLVKLGEFEKAENI 336
                                               N   YT +I++L K G F +A  +
Sbjct: 577 PDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLL 636

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
             + E      D     I++   + RN+ + AE     ++ +G+
Sbjct: 637 LSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 186/424 (43%), Gaps = 21/424 (4%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLI 117
           M+K ++ G+       N ++    K  R+K A+E+ + M+ +  D  + + +  +H DL 
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIH-DLC 274

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
              R ++       ++  +M  P+  T + L++ +    K   A  L+ +M   G     
Sbjct: 275 RSNR-IAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + +N +++ +IS G   +  +M   ++ K  +P  V+Y + L       + + A   ++ 
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG- 293
           +K+  +    I+Y+ +     K    ++A   L EM K     + V YS+L++ +  +G 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 453

Query: 294 ---YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
               K+ V RI++  +S     N   Y+ +I +  ++G  ++A  IY+       T D  
Sbjct: 454 FKTAKEIVCRIYRVGLS----PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHF 509

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N+L+ +     ++  AE F   + + GI P   +++ L  GY   G+  K    F + 
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 411 --IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAK 467
             +G    +     L+      L + G +  AE  L +L      V T +YN+LL    K
Sbjct: 570 TKVGHHPTFFTYGSLLKG----LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCK 625

Query: 468 AGKM 471
           +G +
Sbjct: 626 SGNL 629



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 163/374 (43%), Gaps = 17/374 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLK---CP--LPYNHMLNLYISNGQLDKVPQ 196
           TC+A+L S V++ +     + +++M     LK   CP    +N ++N+  + G  +K   
Sbjct: 160 TCNAILGSVVKSGEDVSVWSFLKEM-----LKRKICPDVATFNILINVLCAEGSFEKSSY 214

Query: 197 MLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           ++Q+++K+  +P +VTYN  L     +   + A +    +K   +D D  +Y+ L     
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 274

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +     K    L++M KR    N V Y++L++ ++N G      ++  +M+S     N  
Sbjct: 275 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHV 334

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  +I   +  G F++A  ++   E+   T       +LL       + ++A  FY R+
Sbjct: 335 TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 394

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
              G+     T+  +  G  K G +++ +    +   S     PD    +A  N   + G
Sbjct: 395 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM--SKDGIDPDIVTYSALINGFCKVG 452

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQK 492
               A+ ++  +   G   +  IY++L+    + G  K  + I E M  +    D  T  
Sbjct: 453 RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 512

Query: 493 VLKITSEMPVSEVS 506
           VL +TS     +V+
Sbjct: 513 VL-VTSLCKAGKVA 525



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 20/289 (6%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ S  +  K AEAE  M  M+  G L   + ++ ++N Y ++G+  K   +  E+
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K    P   TY   L           AEK    L       D + Y+TL +   K    
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---- 316
            KA +   EM +R+   +   Y+SL+S     G    V+ I      LFAK  +A     
Sbjct: 630 AKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG--KTVIAI------LFAKEAEARGNVL 681

Query: 317 -----YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                YTC +  + K G+++      ++ +++  T D    N ++  Y    ++E     
Sbjct: 682 PNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 741

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              +  +   P  TT+ +L  GY K+  +      ++  I  +   +PD
Sbjct: 742 LPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII--LNGILPD 788



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 137/350 (39%), Gaps = 8/350 (2%)

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSP 207
           S +  K S    ALM     C     P  Y+ ++ +Y+  G +    ++ + +     +P
Sbjct: 99  SLMSGKSSFVFGALMTTYRLCN--SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNP 156

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
            V T N  L +     +  +      E+ K KI PD  +++ L ++       EK++  +
Sbjct: 157 SVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM 216

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           ++MEK       V Y+++L  Y   G     + +   M S     +   Y  +I  L + 
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
               K   +  +        +    N L+  + N  ++ +A    N +++ G+ P + T+
Sbjct: 277 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  G++ +G  ++ L+ F   +   +   P         + L +  + D A    + +
Sbjct: 337 NALIDGHISEGNFKEALKMF--YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 394

Query: 448 -RNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            RN   V    Y  ++    K G +   ++++  M KD +  D  T   L
Sbjct: 395 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 444


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 158/377 (41%), Gaps = 12/377 (3%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           +T  A+++ + +       + L+ +M+  G       YN +++    +G + K  + ++ 
Sbjct: 275 ETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 334

Query: 201 L-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + +    PD+VTYN  ++          A++   +     + P+  SY+ L   Y K   
Sbjct: 335 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGG 394

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A+  L EM +R  + + V Y +L+      G  D  L I +KM+      +   Y  
Sbjct: 395 YDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNI 454

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++S L K  +   A+ +  E    S   D  V   L+  +I    L+ A   +   + KG
Sbjct: 455 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 514

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           + P    +  +  GY K G M+  + C  +     R   PD    +   +   +Q D+DG
Sbjct: 515 MNPGIVGYNAMIKGYCKFGMMKDAMACINRM--KKRHLAPDEFTYSTVIDGYVKQHDLDG 572

Query: 440 AEHL---LVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           A+ +   +V ++   +V T  Y SL+  + + G +   L I   MQ   +  +  T  +L
Sbjct: 573 AQKMFREMVKMKCKPNVVT--YTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630

Query: 495 --KITSEMPVSEVSSIF 509
                 E  + + +S F
Sbjct: 631 IGSFCKEAKLIDAASFF 647



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 119/280 (42%), Gaps = 3/280 (1%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G   A N+   + ++   PD  T  AL+H  V   +   A  + EKM E G       YN
Sbjct: 394 GYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYN 453

Query: 180 HMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            +++      +L     +L E L ++  PD   Y   +       + + A K F    + 
Sbjct: 454 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEK 513

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            ++P  + Y+ +   Y K  + + A   +  M+KR    +   YS+++  Y      D  
Sbjct: 514 GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGA 573

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            +++++M+ +  K N   YT +I+   + G+  ++  I+ E ++     +    +IL+ +
Sbjct: 574 QKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGS 633

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
           +    +L  A SF+  ++     P   T+  L  G+ K G
Sbjct: 634 FCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNG 673



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 243 DWIS------------YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
           DW+S            YS+L  L  +  +  +    L+ M        R A S ++  Y+
Sbjct: 81  DWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYS 140

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           + G  ++ L ++  ++  +    D      +++ LVKLG  E A  +YDE   I G GD 
Sbjct: 141 DSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDR 200

Query: 350 RVPN----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            V N    I++       +LE           +G  P    +  L  GY KKG ME    
Sbjct: 201 CVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANG 260

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
            F +    ++ ++P      A  N   ++GD    + LL+ + + G  V+ ++YN+++  
Sbjct: 261 LFIEL--KLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDA 318

Query: 465 YAKAGKM 471
             K G +
Sbjct: 319 RYKHGHI 325



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/387 (19%), Positives = 160/387 (41%), Gaps = 12/387 (3%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC------SALLHSYVQNKKSAEAEALMEKMS 167
           L+++ K+  +  A   ++ + +     D C        ++    +  K  E   L+E   
Sbjct: 172 LNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRW 231

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN +++ Y   G ++    +  ELK K   P V TY   +     + D +
Sbjct: 232 GQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFK 291

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             ++  +E+    +  +   Y+T+     K     KA  T++ M +  C+ + V Y++L+
Sbjct: 292 AIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLI 351

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S     G   E  ++ ++ +      N   YT +I +  K G +++A N   E       
Sbjct: 352 SGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHK 411

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D      L+   +   ++++A +   +++ +G+ P    + +L  G  KK ++      
Sbjct: 412 PDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLL 471

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTY 465
             + +   +  +PD  +     +     G++D A  L  +T+    +     YN++++ Y
Sbjct: 472 LAEMLD--QSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 529

Query: 466 AKAGKM--PLIIVERMQKDNVQMDAET 490
            K G M   +  + RM+K ++  D  T
Sbjct: 530 CKFGMMKDAMACINRMKKRHLAPDEFT 556


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 143/334 (42%), Gaps = 12/334 (3%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           S ++H   +  K  EA  L  +M++ G     + YN +++       +DK   +L+++  
Sbjct: 215 STVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG 274

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N   PD VTYN  +   ++    + A + F E+    + P+ ++ ST  +   K    E+
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M  +  + N ++YS+LL  Y   G   ++  ++  M+      N   +  +++
Sbjct: 335 AREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G   +A  I+++ +      D      ++ A+     ++ A   +N ++ KG++P
Sbjct: 395 GYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEP 454

Query: 383 CYTTWELLTWGYLKKGQM----EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
            +  ++ L  G+   G +    E V E   K +G      P      +  N L ++G + 
Sbjct: 455 NFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLG------PCILSFASLINHLCKEGRVF 508

Query: 439 GAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            A+ +  + +R        I+ SL+  Y   GKM
Sbjct: 509 EAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKM 542



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 154/370 (41%), Gaps = 11/370 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEA-EALMEKM 166
           Y++ +D   + R L  A  FF  L  +    D    S+LL      K++ EA + L  +M
Sbjct: 106 YSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRM 165

Query: 167 SECGFLKCPLPYNHMLNLYISNGQ----LDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222
            E G +   + Y+ +L     +G+    LD + +M  +       +VV Y+  +     +
Sbjct: 166 PELGCVPDAISYSTVLKSVCDDGRSQWALD-ILRMAVKQGGGCPCNVVVYSTVVHGLFKE 224

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                A   F E+ +  + P+ ++Y+++     K    +KA   L++M     + + V Y
Sbjct: 225 GKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTY 284

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           ++L+  Y+ +G   + +R++K+M S     N    +  ++ L K G  E+A   +D   +
Sbjct: 285 NTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLA 344

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                +    + LL  Y     L    + +N +V  GI P    + +L  GY K G + +
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVRE 404

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
            +  F+      R   PD     A  +     G +D A      + + G   +  +Y  L
Sbjct: 405 AMFIFEDM--QKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCL 462

Query: 462 LRTYAKAGKM 471
           ++ +   G +
Sbjct: 463 IQGFCTHGDL 472



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/379 (16%), Positives = 149/379 (39%), Gaps = 12/379 (3%)

Query: 65  EGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIR 121
           +G   +++  N +V    K    + A+ + E M+   L  D+      Y   +    ++ 
Sbjct: 380 DGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVL----TYLAVIHAFCRMG 435

Query: 122 GLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
            +  A + F ++ DK   P+      L+  +  +    +AE L+ ++   G   C L + 
Sbjct: 436 SMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFA 495

Query: 180 HMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            ++N     G++ +  ++   + +     DV  +   +           A +    +   
Sbjct: 496 SLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSV 555

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I+PD ++Y TL +   K    +      +E+  +  +     Y  +L    + G     
Sbjct: 556 GIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAA 615

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
             ++++M+     +    Y+ +++ L +    E+A  ++ +  +++   D  + NI+++ 
Sbjct: 616 KEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISK 675

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418
                + E AE  +  +   G+ P   T+ ++    +K+G +E+    F   + S     
Sbjct: 676 MFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKS--GLS 733

Query: 419 PDHRLITAAYNKLEEQGDI 437
           P    I      L E+G+I
Sbjct: 734 PTSHFINVIVRTLLEKGEI 752


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 16/353 (4%)

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           + F  + DK   P+  T + L++         +A  L+++M E GF+   + YN +LN Y
Sbjct: 219 SLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWY 278

Query: 186 ISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK---ID 241
              G+     +++  +  K    DV TYN+++    + +    + KA+L LKK +   I 
Sbjct: 279 CKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNH---RSAKAYLLLKKMRKEMIS 335

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P+ ++Y+TL + ++K      AA    EM K     N V Y++L+  + ++G  +E LR+
Sbjct: 336 PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRL 395

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M +   ++N+  Y  +++ L K  +FE A+ + +               +L+     
Sbjct: 396 LDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCK 455

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
              L+ A      +   G+ P   T+  L  G+ + G ++   E   +     R  +  +
Sbjct: 456 NGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM---YRSGLVLN 512

Query: 422 RLI--TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           ++I  T  YN   + G++  A  +   +   GH +     N L+ +  + GK+
Sbjct: 513 KIIYSTLIYN-FCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 564



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 145/334 (43%), Gaps = 8/334 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ +L S V++K++    +L  +MS+ G       +N ++N     G L K   +L+++
Sbjct: 200 TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 259

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++N   P +VTYN  L     +   + A +    +    I+ D  +Y+            
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA   LK+M K     N V Y++L++ +   G      +++ +M       N   Y  +
Sbjct: 320 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 379

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I     +G+FE+A  + D  E+     +      LL       + E+A+    R+    +
Sbjct: 380 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDM 439

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDID 438
              +  + +L  G  K G +++ ++     +G++ K    PD    ++  N     G+I 
Sbjct: 440 VVGHIAYTVLIDGLCKNGMLDEAVQ----LVGNMYKDGVNPDVITYSSLINGFCRVGNIK 495

Query: 439 GAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
            A+ ++  +  +G V  + IY++L+  + + G +
Sbjct: 496 SAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 529



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/448 (20%), Positives = 182/448 (40%), Gaps = 9/448 (2%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           + A   +++ +E G        N ++    K  RYK A+E+ ++M  +  I+     Y V
Sbjct: 250 KKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNV 308

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +D +      + A    + +  +M  P+  T + L++ +V+  K   A  +  +MS+  
Sbjct: 309 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFD 368

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
                + YN ++  +   G  ++  ++L  ++      + VTY   L         E A+
Sbjct: 369 LSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAK 428

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +    ++   +    I+Y+ L     K  + ++A   +  M K     + + YSSL++ +
Sbjct: 429 RLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGF 488

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             +G       I  +M      +N   Y+ +I +  + G   +A  +Y          D 
Sbjct: 489 CRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADH 548

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N+L+++     +L  AE F   +   G+ P   T++ +  GY   G        F  
Sbjct: 549 FTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDD 608

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKA 468
            I   +   P      +    L + G++  A+  L  L    G V + +YN+LL    K+
Sbjct: 609 MIKCGQH--PSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKS 666

Query: 469 GKM--PLIIVERMQKDNVQMDAETQKVL 494
           G +   + + ++M ++NV  D+ T   L
Sbjct: 667 GNLHEAVALFDKMVQNNVLPDSYTYSSL 694



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 146/367 (39%), Gaps = 38/367 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   LL+   +++K   A+ L+E+M     +   + Y  +++    NG LD+  Q++  +
Sbjct: 410 TYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNM 469

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT--------- 251
            K   +PDV+TY+  +       + ++A++    + ++ +  + I YSTL          
Sbjct: 470 YKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 529

Query: 252 ----SLYIKMELPEKAAT---------------TLKEMEKRTCRKNRVA-------YSSL 285
                +Y  M      A                 L E EK  C  +R+        Y  +
Sbjct: 530 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 589

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++ Y ++G        +  M+      +   Y  ++  L K G   +A+   +    I G
Sbjct: 590 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 649

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D  + N LLA       L  A + ++++V   + P   T+  L  G  +KG+    + 
Sbjct: 650 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 709

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 464
            F  A+G      P+H + T   + L + G    A +    +   G    T  +N+++ +
Sbjct: 710 LFGTAMGR-GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDS 768

Query: 465 YAKAGKM 471
            ++ G+M
Sbjct: 769 CSRRGQM 775



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/205 (15%), Positives = 84/205 (40%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +KK T PD V +N  + +C+ +     A   F  ++   + P+  +Y+ L   + K +  
Sbjct: 751 MKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQAL 810

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +  +    M +     +++ + SL+   +  G  D  +++  KM+      +   +  +
Sbjct: 811 LRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNIL 870

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   + G+  KA ++ +   ++    D    N +      ++    +    + ++  G+
Sbjct: 871 INKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGV 930

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P +  +  L  G  + G ++   +
Sbjct: 931 IPKHAQYITLINGMCRVGDIQGAFK 955



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T + L+H + ++ K AEA  L   M  CG     + YN ++    +NG      ++ +E+
Sbjct: 1006 TFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEM 1065

Query: 202  K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            + ++  P++ TY + + A ++ N+    EK   +L++
Sbjct: 1066 RHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQE 1102


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 178  YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN M+ + +  GQ +KV Q+  E+  + +  PD VTY+  ++A      +++A +   E+
Sbjct: 1187 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 1246

Query: 236  KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K+  + P    Y+ L +L+ K      A +  +EM  + CR +   Y+ L+      G  
Sbjct: 1247 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 1306

Query: 296  DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            DE    + +M     + +      +I+ L K G  + A  ++ E E++         N +
Sbjct: 1307 DEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTI 1366

Query: 356  LAA-YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
            + A + ++++     S++ R+   GI P   T+ +L  G+ K  +MEK +   ++     
Sbjct: 1367 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM--DE 1424

Query: 415  RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
            + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KAG++
Sbjct: 1425 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 1482



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 156/390 (40%), Gaps = 8/390 (2%)

Query: 83   KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD- 141
            KL R   A+++   M+ +  ++  +  Y + + L  K      A + FE +  +   PD 
Sbjct: 1232 KLGRRDSAIQLLNEMK-EIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV 1290

Query: 142  -TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
             T + L+    +  +  EA     +M   G     +  N+M+N     G+LD   ++ QE
Sbjct: 1291 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 1350

Query: 201  LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKME 258
            ++     P VVTYN  + A      + +   ++ E +K++ I P   +YS L   + K  
Sbjct: 1351 METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTN 1410

Query: 259  LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              EKA   L+EM+++       AY SL+         D    +++++       +   Y 
Sbjct: 1411 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 1470

Query: 319  CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
             +I  L K G  + A N++DE   +    D    N L++       L+ A S   R+   
Sbjct: 1471 VMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEH 1530

Query: 379  GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
            G  P   ++ ++  G  K G   + +E       S  +  PD          L   G  +
Sbjct: 1531 GCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVR--PDVVSYNTVLGALSHAGMFE 1588

Query: 439  GAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
             A  L+  +   G     I Y+S+L    K
Sbjct: 1589 EASKLMKEMNTLGFEYDLITYSSILEAIGK 1618



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 129/304 (42%), Gaps = 40/304 (13%)

Query: 63   KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIR 121
            + EG       +N ++  L K  R   A+++ + ME L+    +V+ +  +     SK R
Sbjct: 1317 QREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSR 1376

Query: 122  GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
              S   ++FE + +    P   T S L+  + +  +  +A  L+E+M E GF  CP  Y 
Sbjct: 1377 A-SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYC 1435

Query: 180  HMLNLYISNGQLDKVPQMLQELKKNT---------------------------------- 205
             +++      + D   ++ QELK+N                                   
Sbjct: 1436 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 1495

Query: 206  --SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              +PDV  YN  ++  A     + A      +++    PD  SY+ + +   K   P +A
Sbjct: 1496 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 1555

Query: 264  ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               L  M++ T R + V+Y+++L   ++ G  +E  ++ K+M +L  + +   Y+ ++ +
Sbjct: 1556 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEA 1615

Query: 324  LVKL 327
            + K+
Sbjct: 1616 IGKV 1619



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 55   AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD-YAVH 113
            A + + +  E+G          ++  L K KRY  A E+  + EL+ +    S   YAV 
Sbjct: 1415 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL--FQELKENCGSSSARVYAVM 1472

Query: 114  LDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
            +  + K   L  A N F+ +      PD  +  AL+    +     EA + M +M E G 
Sbjct: 1473 IKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGC 1532

Query: 172  LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEK 230
            +     YN +LN     G   +  +ML  +K++T  PDVV+YN  L A +     E A K
Sbjct: 1533 IPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASK 1592

Query: 231  AFLELKKTKIDPDWISYSTL 250
               E+     + D I+YS++
Sbjct: 1593 LMKEMNTLGFEYDLITYSSI 1612



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 262  KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCV 320
            +A T   +++ R C+    AY+S++ +  + G  ++V +++ +M +      D   Y+ +
Sbjct: 1167 QAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSAL 1226

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            IS+  KLG  + A  + +E + I      ++  +L+A +   N    A S +  +  +  
Sbjct: 1227 ISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYC 1286

Query: 381  KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            +P   T+  L  G  K G++++    F +         PD   +    N L + G +D A
Sbjct: 1287 RPDVFTYTELIRGLGKAGRIDEAYHFFCEM--QREGCRPDTVFMNNMINFLGKAGRLDDA 1344

Query: 441  EHL---LVTLRNAGHVST--EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
              L   + TLR    V T   I  +L  + ++A ++P    ERM++  +   + T  +L
Sbjct: 1345 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF-ERMKESGISPSSFTYSIL 1402


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 131/301 (43%), Gaps = 6/301 (1%)

Query: 106 VSGDYAVHLDLI---SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE 160
            S D+  +  LI    K++ L  A  F   +  K   PD  T +A++H+     +  EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220
             +E+M+        + Y  +++     G++D+   +L +++K   P  VTYN  ++   
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                  A     E+  +   PD  +Y+TL + + K +  + A    +++  R  R + V
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDE 339
            YS L+      G   E + ++ +M+   + M N   Y  +IS   ++G+ ++A N+ + 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                 + D      L+  +    +L+ A    N++  KG+ P   T+  L  G  ++ +
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENR 306

Query: 400 M 400
           +
Sbjct: 307 L 307



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 102/235 (43%), Gaps = 10/235 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++   K+  L  A +    +  K   PD  T ++L+    +  + ++A  ++ +M 
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMR 318

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKE 226
                     YN +L+ Y    QL++  + ML+E+  +  P+VV++N+ +      N   
Sbjct: 319 RKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM--DCPPNVVSFNIMIRGLCKVNRSS 376

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSL 285
            A +   E ++ + +PD + Y+T+     + +  ++A    ++M E+  C  N + YS+L
Sbjct: 377 EAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTL 436

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           ++   N G  D      +K        N   Y  +I +  K    E A  + D+ 
Sbjct: 437 ITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDM 487


>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 707

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 29/321 (9%)

Query: 133 LPDKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           L +KM G    PD  TCSA++++Y  +    +A +L ++     +      ++ ++ +Y 
Sbjct: 227 LFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAAAFSALIKMYS 286

Query: 187 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G  D+  ++ QE+K     P+VVTYN  L A         A+  + E++   + PD+I
Sbjct: 287 MAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFI 346

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+ L  +Y      E A    KEM+          Y+ LL++Y +MGY D  + I+ +M
Sbjct: 347 TYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEM 406

Query: 306 MSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
            S      D+  +  +I+   + G+  +AE + +E           V   L+  Y    +
Sbjct: 407 NSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKR 466

Query: 365 LEMAESFYNRLVTKGIKP----CYTTWELLTWGYLKKGQMEKVLECFKKA---IGSVRKW 417
            +     + +L+  GI P    C +   +LT     K ++ K+ +C +KA   +GSV K+
Sbjct: 467 TDDVVKVFKQLLELGIVPNDHFCCSLLNVLTQA--PKEELGKLTDCIEKANTKLGSVVKY 524

Query: 418 VPDHRLITAAYNKLEEQGDID 438
           +            +EE+GD D
Sbjct: 525 L------------VEEEGDGD 533



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 25/300 (8%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N M+N Y +   L  V    Q++K   S  VV YN+ L    +  D E AEK F E+ + 
Sbjct: 151 NSMVNPYTA---LLAVNYFNQKIKP--SRHVVLYNVTLKLFRASRDFEGAEKLFDEMLQR 205

Query: 239 KIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            + P+  ++ST+ +   K +EL EK +    E +  TC     AY    +L  N+   D+
Sbjct: 206 GVKPNNFTFSTMVNCANKPVELFEKMSGFGYEPDGITCSAMVYAY----ALSNNV---DK 258

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
            + ++ + ++    ++ A ++ +I      G +++   IY E + +    +    N LL 
Sbjct: 259 AVSLYDRAIAEKWCLDAAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLG 318

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
           A +   +   A++ Y  + + G+ P + T+  L   Y      E  L  +K+  G+    
Sbjct: 319 AMLKAEKHRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDM 378

Query: 418 VPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTE--IYNSLLRTYAKAGKM 471
             D       YNKL     + G ID A  +   + ++G    +   + SL+  Y+++GK+
Sbjct: 379 TAD------LYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKV 432


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 158/349 (45%), Gaps = 24/349 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDY------AVHLDLISKI 120
           + NR++  + KLK+Y   + + + ME+       Y   +V   +      ++ L ++ K+
Sbjct: 87  DFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKM 146

Query: 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
             L      +E  PD++    T  +L++ + +  + ++A +L++KM E G+    + YN 
Sbjct: 147 LKLG-----YE--PDRV----TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++      +++      +E+ +K   P+VVTY   +    + +    A +   ++ K K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P+ I+YS L   ++K     +A    +EM + +   + V YSSL++        DE  
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN 315

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +++  M+S     +   Y  +I+   K    E    ++ E        +    N L+  +
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
                ++ A+ F++++   GI P   T+ +L  G    G++EK L  F+
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 39/346 (11%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K  E G+       N I+  L K KR   A +  + +E +  I+     Y   ++ +   
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIE-RKGIRPNVVTYTALVNGLCNS 238

Query: 121 RGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
              S A     ++  K   P+  T SALL ++V+N K  EA+ L E+M            
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM------------ 286

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
                                 ++ +  PD+VTY+  +      +  + A + F  +   
Sbjct: 287 ----------------------VRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSK 324

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
               D +SY+TL + + K +  E      +EM +R    N V Y++L+  +   G  D+ 
Sbjct: 325 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384

Query: 299 LRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              + + M  F    D   Y  ++  L   GE EKA  I+++ +      D      ++ 
Sbjct: 385 QEFFSQ-MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                 ++E A S +  L  KG+KP   T+  +  G   KG + +V
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L++ + + K+  +   L  +MS+ G +   + YN ++  +   G +DK  +   ++  
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              SPD+ TYN+ L       + E A   F +++K ++D D ++Y+T+     K    E+
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           A +    +  +  + + V Y++++S     G   EV  ++ KM
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN ++ + +  G  +KV ++  E+  + +  PD VTY+  ++A A  N  ++A + F E+
Sbjct: 191 YNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEM 250

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+TL  +Y K+   E+A   +KEM  R C      Y+ L+      G  
Sbjct: 251 KENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRV 310

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++    +K M+    K +      +I+ L +      A  ++DE + ++   +    N +
Sbjct: 311 EDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTI 370

Query: 356 LAAYIN-RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + +    +  L  A S++ R+   GI P   T+ +L  GY K  ++EK L   ++     
Sbjct: 371 IKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEM--DE 428

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  N L      D A  L   L+ N G  S  +Y  +++ + K G++
Sbjct: 429 KGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRL 486



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 9/254 (3%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           LS A ++FE +      P   T S L+  Y +  +  +A  L+E+M E GF  CP  Y  
Sbjct: 381 LSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCS 440

Query: 181 MLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNL-WLAACASQNDKETAEKAFLELK 236
           ++N      + D   ++ QELK+N   +S  V    +     C   N+   A   F E+K
Sbjct: 441 LINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNE---AINLFNEMK 497

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    PD  +Y+ L +  ++ E  ++A +  + ME+  C  +  +++ +L+     G   
Sbjct: 498 KLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPK 557

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L ++ KM +   K +   +  ++  L + G FE+A  +  E  S     D    + +L
Sbjct: 558 GALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSIL 617

Query: 357 AAYINRNQLEMAES 370
            A    +  +M ES
Sbjct: 618 EAVGKVDDCKMVES 631



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 13/255 (5%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S +  +  K ++  +A +   +++ R CR     Y+S++ +    G+ ++V  ++ +M S
Sbjct: 157 SEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCS 216

Query: 308 LFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 D   Y+ +IS+  KL   + A  ++DE +        ++   L+  Y    ++E
Sbjct: 217 EVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVE 276

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A      +  +       T+  L  G  K G++E     +K  +    K  PD  L+  
Sbjct: 277 EALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCK--PDVVLMNN 334

Query: 427 AYNKLEEQGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIV----ERM 479
             N L     +  A  L   +  L  A +V T  YN+++++  +A K PL       ERM
Sbjct: 335 LINILGRSNHLRDAIKLFDEMKLLNCAPNVVT--YNTIIKSLFEA-KAPLSEASSWFERM 391

Query: 480 QKDNVQMDAETQKVL 494
           +KD +   + T  +L
Sbjct: 392 KKDGIVPSSFTYSIL 406



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 37/261 (14%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC-ASQNDKETAEKAFLELK 236
           N+++N+   +  L    ++  E+K  N +P+VVTYN  + +   ++     A   F  +K
Sbjct: 333 NNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMK 392

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS--------- 287
           K  I P   +YS L   Y K    EKA   L+EM+++       AY SL++         
Sbjct: 393 KDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYD 452

Query: 288 -------------------LYTNM-------GYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
                              +Y  M       G  +E + ++ +M  L    +   Y  ++
Sbjct: 453 VANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALM 512

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + +V+    ++A +++   E    T D    NI+L         + A   + ++    IK
Sbjct: 513 TGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIK 572

Query: 382 PCYTTWELLTWGYLKKGQMEK 402
           P   ++  +     + G  E+
Sbjct: 573 PDVVSFNTILGCLSRAGLFEE 593


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 11/333 (3%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           C  ++    +  K   A  + E MS+ G       Y  +L+ Y   G L +   + + +K
Sbjct: 33  CVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMK 92

Query: 203 -KNTSPDVVTYNLWLAACASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K  SP+V+TYN  + AC  +  +       F E+K+  + P+ I+Y+ + +  + + L 
Sbjct: 93  EKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLF 152

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A+  LKEM+   C  N ++Y+++++     G  DE + ++++M  L    N   Y  +
Sbjct: 153 DTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSL 212

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           + +  + G +EKA  ++   E      D    N ++           AE  +  +  KG 
Sbjct: 213 LKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGC 272

Query: 381 KPCYTTWELLTWGYLK---KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            P   T+  +   Y K   +G+   +L+  K+A  +   W  +  L  A      + G  
Sbjct: 273 TPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAG-----KAGSA 327

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             A  +   L+ AGH    + +++L+  Y + G
Sbjct: 328 SEAMQIFHELKAAGHSPNLVSFSALINMYGRLG 360



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           + +++S  ++ +  EA  L E+M E G       YN +L  Y   G+ +K   +   ++ 
Sbjct: 175 TTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMED 234

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD+ TYN  +  C        AE  FLE+++    PD ++Y+T+   Y K     +
Sbjct: 235 EGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGR 294

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   LK M++  C  +   Y+ LL      G   E ++I+ ++ +     N   ++ +I+
Sbjct: 295 ARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALIN 354

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              +LG FE+AE     W  +  TG   VPN
Sbjct: 355 MYGRLGYFEEAER---AWVEMRATGC--VPN 380



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 3/226 (1%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKM 166
            Y   ++ + +   L  A   FE + +  R P+  T ++LL +Y +  +  +A  L   M
Sbjct: 173 SYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM 232

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDK 225
            + G +     YN ++++    G   +   +  E+ +K  +PD VTYN  L A +  + +
Sbjct: 233 EDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRR 292

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A      +K+    PD  +Y+ L     K     +A     E++      N V++S+L
Sbjct: 293 GRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSAL 352

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           +++Y  +GY +E  R W +M +     N   Y  +++S    G ++
Sbjct: 353 INMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYK 398



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 140/363 (38%), Gaps = 46/363 (12%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNK-KSAEAEALMEKMSECGFLKCPLPYN 179
           L  A   FE + +K   P+  T + L+++  +   +  +   L E+M + G     + YN
Sbjct: 81  LKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYN 140

Query: 180 HMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            M+N  +     D   Q+L+E+K  N  P+V++Y   + +       + A + F E+K+ 
Sbjct: 141 CMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKEL 200

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              P+  +Y++L   Y +    EKA      ME   C         +  LYT        
Sbjct: 201 GRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGC---------IPDLYT-------- 243

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
                             Y  VI    + G F +AE ++ E +    T D    N +L A
Sbjct: 244 ------------------YNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDA 285

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRK 416
           Y   ++   A      +   G  P   T+ +L     K G   + ++ F   KA G    
Sbjct: 286 YSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPN 345

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLII 475
            V    LI   Y +L   G  + AE   V +R  G V +   Y  L+ +Y+  G   ++ 
Sbjct: 346 LVSFSALIN-MYGRL---GYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYKVLC 401

Query: 476 VER 478
             R
Sbjct: 402 CIR 404


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 143/325 (44%), Gaps = 4/325 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           L+  Y +      A  L+++M +   +   + Y  M+N       L    ++L+++    
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             P+VV Y+  +   AS+   E A +    +  + + PD   Y+ + S   K    E+A+
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
           T L E++ R  + + V + + +  Y+  G   E  + + +M+      N+  YT +I+  
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGH 300

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G   +A +I+    ++    D +  +  +   +   +++ A   ++ L  KG+ P  
Sbjct: 301 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+  L  G+ K+G++EK  E   +    ++   P+  +  A  + L + GDI  A  L 
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEM--CLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 418

Query: 445 VTLRNAG-HVSTEIYNSLLRTYAKA 468
             +   G    +  Y++++  Y K+
Sbjct: 419 DGMPEKGLEPDSVTYSTMIDGYCKS 443



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 168/407 (41%), Gaps = 26/407 (6%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + + ++ A+  FE +      PD   CSAL+  +++     E   + + M  CG    
Sbjct: 20  LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPIN 79

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN +++     G+++K  ++L+ +      P+  T+ L +     +++   A +   
Sbjct: 80  LITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLD 139

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++K  + P  +SY  + +     +    A   L++M     + N V YS+L+  Y + G
Sbjct: 140 EMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 199

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             +E  R+   M       +   Y  +IS L K G+ E+A     E +      D     
Sbjct: 200 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 259

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAI 411
             +  Y    ++  A  +++ ++  G+ P    + +L  G+ K G + + L  F+   A+
Sbjct: 260 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHAL 319

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           G     +PD +  +A  + L + G +  A  +   L+  G V     Y+SL+  + K G+
Sbjct: 320 G----VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 375

Query: 471 M----------------PLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           +                P I +     D +    + Q+  K+   MP
Sbjct: 376 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 422



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 142/342 (41%), Gaps = 26/342 (7%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K   +  A   F+ +P+K   PD  T S ++  Y +++  AEA +L  +M 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G       YN +++     G ++K   + +E+ +      +++N  +         + 
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 517

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A + F E+   +I PD ++Y+T+   + K    E+A    KEM++R    N +       
Sbjct: 518 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER----NLIV------ 567

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                   D V  +++KM++   K ++  Y  VI +  K     +A  + DE        
Sbjct: 568 --------DTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 619

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
              + ++L+ A   R  L  A    + +   G+KP       L   + + G+M++    F
Sbjct: 620 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 679

Query: 408 K--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
           +  K++G     VPD   +    N      D + A +L+  L
Sbjct: 680 EGVKSLG----LVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/441 (19%), Positives = 177/441 (40%), Gaps = 49/441 (11%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           ALE+ + ME + ++   +  Y   ++ +   + LS A    E +      P+    S L+
Sbjct: 134 ALELLDEME-KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLI 192

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTS 206
             Y    +  EA  L++ MS  G       YN +++     G++++    L E++ +   
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 252

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----ME---- 258
           PD VT+  ++   +       A K F E+    + P+   Y+ L + + K    ME    
Sbjct: 253 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 312

Query: 259 ---------LP------------------EKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
                    LP                  ++A     E++++    +   YSSL+S +  
Sbjct: 313 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 372

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G  ++   +  +M       N   Y  ++  L K G+ ++A  ++D         D   
Sbjct: 373 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 432

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            + ++  Y     +  A S ++ + +KG++P    +  L  G  K+G MEK +  F++ +
Sbjct: 433 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 492

Query: 412 GSVRKWVPDHRLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 468
                       +   Y    K++E   +   + ++       HV+   Y +++  + KA
Sbjct: 493 QKGFATTLSFNTLIDGYCKSCKIQEASQL--FQEMIAKQIMPDHVT---YTTVIDWHCKA 547

Query: 469 GKM--PLIIVERMQKDNVQMD 487
           GKM    ++ + MQ+ N+ +D
Sbjct: 548 GKMEEANLLFKEMQERNLIVD 568



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 11/235 (4%)

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           P+  +Y+ +T+   + +   +A  T +EM+K   + +  A S+L+  +   G  DEVLRI
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
              M+S    +N   Y  +I  L K G+ EKA  I     ++    + R   +L+  Y  
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWV 418
            + +  A    + +  + + P   ++  +  G      +    K+LE  K     ++  V
Sbjct: 128 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE--KMTFSGLKPNV 185

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
             +  +   Y     +G I+ A  LL  +  +G V+ +I  YN+++   +KAGKM
Sbjct: 186 VVYSTLIMGY---ASEGRIEEARRLLDGMSCSG-VAPDIFCYNAIISCLSKAGKM 236



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 105/271 (38%), Gaps = 3/271 (1%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K   P+  TY +  A          A+  F E++KT + PD+ + S L   +++    +
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 62

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +       M       N + Y+ L+      G  ++   I K M++L  K N   +  +I
Sbjct: 63  EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 122

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               +     +A  + DE E  +          ++    +   L +A     ++   G+K
Sbjct: 123 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 182

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P    +  L  GY  +G++E+          S     PD     A  + L + G ++ A 
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGM--SCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L+ ++  G     + + + +  Y+K GKM
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 271


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 143/335 (42%), Gaps = 5/335 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P T S L+     +    +A  ++++M   G       Y  ++  Y+   + +   ++L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 200 ELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +  N   PD+  YN  +         E A+   +++ +  I P+  +Y    +LY K  
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A    K+M       N V Y+ L+  + ++G   E L  +K M+      +   Y+
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYS 630

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I SL K G+ ++A  ++ ++       D  + N L++ +     +E A   Y+ ++  
Sbjct: 631 AIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN 690

Query: 379 GIKPCYTTWELLT--WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           GI P    +  L   +GY K G + +  + F + I   +   PD  +     +   ++G+
Sbjct: 691 GINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS--KGISPDGYIYCILIDGCGKEGN 748

Query: 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           ++ A  L    +     S   +NSL+ ++ K GK+
Sbjct: 749 LEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKV 783



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 145/342 (42%), Gaps = 42/342 (12%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELK 236
           Y +++  +   G + K   +L E++K   P++ TYN ++   C +    E  E   L ++
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMME 304

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  + PD  +Y+ L   + K +  ++A    + M       NR  Y++L+  +   G  +
Sbjct: 305 K-GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIE 363

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----------WES---I 343
           E LRI  +M++   K+N   Y  +I  + K GE  KA ++++E          W     I
Sbjct: 364 EALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLI 423

Query: 344 SG----------------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            G                      T  P   ++L++   + + L+ A    ++++  G+K
Sbjct: 424 DGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK 483

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P    +  L   Y+++ + E  +E  K  I +    +PD          L     ++ A+
Sbjct: 484 PNVFMYGTLIKAYVQESRYEMAIELLKIMIAN--GVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKD 482
            LLV +   G   +   Y + +  Y+K+G++   + ER  KD
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ--VAERYFKD 581



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +++ +  +G++ +  ++  ++  K  +P++VTY + + A       E AE+ FL+++
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              I P+ ++Y++L   Y ++    K  +  K+ME R    + +AY  + S Y   G   
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 889

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           E L++  K +    K+ D  +  +I  L K
Sbjct: 890 EALKLLNKSLVEGIKLEDDVFDALIFHLCK 919



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 78/267 (29%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           H D+ + +  LS+    F+ + +K   PD    SA++HS  +N K+ EA  +  K  + G
Sbjct: 601 HCDVGNTVEALST----FKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----------------------------- 201
            +     YN +++ +   G ++K  Q+  E+                             
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTE 716

Query: 202 ---------KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-------------- 238
                     K  SPD   Y + +  C  + + E A   F E ++               
Sbjct: 717 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDS 776

Query: 239 --------------------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                               K+ P+ ++Y+ L   Y K E+ E+A     +ME R    N
Sbjct: 777 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 836

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKM 305
            + Y+SLL  Y  +G + +++ ++K M
Sbjct: 837 TLTYTSLLLSYNQIGNRFKMISLFKDM 863


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 150/336 (44%), Gaps = 3/336 (0%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           ++  +  +LR  K++   + +C W+  +         Y + +D   +      AE+ +  
Sbjct: 64  DIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLE 123

Query: 133 LPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           L +    P  DT + LL +Y  +    +AEA+  +M + GF    + YN  ++  +  G 
Sbjct: 124 LLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGD 183

Query: 191 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
             K  ++ + +K++   P   TY + +      +    A K F E++  K  P+  +++ 
Sbjct: 184 TQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTA 243

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + + +  L EKA    +++++     +  AY++L+  Y+  G+      I+  M  + 
Sbjct: 244 LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG 303

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + + A Y  ++ +  + G  E A+ +++  + +  T   +   +LL+AY    ++   E
Sbjct: 304 CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCE 363

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
              N++   GIKP       +   Y + GQ EK+ E
Sbjct: 364 EIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEE 399



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 9/302 (2%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L+ L+    P   TY L L A  +    E AE  F E++K    P  + Y+      +K 
Sbjct: 122 LELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKG 181

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA    + M++  C+ +   Y+ L++LY         L+++ +M S   K N   +
Sbjct: 182 GDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTF 241

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++++  + G  EKAE I+++ +      D    N L+ AY        A   ++ +  
Sbjct: 242 TALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQH 301

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQG 435
            G +P   ++ ++   Y + G  E     F+  K +G +   +  H L+ +AY++    G
Sbjct: 302 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG-ITPTMKSHMLLLSAYSR---AG 357

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQK 492
            +   E ++  +  +G    T + NS+L  Y + G+   +  ++  M+K     D  T  
Sbjct: 358 KVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYN 417

Query: 493 VL 494
           +L
Sbjct: 418 IL 419


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--GQLDKVPQM 197
           P   ++L+HSY   K  A A  L+ +M+ CG   CP P   + N++I +  GQ +K+P  
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG---CP-PGYVVYNIFIGSICGQ-EKLP-- 229

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
                   SPD++               + AEK + E+       + ++ +        +
Sbjct: 230 --------SPDLL---------------DLAEKIYGEMLAANCVLNKVNVANFARCLCGV 266

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA   +KEM ++    +   YS +++   +    ++   ++++M  +    +   Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I S  K G  E+A+ +++E  S+  +        L+ AY+   Q+  A   ++R+V 
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--------------RKWVPDHRL 423
            G +P   T+  L  G  K G + K  E + K IG+                   P+   
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 446

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             A  + L +   +D A  LL  + ++G     I Y++L+  + KAGK+
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/389 (18%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A+  FE +      P   T +AL+H+Y++ K+  +A  +  +M 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----------------KKNTSPDVV 210
           + G     + Y  +++     G + K  ++  +L                 +   +P+VV
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      +  + A +    +  +  +P+ I Y  L   + K    + A     +M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     +   Y+SL+      G  D  +++  +M+      N   YT +I  L ++GE 
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           EKA  +    E    + +      L+       +++++   + ++  KG  P Y T+ +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVR-----KWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
                  G ++K     +  +G ++     K++  +R     ++K         +  +L 
Sbjct: 626 INHLCAAGLLDKA----RLLLGEMKQTYWPKYLQGYRCAIQGFSK-----SFIASLGILE 676

Query: 446 TLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            + + G V    +Y  L+  ++KAG++ +
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEI 705


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--GQLDKVPQM 197
           P   ++L+HSY   K  A A  L+ +M+ CG   CP P   + N++I +  GQ +K+P  
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG---CP-PGYVVYNIFIGSICGQ-EKLP-- 229

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
                   SPD++               + AEK + E+       + ++ +        +
Sbjct: 230 --------SPDLL---------------DLAEKIYGEMLAANCVLNKVNVANFARCLCGV 266

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA   +KEM ++    +   YS +++   +    ++   ++++M  +    +   Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I S  K G  E+A+ +++E  S+  +        L+ AY+   Q+  A   ++R+V 
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--------------RKWVPDHRL 423
            G +P   T+  L  G  K G + K  E + K IG+                   P+   
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 446

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             A  + L +   +D A  LL  + ++G     I Y++L+  + KAGK+
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/389 (18%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A+  FE +      P   T +AL+H+Y++ K+  +A  +  +M 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----------------KKNTSPDVV 210
           + G     + Y  +++     G + K  ++  +L                 +   +P+VV
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      +  + A +    +  +  +P+ I Y  L   + K    + A     +M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     +   Y+SL+      G  D  +++  +M+      N   YT +I  L ++GE 
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           EKA  +    E    + +      L+       +++++   + ++  KG  P Y T+ +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVR-----KWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
                  G ++K     +  +G ++     K++  +R     ++K         +  +L 
Sbjct: 626 INHLCAAGLLDKA----RLLLGEMKQTYWPKYLQGYRCAIQGFSK-----SFIASLGILE 676

Query: 446 TLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            + + G V    +Y  L+  ++KAG++ +
Sbjct: 677 EMESYGTVPIAPVYGMLIDCFSKAGRLEI 705


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 159/363 (43%), Gaps = 34/363 (9%)

Query: 114 LDLISKIRGLSSAENFFENLP--DKMRGPDTCSAL--LHS---------------YVQNK 154
           + +++K + L +A++  E +   D +      SAL  LH                Y   K
Sbjct: 85  IHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANTK 144

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-----PDV 209
              EA  + E M   GF     P+ H   + +++   D++  M+ ++ K  +      ++
Sbjct: 145 MKQEAIQVFEHMMVNGFR----PHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANI 200

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
             YN+ + AC    D E A+    E++   + PD  +Y+TL SLY K  +  +A +    
Sbjct: 201 HVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDR 260

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           ME+   + + V Y+SL+  +   G   E +R++K++    A  N   YT +I    +L +
Sbjct: 261 MEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLND 318

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++A  + +E E+          N +L       ++  A    N +  K I+P   T   
Sbjct: 319 LDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNT 378

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLR 448
           L   Y K G M+  L+   + + +  K     ++ +   + K+ E   +DGA+ LL+++ 
Sbjct: 379 LINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE---MDGAKELLLSML 435

Query: 449 NAG 451
           +AG
Sbjct: 436 DAG 438



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 7/234 (2%)

Query: 241 DPDWIS--YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           DPD  S  +S L  +Y   ++ ++A    + M     R +  A + LL+        D V
Sbjct: 125 DPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMV 184

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            +++KKM  +  + N   Y  +I +  K G+ EKA+N+  E ES     D    N L++ 
Sbjct: 185 WKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISL 244

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418
           Y  +     A S  +R+  +GIKP   T+  L  G+ K+G+M + +  FK+    +R   
Sbjct: 245 YCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE----IRDAT 300

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           P+H   T   +      D+D A  L   +   G   T + YNS+LR   + G++
Sbjct: 301 PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRI 354



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 5/263 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T ++L+H + +  +  EA  L +++ +       + Y  +++ Y     LD+  ++
Sbjct: 268 PDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT--PNHVTYTTLIDGYCRLNDLDQALRL 325

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E++ +   P VVTYN  L           A K   E+ + KI+PD ++ +TL + Y K
Sbjct: 326 REEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCK 385

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   + A      M +   + ++  Y +L+  +  +   D    +   M+      +   
Sbjct: 386 IGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCT 445

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y+ ++         E    + DE+       D  +   L+  +  R Q++ A+  ++ + 
Sbjct: 446 YSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQ 505

Query: 377 TKGIKPCYTTWELLTWGYLKKGQ 399
            KG       +  L + Y K G+
Sbjct: 506 EKGTLGDSVIYTSLAYAYWKLGK 528



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 1/238 (0%)

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           +  A   F+ + D      T + L+  Y +     +A  L E+M   G     + YN +L
Sbjct: 286 MREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSIL 345

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
                 G++    ++L E+ +K   PD VT N  + A     D ++A K    + +  + 
Sbjct: 346 RKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLK 405

Query: 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
            D  +Y  L   + K+   + A   L  M       +   YS L+  Y N   ++ VL++
Sbjct: 406 LDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKL 465

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
             + +     ++ + Y  +I    K  + + A+ I+   +     GD  +   L  AY
Sbjct: 466 PDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAY 523


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 48/372 (12%)

Query: 142 TCSALLHSYVQNK-KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + ++H Y++ K K   A  L+E M E G     + YN ++N  +++G+L+   ++L +
Sbjct: 19  TYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDD 78

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K++  S ++VTY   +   A+    +   K F E+K     P+  +Y+ L   Y +  L
Sbjct: 79  MKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGL 138

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A     EM+   C K+   Y+  +++Y   G  +++ R+  +M +     +   Y  
Sbjct: 139 FKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNT 198

Query: 320 VISSLVKLGEFEKAENIYDE--------------------------------WESISGTG 347
           ++    K   F KA  I  E                                +E++   G
Sbjct: 199 LLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKG 258

Query: 348 DPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              VPNI     +L+ Y        A   ++ ++  G  PC   +  L   Y   G  ++
Sbjct: 259 --VVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQE 316

Query: 403 VLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
            L CF+     +RK   VPD ++ TA  +   + G    AE L   +   G V   I Y 
Sbjct: 317 ALACFQ----DMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYG 372

Query: 460 SLLRTYAKAGKM 471
            L+R +A AG++
Sbjct: 373 ILVRAFANAGRL 384



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 4/271 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMEL 259
           +K      VVTY + +     Q  K       LE +K++   PD I Y+ L +  +    
Sbjct: 9   MKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGR 68

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E A   L +M++     N V Y++L+  Y N G   +  +++++M       N   Y  
Sbjct: 69  LEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNA 128

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    + G F++A  +YDE + +    D    NI +A Y  R  LE  E   + + TKG
Sbjct: 129 LIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKG 188

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           + P   T+  L   Y KK    K  E  ++   +   + P+        +   ++  +  
Sbjct: 189 VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEA--GYRPNIWTYNIMLSSARKEQSVAE 246

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           A  L   L++ G V   + Y+++L  Y + G
Sbjct: 247 ATQLFENLKSKGVVPNIVTYSAMLSLYGRHG 277



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 133 LPDKMRGPDTCSALLHSY-----VQNKKS--AEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           L D+M G   C+  +H+Y     +  K+    + E L+++M   G     + YN +L++Y
Sbjct: 145 LYDEMDGVG-CAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVY 203

Query: 186 ISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
                  K  ++L+E+ +    P++ TYN+ L++   +     A + F  LK   + P+ 
Sbjct: 204 AKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNI 263

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++YS + SLY +  L  +AA    EM +  C    +AYS L+  Y + G   E L  ++ 
Sbjct: 264 VTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQD 323

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M       +   YT ++ +  K G   +AE +Y E        D     IL+ A+ N  +
Sbjct: 324 MRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383

Query: 365 L 365
           L
Sbjct: 384 L 384


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 3/280 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +++++   +  + +EA   +    +  F+   + YN +++ Y+  G +D    + +E+
Sbjct: 538 TFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREM 597

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +   SP+V+TY   +      N  + A K   ++K+  ++ D   Y+TL + + KM+  
Sbjct: 598 CRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDM 657

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A     ++ +     N + Y+ ++S Y N+   +  L + K+M++     +   YT +
Sbjct: 658 ENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSL 717

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L+K G+   A ++Y E        D  + N+L+    N  QLE A      +    I
Sbjct: 718 IDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNI 777

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
            P    +  L  G+ K+G +++      + +   +  VPD
Sbjct: 778 TPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLD--KGLVPD 815



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 146/355 (41%), Gaps = 41/355 (11%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYN 213
           K  EA  L +KM   G     + YNHM+  +   G +D   +++   ++    P+ +TY 
Sbjct: 446 KVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYT 505

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDP-DW---------------------------- 244
           + +     + D E A   F ++    I P D+                            
Sbjct: 506 ILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQ 565

Query: 245 ------ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
                 ++Y+ +   Y+K    + A +  +EM +     N + Y+SL++ +      D  
Sbjct: 566 SFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLA 625

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
           L++   M     +++   Y  +I+   K+ + E A   + +   +  T +  V NI+++A
Sbjct: 626 LKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISA 685

Query: 359 YINRNQLEMAESFYNRLVTKGIKPC-YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
           Y N N +E A + +  ++   I PC    +  L  G LK+G++   L+ + + +   R  
Sbjct: 686 YRNLNNMEAALNLHKEMINNKI-PCDLKIYTSLIDGLLKEGKLSFALDLYSEML--CRGI 742

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
           VPD  +     N L   G ++ A  +L  +       T  +YN+L+  + K G +
Sbjct: 743 VPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNL 797



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 122/273 (44%), Gaps = 1/273 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T + L+    +      A  + ++M   G +     +N ++N     G++ +    L   
Sbjct: 503 TYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTF 562

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K++  P  +TYN  +     +   ++AE  + E+ +++I P+ I+Y++L + + K    
Sbjct: 563 IKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKM 622

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     +M+++    +   Y++L++ +  M   +   + + K++ +    N   Y  +
Sbjct: 623 DLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIM 682

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+   L   E A N++ E  +     D ++   L+   +   +L  A   Y+ ++ +GI
Sbjct: 683 ISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGI 742

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            P    + +L  G    GQ+E   +  K+  G+
Sbjct: 743 VPDIFMYNVLINGLCNHGQLENAGKILKEMDGN 775



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 135/338 (39%), Gaps = 20/338 (5%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSEC----GF-LKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           LL+ YV    +  A+ L+E + EC    GF L     +N++L  Y+   ++ +  +  + 
Sbjct: 118 LLNKYVFGDSAPAAKVLVELLVECAERYGFKLSDSRVFNYLLISYVRANKITEAVECFRA 177

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            L+    P V   N+ L A   +N  E A + F E+ + +I  D  +   L    +K   
Sbjct: 178 MLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
             +A     +   R  + +  +YS ++         D   ++ +    L    ++  Y  
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAA 297

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVP-NI-----LLAAYINRNQLEMAESFYN 373
           VI + V+LG F +A  + DE        D RVP N+     L+  Y  R  +  A   ++
Sbjct: 298 VIGACVRLGNFGEALRLKDEMV------DSRVPVNVAVATSLIKGYCVRGDVNSALRLFD 351

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            +V  G+ P    + +L     K G +EK  E + +         P   ++        +
Sbjct: 352 EVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRM--KCMGLQPTVFILNFLLKGFRK 409

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           Q  ++ A  LL      G  S   YN +L    + GK+
Sbjct: 410 QNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKV 447



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 19/322 (5%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLA 217
           A  L+E   E G++     Y  ++   +  G   +  ++  E+  +  P +V      + 
Sbjct: 276 ASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIK 335

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
               + D  +A + F E+ +  + P+   +S L     K+   EKA      M+    + 
Sbjct: 336 GYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQP 395

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND----AEYTCVISSLVKLGEFEKA 333
                + LL      G++ + L     ++   A  N       Y  V+  L +LG+  +A
Sbjct: 396 TVFILNFLLK-----GFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEA 450

Query: 334 ENIYDEWESISGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            N+   W+ + G G  P +   N ++  +  +  ++ A    N ++  G+KP   T+ +L
Sbjct: 451 CNL---WDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTIL 507

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
             G  KKG  E     F + + +    VP      +  N L + G +  A   L T    
Sbjct: 508 MEGSFKKGDCEHAFNMFDQMVAA--GIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQ 565

Query: 451 GHVSTEI-YNSLLRTYAKAGKM 471
             + T + YN ++  Y K G +
Sbjct: 566 SFIPTSMTYNCIIDGYVKEGAI 587


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 16/356 (4%)

Query: 123 LSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           +  A  FFE+L  K RG   C    +ALL  + +     EA  ++++M E G     + Y
Sbjct: 274 VDEAVAFFEDL--KSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTY 331

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +   Y   G  ++  + L  +  K   P+  TYN  + A  +    + A   F  +KK
Sbjct: 332 NELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKK 391

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P   +Y+ +  +  K          L EM +  C  NRV ++++L++    G +  
Sbjct: 392 NGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGY 451

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
           V R+ ++M S   ++    +  +IS+  + G    A  +YDE  +   T      N LL+
Sbjct: 452 VTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLS 511

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSV- 414
               +     A+S  N++  +G KP   ++ LL   + K G    + E  +K +  G+V 
Sbjct: 512 VLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGI-EAIEKEVYEGTVF 570

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
             WV    L+ + +        ++G E     +   GH     I+NS+L  YAK G
Sbjct: 571 PSWVILRTLVISNFKCRR----LEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNG 622



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 149/378 (39%), Gaps = 44/378 (11%)

Query: 133 LPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           LP    G D    + +LH+     +   A  L  ++   G     + YN ML++Y   G+
Sbjct: 178 LPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGR 237

Query: 191 -LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
              ++  ML+E++     PD  T +  +AAC      + A   F +LK     P  ++Y+
Sbjct: 238 SWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYN 297

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L  ++ K     +A   LKEME+  C+ + V Y+ L   Y   G+ +E  +    M+S 
Sbjct: 298 ALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSK 357

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEW---------------------------- 340
               N   Y  ++++    G+ ++A  ++D W                            
Sbjct: 358 GILPNAFTYNTIMTAYGNAGKVDEALALFD-WMKKNGFIPYVNTYNLILGMLGKKSRFNV 416

Query: 341 -------ESISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
                   S SG    RV  N +LA    R           R+ + G++ C  T+  L  
Sbjct: 417 MLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLIS 476

Query: 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452
            Y + G      + + +   +   + P      A  + L  QGD   A+ ++  ++N G 
Sbjct: 477 AYGRCGSRANAFKMYDEMTAA--GFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGF 534

Query: 453 VSTEI-YNSLLRTYAKAG 469
              ++ Y+ LL+ +AK G
Sbjct: 535 KPNDMSYSLLLQCHAKGG 552



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 1/181 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N ML++Y  NG   K  +M   +K+   SPD++TYN  +   A  N+   AEK    LK
Sbjct: 611 FNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLK 670

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
            +++ PD +SY+T+ + + K  L ++A   L EM     R   V Y +L+  Y +     
Sbjct: 671 TSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFS 730

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E   +   M+       +  Y  V+ S  K   F++A     E        D ++ + L 
Sbjct: 731 EAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLLSTLT 790

Query: 357 A 357
           A
Sbjct: 791 A 791



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 109/258 (42%), Gaps = 1/258 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + L+ +Y +    A A  + ++M+  GF  C   YN +L++    G       ++ +
Sbjct: 469 DTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINK 528

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K +   P+ ++Y+L L   A   +    E    E+ +  + P W+   TL     K   
Sbjct: 529 MKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRR 588

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E      +E+  R  + + V ++S+LS+Y   G   +   ++  +       +   Y  
Sbjct: 589 LEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNS 648

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    K  E  +AE I    ++     D    N ++  +  +  ++ A+   + ++  G
Sbjct: 649 MMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADG 708

Query: 380 IKPCYTTWELLTWGYLKK 397
           ++PC  T+  L  GY  +
Sbjct: 709 VRPCVVTYHTLVGGYASR 726



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 114/273 (41%), Gaps = 2/273 (0%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           ++E+M  CG   C   +N +++ Y   G      +M  E+     +P + TYN  L+  +
Sbjct: 455 VLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLS 514

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
            Q D   A+    ++K     P+ +SYS L   + K           KE+ + T   + V
Sbjct: 515 RQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWV 574

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
              +L+         + + R ++++M+   K +   +  ++S   K G + KA  ++D  
Sbjct: 575 ILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSI 634

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +    + D    N ++  Y   N+   AE    RL T  +KP   ++  +  G+ K+G +
Sbjct: 635 KQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLI 694

Query: 401 EKVLECFKKAIG-SVRKWVPDHRLITAAYNKLE 432
           ++      + I   VR  V  +  +   Y   E
Sbjct: 695 KEAQRILSEMIADGVRPCVVTYHTLVGGYASRE 727



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 130/317 (41%), Gaps = 16/317 (5%)

Query: 189 GQLDKVPQMLQELKK--NTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           GQ D V  +L E+      SP  DV  Y   L A + +   E A + F ELK+  + P  
Sbjct: 163 GQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTH 222

Query: 245 ISYSTLTSLYIKM--ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           + Y+ +  +Y +M    P+  A  L+EM       +    S++++     G  DE +  +
Sbjct: 223 VMYNVMLDVYGRMGRSWPQIVA-MLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFF 281

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + + S         Y  ++    K G + +A  +  E E      D    N L  +Y   
Sbjct: 282 EDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARA 341

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPD 420
              E A    + +V+KGI P   T+  +   Y   G++++ L  F   K  G +  +V  
Sbjct: 342 GFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFI-PYVNT 400

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVE 477
           + LI     K   +   +    +L  +  +G     + +N++L    K G    +  ++E
Sbjct: 401 YNLILGMLGK---KSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLE 457

Query: 478 RMQKDNVQMDAETQKVL 494
           RM+   V++  +T   L
Sbjct: 458 RMKSCGVELCRDTFNTL 474



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 111/241 (46%), Gaps = 15/241 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L ++S+    ++A++    + ++   P+  + S LL  + +   +A  EA+ +++ 
Sbjct: 506 YNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVY 565

Query: 168 ECGFLKCPLPYNHMLNLYISN---GQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQN 223
           E         +  +  L ISN    +L+ + +  QE + +   PD+V +N  L+  A   
Sbjct: 566 EGTVFPS---WVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNG 622

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
               A + F  +K+  + PD I+Y+++  +Y K     +A   LK ++    + + V+Y+
Sbjct: 623 MYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYN 682

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           ++++ +   G   E  RI  +M++      D    CV++    +G +   E   +  E +
Sbjct: 683 TVMNGFCKQGLIKEAQRILSEMIA------DGVRPCVVTYHTLVGGYASREMFSEAREVV 736

Query: 344 S 344
           S
Sbjct: 737 S 737


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--GQLDKVPQM 197
           P   ++L+HSY   K  A A  L+ +M+ CG   CP P   + N++I +  GQ +K+P  
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG---CP-PGYVVYNIFIGSICGQ-EKLP-- 164

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
                   SPD++               + AEK + E+       + ++ +        +
Sbjct: 165 --------SPDLL---------------DLAEKIYGEMLAANCVLNKVNVANFARCLCGV 201

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
              +KA   +KEM ++    +   YS +++   +    ++   ++++M  +    +   Y
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I S  K G  E+A+ +++E  S+  +        L+ AY+   Q+  A   ++R+V 
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 321

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--------------RKWVPDHRL 423
            G +P   T+  L  G  K G + K  E + K IG+                   P+   
Sbjct: 322 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 381

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             A  + L +   +D A  LL  + ++G     I Y++L+  + KAGK+
Sbjct: 382 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 430



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/389 (18%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A+  FE +      P   T +AL+H+Y++ K+  +A  +  +M 
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 320

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----------------KKNTSPDVV 210
           + G     + Y  +++     G + K  ++  +L                 +   +P+VV
Sbjct: 321 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 380

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      +  + A +    +  +  +P+ I Y  L   + K    + A     +M
Sbjct: 381 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     +   Y+SL+      G  D  +++  +M+      N   YT +I  L ++GE 
Sbjct: 441 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           EKA  +    E    + +      L+       +++++   + ++  KG  P Y T+ +L
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVR-----KWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
                  G ++K     +  +G ++     K++  +R     ++K         +  +L 
Sbjct: 561 INHLCAAGLLDKA----RLLLGEMKQTYWPKYLQGYRCAIQGFSK-----SFIASLGILE 611

Query: 446 TLRNAGHVS-TEIYNSLLRTYAKAGKMPL 473
            + + G V    +Y  L+  ++KAG++ +
Sbjct: 612 EMESYGTVPIAPVYGMLIDCFSKAGRLEI 640


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 156/380 (41%), Gaps = 38/380 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + K+  +  A + F  +P K   PD  T S L++   + ++  EA  L+++M 
Sbjct: 177 YNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQ 236

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G L  P+ +N +++    NG L +  +++  +  K   P+ VTYN  +     +   +
Sbjct: 237 AEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 296

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++  +K  P+ ++Y T+ +  +K    E     L  ME+R  + N   YSSL+
Sbjct: 297 KALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 356

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---- 342
           S     G  +  +R+WK+M     K N   Y   I  L +  + ++AE+I  E  S    
Sbjct: 357 SGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 416

Query: 343 ------------ISGTGDPR-------------------VPNILLAAYINRNQLEMAESF 371
                           GD +                     ++LL       +L  A + 
Sbjct: 417 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTV 476

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  ++ +G+KP    +  +  G    G ++K L+ F +      K  PD       +N L
Sbjct: 477 WTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNAL 536

Query: 432 EEQGDIDGAEHLLVTLRNAG 451
             Q ++  A  LL ++ + G
Sbjct: 537 CRQDNLTRAIDLLNSMLDEG 556



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 3/244 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +++  V+ +++ +   ++  M E G       Y+ +++     G+ +   ++ +E+
Sbjct: 316 TYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 375

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +K   P+VV Y  ++         + AE    E+      P+  +YS+L   + K    
Sbjct: 376 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 435

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA    KEM  +  R N V  S LL+     G   E L +W  M+    K +   Y+ +
Sbjct: 436 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 495

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I  L  +G  +K   ++ E +       P V   NIL  A   ++ L  A    N ++ +
Sbjct: 496 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 555

Query: 379 GIKP 382
           G  P
Sbjct: 556 GCDP 559



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 10/313 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
           +N +LN+ I  G      +    +     K   P+++TYNL + A       + A   F 
Sbjct: 139 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 198

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+     +PD  +YSTL +   K    ++A   L EM+   C  N V ++ L+   +  G
Sbjct: 199 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 258

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                 ++   M       N+  Y  +I  L   G+ +KA ++ ++  S     +     
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 318

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            ++   + + + E        +  +G K     +  L  G  K+G+ E  +  +K+   +
Sbjct: 319 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM--A 376

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--- 469
            +   P+  +  A  + L      D AE +L  + + G +     Y+SL++ + K G   
Sbjct: 377 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 436

Query: 470 KMPLIIVERMQKD 482
           K  L+  E M +D
Sbjct: 437 KAILVWKEMMSQD 449



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           CS LL+   ++ +  EA  +   M   G     + Y+ M+      G +DK  ++  E++
Sbjct: 457 CSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 516

Query: 203 ---KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-LTSLYIKME 258
                + PDVVTYN+   A   Q++   A      +     DPD ++ +  L +L  ++ 
Sbjct: 517 CQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERIN 576

Query: 259 LPEKAATTLKEMEKRTCRKNR 279
            P+     L E+  R  ++ R
Sbjct: 577 PPQDGRLFLDELVVRLLKRER 597


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 186/424 (43%), Gaps = 21/424 (4%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLI 117
           M+K ++ G+       N ++    K  R+K A+E+ + M+ +  D  + + +  +H DL 
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIH-DLC 274

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
              R ++       ++  +M  P+  T + L++ +    K   A  L+ +M   G     
Sbjct: 275 RSNR-IAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + +N +++ +IS G   +  +M   ++ K  +P  V+Y + L       + + A   ++ 
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG- 293
           +K+  +    I+Y+ +     K    ++A   L EM K     + V YS+L++ +  +G 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGR 453

Query: 294 ---YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
               K+ V RI++  +S     N   Y+ +I +  ++G  ++A  IY+       T D  
Sbjct: 454 FKTAKEIVCRIYRVGLS----PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHF 509

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N+L+ +     ++  AE F   + + GI P   +++ L  GY   G+  K    F + 
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 411 --IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAK 467
             +G    +     L+      L + G +  AE  L +L      V T +YN+LL    K
Sbjct: 570 TKVGHHPTFFTYGSLLKG----LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCK 625

Query: 468 AGKM 471
           +G +
Sbjct: 626 SGNL 629



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 163/374 (43%), Gaps = 17/374 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLK---CP--LPYNHMLNLYISNGQLDKVPQ 196
           TC+A+L S V++ +     + +++M     LK   CP    +N ++N+  + G  +K   
Sbjct: 160 TCNAILGSVVKSGEDVSVWSFLKEM-----LKRKICPDVATFNILINVLCAEGSFEKSSY 214

Query: 197 MLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           ++Q+++K+  +P +VTYN  L     +   + A +    +K   +D D  +Y+ L     
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 274

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +     K    L++M KR    N V Y++L++ ++N G      ++  +M+S     N  
Sbjct: 275 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHV 334

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  +I   +  G F++A  ++   E+   T       +LL       + ++A  FY R+
Sbjct: 335 TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 394

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
              G+     T+  +  G  K G +++ +    +   S     PD    +A  N   + G
Sbjct: 395 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM--SKDGIDPDIVTYSALINGFCKVG 452

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQK 492
               A+ ++  +   G   +  IY++L+    + G  K  + I E M  +    D  T  
Sbjct: 453 RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 512

Query: 493 VLKITSEMPVSEVS 506
           VL +TS     +V+
Sbjct: 513 VL-VTSLCKAGKVA 525



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 20/298 (6%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           L    R   T + L+ S  +  K AEAE  M  M+  G L   + ++ ++N Y ++G+  
Sbjct: 501 LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGL 560

Query: 193 KVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           K   +  E+ K    P   TY   L           AEK    L       D + Y+TL 
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLL 620

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           +   K     KA +   EM +R+   +   Y+SL+S     G    V+ I      LFAK
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG--KTVIAI------LFAK 672

Query: 312 MNDAE---------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             +A          YTC +  + K G+++      ++ +++  T D    N ++  Y   
Sbjct: 673 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 732

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
            ++E        +  +   P  TT+ +L  GY K+  +      ++  I  +   +PD
Sbjct: 733 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII--LNGILPD 788



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 137/350 (39%), Gaps = 8/350 (2%)

Query: 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSP 207
           S +  K S    ALM     C     P  Y+ ++ +Y+  G +    ++ + +     +P
Sbjct: 99  SLMSGKSSFVFGALMTTYRLCN--SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNP 156

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
            V T N  L +     +  +      E+ K KI PD  +++ L ++       EK++  +
Sbjct: 157 SVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM 216

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           ++MEK       V Y+++L  Y   G     + +   M S     +   Y  +I  L + 
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
               K   +  +        +    N L+  + N  ++ +A    N +++ G+ P + T+
Sbjct: 277 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L  G++ +G  ++ L+ F   +   +   P         + L +  + D A    + +
Sbjct: 337 NALIDGHISEGNFKEALKMF--YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRM 394

Query: 448 -RNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            RN   V    Y  ++    K G +   ++++  M KD +  D  T   L
Sbjct: 395 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSAL 444


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y    QL+K   + +  L+    P   TY L L A  +      AE    E++
Sbjct: 178 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 237

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  I P+   Y+      +K    EKA    + M++  CR N   ++ ++++Y       
Sbjct: 238 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 297

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             ++++ +M S+  K N   YT ++++  + G  EKAE +++E +      D    N L+
Sbjct: 298 SSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 357

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGS 413
            AY      + A   ++ +   G +P   ++ +L   Y + G     E V E  K+    
Sbjct: 358 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR--G 415

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
           +   +  H L+ AA+ +    G+    E ++  L  +G    T   N++L  YA+AG++
Sbjct: 416 MSPTMKSHMLLLAAHAR---SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRL 471



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 153/400 (38%), Gaps = 40/400 (10%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +L  +  + R  K++   + VCEW+  +   +     Y + ++   K R L+ AE+ +  
Sbjct: 141 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 200

Query: 133 LPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           L +    P  DT + LL +Y        AE ++ +M E G       YN  L+  +    
Sbjct: 201 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 260

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +K  ++ Q +K+     +  T+ L +          ++ K F E+K     P+  +Y+ 
Sbjct: 261 TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 320

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + + +  L EKA    +EM++     +  AY++L+  Y+  G       I+  M  + 
Sbjct: 321 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 380

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + + A Y  ++ +  + G  E AE +++E                              
Sbjct: 381 CEPDRASYNILVDAYGRAGLHEDAEAVFEE------------------------------ 410

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
                L  +G+ P   +  LL   + + G   +  E   +   S     PD   + A  N
Sbjct: 411 -----LKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKS--GLTPDTFALNAMLN 463

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
                G +D  E L   +   G      YN  +  Y +AG
Sbjct: 464 AYARAGRLDDMERLFAAMERRGDADVGTYNVAVNAYGRAG 503



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 97/245 (39%), Gaps = 3/245 (1%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   M+     +     Y + +D   +   
Sbjct: 342 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQ-HMGCEPDRASYNILVDAYGRAGL 400

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  FE L  +   P   S   LL ++ ++  +   E +M ++ + G        N 
Sbjct: 401 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 460

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           MLN Y   G+LD + ++   +++    DV TYN+ + A          E AF  +    +
Sbjct: 461 MLNAYARAGRLDDMERLFAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGL 520

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             D ++++     Y + +   +    ++EM    C  +      LL+  ++    ++V  
Sbjct: 521 AADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTA 580

Query: 301 IWKKM 305
           I + M
Sbjct: 581 IVRSM 585


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 16/353 (4%)

Query: 128  NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
            + F  + DK   P+  T + L++         +A  L+++M E GF+   + YN +LN Y
Sbjct: 970  SLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWY 1029

Query: 186  ISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK---ID 241
               G+     +++   + K    DV TYN+++    + +    + KA+L LKK +   I 
Sbjct: 1030 CKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNH---RSAKAYLLLKKMRKEMIS 1086

Query: 242  PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
            P+ ++Y+TL + ++K      AA    EM K     N V Y++L+  + ++G  +E LR+
Sbjct: 1087 PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRL 1146

Query: 302  WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
               M +   ++N+  Y  +++ L K  +FE A+ + +               +L+     
Sbjct: 1147 LDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCK 1206

Query: 362  RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
               L+ A      +   G+ P   T+  L  G+ + G ++   E   +     R  +  +
Sbjct: 1207 NGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM---YRSGLVLN 1263

Query: 422  RLI--TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            ++I  T  YN   + G++  A  +   +   GH +     N L+ +  + GK+
Sbjct: 1264 KIIYSTLIYN-FCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 1315



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 145/334 (43%), Gaps = 8/334 (2%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            TC+ +L S V++K++    +L  +MS+ G       +N ++N     G L K   +L+++
Sbjct: 951  TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 1010

Query: 202  KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++N   P +VTYN  L     +   + A +    +    I+ D  +Y+            
Sbjct: 1011 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 1070

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             KA   LK+M K     N V Y++L++ +   G      +++ +M       N   Y  +
Sbjct: 1071 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNAL 1130

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            I     +G+FE+A  + D  E+     +      LL       + E+A+    R+    +
Sbjct: 1131 IGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDM 1190

Query: 381  KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDID 438
               +  + +L  G  K G +++ ++     +G++ K    PD    ++  N     G+I 
Sbjct: 1191 VVGHIAYTVLIDGLCKNGMLDEAVQ----LVGNMYKDGVNPDVITYSSLINGFCRVGNIK 1246

Query: 439  GAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM 471
             A+ ++  +  +G V  + IY++L+  + + G +
Sbjct: 1247 SAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 1280



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/448 (20%), Positives = 182/448 (40%), Gaps = 9/448 (2%)

Query: 53   RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
            + A   +++ +E G        N ++    K  RYK A+E+ ++M  +  I+     Y V
Sbjct: 1001 KKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNV 1059

Query: 113  HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
             +D +      + A    + +  +M  P+  T + L++ +V+  K   A  +  +MS+  
Sbjct: 1060 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFD 1119

Query: 171  FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
                 + YN ++  +   G  ++  ++L  ++      + VTY   L         E A+
Sbjct: 1120 LSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAK 1179

Query: 230  KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
            +    ++   +    I+Y+ L     K  + ++A   +  M K     + + YSSL++ +
Sbjct: 1180 RLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGF 1239

Query: 290  TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              +G       I  +M      +N   Y+ +I +  + G   +A  +Y          D 
Sbjct: 1240 CRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADH 1299

Query: 350  RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               N+L+++     +L  AE F   +   G+ P   T++ +  GY   G        F  
Sbjct: 1300 FTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDD 1359

Query: 410  AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKA 468
             I   +   P      +    L + G++  A+  L  L    G V + +YN+LL    K+
Sbjct: 1360 MIKCGQH--PSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKS 1417

Query: 469  GKM--PLIIVERMQKDNVQMDAETQKVL 494
            G +   + + ++M ++NV  D+ T   L
Sbjct: 1418 GNLHEAVALFDKMVQNNVLPDSYTYSSL 1445



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 146/367 (39%), Gaps = 38/367 (10%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T   LL+   +++K   A+ L+E+M     +   + Y  +++    NG LD+  Q++  +
Sbjct: 1161 TYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNM 1220

Query: 202  -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT--------- 251
             K   +PDV+TY+  +       + ++A++    + ++ +  + I YSTL          
Sbjct: 1221 YKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 1280

Query: 252  ----SLYIKMELPEKAAT---------------TLKEMEKRTCRKNRVA-------YSSL 285
                 +Y  M      A                 L E EK  C  +R+        Y  +
Sbjct: 1281 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 1340

Query: 286  LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
            ++ Y ++G        +  M+      +   Y  ++  L K G   +A+   +    I G
Sbjct: 1341 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 1400

Query: 346  TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
              D  + N LLA       L  A + ++++V   + P   T+  L  G  +KG+    + 
Sbjct: 1401 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 1460

Query: 406  CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 464
             F  A+G      P+H + T   + L + G    A +    +   G    T  +N+++ +
Sbjct: 1461 LFGTAMGR-GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDS 1519

Query: 465  YAKAGKM 471
             ++ G+M
Sbjct: 1520 CSRRGQM 1526



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 54/285 (18%), Positives = 105/285 (36%), Gaps = 42/285 (14%)

Query: 201  LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +KK T PD V +N  + +C+ +     A   F  ++   + P+  +Y+ L   + K +  
Sbjct: 1502 MKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQAL 1561

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             +  +    M +     +++ + SL+   +  G  D  +++  KM+              
Sbjct: 1562 LRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMI-------------- 1607

Query: 321  ISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
                                  + GT  D    NIL+  Y    ++  A    N + T G
Sbjct: 1608 ----------------------MEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLG 1645

Query: 380  IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            + P   T+  +  G  KK    +      + + +    +P H       N +   GDI G
Sbjct: 1646 VFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLEN--GVIPKHAQYITLINGMCRVGDIQG 1703

Query: 440  AEHLLVTLRNAGHVSTEIYNS-LLRTYAKAGKM--PLIIVERMQK 481
            A  L   +   G  S E+  S ++R     GK    +++++ M +
Sbjct: 1704 AFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLR 1748



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
            T + L+H + ++ K AEA  L   M  CG     + YN ++    +NG      ++ +E+
Sbjct: 1757 TFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEM 1816

Query: 202  K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            + ++  P++ TY + + A ++ N+    EK   +L++
Sbjct: 1817 RHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQE 1853


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 129/284 (45%), Gaps = 7/284 (2%)

Query: 135 DKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           D MRG    P+  T + L+ ++ +  +   AE L+  M E G     + +N ++N     
Sbjct: 179 DDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKA 238

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+++   +M  E+ ++  +PD V+YN  ++          A   F E+ +  + PD +++
Sbjct: 239 GRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTF 298

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           ++L     +    E+A   + +M +R  R N   +++L+  +   G+ D+ L   K+M  
Sbjct: 299 TSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRE 358

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              + +   Y  +I+   KLG  ++A  +  E E+     D    + +L+ Y      + 
Sbjct: 359 CRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDS 418

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           A     +++ KG+ P   T+  L  G  ++ ++    E F+K +
Sbjct: 419 AFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKML 462



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 122/280 (43%), Gaps = 3/280 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A   F+ +  +   PD  S   L+  Y +     EA A+  +M++ G +   + +  
Sbjct: 241 MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS 300

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++     G L++   ++ +++ +    +  T+   +         + A  A  E+++ +
Sbjct: 301 LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECR 360

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P  + Y+ L + Y K+   ++A   + EME +  + + V YS++LS Y  +G  D   
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAF 420

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            + +KM+      +   Y+ +I  L +      A  ++++   +    D      L+  +
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                ++ A S ++ ++ KG+ P   T+ +L  G  K  +
Sbjct: 481 CKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSAR 520



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 140/331 (42%), Gaps = 10/331 (3%)

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWL-AACASQNDKET 227
           G+    L YN +L L +S+  L    ++L   L+   +P+V TYN+ + A CA    +E 
Sbjct: 115 GYAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
                 +++     P+ ++Y+TL + + +    + A   +  M +   R + V ++++++
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G  ++  +++ +M       +   Y  ++S   K G   +A  ++ E        
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D      L+ A      LE A +   ++  +G++    T+  L  G+ + G ++  L   
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAM 353

Query: 408 KKAIGS-VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           K+     ++  V  + ++   Y KL   G +D A  L+  +   G     + Y+++L  Y
Sbjct: 354 KEMRECRIQPSVVCYNVLINGYCKL---GRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410

Query: 466 AKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            K G       +  +M K  V  DA T   L
Sbjct: 411 CKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 128/337 (37%), Gaps = 58/337 (17%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T +AL+  + +N    +A   M++M EC      + YN ++N Y   G++D+  +++ E 
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 201 -----------------------------------LKKNTSPDVVTYNLWLAACASQNDK 225
                                              LKK   PD +TY+  +     +   
Sbjct: 392 EAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A + F ++ +  + PD  +Y+TL   + K    +KA +   EM K+    + V YS L
Sbjct: 452 GDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVL 511

Query: 286 LSLYTNMGYKDEVLRIWKKMM------------SLFAKMNDAEYTCVISSLVKL---GEF 330
           +   +      E  R+  K+             +L      AE+  V++ L      G  
Sbjct: 512 IDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLM 571

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +A+ +Y          D  V ++L+  +     +  A SF+ +L+  G  P  T+   L
Sbjct: 572 NQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISL 631

Query: 391 TWGYLKKGQ-------MEKVLECFKKAIGSVRKWVPD 420
             G  ++G        ++++L C   A     K + D
Sbjct: 632 VRGLFEEGMTVEADNVIQELLNCCSLADAETSKALID 668


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/415 (20%), Positives = 171/415 (41%), Gaps = 23/415 (5%)

Query: 66  GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS 125
           G  +     N ++  L +   +    E+ E M ++ DI+     + + ++ + K R +  
Sbjct: 300 GAVLESAACNSLLTGLAREGNFNRMNELMEKM-VEMDIQPNVVTFGILINHMCKFRRVDD 358

Query: 126 AENFFENLPDKMRG------------PDTC--SALLHSYVQNKKSAEAEALMEKM-SECG 170
           A    E    KM G            PD    + L+    +  +  E   LME+M S+ G
Sbjct: 359 ALEVLE----KMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKG 414

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAE 229
                + YN +++ +   G+++K  ++  E+ K+  +P+VVT N  +          +A 
Sbjct: 415 CAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAV 474

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             F+E ++  +  D ++Y+ L + +  +   EKA     EM K  C  + + Y +L+S +
Sbjct: 475 NFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGF 534

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           +  G   +   +  ++  L  + +   Y  +I    +  +F +   +  E E      D 
Sbjct: 535 SQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDT 594

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N L+A       L+ A+    +++  G+ P   T+  +   Y   G   + +E FK 
Sbjct: 595 ITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD 654

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLR 463
            + +  K  P+  +     N L +   +  A  L+  ++  G   +T  YN++ +
Sbjct: 655 -MKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFK 708



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 143/346 (41%), Gaps = 14/346 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L K+ R +  L + E M  Q      +  Y   +D   K   +   +  F+ + 
Sbjct: 387 NTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMN 446

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
            +   P+  T + L+    +  + + A     +    G     + Y  ++N + +    +
Sbjct: 447 KEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFE 506

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           K  ++  E LK   SPD + Y   ++  +       A     ELKK  I PD + Y+TL 
Sbjct: 507 KAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLI 566

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             + +     +    LKEME+   + + + Y++L++  +  G      ++ +KM+     
Sbjct: 567 GGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVV 626

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQL 365
              A Y  VI++    G   +A  I+ + ++ S     +VP      NIL+ +    N++
Sbjct: 627 PTVATYGAVINAYCLNGNGNEAMEIFKDMKAAS-----KVPPNTVIYNILINSLCKNNKV 681

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           + A S    +   G+ P  TT+  +  G   +  +EKV E   + I
Sbjct: 682 KSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMI 727



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 127/285 (44%), Gaps = 4/285 (1%)

Query: 123 LSSAENFF-ENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +SSA NFF E     M+G   T +AL++++       +A  L  +M + G     + Y  
Sbjct: 470 VSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYT 529

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +   G++     +L ELKK    PD V YN  +      N      +   E+++  
Sbjct: 530 LISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAG 589

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+Y+TL +   K    + A   +++M K         Y ++++ Y   G  +E +
Sbjct: 590 LKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAM 649

Query: 300 RIWKKMMSLF-AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            I+K M +      N   Y  +I+SL K  + + A ++ ++ +    T +    N +   
Sbjct: 650 EIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             +   LE    F +R++     P Y T E+LT      G++E++
Sbjct: 710 LRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERL 754



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 21/342 (6%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           C++LL    +         LMEKM E       + +  ++N      ++D   ++L+++ 
Sbjct: 308 CNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMS 367

Query: 203 K---------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTS 252
                     +  PDVV YN  +        ++        ++  K   PD I+Y+ L  
Sbjct: 368 GGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLID 427

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            + K    EK      EM K     N V  ++L+      G     +  + +      K 
Sbjct: 428 GFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKG 487

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   YT +I++   +  FEKA  +++E      + D  V   L++ +    ++  A    
Sbjct: 488 DAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVL 547

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL- 431
             L   GI+P    +  L  G+ +  +  +V E  K+   +  K  PD    T  YN L 
Sbjct: 548 AELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLK--PD----TITYNTLI 601

Query: 432 ---EEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAG 469
               + GD+  A+ ++  +  AG V T   Y +++  Y   G
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNG 643


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 154/400 (38%), Gaps = 40/400 (10%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +L  +  + R  K++   + VCEW+  +   +     Y + ++   K R L+ AE+ +  
Sbjct: 284 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 343

Query: 133 LPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           L +    P  DT + LL +Y        AE ++ +M E G       YN  L+  +    
Sbjct: 344 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 403

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            +K  ++ Q +K+     +  T+ L +          ++ K F E+K     P+  +Y+ 
Sbjct: 404 TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 463

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + + +  L EKA    +EM++     +  AY++L+  Y+  G       I+  M  + 
Sbjct: 464 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 523

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + + A Y  ++ +  + G  E AE +++E                              
Sbjct: 524 CEPDRASYNILVDAYGRAGLHEDAEAVFEE------------------------------ 553

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
                L  +G+ P   +  LL   + + G   +  E   +   S     PD   + A  N
Sbjct: 554 -----LKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKS--GLTPDTFALNAMLN 606

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
                G +D  E LL  +   G      YN  +  Y +AG
Sbjct: 607 AYARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAG 646



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y    QL+K   + +  L+    P   TY L L A  +      AE    E++
Sbjct: 321 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 380

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  I P+   Y+      +K    EKA    + M++  CR N   ++ ++++Y       
Sbjct: 381 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 440

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             ++++ +M S+  K N   YT ++++  + G  EKAE +++E +      D    N L+
Sbjct: 441 SSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 500

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGS 413
            AY      + A   ++ +   G +P   ++ +L   Y + G     E V E  K+    
Sbjct: 501 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR--G 558

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
           +   +  H L+ AA+ +    G+    E ++  L  +G    T   N++L  YA+AG++
Sbjct: 559 MSPTMKSHMLLLAAHAR---SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRL 614



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 3/245 (1%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ GH    Y  N ++    +    + A E+   M+     +     Y + +D   +   
Sbjct: 485 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQ-HMGCEPDRASYNILVDAYGRAGL 543

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
              AE  FE L  +   P   S   LL ++ ++  +   E +M ++ + G        N 
Sbjct: 544 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 603

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           MLN Y   G+LD + ++L  +++    DV TYN+ + A          E AF  +    +
Sbjct: 604 MLNAYARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGL 663

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
             D ++++     Y + +   +    ++EM    C  +      LL+  ++    ++V  
Sbjct: 664 AADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTA 723

Query: 301 IWKKM 305
           I + M
Sbjct: 724 IVRSM 728


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 5/286 (1%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +  +YN+ + +       + A +  +++      PD +SYST+   Y  +   +KA   +
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            +M+ +  + NR  Y+S++ L   +G   E  ++ ++MMS     ++  YT +I    KL
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G    A   +DE  S   + D      L+  +    ++   ++ ++ ++++G+KP   T+
Sbjct: 377 GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L   Y K G+M        + +       P+     A  + L + G++D A  LL  +
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQ--MGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 448 RNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           R  G  ++  IYNS++    KAG +   + +++ M+   +  DA T
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 8/341 (2%)

Query: 104 KLVSGDYAVHLDLISKI-RG--LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAE 158
           K +S DY  +  LI    +G  +   +N F  +  +   PD  T + L+  Y +  +   
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           A +L  +M + G     + Y  +++    +G+LD   ++L E+ KK    +V  YN  + 
Sbjct: 452 AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 + E A K   E++   IDPD I+Y+T+   Y ++   +KA   L+EM  R  + 
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
             V ++ L++ +  +G  ++  R+   M+      +   Y  ++              IY
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIY 631

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
               +     D    NIL+  +     L+ A   Y  ++ KG  P  T++  L   + KK
Sbjct: 632 KRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
            +  +  E F++  G     V D  +     +   E+GD++
Sbjct: 692 RKFXEARELFEEMRG--HGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 175/433 (40%), Gaps = 27/433 (6%)

Query: 51  AKRSAAITM--RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           A  S  I M  + + E G + +    N I+  L +L + K A      + +Q D +  + 
Sbjct: 236 ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEA----HRLLMQMDFRSSTP 291

Query: 109 D---YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
           D   Y+  +D    +  L  A    +++  K   P+  T ++++    +  KS EAE ++
Sbjct: 292 DVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVL 351

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQ 222
            +M     +   + Y  +++ +   G +    +   E L K  SPD +TY   +      
Sbjct: 352 REMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQG 411

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                 +  F E+    + PD ++Y+TL  +Y K      A +   EM +     N V Y
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
            +L+      G  D    +  +M     ++N   Y  +++ + K G  E+A  +  E E 
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D      ++ AY     ++ A      ++ +G++P   T+ +L  G+   G +E 
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591

Query: 403 VLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHV-ST 455
                 + +G +  +  VPD       YN L +Q      ++    +   +RN G    +
Sbjct: 592 G----DRLLGWMLEKGIVPD----AITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643

Query: 456 EIYNSLLRTYAKA 468
             YN L++ + KA
Sbjct: 644 NTYNILIKGHCKA 656



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 89/203 (43%), Gaps = 3/203 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + ++ +Y +     +A  L+++M + G     + +N ++N +   G L+   ++
Sbjct: 536 PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRL 595

Query: 198 LQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L   L+K   PD +TYN  +     +N   T  K +  ++   + PD  +Y+ L   + K
Sbjct: 596 LGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCK 655

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A    KEM ++       +Y++L+  +       E   ++++M       +   
Sbjct: 656 ARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEI 715

Query: 317 YTCVISSLVKLGEFEKAENIYDE 339
           Y   +    + G+ E   N+ DE
Sbjct: 716 YNFFVDMCYEEGDVEITLNLCDE 738


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 137 MRGPDTCSALLHSYVQNKKSAE-AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           M G  + +A+L + ++ K+S + AE + ++M E G       YN ++  + + G L+   
Sbjct: 164 MPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGL 223

Query: 196 QMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
               E+++N   P+VVTYN  + A         A K    +    ++P+ ISY+ + +  
Sbjct: 224 FFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGL 283

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +    ++ +  L+EM KR    +RV +++L++ Y N+G   + L +  +M+      N 
Sbjct: 284 CREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNV 343

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +I+S+ K G   +A    D+        + R    L+  +  +  L+ A      
Sbjct: 344 VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKE 403

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +V  G  P   T+  L  G+   G+ME      ++ I   R ++PD
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE--RGFIPD 447



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 155/357 (43%), Gaps = 6/357 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+R +  A      +  K   P+  S   +++   +  +  E   ++E+MS
Sbjct: 241 YNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMS 300

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           +  ++   + +N ++N Y + G   +   +  E+ KN  SP+VVTY   + +     +  
Sbjct: 301 KRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLN 360

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   +++   + P+  +Y+TL   + +    ++A   +KEM +       + Y++L+
Sbjct: 361 RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALI 420

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + +  +G  ++   + ++M+      +   Y+ +IS   +  E EKA  +  E  +   +
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    + L+     + +L      +  +++ G+ P   T+  L   Y  +G ++K L  
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
             + I   + + PD        N   +Q     A+ LL+ L     V  EI YN+L+
Sbjct: 541 HDEMIQ--KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 143/336 (42%), Gaps = 24/336 (7%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL++ +    +  +A  L+++M E GF+   + Y+ +++ +  N +L+K  Q+  E+
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEM 474

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  SPDV TY+  +     Q         F E+    + PD ++Y++L + Y      
Sbjct: 475 VAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDL 534

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA     EM ++    + V Y+ L++ +       E  R+  K++   +  N+  Y  +
Sbjct: 535 DKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +   L EF+ A                     L+  +  +  +  A+     ++ KG 
Sbjct: 595 IDNCNNL-EFKSAL-------------------ALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDG 439
           K     + ++  G+ K G +EK    +K+ + S   + P    I A    L  +G +++ 
Sbjct: 635 KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHS--GFAPHSVTIMALAKSLYHEGKEVEL 692

Query: 440 AEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLII 475
            + L  TL++       +   L+   +K G M  + 
Sbjct: 693 NQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVF 728


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 48/372 (12%)

Query: 142 TCSALLHSYVQNK-KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T + ++H Y++ K K   A  L+E M E G     + YN ++N  +++G+L+   ++L +
Sbjct: 19  TYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDD 78

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K++  S ++VTY   +   A+    +   K F E+K     P+  +Y+ L   Y +  L
Sbjct: 79  MKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGL 138

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A     EM+   C K+   Y+  +++Y   G  +++ R+  +M +     +   Y  
Sbjct: 139 FKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNT 198

Query: 320 VISSLVKLGEFEKAENIYDE--------------------------------WESISGTG 347
           ++    K   F KA  I  E                                +E++   G
Sbjct: 199 LLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKG 258

Query: 348 DPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              VPNI     +L+ Y        A   ++ ++  G  PC   +  L   Y   G  ++
Sbjct: 259 --VVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQE 316

Query: 403 VLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
            L CF+     +RK   VPD ++ TA  +   + G    AE L   +   G V   I Y 
Sbjct: 317 ALACFQ----DMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYG 372

Query: 460 SLLRTYAKAGKM 471
            L+R +A AG++
Sbjct: 373 ILVRAFANAGRL 384



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMEL 259
           +K      VVTY + +     Q  K       LE +K++   PD I Y+ L +  +    
Sbjct: 9   MKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGR 68

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            E A   L +M++     N V Y++L+  Y N G   +  +++++M       N   Y  
Sbjct: 69  LEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNA 128

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I    + G F++A  +YDE + +    D    NI +A Y  R  LE  E   + + TKG
Sbjct: 129 LIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKG 188

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWVPDHRLITAAYNKLEEQGDID 438
           + P   T+  L   Y KK    K  E  ++      R  +  + ++ ++  K  EQ  + 
Sbjct: 189 VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK--EQ-SVA 245

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            A  L   L++ G V   + Y+++L  Y + G
Sbjct: 246 EATQLFENLKSKGVVPNIVTYSAMLSLYGRHG 277



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 133 LPDKMRGPDTCSALLHSY-----VQNKKS--AEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           L D+M G   C+  +H+Y     +  K+    + E L+++M   G     + YN +L++Y
Sbjct: 145 LYDEMDGVG-CAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVY 203

Query: 186 ISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
                  K  ++L+E+ +    P++ TYN+ L++   +     A + F  LK   + P+ 
Sbjct: 204 AKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNI 263

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++YS + SLY +  L  +AA    EM +  C    +AYS L+  Y + G   E L  ++ 
Sbjct: 264 VTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQD 323

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M       +   YT ++ +  K G   +AE +Y E        D     IL+ A+ N  +
Sbjct: 324 MRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383

Query: 365 L 365
           L
Sbjct: 384 L 384


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 178/417 (42%), Gaps = 23/417 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++L SK   +  AE +F+++      P+    + L+  +     + EA +  + M 
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 168 ECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
           E G +     Y+ +++    NG+  + +   L+ LK    PDV  YN  ++    + D E
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + + E+    I+P+ + Y+TL +   K+    KA     E+E++    + V YS+++
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G   E  +++ +M+S     +   Y  +I    K G  EKA +++ E +  S  
Sbjct: 739 DGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-V 797

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
           G     N L+ ++    ++  A   ++ +V K + P   T+ +L   Y K   ME+  + 
Sbjct: 798 GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 857

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
           F       R  +P+    T+      + G+      L   +   G     I Y  +   Y
Sbjct: 858 FLDM--ETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 915

Query: 466 AKAGK----MPLI---IVERMQKDNVQMDA---------ETQKVLKITSEMPVSEVS 506
            K GK    + L+   +VE ++ ++   DA         +   VL++ SEM   E+S
Sbjct: 916 CKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELS 972



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 145/342 (42%), Gaps = 42/342 (12%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELK 236
           Y +++  +   G + K   +L E++K   P++ TYN ++   C +    E  E   L ++
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMME 304

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  + PD  +Y+ L   + K +  ++A    + M       NR  Y++L+  +   G  +
Sbjct: 305 K-GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIE 363

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE----------WES---I 343
           E LRI  +M++   K+N   Y  +I  + K GE  KA ++++E          W     I
Sbjct: 364 EALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLI 423

Query: 344 SG----------------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
            G                      T  P   ++L++   + + L+ A    ++++  G+K
Sbjct: 424 DGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK 483

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P    +  L   Y+++ + E  +E  K  I +    +PD          L     ++ A+
Sbjct: 484 PNVFMYGTLIKAYVQESRYEMAIELLKIMIAN--GVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 442 HLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKD 482
            LLV +   G   +   Y + +  Y+K+G++   + ER  KD
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ--VAERYFKD 581



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 140/335 (41%), Gaps = 6/335 (1%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P T S L+     +    +A  ++++M   G       Y  ++  Y+   + +   ++L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 200 ELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +  N   PD+  YN  +         E A+   +++ +  I P+  +Y    +LY K  
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A    K+M       N V Y+ L+  + ++G   E L  +K M+      +   Y+
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYS 630

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I SL K G+ ++A  ++ ++       D  + N L++ +     +E A   Y+ ++  
Sbjct: 631 AIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN 690

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           GI P    +  L  G  K G++ K  E F +     +  VPD    +   +   + G++ 
Sbjct: 691 GINPNIVVYNTLINGLCKLGEVTKARELFDEI--EEKDLVPDVVTYSTIIDGYCKSGNLT 748

Query: 439 GAEHLLVTLRNAGHVSTE--IYNSLLRTYAKAGKM 471
            A  L   + + G +S +  IY  L+    K G +
Sbjct: 749 EAFKLFDEMISKG-ISPDGYIYCILIDGCGKEGNL 782



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 141/332 (42%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +A++    +  + A+A +L  +M   G       YN +++ Y+ +  + K  ++L E+
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  +P   TY++ ++     +D + A +   ++ +  + P+   Y TL   Y++    
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A   LK M       +   Y+ L+         +E   +   M     K N   Y   
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+   K GE + AE  + +  S     +  +  IL+  + +      A S +  ++ KG+
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P    +  +     K G+ ++ +  F K + +    VPD  L  +  +   ++GDI+ A
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT--GVVPDVFLYNSLISGFCKEGDIEKA 680

Query: 441 EHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             L    L N  + +  +YN+L+    K G++
Sbjct: 681 SQLYDEMLHNGINPNIVVYNTLINGLCKLGEV 712


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 41/325 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+H   +N K  EA  +  ++ E G L     YN +++     G +DK  Q+L+E+
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  +PD+VTYN+ +       + E A+  F +++   + P+ ++Y+ +   Y K + P
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 261 EKAATTLKEMEKR---------------TCRKNR-------------------VAYSSLL 286
             A   L+EM  R                C++ +                   V++++L+
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 781

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G   E   + ++M+      N   YT +I    K G   +A+ ++ E +  +  
Sbjct: 782 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 841

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
              +    LL  Y N   +    + +  +V KGI+P   T+ ++   Y ++G    V+E 
Sbjct: 842 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGN---VMEA 898

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKL 431
            K     + K +P   +  AAY+ L
Sbjct: 899 CKLKDEILVKGMP---MSVAAYDAL 920



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 10/368 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +  + + R L  A     ++ DK   PD  T   L++ +   K+S EA+ ++ +M 
Sbjct: 253 YNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI 312

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G    P+ YN +++ ++  G +++  ++  E+       +++ +N  L         E
Sbjct: 313 DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME 372

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   E+ +  ++PD  +YS L   + + +   +A   L EM+KR      + YS ++
Sbjct: 373 KALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVII 432

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +     G       I ++M+    K N   YT ++++  K G  E++  I +        
Sbjct: 433 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 492

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+  +    ++E A ++   ++ + ++P   T+     GY K G+ME     
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 552

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA---EHLLVTLRNAGHVSTEIYNSLLR 463
           F + +      +P+  + TA      ++G++  A      +++ R    V T  Y+ L+ 
Sbjct: 553 FNEMLSC--GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT--YSVLIH 608

Query: 464 TYAKAGKM 471
             ++ GKM
Sbjct: 609 GLSRNGKM 616



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 7/286 (2%)

Query: 207 PDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           PDV TY N+  A C   N K+ A++  LE+ +    P+ ++Y+ +     +  L ++A  
Sbjct: 213 PDVYTYTNMISAHCKVGNVKD-AKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIE 271

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
             + M  +    +   Y  L++ +       E   +  +M+ +  K     Y  +I   +
Sbjct: 272 LKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFM 331

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           + G+ E+A  I DE  +     +  + N LL       ++E A      ++ KG++P   
Sbjct: 332 RQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQ 391

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T+ LL  G+ +   M +  E   +     RK  P     +   N L   G++ G   +L 
Sbjct: 392 TYSLLIEGHCRGQNMARAFELLDEM--KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILR 449

Query: 446 TL-RNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDA 488
            +  N    +  +Y +L+  +AK G++    +I+ERM++  +  D 
Sbjct: 450 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 495



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 147/336 (43%), Gaps = 12/336 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C++LL   ++  K      + + M     L     Y +M++ +   G +    ++L E+
Sbjct: 182 SCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM 241

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID----PDWISYSTLTSLYIK 256
            +K  SP++VTYN+ +         + A    +ELK++ +D    PD  +Y  L + +  
Sbjct: 242 GEKGCSPNLVTYNVIIGGLCRARLLDEA----IELKRSMVDKGLVPDLYTYDILINGFCM 297

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +   +A   L EM     +   + Y++L+  +   G  ++  RI  +M++   + N   
Sbjct: 298 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 357

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +++ + K G+ EKA  I  E        D +  ++L+  +     +  A    + + 
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            + + P   T+ ++  G  + G ++      ++ + +  K  P+  + T       ++G 
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTLMTAHAKEGR 475

Query: 437 IDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
           ++ +  +L  +R  G +     YNSL+  + KA +M
Sbjct: 476 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 511



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 130/307 (42%), Gaps = 8/307 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K   +  A+N F+++  +   P+  T +A++  Y ++K    A  L+E+M 
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 732

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G       YN +LN      + +K   + QE+ +      V++N  +         + 
Sbjct: 733 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQE 792

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A     E+ + +  P+ ++Y++L     K  +  +A     EM++R        Y+SLL 
Sbjct: 793 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 852

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y N+G   EV  ++++M++   + +   Y  +I +  + G   +A  + DE   I   G
Sbjct: 853 GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE---ILVKG 909

Query: 348 DP---RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            P      + L+ A   + +        N +   G +    T  ++  G+   G M++  
Sbjct: 910 MPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAA 969

Query: 405 ECFKKAI 411
           E  +  +
Sbjct: 970 EVLRSMV 976



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/331 (19%), Positives = 143/331 (43%), Gaps = 6/331 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + LL+   +  K  +A  +M++M E G       Y+ ++  +     + +  ++L E+KK
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              +P V+TY++ +       + +       E+    + P+ + Y+TL + + K    E+
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 478

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           +   L+ M ++    +   Y+SL+  +      +E      +M+    + N   Y   I 
Sbjct: 479 SRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID 538

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K GE E A+  ++E  S     +  +   L+  +     +  A S +  ++++ +  
Sbjct: 539 GYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ 598

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ +L  G  + G+M +    F +     +  +P+     +  +   +QG++D A  
Sbjct: 599 DVQTYSVLIHGLSRNGKMHEAFGIFSEL--QEKGLLPNAFTYNSLISGSCKQGNVDKASQ 656

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           LL  +   G ++ +I  YN L+    KAG++
Sbjct: 657 LLEEMCIKG-INPDIVTYNILIDGLCKAGEI 686



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 161/407 (39%), Gaps = 44/407 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           + L+ ++ +  +  E+  ++E+M E G L     YN ++  +    ++++    L E L+
Sbjct: 464 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P+  TY  ++   +   + E A++ F E+    + P+   Y+ L   + K     +
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 583

Query: 263 AATTLK-----------------------------------EMEKRTCRKNRVAYSSLLS 287
           A +  +                                   E++++    N   Y+SL+S
Sbjct: 584 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 643

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G  D+  ++ ++M       +   Y  +I  L K GE E+A+N++D+ E    T 
Sbjct: 644 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +      ++  Y        A      ++ +G+ P    + ++     K+ + EK L+ F
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 763

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
           ++ +            +   Y K    G +  A HLL  +     +   + Y SL+    
Sbjct: 764 QEMLEKGFASTVSFNTLIEGYCK---SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 820

Query: 467 KAGKMPLI--IVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           KAG M     +   MQ+ NV   A+T   L     +   +SEVS++F
Sbjct: 821 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 867


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 3/245 (1%)

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AE  F E++   + P   +Y+ L   Y+K  L + A   + EME+     N   YS L+ 
Sbjct: 324 AEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLID 383

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y N G  +    + K+M +   + N   ++ ++SS    GE++K+  +  E E+     
Sbjct: 384 AYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRP 443

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D    N+++  +   N L+ A + ++R++++GI+P   TW  L   + + G+ ++  E F
Sbjct: 444 DRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELF 503

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
           ++ +     + P +       N   +Q   D  ++LL  +R+ G V   + Y +L+  Y 
Sbjct: 504 EEMMEG--GYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYG 561

Query: 467 KAGKM 471
           K+G+ 
Sbjct: 562 KSGRF 566



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 127/289 (43%), Gaps = 4/289 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA I +++ +      + Y  +RI+   R    ++ + +V   ME    ++     Y V 
Sbjct: 393 SARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREME-NSGVRPDRVFYNVM 451

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K   L  A   F+ +  +   PDT +   L+  + +  K   AE L E+M E G+
Sbjct: 452 IDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGY 511

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
             C   +N M+N +    + D V  +L  ++ +   P+ VTY   +           A +
Sbjct: 512 SPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIE 571

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++K   + P    Y+ L + Y +  L E+A +  + M     + + +A +SL++ + 
Sbjct: 572 CLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFG 631

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                 E   + + M     K +   YT ++ +L+++ +F+K  ++Y+E
Sbjct: 632 EDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEE 680



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/376 (19%), Positives = 152/376 (40%), Gaps = 45/376 (11%)

Query: 126 AENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           AE  FE + D    P T   +ALL  YV+     +AE ++ +M   G             
Sbjct: 324 AEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSG------------- 370

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
                                 SP+  TY+  + A  +    E+A     E++ + + P+
Sbjct: 371 ---------------------VSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPN 409

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
              +S + S Y      +K+   L+EME    R +RV Y+ ++  +      D  +  + 
Sbjct: 410 AYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFD 469

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP--RVPNILLAAYIN 361
           +M+S   + +   +  +I    + G+ ++AE +++E   + G   P     NI++ ++ +
Sbjct: 470 RMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEM--MEGGYSPCNTTFNIMINSFGD 527

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           + + +  ++    + ++G+ P   T+  L   Y K G+    +EC      +  K  P  
Sbjct: 528 QERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLK--PSS 585

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYA--KAGKMPLIIVER 478
            +  A  N   ++G  + A      +R  G   S    NSL+  +   +       +++ 
Sbjct: 586 TMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQY 645

Query: 479 MQKDNVQMDAETQKVL 494
           M++++++ D  T   L
Sbjct: 646 MKENDLKPDVVTYTTL 661



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 127/312 (40%), Gaps = 10/312 (3%)

Query: 189 GQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           GQ +K+ +  L   ++N +P  +TYN  ++ACA  ND E A      +++     D+++Y
Sbjct: 179 GQSEKLYEAFLLSQRQNLTP--LTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNY 236

Query: 248 STLTSLYIKMELPEKAATT--LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           S +    ++    + A      +E+E      +    + ++  +   G   + L     +
Sbjct: 237 SLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVV 296

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                 +  A    VI +L   G   +AE I++E          R  N LL  Y+    L
Sbjct: 297 QGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLL 356

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           + AE   + +   G+ P   T+  L   Y   G+ E      K+   S  +  P+  + +
Sbjct: 357 KDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQ--PNAYVFS 414

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKD 482
              +   ++G+   +  +L  + N+G     + YN ++ T+ K   +   +   +RM  +
Sbjct: 415 RILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSE 474

Query: 483 NVQMDAETQKVL 494
            ++ D  T   L
Sbjct: 475 GIEPDTVTWNTL 486


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 5/286 (1%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +  +YN+ + +       + A +  +++      PD +SYST+   Y  +   +KA   +
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLM 316

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            +M+ +  + NR  Y+S++ L   +G   E  ++ ++MMS     ++  YT +I    KL
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKL 376

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G    A   +DE  S   + D      L+  +    ++   ++ ++ ++++G+KP   T+
Sbjct: 377 GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L   Y K G+M        + +       P+     A  + L + G++D A  LL  +
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQ--MGMTPNIVTYGALIDGLCKHGELDTANELLDEM 494

Query: 448 RNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           R  G  ++  IYNS++    KAG +   + +++ M+   +  DA T
Sbjct: 495 RKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 145/341 (42%), Gaps = 8/341 (2%)

Query: 104 KLVSGDYAVHLDLISKI-RG--LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAE 158
           K +S DY  +  LI    +G  +   +N F  +  +   PD  T + L+  Y +  +   
Sbjct: 392 KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           A +L  +M + G     + Y  +++    +G+LD   ++L E+ KK    +V  YN  + 
Sbjct: 452 AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 + E A K   E++   IDPD I+Y+T+   Y ++   +KA   L+EM  R  + 
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
             V ++ L++ +  +G  ++  R+   M+      +   Y  ++              IY
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIY 631

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
               +     D    NIL+  +     L+ A   Y  ++ KG  P  T++  L   + KK
Sbjct: 632 KRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
            ++ +  E F++  G     V D  +     +   E+GD++
Sbjct: 692 KKILEARELFEEMRG--HGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 175/433 (40%), Gaps = 27/433 (6%)

Query: 51  AKRSAAITM--RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
           A  S  I M  + + E G + +    N I+  L +L + K A      + +Q D +  + 
Sbjct: 236 ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEA----HRLLMQMDFRSSTP 291

Query: 109 D---YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALM 163
           D   Y+  +D    +  L  A    +++  K   P+  T ++++    +  KS EAE ++
Sbjct: 292 DVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVL 351

Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQ 222
            +M     +   + Y  +++ +   G +    +   E L K  SPD +TY   +      
Sbjct: 352 REMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQG 411

Query: 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 282
                 +  F E+    + PD ++Y+TL  +Y K      A +   EM +     N V Y
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
            +L+      G  D    +  +M     ++N   Y  +++ + K G  E+A  +  E E 
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D      ++ AY     ++ A      ++ +G++P   T+ +L  G+   G +E 
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591

Query: 403 VLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHV-ST 455
                 + +G +  +  VPD       YN L +Q      ++    +   +RN G    +
Sbjct: 592 G----DRLLGWMLEKGIVPD----AITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643

Query: 456 EIYNSLLRTYAKA 468
             YN L++ + KA
Sbjct: 644 NTYNILIKGHCKA 656


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 67/389 (17%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--------------- 188
           ++L+H+Y +++  + A  L +KM +CG     L YN  +    SN               
Sbjct: 346 NSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKA 405

Query: 189 --------------------------GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACAS 221
                                     G+ DK  +++ E+  K   PD  TY+  +     
Sbjct: 406 YSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLC- 464

Query: 222 QNDKETAEKAFL---ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
             D    EKAFL   E+KK  I P   +Y+ L   + K  L ++A     EM +  C  N
Sbjct: 465 --DASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPN 522

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
            V Y+SL+  Y       +  ++++ M+   +K N   YT +I    K G+ +KA  IY 
Sbjct: 523 VVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYA 582

Query: 339 EWES-ISGT----------GDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKP 382
             +  I  +           D   PNI     L+      N++E A    + +   G +P
Sbjct: 583 RMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEP 642

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               ++ L  G+ K G++E   E F K   S R + P+    ++  N L ++  +D    
Sbjct: 643 NQIVYDALIDGFCKTGKLENAQEVFVKM--SERGYCPNLYTYSSLINSLFKEKRLDLVLK 700

Query: 443 LLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
           +L   L N+   +  IY  ++    K GK
Sbjct: 701 VLSKMLENSCTPNVVIYTDMIDGLCKVGK 729



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 167/415 (40%), Gaps = 53/415 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A N+F+ +      P+  T ++L+H+Y++ +K  +A  L E M 
Sbjct: 491 YTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMML 550

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-----------------SPDVV 210
             G     + Y  +++ +   GQ+DK  Q+   ++ +                  +P+++
Sbjct: 551 LEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNII 610

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      N  E A +    +     +P+ I Y  L   + K    E A     +M
Sbjct: 611 TYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKM 670

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            +R    N   YSSL++        D VL++  KM+      N   YT +I  L K+G+ 
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT 730

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           E+A  +  + E +    +      ++  +    ++E     Y  + +KG  P + T+ +L
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790

Query: 391 TWGYLKKGQME----------------------KVLECFKK----AIG-----SVRKWVP 419
                  G ++                      K++E F +    +IG     S  + VP
Sbjct: 791 INHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVP 850

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE---IYNSLLRTYAKAGKM 471
              L     +   + G ++GA +LL  + ++  ++     +Y SL+ + + A K+
Sbjct: 851 VESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKV 905



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/349 (20%), Positives = 133/349 (38%), Gaps = 26/349 (7%)

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN------TSPDVVTYNLWL 216
           + ++ + G+   P  YN ++ +++   +LD    + +E+  +       +     Y+L  
Sbjct: 193 LGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCK 252

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
           A             A   L+K +  PD + Y+ + S   +  L ++A   L  M   +C 
Sbjct: 253 AG--------RCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCI 304

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N V Y  LLS     G      RI   MM+     N   +  ++ +  K  ++  A  +
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQ------LEMAESFYNRLVTKGIKPCYTTWELL 390
           + +           + NI + +  +  +      LE+AE  Y+ ++  G+          
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
                  G+ +K  E   + +   + +VPD    +     L +   ++ A  L   ++  
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMS--KGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKN 482

Query: 451 GHV-STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498
           G V S   Y  L+ ++ KAG   LI   R   D +  D  T  V+  TS
Sbjct: 483 GIVPSVYTYTILIDSFCKAG---LIQQARNWFDEMLRDNCTPNVVTYTS 528



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 14/336 (4%)

Query: 170 GFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVV--TYNLWLAACASQNDKE 226
           G+   P+ YN ++ L   N    D+V        ++   +++    N  +  C       
Sbjct: 128 GYSHTPVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWN 187

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +    LK         +Y+ L  ++++ +  + A    +EM     R +        
Sbjct: 188 VALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFA 247

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   + L + +K    F   +   Y  ++S L +   F++A +I D   SIS  
Sbjct: 248 YSLCKAGRCGDALSLLEK--EEFVP-DTVFYNRMVSGLCEASLFQEAMDILDRMRSISCI 304

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            +     ILL+  + + QL   +   + ++T+G  P    +  L   Y K        + 
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 407 FKKAI--GSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVSTEI-YNSL 461
           FKK I  G    ++  +  I +  +  E  G   ++ AE     + + G V  ++  ++ 
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 462 LRTYAKAGKMPL---IIVERMQKDNVQMDAETQKVL 494
            R    AGK      II E M K  V  D+   KV+
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVI 460


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELK 202
           +A++  + +  +   A  ++ +M   GFL   + YN M+    +  +L    ++L Q L 
Sbjct: 141 NAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLL 200

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N  P V+TY + + A   +     A K   E+    + PD  +Y+ +     K  + E+
Sbjct: 201 DNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVER 260

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           AA  +  +  + C+ + ++Y+ LL  + N G  DE  ++  +M S   + N   Y+ +IS
Sbjct: 261 AAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILIS 320

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           SL + G  ++A ++         T D    + L++A     +L++A    + +++ G  P
Sbjct: 321 SLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLP 380

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               +  +     K G   + LE F K  G      P+        + L   GD   A  
Sbjct: 381 DIVNYNTILAALCKNGNANQALEIFNKLRG--MGCPPNVSSYNTMISALWSCGDRSRALG 438

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           ++  + + G    EI YNSL+    + G
Sbjct: 439 MVPAMISKGVDPDEITYNSLISCLCRDG 466



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 147/344 (42%), Gaps = 5/344 (1%)

Query: 65  EGHT-VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           E HT    +  N ++    K+ R + A +V   M+ +  +  +   Y + +  +   R L
Sbjct: 130 ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIV-TYNIMIGSLCNRRKL 188

Query: 124 SSAENFFENL--PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
             A    + L   + M    T + L+ + +      EA  L+E+M   G L     YN +
Sbjct: 189 GLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +      G +++  +++  L  K   PDV++YN+ L A  +Q   +  EK   E+     
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
           +P+ ++YS L S   +    ++A + LK M ++    +  +Y  L+S     G  D  + 
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           I   M+S     +   Y  ++++L K G   +A  I+++   +    +    N +++A  
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 428

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           +      A      +++KG+ P   T+  L     + G +E+ +
Sbjct: 429 SCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 122/282 (43%), Gaps = 3/282 (1%)

Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            ++K  ++++ L+ +T PDV  YN  ++     N  E A +    +K     PD ++Y+ 
Sbjct: 118 NIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNI 177

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +            A   L ++    C    + Y+ L+      G  +E +++ ++M++  
Sbjct: 178 MIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG 237

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              +   Y  +I  + K G  E+A  +     S     D    NILL A++N+ + +  E
Sbjct: 238 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGE 297

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
                + ++G +P   T+ +L     + G++++ +   K  I   ++  PD        +
Sbjct: 298 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE--KELTPDTYSYDPLIS 355

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            L ++G +D A  ++  + + G +   + YN++L    K G 
Sbjct: 356 ALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 125/284 (44%), Gaps = 11/284 (3%)

Query: 120 IRGLSS------AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRG+        A     +L  K   PD  S   LL +++   K  E E L+ +M   G 
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y+ +++     G++D+   +L+  ++K  +PD  +Y+  ++A   +   + A  
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +      PD ++Y+T+ +   K     +A     ++    C  N  +Y++++S   
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 428

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G +   L +   M+S     ++  Y  +IS L + G  E+A  + D+ E  SG     
Sbjct: 429 SCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ-SGFRPTV 487

Query: 351 VP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           +  NI+L       +++ A   +  ++ KG +P  TT+ LL  G
Sbjct: 488 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEG 531



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/361 (18%), Positives = 149/361 (41%), Gaps = 4/361 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           +A   + + K  G        N ++  L   ++   AL+V + + L   +  V   Y + 
Sbjct: 155 AATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVI-TYTIL 213

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++      G++ A    E +  +   PD  T +A++    +      A  L+  ++  G 
Sbjct: 214 IEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGC 273

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + YN +L  +++ G+ D+  +++ E+  +   P+ VTY++ +++       + A  
Sbjct: 274 KPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAIS 333

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               + + ++ PD  SY  L S   K    + A   +  M    C  + V Y+++L+   
Sbjct: 334 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 393

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  ++ L I+ K+  +    N + Y  +IS+L   G+  +A  +     S     D  
Sbjct: 394 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEI 453

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             N L++       +E A    + +   G +P   ++ ++  G  K  +++  +  F + 
Sbjct: 454 TYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 513

Query: 411 I 411
           I
Sbjct: 514 I 514



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 101/218 (46%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + +   +  A +  + + +K   PDT S   L+ +  +  +   A  +M+ M 
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 374

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L   + YN +L     NG  ++  ++  +L+     P+V +YN  ++A  S  D+ 
Sbjct: 375 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 434

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A      +    +DPD I+Y++L S   +  L E+A   L +ME+   R   ++Y+ +L
Sbjct: 435 RALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 494

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
                +   D+ + ++ +M+    + N+  Y  +I  +
Sbjct: 495 LGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQ----LDKVPQ 196
           + +L +  +N  + +A  +  K+   G   CP     YN M++   S G     L  VP 
Sbjct: 386 NTILAALCKNGNANQALEIFNKLRGMG---CPPNVSSYNTMISALWSCGDRSRALGMVPA 442

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M+    K   PD +TYN  ++        E A     +++++   P  ISY+ +     K
Sbjct: 443 MIS---KGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 499

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +   + A     EM ++ CR N   Y  L+      G++ E + +   + S
Sbjct: 500 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 550


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 156/380 (41%), Gaps = 38/380 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + K+  +  A + F  +P K   PD  T S L++   + ++  EA  L+++M 
Sbjct: 201 YNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQ 260

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G L  P+ +N +++    NG L +  +++  +  K   P+ VTYN  +     +   +
Sbjct: 261 AEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 320

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++  +K  P+ ++Y T+ +  +K    E     L  ME+R  + N   YSSL+
Sbjct: 321 KALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 380

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---- 342
           S     G  +  +R+WK+M     K N   Y   I  L +  + ++AE+I  E  S    
Sbjct: 381 SGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFL 440

Query: 343 ------------ISGTGDPR-------------------VPNILLAAYINRNQLEMAESF 371
                           GD +                     ++LL       +L  A + 
Sbjct: 441 PNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTV 500

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  ++ +G+KP    +  +  G    G ++K L+ F +      K  PD       +N L
Sbjct: 501 WTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNAL 560

Query: 432 EEQGDIDGAEHLLVTLRNAG 451
             Q ++  A  LL ++ + G
Sbjct: 561 CRQDNLTRAIDLLNSMLDEG 580



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 3/244 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +++  V+ +++ +   ++  M E G       Y+ +++     G+ +   ++ +E+
Sbjct: 340 TYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 399

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +K   P+VV Y  ++         + AE    E+      P+  +YS+L   + K    
Sbjct: 400 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 459

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA    KEM  +  R N V  S LL+     G   E L +W  M+    K +   Y+ +
Sbjct: 460 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 519

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I  L  +G  +K   ++ E +       P V   NIL  A   ++ L  A    N ++ +
Sbjct: 520 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 579

Query: 379 GIKP 382
           G  P
Sbjct: 580 GCDP 583



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 10/313 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
           +N +LN+ I  G      +    +     K   P+++TYNL + A       + A   F 
Sbjct: 163 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 222

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+     +PD  +YSTL +   K    ++A   L EM+   C  N V ++ L+   +  G
Sbjct: 223 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 282

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                 ++   M       N+  Y  +I  L   G+ +KA ++ ++  S     +     
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 342

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            ++   + + + E        +  +G K     +  L  G  K+G+ E  +  +K+   +
Sbjct: 343 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM--A 400

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--- 469
            +   P+  +  A  + L      D AE +L  + + G +     Y+SL++ + K G   
Sbjct: 401 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 460

Query: 470 KMPLIIVERMQKD 482
           K  L+  E M +D
Sbjct: 461 KAILVWKEMMSQD 473



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           CS LL+   ++ +  EA  +   M   G     + Y+ M+      G +DK  ++  E++
Sbjct: 481 CSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 540

Query: 203 ---KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-LTSLYIKME 258
                + PDVVTYN+   A   Q++   A      +     DPD ++ +  L +L  ++ 
Sbjct: 541 CQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERIN 600

Query: 259 LPEKAATTLKEMEKRTCRKNR 279
            P+     L E+  R  ++ R
Sbjct: 601 PPQDGRLFLDELVVRLLKRER 621


>gi|1931651|gb|AAB65486.1| membrane-associated salt-inducible protein isolog; 88078-84012
           [Arabidopsis thaliana]
          Length = 652

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 9/342 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +LN I+R+     R++  +++ EWM  Q   K+    Y+  +  +   + +S A   +++
Sbjct: 100 DLNVILRDFGISGRWQDLIQLFEWM--QQHGKISVSTYSSCIKFVGA-KNVSKALEIYQS 156

Query: 133 LPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN--LYISN 188
           +PD+    +   C+++L   V+N K      L ++M   G     + YN +L   + + N
Sbjct: 157 IPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKN 216

Query: 189 GQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G   K  +++ EL  N    D V Y   LA CAS    E AE    ++K     P+   Y
Sbjct: 217 G-YPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHY 275

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S+L + Y      +KA   + EM+      N+V  ++LL +Y   G  D    +  ++ S
Sbjct: 276 SSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELES 335

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N+  Y  ++  L K G+ E+A +I+D+ +      D    +I+++A     + + 
Sbjct: 336 AGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKE 395

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           A+       T   K        +   Y + G+ME V+   KK
Sbjct: 396 AKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKK 437



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 12/258 (4%)

Query: 245 ISYSTLTSL--YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           IS ST +S   ++  +   KA    + +   + + N    +S+LS     G  D  ++++
Sbjct: 130 ISVSTYSSCIKFVGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLF 189

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKL-GEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            +M     K +   Y  +++  +K+   + KA  +  E        D  +   +LA   +
Sbjct: 190 DQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICAS 249

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVP 419
             + E AE+F  ++  +G  P    +  L   Y  KG  +K  E     K+IG     VP
Sbjct: 250 NGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIG----LVP 305

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIV 476
           +  ++T       + G  D +  LL  L +AG+   E+ Y  L+   +KAGK+     I 
Sbjct: 306 NKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIF 365

Query: 477 ERMQKDNVQMDAETQKVL 494
           + M+   V+ D     ++
Sbjct: 366 DDMKGKGVRSDGYANSIM 383


>gi|145335386|ref|NP_172560.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242678|sp|Q0WVV0.1|PPR31_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g10910, chloroplastic; Flags: Precursor
 gi|110741600|dbj|BAE98748.1| membrane-associated salt-inducible protein isolog [Arabidopsis
           thaliana]
 gi|332190541|gb|AEE28662.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 664

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 9/342 (2%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +LN I+R+     R++  +++ EWM  Q   K+    Y+  +  +   + +S A   +++
Sbjct: 100 DLNVILRDFGISGRWQDLIQLFEWM--QQHGKISVSTYSSCIKFVGA-KNVSKALEIYQS 156

Query: 133 LPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN--LYISN 188
           +PD+    +   C+++L   V+N K      L ++M   G     + YN +L   + + N
Sbjct: 157 IPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKN 216

Query: 189 GQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G   K  +++ EL  N    D V Y   LA CAS    E AE    ++K     P+   Y
Sbjct: 217 G-YPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHY 275

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S+L + Y      +KA   + EM+      N+V  ++LL +Y   G  D    +  ++ S
Sbjct: 276 SSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELES 335

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N+  Y  ++  L K G+ E+A +I+D+ +      D    +I+++A     + + 
Sbjct: 336 AGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKE 395

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           A+       T   K        +   Y + G+ME V+   KK
Sbjct: 396 AKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKK 437



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 12/258 (4%)

Query: 245 ISYSTLTSL--YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           IS ST +S   ++  +   KA    + +   + + N    +S+LS     G  D  ++++
Sbjct: 130 ISVSTYSSCIKFVGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLF 189

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKL-GEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
            +M     K +   Y  +++  +K+   + KA  +  E        D  +   +LA   +
Sbjct: 190 DQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICAS 249

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVP 419
             + E AE+F  ++  +G  P    +  L   Y  KG  +K  E     K+IG     VP
Sbjct: 250 NGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIG----LVP 305

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIV 476
           +  ++T       + G  D +  LL  L +AG+   E+ Y  L+   +KAGK+     I 
Sbjct: 306 NKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIF 365

Query: 477 ERMQKDNVQMDAETQKVL 494
           + M+   V+ D     ++
Sbjct: 366 DDMKGKGVRSDGYANSIM 383


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 122/281 (43%), Gaps = 3/281 (1%)

Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           +++K  Q+++ L+K+  PDV  YN  ++     +  + A K    +KK   +PD ++Y+ 
Sbjct: 127 KIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNI 186

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L   +      + A   + ++ K  C+   + Y+ L+      G  DE +++  +M+S  
Sbjct: 187 LIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRG 246

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + +   Y  V++ + K G  ++A                   NILL   +N  + E  E
Sbjct: 247 LRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGE 306

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
              + ++ KG +P   T+  L     + G++++     K  +   +   PD        +
Sbjct: 307 KLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLK--VMKEKALAPDGYSYDPLIS 364

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            L  +G +D A   L  + + GH+   + YNS+L +  K G
Sbjct: 365 ALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNG 405



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 150/328 (45%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELK 202
           +A++  + +  +   A  ++++M + GF    + YN ++  +   G+LD   +++ Q LK
Sbjct: 150 NAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLK 209

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N  P V+TY + + A  +Q   + A K   E+    + PD  +Y+ + +   K  + ++
Sbjct: 210 DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDR 269

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L  + K  C      Y+ LL    N G  +   ++   M+    + N   Y+ +I+
Sbjct: 270 AFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLIT 329

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           +L + G+ ++A+N+    +  +   D    + L++A     ++++A  F + +++ G  P
Sbjct: 330 ALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLP 389

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              ++  +     K G  ++ L  F+K +G V    P+       +  L   GD   A  
Sbjct: 390 DILSYNSILASLCKNGNADEALNIFEK-LGEV-GCPPNAGSYNTLFGALWSSGDKIRALG 447

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           +++ + + G    EI YNSL+    + G
Sbjct: 448 MILEMLSNGIDPDEITYNSLISCLCRDG 475



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 1/265 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ + +      EA  L+++M   G       YN ++N     G LD+  + L  +
Sbjct: 218 TYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRI 277

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KN     V TYN+ L    ++   E  EK   ++     +P+ I+YSTL +   +    
Sbjct: 278 SKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKI 337

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   LK M+++    +  +Y  L+S     G  D  +     M+S     +   Y  +
Sbjct: 338 DEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSI 397

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           ++SL K G  ++A NI+++   +    +    N L  A  +      A      +++ GI
Sbjct: 398 LASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGI 457

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P   T+  L     + G +++ +E
Sbjct: 458 DPDEITYNSLISCLCRDGLVDQAIE 482



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/278 (19%), Positives = 114/278 (41%), Gaps = 4/278 (1%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A+  + + K+ G        N ++       R   AL V + + L+ + K     Y + +
Sbjct: 165 ASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL-LKDNCKPTVITYTILI 223

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           +      G+  A    + +  +   PD  T + +++   +      A   + ++S+ G +
Sbjct: 224 EATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCV 283

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
                YN +L   ++ G+ +   +++ + L K   P+ +TY+  + A       + A+  
Sbjct: 284 AGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNV 343

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
              +K+  + PD  SY  L S   +    + A   L +M       + ++Y+S+L+    
Sbjct: 344 LKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCK 403

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
            G  DE L I++K+  +    N   Y  +  +L   G+
Sbjct: 404 NGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGD 441


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 151/329 (45%), Gaps = 13/329 (3%)

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP-DKMRGPDTCSALLHSYVQNKKSAEA 159
           + +K   GD    L ++ K + +  A+ FF+ +  + M    T S L+  +     S+EA
Sbjct: 179 FGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEA 238

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L E+M E G     + YN +L      G +D+  ++ +E+  N  +PD  +Y++++ A
Sbjct: 239 RKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA 298

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
               ND  +A +    +++  + P+  +Y+ +     K E  ++A   L EM +R    +
Sbjct: 299 YCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPD 358

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             +Y+++ + + +    ++ LR+  +M       +   Y  V+  L+++G F++  +++ 
Sbjct: 359 LWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWG 418

Query: 339 EWESISGTGDPRVPNILLAAYI-NRNQLEMAESFYNRLVTKGIKPCYTTWELL-----TW 392
             E            +++  +   + +LE A  ++  ++  GI P   T ELL       
Sbjct: 419 GMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGL 478

Query: 393 GYLKK-----GQMEKVLECFKKAIGSVRK 416
           G+ ++     G+ME+   C  + + SV +
Sbjct: 479 GFSEQIDVLAGKMERSTSCVIQELSSVMR 507



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/348 (16%), Positives = 132/348 (37%), Gaps = 18/348 (5%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            +++ K  G + H++ L       ++L  ++H+ E      +  DI   S  + +  D +
Sbjct: 86  VLKRCKNLGFSAHRFFL-----WAKRLPGFEHSKES---YHILVDILGSSKQFPLIWDFL 137

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           S +R     E            P+    +  +Y +     +A     +M + G       
Sbjct: 138 SDMRETRCCEI----------CPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGD 187

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
            + +L +      + +  +   ++     P+  TY++ +       D   A K F E+++
Sbjct: 188 VDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRE 247

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
                D ++Y++L     K    ++A    +EM       +  +YS  +  Y  +     
Sbjct: 248 RGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHS 307

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
             ++  +M       N   Y C++  L K  + ++A  + DE      + D    N + A
Sbjct: 308 AFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQA 367

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            + +  ++  A    +R+  +   P   T+ ++    L+ G+ ++V +
Sbjct: 368 FHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTD 415


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 151/329 (45%), Gaps = 13/329 (3%)

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP-DKMRGPDTCSALLHSYVQNKKSAEA 159
           + +K   GD    L ++ K + +  A+ FF+ +  + M    T S L+  +     S+EA
Sbjct: 152 FGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEA 211

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
             L E+M E G     + YN +L      G +D+  ++ +E+  N  +PD  +Y++++ A
Sbjct: 212 RKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA 271

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
               ND  +A +    +++  + P+  +Y+ +     K E  ++A   L EM +R    +
Sbjct: 272 YCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPD 331

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             +Y+++ + + +    ++ LR+  +M       +   Y  V+  L+++G F++  +++ 
Sbjct: 332 LWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWG 391

Query: 339 EWESISGTGDPRVPNILLAAYI-NRNQLEMAESFYNRLVTKGIKPCYTTWELL-----TW 392
             E            +++  +   + +LE A  ++  ++  GI P   T ELL       
Sbjct: 392 GMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGL 451

Query: 393 GYLKK-----GQMEKVLECFKKAIGSVRK 416
           G+ ++     G+ME+   C  + + SV +
Sbjct: 452 GFSEQIDVLAGKMERSTSCVIQELSSVMR 480



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/266 (16%), Positives = 102/266 (38%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P+    +  +Y +     +A     +M + G        + +L +      + +  +   
Sbjct: 123 PEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFD 182

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           ++     P+  TY++ +       D   A K F E+++     D ++Y++L     K   
Sbjct: 183 KVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGN 242

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A    +EM       +  +YS  +  Y  +       ++  +M       N   Y C
Sbjct: 243 VDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNC 302

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++  L K  + ++A  + DE      + D    N + A + +  ++  A    +R+  + 
Sbjct: 303 IVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKEN 362

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLE 405
             P   T+ ++    L+ G+ ++V +
Sbjct: 363 CMPDRHTYNMVLKMLLRVGRFDRVTD 388


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 45/356 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+H   +N K  EA  +  ++ E G L     YN +++     G +DK  Q+L+E+
Sbjct: 593 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K  +PD+VTYN+ +       + E A+  F +++   + P+ ++Y+ +   Y K + P
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 261 EKAATTLKEMEKR---------------TCRKNR-------------------VAYSSLL 286
             A   L+EM  R                C++ +                   V++++L+
Sbjct: 713 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 772

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             Y   G   E   + ++M+      N   YT +I    K G   +A+ ++ E +  +  
Sbjct: 773 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 832

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL-- 404
              +    LL  Y N   +    + +  +V KGI+P   T+ ++   Y ++G + +    
Sbjct: 833 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892

Query: 405 --ECFKKAI---GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             E   K +      R  +P   +I   +   +  G++D A  +L ++   G VS 
Sbjct: 893 KDEILVKGMPMKSGFRLGLPTCSVIARGF---QIAGNMDEAAEVLRSMVKFGWVSN 945



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 162/366 (44%), Gaps = 10/366 (2%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           V L++  K R L  A     ++ DK   PD  T   L++ +   K+S EA+ ++ +M + 
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETA 228
           G    P+ YN +++ ++  G +++  ++  E+       +++ +N  L         E A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            +   E+ +  ++PD  +YS L   + + +   +A   L EM+KR      + YS +++ 
Sbjct: 366 LEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 425

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
               G       I ++M+    K N   YT ++++  K G  E++  I +         D
Sbjct: 426 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD 485

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               N L+  +    ++E A ++   ++ + ++P   T+     GY K G+ME     F 
Sbjct: 486 VFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFN 545

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA---EHLLVTLRNAGHVSTEIYNSLLRTY 465
           + +      +P+  + TA      ++G++  A      +++ R    V T  Y+ L+   
Sbjct: 546 EMLSC--GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT--YSVLIHGL 601

Query: 466 AKAGKM 471
           ++ GKM
Sbjct: 602 SRNGKM 607



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 2/232 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K   +  A+N F+++  +   P+  T +A++  Y ++K    A  L+E+M 
Sbjct: 664 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 723

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             G       YN +LN      + +K   + QE+ +      V++N  +         + 
Sbjct: 724 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQE 783

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A     E+ + +  P+ ++Y++L     K  +  +A     EM++R        Y+SLL 
Sbjct: 784 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 843

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
            Y N+G   EV  ++++M++   + +   Y  +I +  + G   +A  + DE
Sbjct: 844 GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE 895



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/331 (19%), Positives = 143/331 (43%), Gaps = 6/331 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + LL+   +  K  +A  +M++M E G       Y+ ++  +     + +  ++L E+KK
Sbjct: 350 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409

Query: 204 NT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              +P V+TY++ +       + +       E+    + P+ + Y+TL + + K    E+
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 469

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           +   L+ M ++    +   Y+SL+  +      +E      +M+    + N   Y   I 
Sbjct: 470 SRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID 529

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K GE E A+  ++E  S     +  +   L+  +     +  A S +  ++++ +  
Sbjct: 530 GYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ 589

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ +L  G  + G+M +    F +     +  +P+     +  +   +QG++D A  
Sbjct: 590 DVQTYSVLIHGLSRNGKMHEAFGIFSEL--QEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           LL  +   G ++ +I  YN L+    KAG++
Sbjct: 648 LLEEMCIKG-INPDIVTYNILIDGLCKAGEI 677



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 161/407 (39%), Gaps = 44/407 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           + L+ ++ +  +  E+  ++E+M E G L     YN ++  +    ++++    L E L+
Sbjct: 455 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 514

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P+  TY  ++   +   + E A++ F E+    + P+   Y+ L   + K     +
Sbjct: 515 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 574

Query: 263 AATTLK-----------------------------------EMEKRTCRKNRVAYSSLLS 287
           A +  +                                   E++++    N   Y+SL+S
Sbjct: 575 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 634

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                G  D+  ++ ++M       +   Y  +I  L K GE E+A+N++D+ E    T 
Sbjct: 635 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +      ++  Y        A      ++ +G+ P    + ++     K+ + EK L+ F
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
           ++ +            +   Y K    G +  A HLL  +     +   + Y SL+    
Sbjct: 755 QEMLEKGFASTVSFNTLIEGYCK---SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 811

Query: 467 KAGKMPLI--IVERMQKDNVQMDAETQKVL--KITSEMPVSEVSSIF 509
           KAG M     +   MQ+ NV   A+T   L     +   +SEVS++F
Sbjct: 812 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 858



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 122/283 (43%), Gaps = 20/283 (7%)

Query: 207 PDVVTY-NLWLAACASQNDK-------ETAEKAFL-----ELKKTKID----PDWISYST 249
           PDV TY N+  A C   N K       E  EKA L     ELK++ +D    PD  +Y  
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + +   +   +A   L EM     +   + Y++L+  +   G  ++  RI  +M++  
Sbjct: 282 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 341

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + N   +  +++ + K G+ EKA  I  E        D +  ++L+  +     +  A 
Sbjct: 342 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAF 401

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
              + +  + + P   T+ ++  G  + G ++      ++ + +  K  P+  + T    
Sbjct: 402 ELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTLMT 459

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
              ++G ++ +  +L  +R  G +     YNSL+  + KA +M
Sbjct: 460 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 502


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 166/390 (42%), Gaps = 14/390 (3%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEK 165
           G+  + L+ I     +  A +   +LP     PD  S  A+L      K+    + LME+
Sbjct: 193 GNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEE 252

Query: 166 MSECGFLKCP---LPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACAS 221
           M     + CP   + +N +++    NG  ++V ++L Q ++   +PD+  Y   +     
Sbjct: 253 MVR---MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICK 309

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           +   E A +    +    + P+ + Y+TL       E  E+    L EM  + C  + V 
Sbjct: 310 EGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           ++ L+  +   G  D V+ + ++M+      +   YT VI+   K G  ++A  +     
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +     +     I+L    +  +   AE   ++++ +G      T+  L     KKG +E
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 460
           + +E  K+ +  V    PD    +   + L + G  D A  LL  + N G   +T IY+S
Sbjct: 490 QAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 547

Query: 461 LLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           +    ++ G++  +I   + +Q   ++ DA
Sbjct: 548 IASALSREGRINKVIQMFDNIQDTTIRSDA 577



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M E G 
Sbjct: 339 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGC 398

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ ++Y + L    S      AE 
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAED 458

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +     + I+++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 459 LMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 518

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE L +   M++     N   Y+ + S+L + G   K   ++D  +  +   D  
Sbjct: 519 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAV 578

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + E A  F   +V+ G  P  +T+ +L  G   +G +++  E   + 
Sbjct: 579 LYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638

Query: 411 I--GSVRKWVPDH 421
              G++RK +  H
Sbjct: 639 CSKGALRKHLMKH 651



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 130/325 (40%), Gaps = 4/325 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           ++ +     + A+A A++++M   G    P  Y+ +L      G      ++L++L  + 
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            + DV   NL L A   Q   + A     +L     +PD +SY+ +       +      
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             ++EM +  C  N V +++L+S     G  + V  +  +M+      +   Y  +I  +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  E A  I +   S     +    N LL    +  + E  E     +  K      
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+ +L   + + G +++V+E  ++ +   R  +PD    T   N   ++G ID A  LL
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLE--RGCMPDVITYTTVINGFCKEGLIDEAVMLL 425

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKA 468
            ++   G     I Y  +L+    A
Sbjct: 426 KSMTACGCKPNTISYTIVLKGLCSA 450


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 149/341 (43%), Gaps = 15/341 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           SA++    ++ + +++  L  +M + G     + YN M+  +  +G+     ++LQE L+
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SP+VVTYN  + A   +     A + + E+    I P+ I+Y+++   + K +  + 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M  + C  +   +++L+  Y      D+ + +  +M       N   Y  +I 
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT----- 377
               +G+   A ++  +  S     D    N LL    +  +L+ A   +  +       
Sbjct: 437 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 496

Query: 378 ------KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
                  G++P   T+ +L  G + +G+  +  E +++     R  VPD    ++  + L
Sbjct: 497 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM--PHRGIVPDTITYSSMIDGL 554

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +Q  +D A  + V++ +       + +N+L+  Y KAG++
Sbjct: 555 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 176/446 (39%), Gaps = 51/446 (11%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A   + +  E G    +      V  + K+     AL +   ME    IK     Y+  +
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + K    S + N F  + DK   P+  T + ++  +  + + + A+ L+++M E    
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + YN ++N ++  G+  +  ++  E L +   P+ +TYN  +     Q+  + AE  
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F  +      PD  +++TL   Y   +  +     L EM +R    N V Y++L+  +  
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 292 MGYKDEVLRIWKKMMS----------------------------LFAKMNDAE------- 316
           +G  +  L + ++M+S                            +F  M  ++       
Sbjct: 441 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASH 500

Query: 317 -----------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                      Y  +I  L+  G+F +AE +Y+E        D    + ++     +++L
Sbjct: 501 PFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           + A   +  + +K   P   T+  L  GY K G+++  LE F +     R  V D  +  
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM--GRRGIVADAIIYI 618

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAG 451
                  + G+I+GA  +   + ++G
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSG 644



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 123/309 (39%), Gaps = 14/309 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L +AE+ F  +  K   PD  T + L+  Y   K+  +   L+ +M 
Sbjct: 361 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN +++ +   G L+    + Q++      PD+VT N  L         +
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480

Query: 227 TAEKAFLELKKTKID-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            A + F  ++K+K+D           PD ++Y+ L    I      +A    +EM  R  
Sbjct: 481 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + + YSS++         DE  +++  M S     N   +  +I+   K G  +    
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLE 600

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++ E        D  +   L+  +     +  A   +  +++ G+ P   T   +  G+ 
Sbjct: 601 LFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFW 660

Query: 396 KKGQMEKVL 404
            K ++E+ +
Sbjct: 661 SKEELERAV 669



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 4/281 (1%)

Query: 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           +V + L    +   PDV+T+   +     +     A      + +  + PD I+Y T   
Sbjct: 166 RVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225

Query: 253 LYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
              KM     A   L++ME+ +  + N V YS+++      G   +   ++ +M      
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y C+I      G +  A+ +  E      + +    N L+ A++   +   A   
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           Y+ ++ +GI P   T+  +  G+ K+ +++   + F   + + +   PD    T   +  
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY--LMATKGCSPDVFTFTTLIDGY 403

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                ID    LL  +   G V+  + YN+L+  +   G +
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 444



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/246 (16%), Positives = 103/246 (41%), Gaps = 6/246 (2%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A   F ++ +++  P  I ++ L    ++ME P+   +  ++ME++  R +  +++ L
Sbjct: 63  EDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 122

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + +       L  + K+  L    +   +T ++  L       +A +++ +      
Sbjct: 123 IKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----C 178

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D      L+       ++  A +  +R+V  G++P   T+     G  K G     L 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +K +  +    P+  + +A  + L + G    + +L + +++ G     + YN ++  
Sbjct: 239 LLRK-MEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 465 YAKAGK 470
           +  +G+
Sbjct: 298 FCISGR 303


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 165/349 (47%), Gaps = 41/349 (11%)

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           L+ A N F  LP K   P  C+A++  Y +N++  EA  L + M      K  + +N ML
Sbjct: 124 LAKARNLFNLLPYKWN-PVCCNAMVAGYAKNRQFDEARRLFDAMPA----KDLVSWNSML 178

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
             Y  NG++    Q  +E+ +    DVV++NL +       D  ++ + F ++     +P
Sbjct: 179 TGYTRNGEMRLGLQFFEEMAER---DVVSWNLMVDGFVEVGDLNSSWEFFEKIP----NP 231

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           + +S+ T+   + +     +A     +M  R    N VA++++++ Y    + DE + ++
Sbjct: 232 NTVSWVTMLCGFARFGKIAEARRLFDQMPIR----NVVAWNAMIAAYVQNCHVDEAISLF 287

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE--WESISGTGDPRVPNILLAAYI 360
            +M     + N   +T VI+  V++G+ ++A  + ++  + +++          +++ Y+
Sbjct: 288 MEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ------TAMISGYV 337

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              +++ A   +N++  + +      W  +  GY + G+M++ L  FK+    V+K +  
Sbjct: 338 QNKRMDDARQIFNQISIRDV----VCWNTMIAGYSQCGRMDEALHLFKQM---VKKDIVS 390

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
              + A+Y ++   G +D A  +   ++    VS   +NSL+    + G
Sbjct: 391 WNTMVASYAQV---GQMDAAIKIFEEMKEKNIVS---WNSLISGLTQNG 433



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 130/351 (37%), Gaps = 56/351 (15%)

Query: 123 LSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
           L  A      +P   R     +A++  YVQNK+  +A  +  ++S    ++  + +N M+
Sbjct: 311 LDEARQLLNQMP--YRNVAAQTAMISGYVQNKRMDDARQIFNQIS----IRDVVCWNTMI 364

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
             Y   G++D+   + +++ K    D+V++N  +A+ A     + A K F E+K+     
Sbjct: 365 AGYSQCGRMDEALHLFKQMVKK---DIVSWNTMVASYAQVGQMDAAIKIFEEMKE----- 416

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
                                             KN V+++SL+S  T  G   + L+ +
Sbjct: 417 ----------------------------------KNIVSWNSLISGLTQNGSYLDALKSF 442

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             M     K + + + C +SS   L   +  + ++          D  V N L+  Y   
Sbjct: 443 MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 502

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
             +  AE  +  +    +     +W  L   Y   G   + L+ F K    V    PD  
Sbjct: 503 GSISSAELLFKDIDHFDV----VSWNSLIAAYALNGNGREALKLFHKM--EVEGVAPDEV 556

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS--TEIYNSLLRTYAKAGKM 471
                 +     G ID    L   +  A ++    E Y  ++    +AG++
Sbjct: 557 TFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRL 607


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 157/324 (48%), Gaps = 11/324 (3%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSY 150
           W++ Q +   VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ +
Sbjct: 164 WLQ-QMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVF 222

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DV 209
            + K   EA+ LM++M E G +   + Y+ +L++Y+ N +  +   +  E+ +   P D+
Sbjct: 223 GKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDL 282

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
            T N+ +      +  + A++ F  ++K  I+P+ +SY+TL  +Y + EL  +A    + 
Sbjct: 283 TTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRL 342

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+K+   +N V Y++++ +Y      ++   + ++M +   + N   Y+ +IS   K G+
Sbjct: 343 MQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGK 402

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++A  ++ +  S     D  +   ++ AY     +  A+   + L      P  T  ++
Sbjct: 403 LDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKI 462

Query: 390 LTWGYLKKGQMEKVLECFKKAIGS 413
           L     + G++E+    F++A  +
Sbjct: 463 LA----RAGRIEEATWVFRQAFDA 482



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 145/358 (40%), Gaps = 37/358 (10%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYA 111
           R A + M++ +E G        + ++    + +++  AL V  E  E +  + L + +  
Sbjct: 229 REAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCN-- 286

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSEC 169
           V +D+  ++     A+  F ++      P+  S   LL  Y + +   EA  L   M + 
Sbjct: 287 VMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKK 346

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
              +  + YN M+ +Y  + + +K   ++QE++ +   P+ +TY+  ++        + A
Sbjct: 347 DIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRA 406

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME-----------KRTCRK 277
              F +L+ + ++ D + Y T+   Y +  L   A   L E++           K   R 
Sbjct: 407 AMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILARA 466

Query: 278 NRV--------------------AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            R+                     +  ++ L++       V+ +++KM       +    
Sbjct: 467 GRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVI 526

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             V+++  KL EFEKA+ +Y E +         V   +L+ Y  R    M E+ + RL
Sbjct: 527 ALVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERL 584



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/321 (19%), Positives = 134/321 (41%), Gaps = 42/321 (13%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SP V  YN+ L         + A   F E++   + PD  +YSTL + + K  + + +  
Sbjct: 104 SPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLF 163

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK---------------MMSLFA 310
            L++ME+     + V YS+L+ L   +    + + I+ +               M+++F 
Sbjct: 164 WLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFG 223

Query: 311 K-------------------MND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           K                   M D   Y+ ++S  V+  +F +A +++ E        D  
Sbjct: 224 KAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLT 283

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-K 409
             N+++  Y   +  + A+  +  +   GI+P   ++  L   Y +     + +  F+  
Sbjct: 284 TCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLM 343

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
               + + V  +  +   Y K  E    + A +L+  ++N G     I Y++++  + KA
Sbjct: 344 QKKDIEQNVVTYNTMIKVYGKSLEH---EKATNLMQEMQNRGIEPNAITYSTIISIWGKA 400

Query: 469 GKM--PLIIVERMQKDNVQMD 487
           GK+    ++ ++++   V++D
Sbjct: 401 GKLDRAAMLFQKLRSSGVEID 421


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 156/359 (43%), Gaps = 14/359 (3%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD CS   ++  +        A  L+E+M   GF      +  ++    + G LD     
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L+ +     P+VVTY   +AA A     E A K   E+++    P+ ++Y+ L     K+
Sbjct: 170 LRSM--GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKL 227

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            +   A   +K+M +     N + ++SL+  +   G  D+  ++   M++   + N   Y
Sbjct: 228 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 287

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           + +I  L K  +F +A+ + +E ++   T D    + L+      +++E AE    R+  
Sbjct: 288 SALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG 347

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYNKLEEQG 435
            G  P    +  +   + K G   K+LE  +K +  +RK    PD        + L + G
Sbjct: 348 SGCTPDVVVYSSIIHAFCKSG---KLLEA-QKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 403

Query: 436 DIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
            I  A+ +L  ++ +G V  ++  Y++++    K+  +     +++RM K     D  T
Sbjct: 404 KIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 462



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 134/309 (43%), Gaps = 17/309 (5%)

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETA 228
           GF      +N +L + +   +  +   + + EL  +  PDV +YN+ ++   +  D   A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
            +   E+K     PD  +++ + +        + A   L+ M    C  N V Y++L++ 
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAA 188

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +      +E +++ ++M       N   Y  ++ +L KL     A+++  +   I G   
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM--IEGGFA 246

Query: 349 PRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKV 403
           P V   N L+  +  R  ++ A      +V KG++P   T+  L  G  K  +    ++V
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 306

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
           LE  K      R   PD    +A  + L +   I+ AE +L  +  +G      +Y+S++
Sbjct: 307 LEEMK-----TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 463 RTYAKAGKM 471
             + K+GK+
Sbjct: 362 HAFCKSGKL 370



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 39/266 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D + K +    A+   E +  +   PD  T SAL+H   +  K  EAE ++ +M+
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK------------------------ 203
             G     + Y+ +++ +  +G+L +  + LQE++K                        
Sbjct: 347 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 204 -------------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
                        +  PDVVTY+  +      +    A+K    + K   +PD ++Y+T+
Sbjct: 407 EAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
                K    E+A   L+ M++  C  N V Y++L+S        DE  R+ ++M +   
Sbjct: 467 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGC 526

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENI 336
             N   Y  +++ L   G  ++A+ +
Sbjct: 527 PPNLVTYNTMVNGLCVSGRIKEAQQL 552



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 134/298 (44%), Gaps = 13/298 (4%)

Query: 58  TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
            + + K  G T   +  + ++  L K  + + A    E M  +      + D  V+  +I
Sbjct: 306 VLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA----EQMLRRMAGSGCTPDVVVYSSII 361

Query: 118 ---SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG-F 171
               K   L  A+   + +  + + PD  T + ++    +  K AEA+ ++E+M E G  
Sbjct: 362 HAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV 421

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
           L   + Y+ ++N    +  L +  ++L  + K   +PDVVTY   +         E AE 
Sbjct: 422 LPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY 481

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +K+    P+ ++Y+TL S   K    ++A   ++EM    C  N V Y+++++   
Sbjct: 482 LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLC 541

Query: 291 NMGYKDEVLRIWKKMMSLFAKM--NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             G   E  ++ ++M    A+   + A Y  ++++L+     ++AE + ++ +S + +
Sbjct: 542 VSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSS 599


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 149/341 (43%), Gaps = 15/341 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           SA++    ++ + +++  L  +M + G     + YN M+  +  +G+     ++LQE L+
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SP+VVTYN  + A   +     A + + E+    I P+ I+Y+++   + K +  + 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A      M  + C  +   +++L+  Y      D+ + +  +M       N   Y  +I 
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT----- 377
               +G+   A ++  +  S     D    N LL    +  +L+ A   +  +       
Sbjct: 437 GFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 496

Query: 378 ------KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
                  G++P   T+ +L  G + +G+  +  E +++     R  VPD    ++  + L
Sbjct: 497 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM--PHRGIVPDTITYSSMIDGL 554

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            +Q  +D A  + V++ +       + +N+L+  Y KAG++
Sbjct: 555 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 176/446 (39%), Gaps = 51/446 (11%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHL 114
           A   + +  E G    +      V  + K+     AL +   ME    IK     Y+  +
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + K    S + N F  + DK   P+  T + ++  +  + + + A+ L+++M E    
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
              + YN ++N ++  G+  +  ++  E L +   P+ +TYN  +     Q+  + AE  
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           F  +      PD  +++TL   Y   +  +     L EM +R    N V Y++L+  +  
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 292 MGYKDEVLRIWKKMMS----------------------------LFAKMNDAE------- 316
           +G  +  L + ++M+S                            +F  M  ++       
Sbjct: 441 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASH 500

Query: 317 -----------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                      Y  +I  L+  G+F +AE +Y+E        D    + ++     +++L
Sbjct: 501 PFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           + A   +  + +K   P   T+  L  GY K G+++  LE F +     R  V D  +  
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM--GRRGIVADAIIYI 618

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAG 451
                  + G+I+GA  +   + ++G
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSG 644



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 17/320 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   L +AE+ F  +  K   PD  T + L+  Y   K+  +   L+ +M 
Sbjct: 361 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN +++ +   G L+    + Q++      PD+VT N  L         +
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480

Query: 227 TAEKAFLELKKTKID-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
            A + F  ++K+K+D           PD ++Y+ L    I      +A    +EM  R  
Sbjct: 481 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + + YSS++         DE  +++  M S     N   +  +I+   K G  +    
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLE 600

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++ E        D  +   L+  +     +  A   +  +++ G+ P   T   +  G+ 
Sbjct: 601 LFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFW 660

Query: 396 KKGQMEK---VLECFKKAIG 412
            K ++E+   +LE  + ++G
Sbjct: 661 SKEELERAVAMLEDLQMSVG 680



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 4/281 (1%)

Query: 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           +V + L    +   PDV+T+   +     +     A      + +  + PD I+Y T   
Sbjct: 166 RVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225

Query: 253 LYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
              KM     A   L++ME+ +  + N V YS+++      G   +   ++ +M      
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   Y C+I      G +  A+ +  E      + +    N L+ A++   +   A   
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           Y+ ++ +GI P   T+  +  G+ K+ +++   + F   + + +   PD    T   +  
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY--LMATKGCSPDVFTFTTLIDGY 403

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                ID    LL  +   G V+  + YN+L+  +   G +
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 444



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 41/246 (16%), Positives = 103/246 (41%), Gaps = 6/246 (2%)

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           E A   F ++ +++  P  I ++ L    ++ME P+   +  ++ME++  R +  +++ L
Sbjct: 63  EDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTIL 122

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +  + +       L  + K+  L    +   +T ++  L       +A +++ +      
Sbjct: 123 IKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----C 178

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D      L+       ++  A +  +R+V  G++P   T+     G  K G     L 
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +K +  +    P+  + +A  + L + G    + +L + +++ G     + YN ++  
Sbjct: 239 LLRK-MEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 465 YAKAGK 470
           +  +G+
Sbjct: 298 FCISGR 303


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 152/345 (44%), Gaps = 18/345 (5%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD +    T + L  +  + + S++A  L+E+M E G     + +N ++     +G+L+
Sbjct: 342 LPDVV----TYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELE 397

Query: 193 KVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                L ++  +  +PDV+TYN  + A     +   A     E+ +  +  D  + +T+ 
Sbjct: 398 GALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVL 457

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K +  E+A   L+   +R    + V+Y ++++ Y      +  LR+W +M+     
Sbjct: 458 YNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLT 517

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            + + Y  +I  L ++G  ++A +  +E        D    NI++ AY     LE A  F
Sbjct: 518 PSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQF 577

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-AYNK 430
           +N++V    KP   T   L  G    G+++K L+ F+        WV   + +    YN 
Sbjct: 578 HNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFE-------SWVEKGKKVDVITYNT 630

Query: 431 LEE----QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
           L +     GD+D A H    +   G       YN +L   ++AG+
Sbjct: 631 LIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGR 675



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/375 (19%), Positives = 155/375 (41%), Gaps = 10/375 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A      + D    PD  T + L+H++ +    A+A  LM++M   G        N 
Sbjct: 396 LEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNT 455

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L       + ++   +LQ   ++   PD V+Y   +AA   + + E A + + E+ + K
Sbjct: 456 VLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKK 515

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + P   +Y+TL     +M   ++A   L E+ ++    +   Y+ ++  Y   G  +   
Sbjct: 516 LTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAF 575

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +   KM+    K +      +++ L   G+ +KA  +++ W       D    N L+   
Sbjct: 576 QFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTM 635

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKW 417
                ++ A  F+  +  +G++P   T+ ++     + G+ E+      K    G++ + 
Sbjct: 636 CKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQS 695

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG--KMPLII 475
                L  ++ ++ E   D    E    T+ N    ++E Y  L+     +G  K    I
Sbjct: 696 FSSPLLKPSSVDEAESGKDAKTEEE---TVENPQDSASEAYTKLVNGLCTSGQFKEAKAI 752

Query: 476 VERMQKDNVQMDAET 490
           ++ M +  + +D+ T
Sbjct: 753 LDEMMQKGMSVDSST 767



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 3/205 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P+  T+NL +    S+     A      ++   + PD ++Y+TL + + +  +  +A   
Sbjct: 202 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 261

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L  M+K      R  Y++L+S Y  +G+  +  ++ + M +   + +   Y  + + L +
Sbjct: 262 LARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQ 321

Query: 327 LGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            G+ ++A  + DE E + GT  P V   N L  A         A      +  KG+K   
Sbjct: 322 AGKVDEAFRLKDEMERL-GTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATL 380

Query: 385 TTWELLTWGYLKKGQMEKVLECFKK 409
            T  ++  G  K G++E  L C  K
Sbjct: 381 VTHNIVIKGLCKDGELEGALGCLNK 405



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 7/294 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H++      A+A + +  M   G     + YN +LN +   G L +   +L  +
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           KK+  +P   TYN  ++A A     + A K    +     +PD  +Y+ L +   +    
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 261 EKAATTLKEMEK-RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
           ++A     EME+  T   + V Y++L           + LR+ ++M     K     +  
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNI 385

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           VI  L K GE E A    ++        D    N L+ A+     +  A +  + +V +G
Sbjct: 386 VIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRG 445

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNK 430
           +K    T   + +   K+ + E+     +      R ++PD   +  + AAY K
Sbjct: 446 LKLDTFTLNTVLYNLCKEKRYEEAQGLLQSP--PQRGFMPDEVSYGTVMAAYFK 497



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 5/293 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +++ + S G L      L  ++    SPD VTYN  L A   +     A      +K
Sbjct: 207 FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK 266

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  + P   +Y+TL S Y ++   ++A   ++ M       +   Y+ L +     G  D
Sbjct: 267 KDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVD 326

Query: 297 EVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           E  R+  +M  L   + D   Y  +  +  K      A  + +E             NI+
Sbjct: 327 EAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIV 386

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       +LE A    N++   G+ P   T+  L   + K G + K      + +    
Sbjct: 387 IKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGL 446

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           K +    L T  YN  +E+   + A+ LL +    G +  E+ Y +++  Y K
Sbjct: 447 K-LDTFTLNTVLYNLCKEK-RYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFK 497



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 10/258 (3%)

Query: 75  NRIVRELRKLKRYKHALE-VCEWMELQYDIKLVSGD--YAVHLDLISKIRGLSSAENFFE 131
           N +++ L ++ R K A++ + E ME      LV  D  Y + +    K   L +A  F  
Sbjct: 524 NTLIKGLSRMGRLKEAIDKLNELME----KGLVPDDTTYNIIIHAYCKEGDLENAFQFHN 579

Query: 132 NLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            + +    PD  TC+ L++    N K  +A  L E   E G     + YN ++     +G
Sbjct: 580 KMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDG 639

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
            +D       +++ +   PD  TYN+ L+A +     E A+    +L ++       S  
Sbjct: 640 DVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSP 699

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L    +      K A T +E  +        AY+ L++     G   E   I  +MM  
Sbjct: 700 LLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQK 759

Query: 309 FAKMNDAEYTCVISSLVK 326
              ++ + Y  ++  LVK
Sbjct: 760 GMSVDSSTYITLMEGLVK 777



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/306 (18%), Positives = 123/306 (40%), Gaps = 16/306 (5%)

Query: 196 QMLQELKKNTS--PDVVTYNLWLAACA--SQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           Q+L  L++     P +   N  L+A A       + +  AF  +   ++ P+  +++ L 
Sbjct: 152 QLLHSLRRRVRVRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLV 211

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +        A +TL  M+      + V Y++LL+ +   G   E   +  +M      
Sbjct: 212 HTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVA 271

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                Y  ++S+  +LG  ++A  + +   +     D    N+L A      +++ A   
Sbjct: 272 PTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRL 331

Query: 372 YNRLVTKG-IKPCYTTWELLTWGYLK---KGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
            + +   G + P   T+  L     K        ++LE  ++    V+  +  H ++   
Sbjct: 332 KDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREK--GVKATLVTHNIVIKG 389

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
             K    G+++GA   L  + + G     I YN+L+  + KAG +     +++ M +  +
Sbjct: 390 LCK---DGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGL 446

Query: 485 QMDAET 490
           ++D  T
Sbjct: 447 KLDTFT 452


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 152/335 (45%), Gaps = 10/335 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L+  + +  K   A    ++M ECG    P+ Y  +++ +  +G++D    +
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 198 LQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           L+ +++   +P+V +YN  +   + +N    AEK   ++ +  + P+ I+Y+TL     +
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               + A     +MEKR C  N   YSSL+      G  DE     ++M  +  +     
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDT 651

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y+ ++S L + G F +AE +  + +      D  +   LL A+    +++ A   ++ + 
Sbjct: 652 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIE 711

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
            KG +   + +  L     K GQ+E+    F   +   ++W  D  + T   + L ++G+
Sbjct: 712 AKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE--KEWNADEIVWTVLVDGLLKEGE 769

Query: 437 IDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK 470
           +D    LL  + +     + + Y  L R  ++ GK
Sbjct: 770 LDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 804



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 164/392 (41%), Gaps = 49/392 (12%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           +C+ LL    + +    A  L ++M   G     L +N ++N+    G++ +   +L ++
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 202 -KKNTSPDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
            + + SPDV TY +L L  C ++N  + A   F  + K   DP+ ++YSTL +       
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRN-LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 283

Query: 260 PEKAATTLKEM-----------------------------------EKRTCRKNRVAYSS 284
            ++A   L+EM                                   +KR CR N   Y++
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L+S  + +G  +  + ++ KM+      N   Y  +I+ L   G F  A  I+   E   
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME--- 401
              + +  N ++        +E A   + +++  G  P   T+  L  GYL KG +    
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNS 460
           ++L+  K+      +W  +   + + ++K    G ++ A      +   G     + Y +
Sbjct: 464 RLLDLMKENGCEPDEWTYNE--LVSGFSK---WGKLESASFYFQEMVECGLNPNPVSYTA 518

Query: 461 LLRTYAKAGK--MPLIIVERMQKDNVQMDAET 490
           L+  ++K GK  + L +++RM++     + E+
Sbjct: 519 LIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 151/367 (41%), Gaps = 20/367 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   +  +S++  L  A   +  +  +   P+T +  AL++      + + A  +   M 
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
             G L     YN ++      G ++K   + ++ LK    P VVTYN  +    ++ +  
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +    +K+   +PD  +Y+ L S + K    E A+   +EM +     N V+Y++L+
Sbjct: 461 NAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI 520

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
             ++  G  D  L + K+M  +    N   Y  VI+ L K   F +AE I D+       
Sbjct: 521 DGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM-----V 575

Query: 347 GDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
               +PN+     L+       + + A   ++ +  +   P   T+  L +G  ++G+ +
Sbjct: 576 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKAD 635

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNS 460
           +        IG      P     +   + L  +G    AE L+  ++  G     EIY S
Sbjct: 636 EAER--MSEIGC----EPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 689

Query: 461 LLRTYAK 467
           LL  + K
Sbjct: 690 LLIAHCK 696


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 50/412 (12%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A +F  +  +K+ GP   S   ++  + +      A +    M + G L     YN 
Sbjct: 253 LEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNI 311

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L+     G +D+      +++K+   PDVVTYN              A K   ++    
Sbjct: 312 LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQG 371

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           ++PD ++Y+TL   + +M   E+A    +E   R  + N + Y+ LLS    +G  +E L
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEAL 431

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVK------------------------------LGE 329
            ++ +M +L  + +   Y+ +I  L K                              LG 
Sbjct: 432 TLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGL 491

Query: 330 FE-----KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           F+     +A N +D W  +    D  + NI++  Y+  + +  A   Y +++ +GI P  
Sbjct: 492 FKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSV 551

Query: 385 TTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
            T+  L  G+ ++G +    K+LE  +     ++  VP     T   N   E G++    
Sbjct: 552 VTFNTLINGFCRRGDLMEARKMLEVIR-----LKGLVPSVVTYTTLMNAYCEVGNMQEMF 606

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           H L  +     V T + Y  L++   +  KM   L ++E M    +  D+ T
Sbjct: 607 HFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVT 658



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 155/369 (42%), Gaps = 44/369 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQ 199
           T S L+H   +  K  +A + +   ++   +  P  +  N +++ +   G +D       
Sbjct: 239 TTSILIHGLCEQSKLEDAISFLHDSNK---VVGPSIVSINTIMSKFCKVGLIDVARSFFC 295

Query: 200 ELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            + KN    D  +YN+ L         + A     +++K  ++PD ++Y+TL   ++ + 
Sbjct: 296 LMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLG 355

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
           L   A   +++M  +    + V Y++L+  +  MG  +E L++ ++ +S   K+N   Y 
Sbjct: 356 LMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYN 415

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA----------AYINRNQLEMA 368
            ++S L K+G  E+A  ++DE E++    D  V +IL+           AY    Q+ + 
Sbjct: 416 MLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLK 475

Query: 369 ESFYNRLVTKGI-------------KPCYTTW------------ELLTWGYLKKGQMEKV 403
             F +    + +             +  + TW             ++  GY++   + + 
Sbjct: 476 RKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEA 535

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
           ++ + K I   R   P         N    +GD+  A  +L  +R  G V + + Y +L+
Sbjct: 536 MQLYYKMIE--RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593

Query: 463 RTYAKAGKM 471
             Y + G M
Sbjct: 594 NAYCEVGNM 602



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 172/408 (42%), Gaps = 23/408 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           N ++  L K+ R + AL + + ME   L+ D  +    Y++ +  + K   +  A   +E
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIV----YSILIHGLCKEGFVQRAYQLYE 470

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +  K + P   +  A+L    +N   +EA    +  +    ++  + YN M++ Y+   
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYV--- 527

Query: 190 QLDKVPQMLQ----ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
           +LD + + +Q     +++  +P VVT+N  +     + D   A K    ++   + P  +
Sbjct: 528 RLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVV 587

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+TL + Y ++   ++    L EME        V Y+ L+          E L++ + M
Sbjct: 588 TYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYM 647

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNILLAAYINRN 363
            +     +   Y  +I    K  E  KA  +Y+    +    DP      +L+ A     
Sbjct: 648 YAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMM--LLHNCDPTQVTYKVLINALCIFG 705

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
            L+  +     +  + I     T+  +   +  KGQ+ K L  F + +   + +V   R 
Sbjct: 706 DLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLA--KGFVISIRD 763

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK 470
            +A  N+L ++G I  A++  V + + G     EI  ++L  + + G 
Sbjct: 764 YSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGN 811


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 183/437 (41%), Gaps = 49/437 (11%)

Query: 45  LLSLVYAKRSAA---ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
           L +L   KR++    I +R+  E G T   +  + +++ L   K+ + A E+   M    
Sbjct: 55  LRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDG 114

Query: 102 D---IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKS 156
           D     +VS  Y+  +    K   +  A   F  + D    P+  TC++++    + +  
Sbjct: 115 DNCPPDVVS--YSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAM 172

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLW 215
            +AEA++++M +   +     YN +++ Y+S+GQ  +  ++L+E+ ++   P+VVTYN+ 
Sbjct: 173 DKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNML 232

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +           A + F  + ++   PD  +Y +L   Y       +       M +   
Sbjct: 233 IDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGM 292

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           R N   +S  +  Y   G  DE    + KM  L    +   YT VI  L K+G       
Sbjct: 293 RSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIG------- 345

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
                                       +L+ A S + +++  G+ P   T+  L  G+ 
Sbjct: 346 ----------------------------RLDDAMSRFCQMIDDGLSPNIITFTTLIHGFS 377

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             G+ EK  E F + +   R   PD  + TA  ++L ++G +  A+ L   +  AG    
Sbjct: 378 MYGKWEKAEELFYEMMD--RGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPN 435

Query: 456 EI-YNSLLRTYAKAGKM 471
            + YN+++  Y  AG++
Sbjct: 436 VVSYNTMIHGYFIAGEV 452



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 140/332 (42%), Gaps = 7/332 (2%)

Query: 144 SALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ---MLQ 199
           + LL +    K++++A   ++ +M E G       Y+ +L    +  + ++  +   M+ 
Sbjct: 52  TPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMA 111

Query: 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           E   N  PDVV+Y+  +     + D   A   F ++    I P+ ++ +++     K++ 
Sbjct: 112 EDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQA 171

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            +KA   L++M       N   Y+SL+  Y + G   E +RI K+M     + N   Y  
Sbjct: 172 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNM 231

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K G   +A  I++         D      LL  Y     L    +  + +V  G
Sbjct: 232 LIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNG 291

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           ++  + T+ +  + Y K G++++    F K       ++PD    T   + L + G +D 
Sbjct: 292 MRSNHHTFSIEIYAYCKCGRLDEASLTFIKM--QQLGFMPDIVTYTTVIDGLCKIGRLDD 349

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           A      + + G     I + +L+  ++  GK
Sbjct: 350 AMSRFCQMIDDGLSPNIITFTTLIHGFSMYGK 381



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK-VPQMLQE 200
           T S  +++Y +  +  EA     KM + GF+   + Y  +++     G+LD  + +  Q 
Sbjct: 298 TFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM 357

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +    SP+++T+   +   +     E AE+ F E+    I PD   ++ +     K    
Sbjct: 358 IDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKV 417

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A      M +   + N V+Y++++  Y   G   EV+++   M+ +  K     +  +
Sbjct: 418 TEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL 477

Query: 321 ISSLVKLG---EFEKAENIYDEWESISGTGDPRVPNIL 355
           +  +V +G   + +  + + D     S   D R+ +IL
Sbjct: 478 LDGMVSMGLKPDVDTCKTLID-----SCCEDGRIEDIL 510



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 119/310 (38%), Gaps = 19/310 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K    + A   F ++      PD  T  +LLH Y       E   + + M 
Sbjct: 229 YNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMV 288

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G       ++  +  Y   G+LD+      ++++    PD+VTY   +         +
Sbjct: 289 QNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLD 348

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F ++    + P+ I+++TL   +      EKA     EM  R    +   +++++
Sbjct: 349 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMI 408

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   E  +++  M    AK N   Y  +I      GE  +   + D+   I   
Sbjct: 409 DRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG-- 466

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                   L    +  N L       + +V+ G+KP   T + L     + G++E +L  
Sbjct: 467 --------LKPTAVTFNTL------LDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTL 512

Query: 407 FKKAIGSVRK 416
           F++ +G   K
Sbjct: 513 FREMLGKADK 522


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 123/274 (44%), Gaps = 3/274 (1%)

Query: 128 NFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           N F  +  +   PD  T + LL +        +A  + + M+E G +   + Y  +++ +
Sbjct: 174 NLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTF 233

Query: 186 ISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
             + QL +V ++L+E++ +   PD+  YN  + A A   +   A   F ++++    PD 
Sbjct: 234 AGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDV 293

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +YSTL  +Y      E+  +   +M+  +       Y+SL+ ++   GY  E + ++  
Sbjct: 294 ETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHD 353

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+    K +DA Y+ ++S   + G   +A  I+    +   T        L+++Y     
Sbjct: 354 MVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAM 413

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            + A   Y R+   G+ P  + ++ L  GY K G
Sbjct: 414 YKDALVSYYRIREAGLDPQVSAYDALIQGYAKGG 447



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 13/277 (4%)

Query: 160 EALMEKMSECGFLKCP--------LPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVV 210
           E L+EK SE  F   P          +  ++N Y  NGQ +    +L  +KK    P+++
Sbjct: 95  EGLLEKCSEI-FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLI 153

Query: 211 TYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           TYN  L AC+    D E     F +++   I PD I+Y+TL S      L E+AA   K 
Sbjct: 154 TYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKT 213

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +     + V Y SL+  +        V  + ++M       + A Y  +I +    G 
Sbjct: 214 MNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGN 273

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
              A  ++ + +      D    + LL  Y N+   E   S ++ +      P   T+  
Sbjct: 274 VHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNS 333

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
           L   + + G  ++ +  F   + S  K  PD    +A
Sbjct: 334 LIQVFGEGGYFQESINLFHDMVDSGVK--PDDATYSA 368


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           L  +M E G     + YN +++ Y   G L++V  +  E+K     PD++TYN  L  C 
Sbjct: 252 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYN-GLINCY 310

Query: 221 SQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
            + +K   A + F E+K   + P+ ++YSTL   + K  + + A   L +M +     N 
Sbjct: 311 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNE 370

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             Y+SL+      G   E  ++   M+    K+N   YT ++  L K G   +AE ++  
Sbjct: 371 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 430

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                 + + +V   L+  YI   ++E A     ++    IKP    +  + WG+  + +
Sbjct: 431 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 490

Query: 400 MEK 402
           +E+
Sbjct: 491 LEE 493



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/419 (19%), Positives = 170/419 (40%), Gaps = 43/419 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K   L ++   F  + +    PD  T ++L+  Y +     E  +L  +M 
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 292

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKE 226
           + G +   + YN ++N Y    ++ +  +   E+K N   P+VVTY+  + A   +   +
Sbjct: 293 DVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQ 352

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K   ++++T + P+  +Y++L     K     +A   L +M +   + N V Y++LL
Sbjct: 353 GAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 412

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN----------- 335
                 G   E   +++ M+      N   YT ++   +K    E A             
Sbjct: 413 DGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIK 472

Query: 336 ------------------------IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                                   I +E +S   + +P +   ++ AY    +   A +F
Sbjct: 473 PDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNF 532

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  +   G++    T+ +L  G  + G +E  ++ F + +    +  P+  + T+  + L
Sbjct: 533 FQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQ--PNVAVYTSLIDGL 590

Query: 432 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
                I+ A+ L   ++  G       + +L+    K G +   L+++ RM +  ++ D
Sbjct: 591 CXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFD 649



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 132/310 (42%), Gaps = 3/310 (0%)

Query: 99  LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKS 156
           LQ  +KL    Y   LD + K   +  AE  F ++      P+    +AL+H Y++ ++ 
Sbjct: 397 LQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERM 456

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
            +A  ++++M+EC      + Y  ++  + S  +L++   +L+E+K +  S + V     
Sbjct: 457 EDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTI 516

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           + A         A   F E++   ++   ++Y  L     +  + E A      M     
Sbjct: 517 IDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGL 576

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           + N   Y+SL+         +   +++ +M       +   +T +I   +K G  ++A  
Sbjct: 577 QPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 636

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +      ++   D  V   L++ +    +L  A  F+N ++ KGI P       L   Y 
Sbjct: 637 LISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYY 696

Query: 396 KKGQMEKVLE 405
           K+GQ+++ +E
Sbjct: 697 KRGQLDEAIE 706



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 136/332 (40%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L+ +  +     EA  L+  M + G     + Y  +L+     G++ +  ++ +  
Sbjct: 372 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 431

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           LK   SP+   Y   +         E A K   ++ +  I PD I Y ++   +      
Sbjct: 432 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 491

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+    L+EM+ R    N V  ++++  Y   G   + L  +++M  +  +     Y  +
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L + G  E A + +    S+    +  V   L+      N +E A+  ++ +  +G+
Sbjct: 552 IDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P  T +  L  G LK G +++ L    +      ++  D  + T+  +   + G++  A
Sbjct: 612 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF--DLHVYTSLVSGFSQCGELHQA 669

Query: 441 EHLLVTLRNAGHVSTEIYN-SLLRTYAKAGKM 471
                 +   G +  E+    LLR Y K G++
Sbjct: 670 RKFFNEMIEKGILPEEVLCICLLREYYKRGQL 701



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 8/254 (3%)

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            NGQL  V +   ++     +P V TYN+ +     + D E + + F+++++  + PD +
Sbjct: 209 GNGQL--VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVV 266

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y++L   Y K+   E+ A+   EM+   C  + + Y+ L++ Y            + +M
Sbjct: 267 TYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM 326

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
            +   K N   Y+ +I +  K G  + A  +  +        +      L+ A      L
Sbjct: 327 KNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNL 386

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             A    N ++  G+K    T+  L  G  K G+M +  E F+  +       P+ ++ T
Sbjct: 387 TEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD--GISPNQQVYT 444

Query: 426 A---AYNKLEEQGD 436
           A    Y K E   D
Sbjct: 445 ALVHGYIKAERMED 458



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/206 (18%), Positives = 90/206 (43%), Gaps = 1/206 (0%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQML 198
           P   + ++ +Y +  KS++A    ++M + G     + Y  +++     G ++  V    
Sbjct: 510 PVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFC 569

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           + L     P+V  Y   +      N  E+A+K F E++   + PD  +++ L    +K  
Sbjct: 570 RMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 629

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             ++A   +  M +     +   Y+SL+S ++  G   +  + + +M+       +    
Sbjct: 630 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 689

Query: 319 CVISSLVKLGEFEKAENIYDEWESIS 344
           C++    K G+ ++A  + +E E ++
Sbjct: 690 CLLREYYKRGQLDEAIELKNEMERMA 715


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 165/395 (41%), Gaps = 13/395 (3%)

Query: 19  KAAKITTLGL-ATEKKGAGGRDTLGRRLLSLVYA-KRSAAITMRKWKEEGHTVHK-YELN 75
           K   +T L L     +   GR     RL S +++ K + A+T+     E H +    + +
Sbjct: 24  KGNLVTALSLRICNSRAFSGRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFS 83

Query: 76  RIVRELRKLKRYKHALEV---CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           R++  + KL +Y+  + +    E + + +D+      +   +D   +   LS A +    
Sbjct: 84  RLLIAIAKLNKYEAVISLFRHLEMLGISHDLY----SFTTLIDCFCRCARLSLALSCLGK 139

Query: 133 LPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190
           +      P   T  +L++ +    +  EA +L++++   G+    + YN +++     GQ
Sbjct: 140 MMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQ 199

Query: 191 LDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
           ++    +L+ +KK    PDVVTYN  +           + +   ++ +  I PD I++S 
Sbjct: 200 VNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L  +Y K     +A     EM +R+   N V Y+SL++     G  DE  ++   ++S  
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   Y  +I+   K    +    I          GD    N L   Y    +   AE
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
               R+V+ G+ P   T+ +L  G    G++ K L
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKAL 414



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 124/291 (42%), Gaps = 5/291 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P +V ++  L A A  N  E     F  L+   I  D  S++TL   + +      A + 
Sbjct: 77  PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L +M K     + V + SL++ + ++    E + +  +++ L  + N   Y  +I SL +
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G+   A ++    + +    D    N L+    +     ++    + ++  GI P   T
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVIT 256

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L   Y K+GQ+ +  + + + I   R   P+     +  N L   G +D A+ +L  
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQ--RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNV 314

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAGKMP--LIIVERMQKDNVQMDAETQKVL 494
           L + G     + YN+L+  Y KA ++   + I+  M +D V  D  T   L
Sbjct: 315 LVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/249 (18%), Positives = 103/249 (41%), Gaps = 1/249 (0%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           ++  M   G     + ++ ++++Y   GQL +  +   E+ +++ +P++VTYN  +    
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC 300

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A+K    L      P+ ++Y+TL + Y K +  +     L  M +     +  
Sbjct: 301 IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTF 360

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++L   Y   G      ++  +M+S     +   +  ++  L   G+  KA    ++ 
Sbjct: 361 TYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDL 420

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +           NI++      +++E A   +  L  KG+ P   T+  +  G  +K   
Sbjct: 421 QKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLW 480

Query: 401 EKVLECFKK 409
            +  E ++K
Sbjct: 481 REAHELYRK 489



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L   Y Q  K + AE ++ +M  CG       +N +L+    +G++ K    L++L
Sbjct: 361 TYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDL 420

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K+ T   ++TYN+ +      +  E A   F  L    + PD I+Y T+     +  L 
Sbjct: 421 QKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLW 480

Query: 261 EKAATTLKEMEK 272
            +A    ++M+K
Sbjct: 481 REAHELYRKMQK 492


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 164/386 (42%), Gaps = 17/386 (4%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K  G+  + + ++ +      PD  TCS++L+ + ++ K  EA  L  +M E G     +
Sbjct: 333 KFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHV 392

Query: 177 PYNHMLN-LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  ++N L+ S   ++      Q + +  S D+VT    +         + AE+ F  +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K  + P+ ++YS L   Y K+   E A   L++MEK     N + +SS+++ Y   G  
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 512

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            + + + ++M+      N   Y  +I    K GE + A++   E +S        + +IL
Sbjct: 513 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDIL 572

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L       +++ A S    + +KGI P    +  L  GY K+G     L   ++      
Sbjct: 573 LNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEK-- 630

Query: 416 KWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
               + R    AYN L +     G  D   ++   +   G     I YN+++ TY   GK
Sbjct: 631 ----NIRFDVVAYNALIKGLLRLGKYD-PRYVCSRMIELGLAPDCITYNTIINTYCIKGK 685

Query: 471 M--PLIIVERMQKDNVQMDAETQKVL 494
               L I+  M+   +  +A T  +L
Sbjct: 686 TEDALDILNEMKSYGIMPNAVTYNIL 711



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 115/534 (21%), Positives = 202/534 (37%), Gaps = 124/534 (23%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH- 113
           AA+  R+  E G   +      I+  L K  R   A      ++ Q  ++ +S D     
Sbjct: 375 AAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFN----LQSQMVVRGISFDIVTCT 430

Query: 114 --LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
             +D + K+     AE  FE +      P+  T SALL  Y +  K   AE +++KM + 
Sbjct: 431 TVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKE 490

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
                 + ++ ++N Y   G L K   +L+E+ ++N  P+ + Y + +       +++ A
Sbjct: 491 HVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVA 550

Query: 229 EKAFLELKKTK-----------------------------------IDPDWISYSTLTSL 253
           +    E+K  +                                   IDPD ++Y++L   
Sbjct: 551 DDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDG 610

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL--------------------------- 286
           Y K      A + ++EM+++  R + VAY++L+                           
Sbjct: 611 YFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDC 670

Query: 287 -------SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG----------- 328
                  + Y   G  ++ L I  +M S     N   Y  +I  L K G           
Sbjct: 671 ITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFL 730

Query: 329 -----EFEKAENIYDEWESISGTG--------------------DPRVPNILLAAYINRN 363
                  EKA+ I    E +  +G                    D    N L+  Y   +
Sbjct: 731 VKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGS 790

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--RKWVPD- 420
            +E A   Y+++   GI P  TT+  L  G    G ME+++E  +K +  +  R  VP+ 
Sbjct: 791 HVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNA 850

Query: 421 --HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKM 471
             + ++ + Y ++   G+      L + +   G V T + YN L+  YAK+GKM
Sbjct: 851 ATYDILVSGYGRV---GNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKM 901



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 147/350 (42%), Gaps = 42/350 (12%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           +N +L  +    +L     + Q   KN  P +VTY   +AA       E +   + ++  
Sbjct: 290 FNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIM 349

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             I PD ++ S++   + +     +AA   +EM +     N V+Y+++++     G   E
Sbjct: 350 NGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVME 409

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              +  +M+      +    T V+  L K+G+ ++AE +++    ++   +    + LL 
Sbjct: 410 AFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLD 469

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            Y    ++E+AE    ++  + + P   T+  +  GY KKG + K ++  ++ +   R  
Sbjct: 470 GYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNV 527

Query: 418 VPD---HRLITAAYNKLEEQ--------------------------------GDIDGAEH 442
           +P+   + ++   Y K  EQ                                G +D A  
Sbjct: 528 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARS 587

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDA 488
           L++ + + G +  +I  Y SL+  Y K G     L IV+ M++ N++ D 
Sbjct: 588 LIIDMYSKG-IDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDV 636



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA--- 220
           +M E G     + YN ++N Y   G+ +    +L E+K     P+ VTYN+ +       
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 221 -------------SQNDKETAEKAF----------LELKKTK----------IDPDWISY 247
                        + +  E A+K            LELK+ K          I  D ++Y
Sbjct: 720 FVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTY 779

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L   Y      EKA  T  +M       N   Y++LL   +N G  +E++   +K++S
Sbjct: 780 NALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVS 839

Query: 308 LFAKM----NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
              +     N A Y  ++S   ++G  +K   ++ E  +       +  N+L++ Y    
Sbjct: 840 EMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSG 899

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++  A    N L+TKG  P   T+++LT G+L
Sbjct: 900 KMIEARELLNDLLTKGRIPNSFTYDILTCGWL 931


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/318 (19%), Positives = 155/318 (48%), Gaps = 12/318 (3%)

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQ 152
           E ++ + ++ ++S  + + ++ + K+  L+ A +  E++      P+  T + L+  Y +
Sbjct: 145 EMIKRKIELNVIS--FNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCK 202

Query: 153 NKKSAE---AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPD 208
             +  +   A+A++++M   G     + YN +++ +  +  +    ++  E+++    P+
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
           VVTYN+ +    S    + A     ++  + ++P+ ++++ L + + K +   +A     
Sbjct: 263 VVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFN 322

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--SLFAKMNDAEYTCVISSLVK 326
           +MEK+    N + Y++L+  Y   G  ++   ++  M+   +F ++  + Y C+I+ L +
Sbjct: 323 DMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEV--STYNCLIAGLCR 380

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G+ + A ++ +E  S   + D    NIL+ +   + +   A    + +  KG+ P + T
Sbjct: 381 KGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVT 440

Query: 387 WELLTWGYLKKGQMEKVL 404
           +  L  GY ++G +   L
Sbjct: 441 YNTLMDGYCREGNLRAAL 458



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 147/340 (43%), Gaps = 27/340 (7%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI---SNGQLDKVPQMLQELK 202
           L+ ++V+N K        ++  + GF    +  N +L+  +    NG ++ V +  + +K
Sbjct: 91  LVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYR--EMIK 148

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +    +V+++N+ +           A     ++K   + P+ I+Y+TL   Y KM    K
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGK 208

Query: 263 ---AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE----VLRIWKKMMSLFAKMNDA 315
              A   LKEM  +    N V Y+ L+  +     KDE     +R++ +M     + N  
Sbjct: 209 MYKADAILKEMVAKGICPNEVTYNILIDGFC----KDENVSGAMRVFGEMQRQGLRPNVV 264

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 373
            Y  +I+ L   G+ ++A  + D+   +S   +P V   N+L+  +     +  A + +N
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQM--VSSDLEPNVVTHNVLINGFCKNKTVNEAINLFN 322

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            +  +G+ P   T+  L   Y K G+ME     +   I   R   P+          L  
Sbjct: 323 DMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMID--RGIFPEVSTYNCLIAGLCR 380

Query: 434 QGDIDGAEHL---LVTLRNAGHVSTEIYNSLLRTYAKAGK 470
           +GD+  A  L   +V+ + +  V T  YN L+ +  K G+
Sbjct: 381 KGDVKAARSLMNEMVSKKLSADVVT--YNILIDSLCKKGE 418



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/292 (18%), Positives = 120/292 (41%), Gaps = 3/292 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +S A   F  +  +   P+  T + L++    + K  EA AL ++M 
Sbjct: 231 YNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMV 290

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
                   + +N ++N +  N  +++   +  ++ K+   P+ +TY   + A       E
Sbjct: 291 SSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRME 350

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   +  +    I P+  +Y+ L +   +    + A + + EM  +    + V Y+ L+
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILI 410

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G   + +++  +M       +   Y  ++    + G    A  +    E     
Sbjct: 411 DSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQ 470

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
            +    N+L+  +  + +LE A    N ++ +G+ P  TT+E++    ++KG
Sbjct: 471 ANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 166/391 (42%), Gaps = 54/391 (13%)

Query: 126 AENFFENLP-DKMRGPDTC------SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
           AE FF+N   +    P  C      + L+ +Y +  +  EA      M   G +   + +
Sbjct: 285 AEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTF 344

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N M+++  ++GQL++   ++Q++++    PD  TYN+ ++  A  N+ + A   F ++K+
Sbjct: 345 NTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKE 404

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            +++PD +SY TL   +    L  +A   + EM++R    +    S+L  +Y   G   +
Sbjct: 405 ARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKK 464

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY---DEWESISGTGDPRVPNI 354
              +W +   L   M+   Y+  I +  + G   +AE  +    E   +S        N+
Sbjct: 465 SW-LWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKLSVLE----FNV 519

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW---------------------- 392
           ++ AY   N+ E A    + +   G+ P   ++  L                        
Sbjct: 520 MIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQ 579

Query: 393 -------------GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
                         ++K GQ+E     FK+ IG   +  PD  +     N   + G++  
Sbjct: 580 LVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQ--PDVVVYGILINAFADVGNVRE 637

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
           A + +  LRNAG  ++  IYNSL++ Y K G
Sbjct: 638 AVNYVNALRNAGLPMNAVIYNSLIKLYTKVG 668



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 9/251 (3%)

Query: 167 SECGFLKCP-------LPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAA 218
           +E  FL C        L +N M+  Y  + + +K  Q++  ++ +   PD  +YN  +  
Sbjct: 499 AEKAFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQI 558

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
            AS +    A+   +++++T++  D I Y  + S +IK+   E A    KEM     + +
Sbjct: 559 LASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPD 618

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
            V Y  L++ + ++G   E +     + +    MN   Y  +I    K+G  E+A+  Y 
Sbjct: 619 VVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYK 678

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
             ++     D    N ++  Y  R+ ++ AE  +  L  KG    + ++ ++   Y + G
Sbjct: 679 MLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEF-SFAMMLCMYKRIG 737

Query: 399 QMEKVLECFKK 409
           ++++  +  +K
Sbjct: 738 KLKEAFQIVQK 748



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 158/412 (38%), Gaps = 79/412 (19%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L +K   +  A ++F+ + +    PD  S   LL+++       EAE L+ +M 
Sbjct: 379 YNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMD 438

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ--ELKKNTSPDVVTYNLWLAACASQNDK 225
           E G        + +  +YI  G L K     +   L+ N S +  + N+   A   +   
Sbjct: 439 ERGLEIDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSANI--DAYGERGHI 496

Query: 226 ETAEKAFLELKKTK--------------------------ID--------PDWISYSTLT 251
             AEKAFL  K+++                          ID        PD  SY++L 
Sbjct: 497 LEAEKAFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLI 556

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            +    +LP KA   L +M++     + + Y ++                          
Sbjct: 557 QILASADLPHKAKFYLMKMQETQLVSDCIPYCAV-------------------------- 590

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                    ISS +KLG+ E AE ++ E    +   D  V  IL+ A+ +   +  A ++
Sbjct: 591 ---------ISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNY 641

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            N L   G+      +  L   Y K G +E+  E +K    S  +  PD        +  
Sbjct: 642 VNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQAS--EVGPDVYSSNCMIDLY 699

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 481
            E+  +  AE +  +L+  G  +   +  +L  Y + GK+     IV++M++
Sbjct: 700 SERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRE 751



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 171/405 (42%), Gaps = 29/405 (7%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
           L++   ++ ALE+ EW++ +   +L    Y + L ++ K R     E+ ++ +  +   P
Sbjct: 170 LKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITP 229

Query: 141 --DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
              T   L+  Y +   + EA   +++M++ G     +    ++  Y   G+  K  Q  
Sbjct: 230 VNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFF 289

Query: 199 Q--ELKKNTSPDVV----TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           +   L+  + P V     TYN  +           A   F  + +  I P+ ++++T+  
Sbjct: 290 KNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIH 349

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           +       E+AA+ +++ME+  C  +   Y+ L+SL+      D     +KKM     + 
Sbjct: 350 ICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEP 409

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  ++ +        +AE +  E +      D    + L   YI    L+ +  ++
Sbjct: 410 DLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWF 469

Query: 373 NRLVTKG--IKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAA 427
            R   +G     CY+   +  +G  ++G +   EK   C K+   S +  V +  ++  A
Sbjct: 470 RRFHLEGNMSSECYSA-NIDAYG--ERGHILEAEKAFLCCKE---SRKLSVLEFNVMIKA 523

Query: 428 Y---NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
           Y   N+ E+      A  L+ ++ N G +  +  YNSL++  A A
Sbjct: 524 YGISNRYEK------ACQLIDSMENHGVLPDKFSYNSLIQILASA 562



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 41/243 (16%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPDK     + ++L+          +A+  + KM E   +   +PY  +++ +I  GQL+
Sbjct: 546 LPDKF----SYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLE 601

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDK-------------------------- 225
               + +E+   N  PDVV Y + + A A   +                           
Sbjct: 602 MAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLI 661

Query: 226 ---------ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                    E A++A+  L+ +++ PD  S + +  LY +  + ++A    + + KR   
Sbjct: 662 KLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESL-KRKGD 720

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N  +++ +L +Y  +G   E  +I +KM  L    +   Y  V+      G F+ A   
Sbjct: 721 ANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGT 780

Query: 337 YDE 339
           + E
Sbjct: 781 FKE 783



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 4/180 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMS 167
           Y   + L +K+  L  A+  ++ L     GPD  S+  ++  Y +     +AE + E + 
Sbjct: 657 YNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLK 716

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G       +  ML +Y   G+L +  Q++Q++++     D+++YN  L   A     +
Sbjct: 717 RKGDAN-EFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFK 775

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+ +  I PD  ++ +L  + +K  +P++A   L+   K+  +    A++S+L
Sbjct: 776 DAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRKKDPQSGLQAWASIL 835



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +    K+  L  AE  F+ +      PD      L++++       EA   +  + 
Sbjct: 587 YCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALR 646

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             G     + YN ++ LY   G L++  +  + L+ +   PDV + N  +   + ++  +
Sbjct: 647 NAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVK 706

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE+ F  LK+ K D +  S++ +  +Y ++   ++A   +++M +     + ++Y+++L
Sbjct: 707 QAEEIFESLKR-KGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVL 765

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
             Y   G   + +  +K+M+    + +D  +  +   LVK G
Sbjct: 766 GFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCG 807



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 16/237 (6%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM  R        Y +L+ +Y+  G  +E L    +M     + ++     V+ +  K G
Sbjct: 221 EMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAG 280

Query: 329 EFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           EF+KAE  +  W S+     P V       N L+  Y    QL  A   +  ++ +GI P
Sbjct: 281 EFKKAEQFFKNW-SLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIP 339

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +       GQ+E+     +K      +  PD R      +   +  +ID A  
Sbjct: 340 NTVTFNTMIHICGNHGQLEEAASLMQKM--EELRCPPDTRTYNILISLHAKHNNIDRAAS 397

Query: 443 LLVTLRNAGHVSTEI--YNSLLRTYAK---AGKMPLIIVERMQKDNVQMDAETQKVL 494
               ++ A  +  ++  Y +LL  ++     G+   I+V  M +  +++D  TQ  L
Sbjct: 398 YFKKMKEA-RLEPDLVSYRTLLYAFSIRHLVGEAE-ILVSEMDERGLEIDEFTQSAL 452


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 119/263 (45%), Gaps = 3/263 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN-LYISNGQLDKVPQ 196
           PD  TCS++L+ + ++ K  EA  L  +M E G     + Y  ++N L+ S   ++    
Sbjct: 8   PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 67

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
             Q + +  S D+VT    +         + AE+ F  + K  + P+ ++YS L   Y K
Sbjct: 68  QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCK 127

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   E A   L++MEK     N + +SS+++ Y   G   + + + ++M+      N   
Sbjct: 128 LGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIV 187

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    K GE + A++   E +S        + +ILL       +++ A S    + 
Sbjct: 188 YAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMY 247

Query: 377 TKGIKPCYTTWELLTWGYLKKGQ 399
           +KGI P    +  L  GY K+G 
Sbjct: 248 SKGIDPDIVNYASLIDGYFKEGN 270



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 30/353 (8%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           LL++  +  +  EA +L+  M   G     + Y  +++ Y   G       ++QE+K KN
Sbjct: 226 LLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKN 285

Query: 205 TSPDVVTYNLWLAA------------C--------ASQNDKETAEKAFLELKKTKIDPDW 244
              DVV YN  +              C        A     E A     E+K   I P+ 
Sbjct: 286 IRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNA 345

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           ++Y+ L     K    EKA + L EM         + +  L+  Y+     D++L+I +K
Sbjct: 346 VTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEK 405

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           +++   +++   Y  +I+   +LG   KA+ + DE      + D    N L+  Y   + 
Sbjct: 406 LVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSH 465

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--RKWVPD-- 420
           +E A   Y+++   GI P  TT+  L  G    G ME+++E  +K +  +  R  VP+  
Sbjct: 466 VEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAA 525

Query: 421 -HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKM 471
            + ++ + Y ++   G+      L + +   G V T + YN L+  YAK+GKM
Sbjct: 526 TYDILVSGYGRV---GNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKM 575



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 17/291 (5%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PDVVT +  L           A   F E+ +  +DP+ +SY+T+ +   K     +A   
Sbjct: 8   PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 67

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             +M  R    + V  ++++     +G   E   +++ ++ L    N   Y+ ++    K
Sbjct: 68  QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCK 127

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIK 381
           LG+ E AE +  + E      +   PN+     ++  Y  +  L  A      +V + + 
Sbjct: 128 LGKMELAELVLQKMEK-----EHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVM 182

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P    + +L  GY K G+ + V + F K + S R+    + +     N L+  G +D A 
Sbjct: 183 PNTIVYAILIDGYFKAGE-QDVADDFCKEMKS-RRLEESNVIFDILLNNLKRVGRMDEAR 240

Query: 442 HLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDA 488
            L++ + + G +  +I  Y SL+  Y K G     L IV+ M++ N++ D 
Sbjct: 241 SLIIDMYSKG-IDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDV 290



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 5/259 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +     +AE+ +++M    F+  P+ +  ++  Y  + + DK+ Q+ ++L
Sbjct: 347 TYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKL 406

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                   +  YN  +           A+    E+ K  I  D ++Y+ L   Y      
Sbjct: 407 VASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHV 466

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAE 316
           EKA  T  +M       N   Y++LL   +N G  +E++   +K++S   +     N A 
Sbjct: 467 EKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAAT 526

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  ++S   ++G  +K   ++ E  +       +  N+L++ Y    ++  A    N L+
Sbjct: 527 YDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLL 586

Query: 377 TKGIKPCYTTWELLTWGYL 395
           TKG  P   T+++LT G+L
Sbjct: 587 TKGRIPNSFTYDILTCGWL 605


>gi|449474117|ref|XP_004154078.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 263

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 4/211 (1%)

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154
           EW+E    ++    DYA  + LI+K++GL  AE++   +P   +G     ALL +YV   
Sbjct: 54  EWLEANGQLEFNERDYASRVHLIAKVQGLHKAESYIAKIPKSFQGEVVHRALLANYVVAN 113

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTY 212
              +AE +  K+ +  F      YN ML LY  I   ++  V  +++  K+N  P   TY
Sbjct: 114 NVEKAEEVFNKIKDLEFPMSIFAYNQMLVLYKKIDRRKIADVLLLME--KENIKPCPFTY 171

Query: 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272
            + +      ND    E+    +K   I+ D  + S L   Y+   L  KA   LKE+E+
Sbjct: 172 KILIDGKGLSNDISGMEQVVDSMKAEGIELDVSTLSLLAKHYVSCGLKVKAKAILKEIEE 231

Query: 273 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
                 +     LL  Y  +  +DEV R+W+
Sbjct: 232 TNSNGPQWLCRILLPFYGKLQMEDEVRRLWE 262


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 119/269 (44%), Gaps = 1/269 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H   +N    +   + EKM E G       YN ++N    +G+     ++  E+
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  S ++VTYN  +     +     A +   ++K   I+P+ I+Y+TL   +  +   
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKL 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA +  ++++ R    + V Y+ L+S +   G      ++ K+M     K +   YT +
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTIL 414

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  +    EKA  +    E +  T D    ++L+  +  + ++  A   +  +V K  
Sbjct: 415 IDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKF 474

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +P    +  +  GY K+G   + L  F++
Sbjct: 475 EPNEVIYNTMVLGYCKEGSSYRALRLFRE 503



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 147/354 (41%), Gaps = 7/354 (1%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            ++++YVQ++    +     +M + GF+     +N++L   + +   ++      E K  
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK 158

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              DV ++ + +  C    + E +    +EL++    P+ + Y+TL     K    EKA 
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM K     N   Y+ L+      G K +   +++KM       N   Y CV++ L
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQL 278

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A  ++DE      + +    N L+       +   A    +++ + GI P  
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNL 338

Query: 385 TTWELLTWGYLKKGQMEKVLE-CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            T+  L  G+    ++ K L  C       +   +  + ++ + + K   +GD  GA  +
Sbjct: 339 ITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK---KGDTSGAGKV 395

Query: 444 LVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVER--MQKDNVQMDAETQKVL 494
           +  +   G   +++ Y  L+ T+A++  M   I  R  M++  +  D  T  VL
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVL 449



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 111/251 (44%), Gaps = 1/251 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +  K+ EA  +M++M   G     + YN +++ +    +L K   + ++L
Sbjct: 305 TYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDL 364

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  SP +VTYN+ ++    + D   A K   E+++  I P  ++Y+ L   + + +  
Sbjct: 365 KSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA      ME+     +   YS L+  +   G  +E  R++K M+    + N+  Y  +
Sbjct: 425 EKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTM 484

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    K G   +A  ++ E E      +      ++       + + AE    +++  GI
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGI 544

Query: 381 KPCYTTWELLT 391
            P  +   L++
Sbjct: 545 GPSDSILNLIS 555


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 7/333 (2%)

Query: 77  IVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135
           +V    K  + + A+E    ME L +++  VS  Y   +D    +  +  A+   + + +
Sbjct: 72  MVNAYCKAGKVERAVEFVREMEKLGFELNAVS--YNSLVDGYVSLGDIEGAKGVLKFMSE 129

Query: 136 K--MRGPDTCSALLHSYVQNKKSAEAEALMEKMS-ECGFLKCPLPYNHMLNLYISNGQLD 192
           K  MR   T + L+  Y +  K  EAE ++ +M  E G +     Y  +++ Y   G++ 
Sbjct: 130 KGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMG 189

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++  E LK     ++   N  +            E+  + ++K  + PD  SY TL 
Sbjct: 190 DAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLV 249

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y +  L  KA     +M ++      V Y++LL      G   + LR+W  M+     
Sbjct: 250 DGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVT 309

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N+  Y  ++  L K+G+F +A  ++D+  +          N ++       +++ A+  
Sbjct: 310 PNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKET 369

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
           + R+   G KP   T+  L+ GY K G +E+  
Sbjct: 370 FKRMEELGCKPDGITYRTLSDGYCKVGNVEEAF 402



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 3/304 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QE 200
            C++L++ Y +N +  E E L+  M +         Y  +++ Y  +G   K   +  Q 
Sbjct: 209 VCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQM 268

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L+K   P VVTYN  L       D + A + +  + +  + P+ + Y TL     KM   
Sbjct: 269 LRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDF 328

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A T   ++  R   K+  A++++++    MG  D     +K+M  L  K +   Y  +
Sbjct: 329 SRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTL 388

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
                K+G  E+A  I ++ E         + N L+       ++         + T+G+
Sbjct: 389 SDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGL 448

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+  +G+++K    + + IG  + + P+  + +   + L   G ID A
Sbjct: 449 SPNVVTYGALIAGWCDQGRLDKAFSAYFEMIG--KGFAPNVIICSKIVSSLYRLGRIDEA 506

Query: 441 EHLL 444
             LL
Sbjct: 507 NMLL 510



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 15/348 (4%)

Query: 135 DKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           D+MR     PD  TC+ ++++Y +  K   A   + +M + GF    + YN +++ Y+S 
Sbjct: 55  DQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSL 114

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWIS 246
           G ++    +L+ + +K    + VT  L +     Q   E AEK   E+ K+  +  D  +
Sbjct: 115 GDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYA 174

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y  L   Y K+     A     EM K   + N    +SL++ Y   G   E  R+   M 
Sbjct: 175 YGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMR 234

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQ 364
            L  K +   Y  ++    + G   KA N+ D+   +    +P V   N LL        
Sbjct: 235 KLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQM--LRKGIEPTVVTYNTLLKGLCRFGD 292

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
            + A   ++ ++ +G+ P    +  L  G  K G   + L  +   +   R         
Sbjct: 293 YKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDIL--ARGINKSIYAF 350

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
               N L + G++DGA+     +   G     I Y +L   Y K G +
Sbjct: 351 NTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNV 398



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 5/234 (2%)

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L +Y   G +     +   + K    P + + N  L+    + +  +A   + ++++  
Sbjct: 2   ILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLD 61

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I PD  + + + + Y K    E+A   ++EMEK     N V+Y+SL+  Y ++G  +   
Sbjct: 62  IVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAK 121

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAA 358
            + K M       N    T +I    K  + E+AE +  E E   G   D      L+  
Sbjct: 122 GVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDG 181

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKK 409
           Y    ++  A    + ++  G+K        L  GY K GQ+   E++L C +K
Sbjct: 182 YCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRK 235



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 132/338 (39%), Gaps = 39/338 (11%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++    ++ ++ K+  +L E+  +  SP+VVTY   +A    Q   + A  A+ E+ 
Sbjct: 420 YNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMI 479

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                P+ I  S + S   ++   ++A   L++M         V +  +L       +++
Sbjct: 480 GKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKM---------VDFDLVLDHRCLEDFQN 530

Query: 297 EVLR---IWKKMMSL------FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
             +R    WK   +L      F+  N+  Y   ++ L K G+   A   +      S T 
Sbjct: 531 ADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTP 590

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D      L+  +     +  A +  + +V KG+ P  TT+  L  G  K G +++    F
Sbjct: 591 DNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLF 650

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467
            K    ++  +P+       YN L +     G+    + LR                  K
Sbjct: 651 DKL--HLKGLIPN----VVTYNILIDGYCKSGSPREALDLRG--------------KMLK 690

Query: 468 AGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEV 505
            G  P II      +     ++ ++ +K+ +EM  S V
Sbjct: 691 EGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNV 728



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 15/269 (5%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           CS ++ S  +  +  EA  L++KM +   +          N  I      K+   L E  
Sbjct: 490 CSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESA 549

Query: 203 -KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            K + P+ V YN+ +A          A + FL L      PD  +Y TL   +       
Sbjct: 550 IKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVN 609

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A     EM  +    N   Y++LL+     GY D   R++ K+       N   Y  +I
Sbjct: 610 EAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILI 669

Query: 322 SSLVKLGEFEKAENIYDEW--ESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNR 374
               K G   +A ++  +   E IS       P+I     L+  +  ++ +E A    N 
Sbjct: 670 DGYCKSGSPREALDLRGKMLKEGIS-------PSIITYSSLINGFCKQSDVEEAMKLLNE 722

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           +    +     T+  L  G ++ G ++K+
Sbjct: 723 MKASNVDQTIATFSKLVEGCIQHGDVKKM 751



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 82/188 (43%), Gaps = 1/188 (0%)

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVV 210
           ++ K  +A      +S   F      Y  +++ + + G +++   +  E+  K   P++ 
Sbjct: 569 KSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNIT 628

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TYN  L         + A + F +L    + P+ ++Y+ L   Y K   P +A     +M
Sbjct: 629 TYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKM 688

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     + + YSSL++ +      +E +++  +M +       A ++ ++   ++ G+ 
Sbjct: 689 LKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDV 748

Query: 331 EKAENIYD 338
           +K   +++
Sbjct: 749 KKMSKLHN 756


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 187/443 (42%), Gaps = 22/443 (4%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH---LDLISKIRGLSS 125
           V +++ N +   L   K+ +HAL    W+E      L   D   H   ++++ +   L+ 
Sbjct: 116 VPQFDHNLVYNVLHAAKKSEHALNFFRWVE---RAGLFQHDRETHFKIIEILGRASKLNH 172

Query: 126 AENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A     ++P+K      D    L+ SY +     EA  + +KM E G  +    Y+ +  
Sbjct: 173 ARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFK 232

Query: 184 LYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
             +  G+     +     L +   P   TYN+ L         ETA++ + ++K   I P
Sbjct: 233 EIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISP 292

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D ++Y+T+ + Y + ++ E+A     EM+ +      ++Y++++  Y ++   D+ LR++
Sbjct: 293 DVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLF 352

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI---LLAAY 359
           ++M +   K ND  Y+ ++  L    +  +A  I  E   ++    P+  +I   LL+  
Sbjct: 353 EEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEM--VTRHFAPKDNSIFMRLLSCQ 410

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                L+ A      ++   I      + +L     K G  ++ ++  +  +       P
Sbjct: 411 CKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRP 470

Query: 420 DHRL--ITAAYN----KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
              L    +AYN     L   G    A+     L   G      +N+L+R +AK G   L
Sbjct: 471 QSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDL 530

Query: 474 I--IVERMQKDNVQMDAETQKVL 494
              +++ M +  V  DAE+ K+L
Sbjct: 531 AFEMLKIMGRRGVSRDAESYKLL 553



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 52/340 (15%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A+   E M   G     + YN M+N Y     +++  Q   E+K KN +P V++Y   + 
Sbjct: 278 AKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIK 337

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME-LPEKAATTLKEMEKRT-C 275
              S +  + A + F E+K     P+ I+YSTL       E LPE A   L EM  R   
Sbjct: 338 GYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPE-ARKILTEMVTRHFA 396

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA-- 333
            K+   +  LLS     G  D  + + K M+ L        Y  +I +  K G +++A  
Sbjct: 397 PKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVK 456

Query: 334 --ENIYDEWESISGTG----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-- 385
             EN+ ++   +        +    N+++    N  Q   A++F+ +L+ KGI+      
Sbjct: 457 LLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFN 516

Query: 386 --------------------------------TWELLTWGYLKKGQMEKVLECFKKAIGS 413
                                           +++LL   YL KG+        K A+ S
Sbjct: 517 NLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADA----KTALDS 572

Query: 414 V--RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           +      PD  L  +    L   G +  A  ++ ++ + G
Sbjct: 573 MIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKG 612


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 144/326 (44%), Gaps = 9/326 (2%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSAL 146
           AL    W E Q   +  +  +   ++ + KI+      +  E +  + RG    DT   +
Sbjct: 144 ALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAM--RCRGLLSKDTFRLI 201

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLP-YNHMLNLYISNGQLDKVPQMLQELKKNT 205
           +  Y + +K  EA    EKMS  G LK  L  YN ++++   + Q+ K   + +E+K+N 
Sbjct: 202 VRRYARARKVKEAVETFEKMSSFG-LKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNG 260

Query: 206 S--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              PD+ TY + +     + D    +  + E+    I PD ++Y TL S + K    ++A
Sbjct: 261 RFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEA 320

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               +EME   C  +   Y  L++   +    DE L+ ++   +    M       V+ +
Sbjct: 321 IKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGA 380

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
             +  +F+ A  + DE        + R  +I+L   I   ++E A + + R+  +G +P 
Sbjct: 381 YCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQ 440

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKK 409
             T+ ++   +    +++  L+ +K+
Sbjct: 441 LNTYTMMVGMFCSNERVDMALKVWKQ 466



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 40/268 (14%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL--- 133
           IVR   + ++ K A+E  E M   + +K    DY   +D++SK + +  A   F+ +   
Sbjct: 201 IVRRYARARKVKEAVETFEKMS-SFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRN 259

Query: 134 ----PDK------MRG-----------------------PDTCS--ALLHSYVQNKKSAE 158
               PD       M G                       PD  +   L+ S+ ++ K  E
Sbjct: 260 GRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDE 319

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLA 217
           A  +  +M   G +  P  Y  ++N   S  +LD+  +  +  K +  P +V T N  + 
Sbjct: 320 AIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVG 379

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
           A    +  + A K   E++KT I P+  +Y  +    IK +  E+A    + M    C  
Sbjct: 380 AYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEP 439

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
               Y+ ++ ++ +    D  L++WK+M
Sbjct: 440 QLNTYTMMVGMFCSNERVDMALKVWKQM 467


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 172/405 (42%), Gaps = 67/405 (16%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           S LLH Y +  +      + E+MS  G     + Y  +++    +G++ K  +++  + +
Sbjct: 168 SCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTE 227

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDPDWISYSTL-TSLYIKM 257
           +   P+VVTYN+ + +      KE + +  L+L+K      + PD ++Y+TL T L   +
Sbjct: 228 RGLEPNVVTYNVLINSMC----KEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVL 283

Query: 258 ELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           E+ E  A   + M+  T  R + + ++S++     +G+  + L++   M     + N   
Sbjct: 284 EMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVA 343

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I  L+++ + +KA  + DE  S     D    +IL+  +    Q+E AES+ + + 
Sbjct: 344 FNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403

Query: 377 TKGIKP------------C----------------------YTTWELLTWGYLKKGQMEK 402
            +G++P            C                         +  +  G  K G+ + 
Sbjct: 404 HQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKI 463

Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSL 461
             E  K  I      +PD    +   N   + GD+  AE +L  +  +G V    +++SL
Sbjct: 464 AEEFLKDMID--EGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSL 521

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVS 506
           ++ Y   G                   +T+K+L++T EM   +V+
Sbjct: 522 IQGYGAKG-------------------DTEKILELTREMTAKDVA 547



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 99/264 (37%), Gaps = 36/264 (13%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ +   ++++A+A  L+  M +CG                                 
Sbjct: 98  TTLMRALCADRRAAQAVGLLRSMQDCG--------------------------------- 124

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              PDVVTY   +       D +TA +   E+ ++ I+P+ + YS L   Y K    E  
Sbjct: 125 -VRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESV 183

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
               +EM  R    + V Y++L+      G   +  R+   M     + N   Y  +I+S
Sbjct: 184 GKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINS 243

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT--KGIK 381
           + K G   +A ++           D    N L+    +  +++ A +    ++     ++
Sbjct: 244 MCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVR 303

Query: 382 PCYTTWELLTWGYLKKGQMEKVLE 405
           P   T+  +  G  K G M + L+
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQ 327



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/261 (17%), Positives = 105/261 (40%), Gaps = 11/261 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS---------KIRGLSS 125
            R+  +L       H L    WM     ++ +  +     +L++         ++  +  
Sbjct: 300 TRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKK 359

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A    + +      PD  T S L++ + + ++   AE+ + +M   G    P+ Y  +L 
Sbjct: 360 AMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLK 419

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
                G + +   +  E+ +N   D   Y+  +       +K+ AE+   ++    + PD
Sbjct: 420 AMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPD 479

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            ++YS   +++ K      A   LK+M       +   + SL+  Y   G  +++L + +
Sbjct: 480 AVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTR 539

Query: 304 KMMSLFAKMNDAEYTCVISSL 324
           +M +    ++    + +++SL
Sbjct: 540 EMTAKDVALDPKIISTIVTSL 560



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 17/261 (6%)

Query: 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE---KAFLELKKT 238
           LN ++    L + P +L  L   +  D V+YN  LAA   Q   + A    +      + 
Sbjct: 31  LNRHLRLLPLPESPALLSALP--SVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRL 88

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              P+ ISY+TL           +A   L+ M+    R + V Y +L+    +    D  
Sbjct: 89  ASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTA 148

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVP--NIL 355
           + +  +M     + N   Y+C++    K G +E    +++E   +SG G +P V     L
Sbjct: 149 VELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEE---MSGRGIEPDVVMYTAL 205

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           + +     +++ A    + +  +G++P   T+ +L     K+G + + L+  K    S +
Sbjct: 206 IDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNM--SEK 263

Query: 416 KWVPD----HRLITAAYNKLE 432
              PD    + LIT   + LE
Sbjct: 264 GVQPDVVTYNTLITGLSSVLE 284



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 277 KNRVAYSSLLSLYTNMGYKDE---VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
           ++ V+Y+++L+     G  D    +LR+      L ++ N   YT ++ +L       +A
Sbjct: 54  RDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQA 113

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             +    +      D      L+    +   ++ A    N +   GI+P    +  L  G
Sbjct: 114 VGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHG 173

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-H 452
           Y K G+ E V + F++  G  R   PD  + TA  + L   G +  A  ++  +   G  
Sbjct: 174 YCKTGRWESVGKVFEEMSG--RGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLE 231

Query: 453 VSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            +   YN L+ +  K G +   L + + M +  VQ D  T   L
Sbjct: 232 PNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTL 275


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/446 (21%), Positives = 187/446 (41%), Gaps = 12/446 (2%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMEL-QYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           Y  + ++R L +LK +  A E   WME  ++D+ +V+  Y V +  + K  G+  A    
Sbjct: 219 YTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVT--YNVLIHGLCKGGGVLEALEVR 276

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           ++L +K    D  T   L+  + + ++  +   LM +M E GF+      + +++     
Sbjct: 277 KSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKK 336

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G +D    ++ +L +    P++  YN  + A     D + AE  +  +    +  + ++Y
Sbjct: 337 GNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTY 396

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L   + K  + + A +    M +   R+    Y+SL++ +   G       ++ KM++
Sbjct: 397 SILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMIN 456

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     +T +IS   K  + EKA  +Y E               L+    + N++  
Sbjct: 457 EGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAE 516

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A   ++ +V + IKP   T+ ++  GY K   M+K  E  +  + +    VPD       
Sbjct: 517 ASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHN--GLVPDTYTYRPL 574

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
            + L   G +  A+  +  L        E+ Y++LL  Y   G++   L     M +  +
Sbjct: 575 ISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGI 634

Query: 485 QMDAETQKVLKITSEMPVSEVSSIFS 510
            MD     VL I   M   ++  +F 
Sbjct: 635 NMDLVCHAVL-IDGAMKQQDMKRLFG 659



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 167/406 (41%), Gaps = 52/406 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTC---SALLHSYVQNKKSAEAEALMEK 165
           Y++ +D   K   L  AE++F  +  D +R  +T    ++L++ + +    + AE L  K
Sbjct: 396 YSILIDSFCKRGMLDVAESYFGRMIEDGIR--ETIYPYNSLINGHCKFGDLSAAEFLYTK 453

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M   G       +  +++ Y  + Q++K  ++ +E+ +K  +P V T+   +    S N+
Sbjct: 454 MINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNE 513

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A K F E+ + KI P  ++Y+ +   Y K    +KA   L++M       +   Y  
Sbjct: 514 MAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRP 573

Query: 285 LLSLYTNMG----YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           L+S   + G     KD +  + KK +    K+N+  Y+ ++      G   +A +   E 
Sbjct: 574 LISGLCSTGRVSAAKDFIDDLHKKNL----KLNEMCYSALLHGYCGQGRLTEALSASCEM 629

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
                  D     +L+   + +  ++       ++  +G++P    +  +   Y K+G  
Sbjct: 630 IQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSF 689

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL----------------- 443
           +K  EC    +    K  P+    TA  N L + G+ID A HL                 
Sbjct: 690 KKSGECLDLMV--TEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYG 747

Query: 444 --LVTLRNAGHV----------------STEIYNSLLRTYAKAGKM 471
             L +L   G++                +T  YN L+R + K G++
Sbjct: 748 CFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRL 793



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 144/341 (42%), Gaps = 20/341 (5%)

Query: 120 IRGLSSAENF---FENLPDKMRG---PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           I G   A N    FE L D +     PDT +   L+       + + A+  ++ + +   
Sbjct: 540 IEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNL 599

Query: 172 LKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y+ +L+ Y   G+L + +    + +++  + D+V + + +     Q D +    
Sbjct: 600 KLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFG 659

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++    + PD + Y+++   Y K    +K+   L  M    C  N V Y++ ++   
Sbjct: 660 LLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLC 719

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGDP 349
            +G  D    +++KM++     N   Y C + SL K G  ++A +++ E   + G   + 
Sbjct: 720 KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM--LKGLLANT 777

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              NIL+  +    +L  A    + +   GI P   T+  + + + + G +   +E +  
Sbjct: 778 ATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDT 837

Query: 410 AIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
            +   RK V PD    + A+N L     ++GA      LRN
Sbjct: 838 ML---RKGVEPD----SVAFNLLIYGCCVNGALDKAFELRN 871



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 20/370 (5%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD    P TCSA++ S  + K    A+  +  M    F    + YN +++     G + +
Sbjct: 216 PD----PYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLE 271

Query: 194 VPQMLQELK-KNTSPDVVTY-NLWLAACASQ--NDKETAEKAFLELKKTKIDPDWISYST 249
             ++ + L+ K    DVVTY  L L  C  Q  +D        +EL      P   + S 
Sbjct: 272 ALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFV---PTEAAVSG 328

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L     K    + A   + ++ +     N   Y++L++        D+   ++K M S+ 
Sbjct: 329 LVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMN 388

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEW--ESISGTGDPRVPNILLAAYINRNQLEM 367
             +ND  Y+ +I S  K G  + AE+ +     + I  T  P   N L+  +     L  
Sbjct: 389 LPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPY--NSLINGHCKFGDLSA 446

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           AE  Y +++ +G++P  TT+  L  GY K  Q+EK  + +++   + ++  P     TA 
Sbjct: 447 AEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREM--NEKEIAPSVYTFTAL 504

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
              L    ++  A  L   +       TE+ YN ++  Y KA  M     ++E M  + +
Sbjct: 505 IYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGL 564

Query: 485 QMDAETQKVL 494
             D  T + L
Sbjct: 565 VPDTYTYRPL 574



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/364 (18%), Positives = 146/364 (40%), Gaps = 25/364 (6%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN 204
           L+HSY+QN +  +A  ++  M     L      + +LN  +   +   V ++  E +   
Sbjct: 154 LVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAG 213

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             PD  T +  + +     D   A++  L ++  + D   ++Y+ L     K     +A 
Sbjct: 214 VKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEAL 273

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
              K + ++  +++ V Y +L+  +  +   D+ + +  +M+ L     +A  + ++  L
Sbjct: 274 EVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGL 333

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A ++  +        +  V N L+ A      L+ AE  Y  + +  +    
Sbjct: 334 RKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLND 393

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
            T+ +L   + K+G ++     F + I   +R+ +  +  +   + K    GD+  AE L
Sbjct: 394 VTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKF---GDLSAAEFL 450

Query: 444 LVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPV 502
              + N G   +   + +L+  Y K                   D + +K  K+  EM  
Sbjct: 451 YTKMINEGLEPTATTFTTLISGYCK-------------------DLQVEKAFKLYREMNE 491

Query: 503 SEVS 506
            E++
Sbjct: 492 KEIA 495


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 182/436 (41%), Gaps = 48/436 (11%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +V  +R+LK  + AL    W+E +         Y   L L+++ R L   E   E +   
Sbjct: 102 VVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMA 161

Query: 137 MRGP--DTCSALLHSYVQNKKSAEAEALME------------------------------ 164
             GP  +TC  ++ S+V+++K  EA  ++E                              
Sbjct: 162 GFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPM 221

Query: 165 -----KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAA 218
                +M E G+      +  ++ ++   G++D    +L E+K N+ + D+V YN+ +  
Sbjct: 222 LTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDC 281

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
                  + A K F ELK   + PD ++++++  +  K E  ++A    +E++       
Sbjct: 282 FGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPC 341

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
             AY++++  Y ++G  +E   + ++        +   Y C+++ L + G+ E+A  I  
Sbjct: 342 VYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRI-- 399

Query: 339 EWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
             E++     P +   NIL+       +LE A    + +   G+ P   T  ++     K
Sbjct: 400 -LEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCK 458

Query: 397 KGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
             ++++    F   +G   K   PD     +  + L   G ++ A  L   + ++G    
Sbjct: 459 AQRLDEACSIF---LGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPN 515

Query: 456 E-IYNSLLRTYAKAGK 470
             +Y SL+R + K G+
Sbjct: 516 AVVYTSLIRNFFKCGR 531



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/363 (19%), Positives = 153/363 (42%), Gaps = 9/363 (2%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC----SALLHSYVQNKKSAEAEALMEKMSEC 169
           + ++ K   +  A   FE L      P  C    + ++  Y    K  EA +L+E+    
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVP--CVYAYNTMIMGYGSVGKFNEAYSLLERQKRK 371

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229
           G +   + YN +L      G++++  ++L+ +K + +P++ +YN+ +       + E A 
Sbjct: 372 GCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAAL 431

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           K    +K+  + P+ I+ + +     K +  ++A +    ++ + C  + V + SL+   
Sbjct: 432 KVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGL 491

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  ++   +++KM+      N   YT +I +  K G  E    IY E      + D 
Sbjct: 492 GRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDL 551

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            + N  +       ++E   + +  +  +G+ P   ++ +L  G +K G  +   + F +
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE 611

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
                +    D R      +   + G ++ A  LL  ++  G   T + Y S++   AK 
Sbjct: 612 M--KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKI 669

Query: 469 GKM 471
            ++
Sbjct: 670 DRL 672



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 38/307 (12%)

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           ++D + K   +      FE +  +   PD  + S L+H  V+   S +   L  +M E G
Sbjct: 557 YMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQG 616

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAE 229
                  YN +++ +  +G+++K  Q+L+E+K K   P VVTY   +   A  +  + A 
Sbjct: 617 LHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAY 676

Query: 230 KAFLELKKTKIDPDWISYSTLTSLY----------------------------------- 254
             F E K   +D + + YS+L   +                                   
Sbjct: 677 MLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDAL 736

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           +K E  ++A    + M+   C  N V YS +++    +   ++    W++M     K N 
Sbjct: 737 VKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNT 796

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS L ++G   +A+++++ ++S  G  D    N ++    N N+   A   +  
Sbjct: 797 ITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEE 856

Query: 375 LVTKGIK 381
              KG +
Sbjct: 857 TRLKGCR 863



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 135/300 (45%), Gaps = 3/300 (1%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D + K + L  A + F  L  K+  PD  T  +L+    ++ K  +A  L EKM + 
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS 510

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
           G     + Y  ++  +   G+ +   ++ +E+  +  SPD++  N ++       + E  
Sbjct: 511 GQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKG 570

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F E+K   + PD  SYS L    +K    +       EM+++    +  AY+ ++  
Sbjct: 571 RALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDG 630

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G  ++  ++ ++M +   +     Y  VI  L K+   ++A  +++E +S +   +
Sbjct: 631 FCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLN 690

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
             V + L+  +    +++ A      L+ KG+ P   TW  L    +K  ++++ L CF+
Sbjct: 691 VVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQ 750



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 136/319 (42%), Gaps = 28/319 (8%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K+  SP+   YN  L   A   + E  E+   E+      P   +   + + ++K     
Sbjct: 127 KQLHSPE--AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLR 184

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   ++ M K   R    AY++L+   +     D +L + ++M  +  ++    +T +I
Sbjct: 185 EAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLI 244

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               + G  + A ++ DE +S S   D  + N+ +  +    +++MA  F++ L ++G+ 
Sbjct: 245 CVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLV 304

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDI 437
           P   T+  +     K  ++++ +E F++      K VP       AYN +       G  
Sbjct: 305 PDDVTFTSMIGVLCKAERVDEAVELFEEL--DSNKSVP----CVYAYNTMIMGYGSVGKF 358

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKD--------NVQM 486
           + A  LL   +  G + + I YN +L    + GK+   L I+E M+ D        N+ +
Sbjct: 359 NEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILI 418

Query: 487 D-----AETQKVLKITSEM 500
           D      E +  LK+   M
Sbjct: 419 DMLCKAGELEAALKVQDSM 437


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQ 196
           T + LL     +K++++A + ++ +M+E G +     YN++LN       S   L+ +  
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHM 183

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M  +    + PDVV+Y   +     + D + A   + E+    I PD ++YS++ +   K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 243

Query: 257 MELPEKAATTLKE------------MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +  +K  +  KE            M +   + + + YS+L+  Y   G  DE +++   
Sbjct: 244 GQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSG 303

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+S+  K N   Y+ +I+   K+   E A  ++ E ES   + D    NI+L       +
Sbjct: 304 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 363

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              A+  Y R+   G +   +T+ ++  G  K    +  L+ F+ 
Sbjct: 364 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 408



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 53/314 (16%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQE-L 201
           LL+      +S EA  L+  M++      P   + Y  ++N +   G  DK      E L
Sbjct: 164 LLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 202 KKNTSPDVVTYNLWLAA-CASQN-DKE----------TAEKAFLELKKTKIDPDWISYST 249
            +   PDVVTY+  +AA C  Q  DK            +EK F  + +  + PD I+YST
Sbjct: 224 DRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 283

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L   Y      ++A   L  M     + N V YS+L++ Y  +   ++ L ++K+M S  
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---------------------- 347
              +   Y  ++  L +      A+ +Y      SGT                       
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITE-SGTQIELSTYNIILHGLCKNKLTDDA 402

Query: 348 --------------DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
                         + R  NI++ A +   + + A+  +    + G+ P Y T+ L+   
Sbjct: 403 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 462

Query: 394 YLKKGQMEKVLECF 407
            + +G +E++ + F
Sbjct: 463 IIGQGLLEELDQLF 476



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 93/226 (41%), Gaps = 3/226 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T S L+  Y    K  EA  L+  M   G     + Y+ ++N Y    +++    +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 335

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E++ +  SPD++TYN+ L           A++ ++ + ++    +  +Y+ +     K
Sbjct: 336 FKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 395

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +L + A    + +     +     ++ ++     +G  DE   ++    S     N   
Sbjct: 396 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 455

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           Y  +  +++  G  E+ + ++   E    T D  + N ++   + R
Sbjct: 456 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQR 501


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 141/315 (44%), Gaps = 17/315 (5%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLW 215
           EA  L  +M E G       YN M++ + S G+     ++L E+  +    PDV T+N+ 
Sbjct: 228 EACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNIL 287

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +           A      + K    PD +SY+ L + Y       +A     +M +RT 
Sbjct: 288 IDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTA 347

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             N ++Y +L++ Y  +   DE + +  +M +     +   Y C++  L K G      +
Sbjct: 348 LPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSG-----RS 402

Query: 336 IYDEW---ESISGTGDPR---VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           +Y EW   E++  +G P      N+LL  Y    + + A + +  ++  GI P   T+ +
Sbjct: 403 LY-EWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNI 461

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           L  G  K G+++   E F+  + S +   P+ R      + L ++G +D AE LL  + N
Sbjct: 462 LLDGLCKSGRLKYAKEIFQ--LLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVN 519

Query: 450 AGHVSTEI-YNSLLR 463
             ++   I +++++R
Sbjct: 520 NNYLPNYITFDTIVR 534



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 133/337 (39%), Gaps = 38/337 (11%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123
           E G  +  Y  N ++     + R++ A+++ + M ++  +      + + +D + K+  +
Sbjct: 238 ENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRV 297

Query: 124 SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A N    +  +   PD  S  AL++ Y  +    EA+ + +KM E   L   + Y  +
Sbjct: 298 SEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTL 357

Query: 182 LNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +N Y     +D+   +L E+  KN  PD VTYN  L    S++ +   E   +E  +   
Sbjct: 358 INGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDG-LSKSGRSLYEWDLVEAMRASG 416

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P                                   + + Y+ LL  Y      D+ L 
Sbjct: 417 QP----------------------------------ADLITYNVLLDDYFKHEKFDKALA 442

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +++ ++ +    N   Y  ++  L K G  + A+ I+    +     + R  NI++    
Sbjct: 443 LFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLC 502

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
               L+ AE+   ++V     P Y T++ +    L K
Sbjct: 503 KEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAILVK 539



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 13/337 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGF-LKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T S L++++ Q  +   A +L+  + + GF +   +    M  L +    L+ V  + + 
Sbjct: 107 TFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEY 166

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D V Y   +           A + F ++KK ++ P+ I Y+T+     K  L 
Sbjct: 167 VDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLV 226

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTC 319
           ++A     EM +     +  +Y+S++  + ++G     +++  +M+       D   +  
Sbjct: 227 DEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNI 286

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L KLG   +A N+           D    N L+  Y     +  A+  ++++V + 
Sbjct: 287 LIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERT 346

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
             P   ++  L  GY K   +++ +    +     +  VPD    T  YN L +     G
Sbjct: 347 ALPNVISYCTLINGYCKVRMVDEAMVLLTEM--HNKNLVPD----TVTYNCLLDGLSKSG 400

Query: 440 AE----HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
                  L+  +R +G  +  I YN LL  Y K  K 
Sbjct: 401 RSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKF 437


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 181/417 (43%), Gaps = 42/417 (10%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ + + K   EA 
Sbjct: 221 VSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREAR 280

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAAC 219
            L+ +M   G +   + Y+ +L++Y+ NG+  +   +  E+ +   P D+ T N+ +   
Sbjct: 281 LLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVY 340

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
              +  + A++ F  ++K  I+P  +SY+TL  +Y + EL  +A    + M+++   +N 
Sbjct: 341 GQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNV 400

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y++++ +Y      ++   + ++M +   + N   Y+ +IS   K G+ ++A  ++ +
Sbjct: 401 VTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQK 460

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL--------- 390
             S     D  +   ++ AY     +  A+   + L      P  T   +L         
Sbjct: 461 LRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEA 520

Query: 391 TWGY---LKKGQME-------------------KVLECFKKAIGSVRKWVPDHRLITAAY 428
           TW +      G+++                    V+E F K  G+   + PD  +I    
Sbjct: 521 TWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGA--GYFPDSNVIALVL 578

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKD 482
           N   +  + + A+ +   +   G V S E++  +L  Y   G   ++  + ER+  D
Sbjct: 579 NACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSD 635



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/321 (19%), Positives = 138/321 (42%), Gaps = 42/321 (13%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SP V  YN+ +         E A   F E+++  + PD  +YSTL + + K  + + A +
Sbjct: 152 SPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALS 211

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK---------------MMSLFA 310
            L++ME+     + V YS+L+ L   +    + + I+ +               M+++F 
Sbjct: 212 WLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFG 271

Query: 311 K-------------------MND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           K                   M D   Y+ ++S  V+ G++ +A +++ E   +    D  
Sbjct: 272 KAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLT 331

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-K 409
             N+++  Y   +  + A+  +  +   GI+P   ++  L   Y +     + +  F+  
Sbjct: 332 TCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLM 391

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
               + + V  +  +   Y K  E    + A +L+  ++N G     I Y++++  + KA
Sbjct: 392 QRKDIEQNVVTYNTMIKIYGKSLEH---EKATNLVQEMQNRGIEPNAITYSTIISIWDKA 448

Query: 469 GKM--PLIIVERMQKDNVQMD 487
           GK+    ++ ++++   +++D
Sbjct: 449 GKLDRAAMLFQKLRSSGIEID 469


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/457 (22%), Positives = 172/457 (37%), Gaps = 53/457 (11%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLD 115
           +R+ +E G+ V       +VR L +  R + AL + + ++   L+ DI L    Y V +D
Sbjct: 205 LRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVL----YNVCID 260

Query: 116 LISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLK 173
              K   +  A  FF  L  +   PD  S  +++    +  + +EAE L  +M     + 
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVP 320

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
           C   YN M+  Y S GQ +   ++L +LK +   P VV++N  L  C  +  K       
Sbjct: 321 CAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSIL-TCLGKKRKVDEALTL 379

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME--------------------- 271
            E  K   +P+  +Y+ +  +       E+A     EME                     
Sbjct: 380 FEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKA 439

Query: 272 --------------KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
                         +R C  N V Y SL+      G  D+  R+++ M+      N   Y
Sbjct: 440 KKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVY 499

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T +I +    G  E    I+ E        D  + N  +        +E   + +  +  
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG 559

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
            G  P   ++ +L  G  K GQ  +    F       + +  D R   A  +   + G +
Sbjct: 560 YGFLPDVRSYSILIHGLTKAGQARETSSIFHAM--KQQGFALDARAYNAVVDGFCKSGKL 617

Query: 438 DGAEHLLVTL---RNAGHVSTEIYNSLLRTYAKAGKM 471
           D A  +L  +   R    V+T  Y S++   AK  ++
Sbjct: 618 DKAYEVLEEMKVKRVPPTVAT--YGSIIDGLAKIDRL 652



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 152/391 (38%), Gaps = 67/391 (17%)

Query: 42  GRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQY 101
           G     +VY        M   KE+GH + K E+NR                       Q 
Sbjct: 491 GHNANPVVYTSLIRNFFMHGRKEDGHKIFK-EMNR--------------------RGCQP 529

Query: 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEA 159
           D+ L++     ++D + K   +      FE++      PD  + S L+H   +  ++ E 
Sbjct: 530 DLTLLN----TYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARET 585

Query: 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA 218
            ++   M + GF      YN +++ +  +G+LDK  ++L+E+K K   P V TY   +  
Sbjct: 586 SSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDG 645

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT---- 274
            A  +  + A   F E K   I+ + I YS+L   + K+   ++A   L+EM K+     
Sbjct: 646 LAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 705

Query: 275 -------------------------------CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
                                          C  N   YS L++    +   ++    W+
Sbjct: 706 VYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQ 765

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           +M       N   YT +I+ L K+G    A ++++ +++  GT D    N L+    + N
Sbjct: 766 EMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHAN 825

Query: 364 QLEMAESFYNRLVTKG----IKPCYTTWELL 390
           +   A   +     KG    +K C +  + L
Sbjct: 826 RAIEAYHVFEETRLKGCRINVKACISLLDAL 856



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 145/332 (43%), Gaps = 11/332 (3%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGF-LKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           + L+ +  + ++   A  L+ +M E G+ +  PL +  ++      G+++    ++ E+K
Sbjct: 186 TVLIGAMAEARQPERALELLRQMQEVGYEVGVPL-FTTLVRALAREGRVEGALALVDEVK 244

Query: 203 KNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +   PD+V YN+ +       + + A K F ELK   + PD +SY+++  +  K     
Sbjct: 245 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLS 304

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A     +ME         AY++++  Y + G  +   ++  ++       +   +  ++
Sbjct: 305 EAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSIL 364

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKG 379
           +    LG+  K +     +E++    +P     NI++       ++E A    + +   G
Sbjct: 365 TC---LGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAG 421

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           + P   T  ++     K  + E   E F+ A  S R   P+     +  + L ++G++D 
Sbjct: 422 LFPNLLTVNIMVDRLCKAKKFEPAYEMFETA--SQRGCNPNSVTYCSLIDGLGKKGNVDD 479

Query: 440 AEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGK 470
           A  L   + + GH  +  +Y SL+R +   G+
Sbjct: 480 AYRLFENMLDTGHNANPVVYTSLIRNFFMHGR 511



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 66/325 (20%)

Query: 175 PLP---YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-------QND 224
           PLP   YN +L  ++S+  L  + ++L+E+       V+ Y +   ACA           
Sbjct: 111 PLPADAYNAVLP-FLSH-DLAAMEKVLEEMS------VLGYGVPNPACADLVSALVRTRR 162

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + AE+    +++ K  P + +Y+ L     +   PE+A   L++M++       V Y  
Sbjct: 163 LDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE-------VGYEV 215

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
            + L+T +                            + +L + G  E A  + DE +   
Sbjct: 216 GVPLFTTL----------------------------VRALAREGRVEGALALVDEVKGSC 247

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D  + N+ +  +     ++MA  F++ L ++G+KP   ++  + W   K G++ +  
Sbjct: 248 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAE 307

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
           E F +      + VP       AYN +       G  + A  LL  L+  G + + + +N
Sbjct: 308 ELFGQM--ETERAVP----CAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFN 361

Query: 460 SLLRTYAKAGKM--PLIIVERMQKD 482
           S+L    K  K+   L + E M+KD
Sbjct: 362 SILTCLGKKRKVDEALTLFEAMKKD 386



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/295 (18%), Positives = 124/295 (42%), Gaps = 23/295 (7%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           R  +      K++G  +     N +V    K  +   A EV E M+++  +      Y  
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK-RVPPTVATYGS 641

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD----TCSALLHSYVQNKKSAEAEALMEKMSE 168
            +D ++KI  L  A   FE    K +G +      S+L+  + +  +  EA  ++E+M +
Sbjct: 642 IIDGLAKIDRLDEAYMLFEEA--KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMK 699

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKET 227
            G       +N +++  +   ++++     Q +K+   SP+  TY++ +           
Sbjct: 700 KGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNK 759

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A   + E++K  + P+ ++Y+T+ +   K+     A +  +  +      +  ++++L+ 
Sbjct: 760 AFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIE 819

Query: 288 LYTNMGYKDEVLRIW------------KKMMSLFAKMNDAEYTCV-ISSLVKLGE 329
             ++     E   ++            K  +SL   +N AE  C+  +++V  GE
Sbjct: 820 GMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAE--CLEQAAVVGFGE 872


>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
 gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 148/346 (42%), Gaps = 20/346 (5%)

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
           M   +T + ++H+  ++ K  EA ++  ++ + G     + +N M++     G +D   +
Sbjct: 235 MENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDMDLALK 294

Query: 197 MLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           ++++++     +  P+ VTYN  +           AE+   E+ K  I+P+  +Y+T+  
Sbjct: 295 LVRKMEIMSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIE 354

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            Y +    E+A     EM +R    N V Y+S++      G  D    +       F  M
Sbjct: 355 GYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLV-------FTDM 407

Query: 313 NDAE-----YTCVI--SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           +D +     +TC I    L + G    A    ++    +   D    NIL+      N  
Sbjct: 408 SDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNF 467

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             A     R+  +G+ P   T+  L  G+ K+G +E  ++ + K +    K  P+  +  
Sbjct: 468 AAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEK--PNLLVYN 525

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           +  N L + G +D A  L+  L+  G V T  YN+L+  Y   GK 
Sbjct: 526 SIINGLCKDGLVDVARSLVDVLQRMGLVDTITYNTLINGYFNCGKF 571



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 118/270 (43%), Gaps = 6/270 (2%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A   F ++ DK    D  TCS L     +N     A   + ++ E   ++    +N 
Sbjct: 397 VDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNI 456

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++N    +       Q+L  +  +   PDVVT+   +     + + E+A + + ++ K +
Sbjct: 457 LINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGE 516

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+ + Y+++ +   K  L +  A +L ++ +R    + + Y++L++ Y N G  D+  
Sbjct: 517 EKPNLLVYNSIINGLCKDGLVD-VARSLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAF 575

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           ++   M +     + A Y  VI  L K G  ++A+ +      + G     +    L   
Sbjct: 576 KLSTLMQNAGILASSATYNTVIKFLCKFGCVQEAKELM-TMMVLWGVLPDNITYRTLVIN 634

Query: 360 INRN-QLEMAESFYNRLVTKGIKPCYTTWE 388
           IN+N   E     ++ +V KG+ P   T+E
Sbjct: 635 INKNCSAEEVIELHDYMVLKGVVPDKLTYE 664



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 12/202 (5%)

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           C  N   + +L+   T +G       + KK+      +    +   +S L+K+ E  +  
Sbjct: 164 CESNHAVFDALVRACTQIGATVGACEVIKKLQIEGCWVTIHAWNNFLSHLIKVNEIHRFW 223

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +Y E  S     +    N+++ A     +L+ A S + R++  GI P   T+ ++  G 
Sbjct: 224 IVYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGA 283

Query: 395 LKKGQMEKVLECFKK----AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL---LVTL 447
            K G M+  L+  +K    + GS++   P+     +  +   + G I  AE L   ++ +
Sbjct: 284 CKMGDMDLALKLVRKMEIMSAGSIK---PNSVTYNSLIDGFCKIGGITVAEELRNEMMKI 340

Query: 448 RNAGHVSTEIYNSLLRTYAKAG 469
               +V T  Y +++  Y++AG
Sbjct: 341 DIEPNVRT--YATMIEGYSRAG 360


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 187/443 (42%), Gaps = 22/443 (4%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH---LDLISKIRGLSS 125
           V +++ N +   L   K+ +HAL    W+E      L   D   H   ++++ +   L+ 
Sbjct: 116 VPQFDHNLVYNVLHAAKKSEHALNFFRWVE---RAGLFQHDRETHFKIIEILGRASKLNH 172

Query: 126 AENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A     ++P+K      D    L+ SY +     EA  + +KM E G  +    Y+ +  
Sbjct: 173 ARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFK 232

Query: 184 LYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
             +  G+     +     L +   P   TYN+ L         ETA++ + ++K   I P
Sbjct: 233 EIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISP 292

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D ++Y+T+ + Y + ++ E+A     EM+ +      ++Y++++  Y ++   D+ LR++
Sbjct: 293 DVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLF 352

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI---LLAAY 359
           ++M +   K ND  Y+ ++  L    +  +A  I  E   ++    P+  +I   LL+  
Sbjct: 353 EEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEM--VTRHFAPKDNSIFMRLLSCQ 410

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
                L+ A      ++   I      + +L     K G  ++ ++  +  +       P
Sbjct: 411 CKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRP 470

Query: 420 DHRL--ITAAYN----KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL 473
              L    +AYN     L   G    A+     L   G      +N+L+R +AK G   L
Sbjct: 471 QSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDL 530

Query: 474 I--IVERMQKDNVQMDAETQKVL 494
              +++ M +  V  DAE+ K+L
Sbjct: 531 AFEMLKIMGRRGVSRDAESYKLL 553



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 52/340 (15%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLA 217
           A+   E M   G     + YN M+N Y     +++  Q   E+K KN +P V++Y   + 
Sbjct: 278 AKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIK 337

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME-LPEKAATTLKEMEKRT-C 275
              S +  + A + F E+K     P+ I+YSTL       E LPE A   L EM  R   
Sbjct: 338 GYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPE-ARKILTEMVTRHFA 396

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA-- 333
            K+   +  LLS     G  D  + + K M+ L        Y  +I +  K G +++A  
Sbjct: 397 PKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVK 456

Query: 334 --ENIYDEWESISGTG----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-- 385
             EN+ ++   +        +    N+++    N  Q   A++F+ +L+ KGI+      
Sbjct: 457 LLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFN 516

Query: 386 --------------------------------TWELLTWGYLKKGQMEKVLECFKKAIGS 413
                                           +++LL   YL KG+        K A+ S
Sbjct: 517 NLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADA----KTALDS 572

Query: 414 V--RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           +      PD  L  +    L   G +  A  ++ ++ + G
Sbjct: 573 MIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKG 612


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 17/285 (5%)

Query: 142 TCSALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQ 196
           T + LL     +K++++A + ++ +M+E G +     YN++LN       S   L+ +  
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHM 183

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M  +    + PDVV+Y   +     + D + A   + E+    I PD ++YS++ +   K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 243

Query: 257 MELPEKAATTLKE------------MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +  +K  +  KE            M +   + + + YS+L+  Y   G  DE +++   
Sbjct: 244 GQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSG 303

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+S+  K N   Y+ +I+   K+   E A  ++ E ES   + D    NI+L       +
Sbjct: 304 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 363

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              A+  Y R+   G +   +T+ ++  G  K    +  L+ F+ 
Sbjct: 364 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 408



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 53/314 (16%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQE-L 201
           LL+      +S EA  L+  M++      P   + Y  ++N +   G  DK      E L
Sbjct: 164 LLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 202 KKNTSPDVVTYNLWLAA-CASQN-DKE----------TAEKAFLELKKTKIDPDWISYST 249
            +   PDVVTY+  +AA C  Q  DK            +EK F  + +  + PD I+YST
Sbjct: 224 DRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 283

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L   Y      ++A   L  M     + N V YS+L++ Y  +   ++ L ++K+M S  
Sbjct: 284 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 343

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---------------------- 347
              +   Y  ++  L +      A+ +Y      SGT                       
Sbjct: 344 VSPDIITYNIILQGLFQTRRTAAAKELYVRITE-SGTQIELSTYNIILHGLCKNKLTDDA 402

Query: 348 --------------DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
                         + R  NI++ A +   + + A+  +    + G+ P Y T+ L+   
Sbjct: 403 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 462

Query: 394 YLKKGQMEKVLECF 407
            + +G +E++ + F
Sbjct: 463 IIGQGLLEELDQLF 476



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 3/227 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T S L+  Y    K  EA  L+  M   G     + Y+ ++N Y    +++    +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 335

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E++ +  SPD++TYN+ L           A++ ++ + ++    +  +Y+ +     K
Sbjct: 336 FKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 395

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            +L + A    + +     +     ++ ++     +G  DE   ++    S     N   
Sbjct: 396 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 455

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           Y  +  +++  G  E+ + ++   E    T D  + N ++   + R 
Sbjct: 456 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 502


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFL 233
           +N ++  +   G LDK  + L  ++ +     +  +VT    L  C      E AE  F 
Sbjct: 274 WNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGR---TEEAEAIFE 330

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E++   + P   +Y+ L   Y+K  L   A   + EME+     N   YS L+  Y N  
Sbjct: 331 EMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAE 390

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             +    + K+M +   + N   ++ +++S    GE++K   +  E E      D    N
Sbjct: 391 RWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYN 450

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L+  +   N L+ A + ++R++++GI+P   TW  L   + K G+ ++  E F++ +  
Sbjct: 451 VLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMME- 509

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            + ++P +       N   +Q   D  ++LL  +R+ G +   + Y +L+  Y K+G+ 
Sbjct: 510 -KGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRF 567



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 156/344 (45%), Gaps = 6/344 (1%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYN 213
           ++ EAEA+ E+M + G       YN +L  Y+  G L     ++ E++++   P+  TY+
Sbjct: 321 RTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYS 380

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           L + A  +    E+A     E++ + + P+   +S + + Y      +K    L+EME  
Sbjct: 381 LLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDS 440

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
             R +R+ Y+ L+  +      D  +  + +M+S   + +   +  ++    K G+ ++A
Sbjct: 441 GVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRA 500

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           E +++E             NI++ ++ ++ + +  ++    + ++G+ P   T+  L   
Sbjct: 501 EELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDI 560

Query: 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-H 452
           Y K G+ +  +EC      +  K  P   +  A  N   ++G  D A      +R+ G  
Sbjct: 561 YGKSGRFDDAIECLDDMKAAGLK--PSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLK 618

Query: 453 VSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVL 494
            S    NSL+  + K  +     ++++ M++++++ D  T   L
Sbjct: 619 PSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTL 662



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 4/289 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA I +++ +      + Y  +RI+   R    ++   +V   ME    ++     Y V 
Sbjct: 394 SARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREME-DSGVRPDRIFYNVL 452

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K   L  A   F+ +  +   PDT +   L+  + +  K   AE L E+M E G+
Sbjct: 453 IDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGY 512

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
           L C   +N M+N +    + D V  +L  ++ +   P+ VTY   +         + A +
Sbjct: 513 LPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIE 572

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++K   + P    Y+ L + Y +  L ++A +    M     + + +A +SL++ + 
Sbjct: 573 CLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFG 632

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                 E   + + M     K +   YT ++ +L+ + +F+K  ++Y+E
Sbjct: 633 KDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEE 681



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+ +Y   ++   A  ++++M           ++ +L  Y   G+  K  Q+L+E+
Sbjct: 378 TYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREM 437

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   PD + YN+ +      N  + A   F  +    I+PD I+++TL   + K    
Sbjct: 438 EDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKH 497

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A    +EM ++        ++ +++ + +    D+V  +   M S     N   YT +
Sbjct: 498 DRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K G F+ A    D+ ++        + N LL AY  R   + A S +  +   G+
Sbjct: 558 IDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGL 617

Query: 381 KP 382
           KP
Sbjct: 618 KP 619



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 125/312 (40%), Gaps = 10/312 (3%)

Query: 189 GQLDKVPQ-MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           GQ +K+ +  L   K+N +P  +TYN  ++ACA  ND E A      +++     D ++Y
Sbjct: 180 GQSEKLYEAFLLSQKQNLTP--LTYNALISACARNNDIEKALNLICRMREDGYPSDLVNY 237

Query: 248 STLTSLYIKMELPEKA--ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           S +    +K      +      +E+++     +   ++ ++  +   G  D+ L     +
Sbjct: 238 SLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVV 297

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
                 +  A    VI  L   G  E+AE I++E          R  N LL  Y+    L
Sbjct: 298 QGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLL 357

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             AE   + +   G+ P   T+ LL   Y    + E      K+   S  +  P+  + +
Sbjct: 358 RDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQ--PNAYVFS 415

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKD 482
                  ++G+      +L  + ++G     I YN L+ T+ K   +   +   +RM  +
Sbjct: 416 RILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSE 475

Query: 483 NVQMDAETQKVL 494
            ++ D  T   L
Sbjct: 476 GIEPDTITWNTL 487


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 157/324 (48%), Gaps = 11/324 (3%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSY 150
           W++ Q +   VSGD  ++ +LI   R L   S A + F  L      PD  +  ++++ +
Sbjct: 191 WLQ-QMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVF 249

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDV 209
            + +   EA  L+ +M E G L   + Y+ +L++Y+ N +  +   +  E+ + N S D+
Sbjct: 250 GKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDL 309

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           +T N+ +      +  + A++ F  ++K  I+P+ +SY+TL  +Y + EL  +A    + 
Sbjct: 310 MTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRL 369

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+++   +N V Y++++ +Y      ++   + ++M     + N   Y+ +IS   K G+
Sbjct: 370 MQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGK 429

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++A  ++ +  S     D  +   ++ AY     +  A+   + L    I P  T  ++
Sbjct: 430 LDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRDTAIKI 489

Query: 390 LTWGYLKKGQMEKVLECFKKAIGS 413
           L     + G++E+    F++A  +
Sbjct: 490 LA----RAGRIEEATWVFRQAFDA 509



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 15/293 (5%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SP V  YN+ L         + A   F E+++  + PD  +YSTL + + K  + +++  
Sbjct: 131 SPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLF 190

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L++ME+     + V YS+L+ L   +    + + I+ ++       +   Y  +I+   
Sbjct: 191 WLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFG 250

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K   F +A  +  E   +    D    + LL+ Y+   +   A S +  +          
Sbjct: 251 KARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLM 310

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-----VPDHRLITAAYNKLEEQGDIDGA 440
           T  ++   Y   GQ++ V E   +   S+RK      V  +  +   Y + E  G+   A
Sbjct: 311 TCNIMIDVY---GQLDMVKEA-DRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGE---A 363

Query: 441 EHLLVTL-RNAGHVSTEIYNSLLRTYAKA--GKMPLIIVERMQKDNVQMDAET 490
            HL   + R     +   YN++++ Y K+   +    +V+ MQK  ++ +A T
Sbjct: 364 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAIT 416



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 119/298 (39%), Gaps = 34/298 (11%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D+  ++  +  A+  F ++      P+  S   LL  Y + +   EA  L   M   
Sbjct: 314 IMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRK 373

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
              +  + YN M+ +Y  + + +K   ++QE+ K+   P+ +TY+  ++        + A
Sbjct: 374 EIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRA 433

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME-----------KRTCRK 277
              F +L+ + ++ D + Y T+   Y +  L   A   L +++           K   R 
Sbjct: 434 AMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRDTAIKILARA 493

Query: 278 NRV--------------------AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            R+                     +  ++ L++       V+ +++KM       +    
Sbjct: 494 GRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVI 553

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
             V+++  KL EFEKA+ +Y E +         V   +L+ Y  R    M ES + +L
Sbjct: 554 ALVLNAYGKLREFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFIMVESLFEKL 611


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 156/354 (44%), Gaps = 6/354 (1%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           +L+     N      +++  K  E G +      N ++  + + G +++V  + + +K+N
Sbjct: 149 SLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKEN 208

Query: 205 -TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
              P + +YN  +    +    E+AE+ F  ++  KI PD ++Y+T+   Y ++    KA
Sbjct: 209 GIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKA 268

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              LK ME R    +++ Y +L+      G  D  L ++ +M     ++    Y+ VI  
Sbjct: 269 FEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGG 328

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L K G+  +   +++   S     +  +   L+ +      +  A   + R+  +G++P 
Sbjct: 329 LCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPD 388

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             T+ ++     K G++++ LE  +   G  +    +    ++  + L + G +D AE +
Sbjct: 389 EVTYGVIVNSLCKSGRLDEALEYMEFCSG--KGVAVNAMFYSSLIDGLGKSGRVDEAERI 446

Query: 444 LVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
              +   G    +  YN+L+   AK GK+   L + +RM+ D       T  +L
Sbjct: 447 FYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTIL 500



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/448 (19%), Positives = 166/448 (37%), Gaps = 74/448 (16%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISK 119
           K+KE G  +  Y  N +++    L   +  L V   M E   +  L S ++ V+  + SK
Sbjct: 169 KFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSK 228

Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
              + SAE  FE + +   GPD  +                                 YN
Sbjct: 229 F--IESAERVFEVMENGKIGPDVVT---------------------------------YN 253

Query: 180 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            M+  Y   G+  K  + L+ ++ +N +PD +TY   + AC ++ D ++    + E+ + 
Sbjct: 254 TMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEK 313

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            ++     YS +     K     +  T  + M  + C+ N   Y++L+      G   E 
Sbjct: 314 GLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEA 373

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLG---------EF------------------- 330
           + ++K+M     + ++  Y  +++SL K G         EF                   
Sbjct: 374 MLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDG 433

Query: 331 -------EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
                  ++AE I+ E        D    N L+ A     +++ A +   R+   G    
Sbjct: 434 LGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQT 493

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
             T+ +L  G  ++ + E+ L  +   I   +   P      A    L   G +  A  +
Sbjct: 494 VYTYTILITGLFREHRNEEALTLWDLMID--KGITPTAAAFRALSTGLCLSGKVARACKI 551

Query: 444 LVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           L  +   G +    ++ ++    KAG++
Sbjct: 552 LDEMAPMGVIPETAFDDMINILCKAGRI 579


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 139/316 (43%), Gaps = 5/316 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + K+    SA    + + +K   P+  T S LLHS+ +N    +A A++++MS
Sbjct: 354 YNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMS 413

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             GF      YN ++     +G+LD+  +++QE+K +   PD+ TYN  +    + +  +
Sbjct: 414 AKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMD 473

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            AE  F  L +  +  + I+Y+TL    +     ++      EM    C  + V+Y+ L+
Sbjct: 474 EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLI 533

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  D  + + ++MM+   K N+  Y  +I+ L K G+   A  +  E  +   T
Sbjct: 534 KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 593

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    N L+           A +   +L  + + P   T+ +L   + K   ++     
Sbjct: 594 PDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASML 653

Query: 407 FKKAIGSVRKWVPDHR 422
             KA+      VP+ R
Sbjct: 654 LDKAVSG--GIVPNER 667



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 10/317 (3%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217
           EA  L+++M   G     + Y  +L       Q D+   ML  + +    +VV  N  + 
Sbjct: 268 EAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEV---NVVMLNTVIR 324

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
            C ++     A + +  +      PD  +Y+ L     K+     A   L EME++ C  
Sbjct: 325 GCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAP 384

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YS+LL  +   G  D+   +  +M +    MN   Y  +I +L K G+ ++A  + 
Sbjct: 385 NIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLV 444

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            E +S     D    N ++    N +Q++ AE  +  L+ +G+     T+  L    L  
Sbjct: 445 QEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHS 504

Query: 398 GQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
           G+ ++ L    + +  G     V  + LI A    L ++G++D +  LL  +   G    
Sbjct: 505 GRWQEGLRLANEMVLHGCPLDVVSYNGLIKA----LCKEGNVDRSMMLLEEMMTKGIKPN 560

Query: 456 EI-YNSLLRTYAKAGKM 471
              YN L+    KAGK+
Sbjct: 561 NFSYNMLINELCKAGKV 577



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 51/293 (17%), Positives = 109/293 (37%), Gaps = 9/293 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L+    P   T+ +   A         A      + +    PD + Y T+    +     
Sbjct: 172 LRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGV 231

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +AAT L EM    C  +   ++ ++     +G+  E  R+  +MM      +   Y  +
Sbjct: 232 AEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFL 291

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L +  + ++A  +      ++      + N ++   +   +L  A   Y  + +KG 
Sbjct: 292 LRGLCRTRQADEAYAMLGRVPEVNVV----MLNTVIRGCLAEGKLARATELYEMMGSKGC 347

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+ +L  G  K G+    +    +     +   P+    +   +     G  D A
Sbjct: 348 PPDVHTYNILMHGLCKLGRCGSAVRMLDEM--EEKGCAPNIVTYSTLLHSFCRNGMWDDA 405

Query: 441 EHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
             +L  +   G  ++++ YN ++    K GK+   + +V+ M+    + D  T
Sbjct: 406 RAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICT 458


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 14/334 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           ++LL  YV+ K  A  + L+E M   G       Y  +++   + G + KV  ++ E+K 
Sbjct: 171 NSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKA 230

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           KN + DV  Y   + A     +   A + F E     I+P+  +Y  L + + K+   E 
Sbjct: 231 KNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEA 290

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L +M+ R    N++ +++++  Y   G  D  L++   M  +  +++   Y  +  
Sbjct: 291 AEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLAC 350

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPN-----ILLAAYINRNQLEMAESFYNRLVT 377
            L ++    +A+ +      +   G P  PN      L++ +     +  A   +  +  
Sbjct: 351 GLCRVNRMAEAKTL---LHIMIEKGVP--PNYVTYTTLISIHCKEGDMVEARRLFREMAG 405

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           KG  P   T+ ++  GY+KKG + +  E F+K +   +  VPD     +  +     G +
Sbjct: 406 KGAMPSVVTYNVMMDGYIKKGSIREA-ERFRKEM-EKKGLVPDVYTYASLVHGHCVNGKV 463

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           D A  L   +++ G     + Y +L+   AK G+
Sbjct: 464 DVALKLFEEMKHRGTEPNVVAYTALISGLAKEGR 497



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 143/344 (41%), Gaps = 6/344 (1%)

Query: 92  EVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHS 149
           E+ E ME    I+   G Y + +D +S    +S  E   + +  K    D    +A++++
Sbjct: 188 ELLEIME-NGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINA 246

Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPD 208
           Y +      A  + ++    G       Y  ++N +   GQ++    +L +++ +    +
Sbjct: 247 YCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHN 306

Query: 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
            + +N  +     Q   + A K    ++K  I+ D  +Y+TL     ++    +A T L 
Sbjct: 307 QIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLH 366

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
            M ++    N V Y++L+S++   G   E  R++++M    A  +   Y  ++   +K G
Sbjct: 367 IMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKG 426

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
              +AE    E E      D      L+  +    ++++A   +  +  +G +P    + 
Sbjct: 427 SIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYT 486

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
            L  G  K+G+ E+  + +   + +     PD  L +A    L 
Sbjct: 487 ALISGLAKEGRSEEAFQLYDDMLKA--GLTPDDSLYSALVGSLH 528


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 144/306 (47%), Gaps = 8/306 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +  + KI+   +A  F+ ++  K   PD   C A++      +K   A  L+  + 
Sbjct: 152 YTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVM 211

Query: 168 ECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDK 225
           + G +K   L YN +++ +   G++DK   +   +++N   PD+VTYN++L     +   
Sbjct: 212 KSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELML 271

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA--ATTLKEMEKRTCRKNRVAYS 283
           + A+K    ++++ I+PD  SY+ L     K   P+KA    T K   K  C  + V+Y+
Sbjct: 272 DDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLC--DVVSYN 329

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +++  +  +G      +++++M       +   +T  I + +  G F  A+ + D+   +
Sbjct: 330 TIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEM 389

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
             + D      ++       ++EMA S +  +V +GI P   ++  L  G+ K  ++ + 
Sbjct: 390 GLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEA 449

Query: 404 LECFKK 409
           +  +++
Sbjct: 450 MHLYEE 455



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 114/252 (45%), Gaps = 6/252 (2%)

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y +  + Y+K  L +KA     EM +  CR   + Y+  + +  N    D     + +M 
Sbjct: 12  YRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMG 71

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
           +    ++   Y+  I+ L K+  F   + +  + E+++   D    NI L       +++
Sbjct: 72  TRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRID 131

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
           +A   + ++V  G KP   T+ ++  G  K  + +  ++ ++  I   + + PD++   A
Sbjct: 132 LALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIH--KGFSPDNKACGA 189

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKM--PLIIVERMQKD 482
               L +   +D A  L++ +  +G V  ST +YN+L+  + +AG++     I   M+++
Sbjct: 190 IVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRN 249

Query: 483 NVQMDAETQKVL 494
             + D  T  V 
Sbjct: 250 GCEPDLVTYNVF 261



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN ++  +   G      ++ +E+ +K   PDVVT+ +++ A   +     A+K   +
Sbjct: 326 VSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQ 385

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           + +  + PD I Y+T+     K    E A +   +M ++    + +++++L++ +     
Sbjct: 386 MTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSR 445

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             E + ++++M +  +  ++  Y  +I  L++
Sbjct: 446 VSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIE 477



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/244 (18%), Positives = 97/244 (39%), Gaps = 3/244 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV-PQ 196
           PD  T +  L+ +       +A+ L++ M   G       YN +L         DK    
Sbjct: 253 PDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLL 312

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M  ++      DVV+YN  + A     D  +A K F E+ +  I PD ++++     ++ 
Sbjct: 313 MTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLG 372

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                 A   L +M +     + + Y++++      G  +    I+  M+      +   
Sbjct: 373 KGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVIS 432

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I+   K     +A ++Y+E ++     D     +++   I   ++ +A   + +++
Sbjct: 433 FNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMM 492

Query: 377 TKGI 380
            KG 
Sbjct: 493 DKGF 496


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 133/314 (42%), Gaps = 3/314 (0%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DTC  +L   ++ K         +++ ECG+      +N +++ +   G++ +   +   
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDA 161

Query: 201 LKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           + K    P VV++N  +       D +   +    +  + + PD  +YS L +   K   
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A     EM  R    N V +++L+ ++   G  D  + I+K+M+S     +   Y  
Sbjct: 222 VDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNT 281

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +I  L K G+ ++   + DE        D      L+        LE A  F  R++ + 
Sbjct: 282 LIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKES 341

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           I+     +  L  G  ++G+ +   + F++ +    K  PD+   T   N+  ++GD+  
Sbjct: 342 IRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK--PDNGTYTMIINEFCKKGDVRT 399

Query: 440 AEHLLVTLRNAGHV 453
           A  LL  ++  GHV
Sbjct: 400 ASRLLKEMQRDGHV 413



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 8/219 (3%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T S L++   +  K  EA  L  +M + G +   + +  +++++  NG +D   ++
Sbjct: 204 PDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEI 263

Query: 198 L-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
             Q L +  SPD++TYN  +     + D +       E+    + PD I+Y+TL     K
Sbjct: 264 YKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCK 323

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E A    K M K + R + VAY++L+S     G  D+  +++++M+S+  K ++  
Sbjct: 324 EGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGT 383

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           YT +I+   K G+   A  +  E +      D  VP ++
Sbjct: 384 YTMIINEFCKKGDVRTASRLLKEMQR-----DGHVPCVV 417



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 127/315 (40%), Gaps = 6/315 (1%)

Query: 76  RIVRELRKLKRYKHALEVC-EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           +++  L KLK +K   +   E +E  Y   L   +  +H     K   +  A++ F+ + 
Sbjct: 106 KVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHR--FCKEGEMRRAQSVFDAIT 163

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P   S   L++ Y++     E   L   M   G       Y+ ++N      ++D
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVD 223

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++  E L +   P+ VT+   +         ++A + + ++      PD I+Y+TL 
Sbjct: 224 EANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLI 283

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
               K    ++    + EM     + +++ Y++L+      G  +      K+M+    +
Sbjct: 284 YGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIR 343

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
           +++  YT ++S L + G  + AE ++ E  S+    D     +++  +  +  +  A   
Sbjct: 344 LDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRL 403

Query: 372 YNRLVTKGIKPCYTT 386
              +   G  PC  T
Sbjct: 404 LKEMQRDGHVPCVVT 418


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 158/396 (39%), Gaps = 41/396 (10%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           ++K +E+G   +    N I+  L K +    A++    M ++  I      Y+  L    
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM-VKEGIPPDVFTYSSILHGFC 126

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
            +  ++ A + F+ + ++   P+  T + L+    + +  +EA  + E M+E G      
Sbjct: 127 NLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVY 186

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++ Y S  Q+D+  ++   + +K  +P+V +YN+ +         + A+    E+
Sbjct: 187 TYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + PD  +YSTL   + ++  P++A   LKEM       N + YS +L      G+ 
Sbjct: 247 SHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHL 306

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           DE   + K M     + N   YT +I  +   G                           
Sbjct: 307 DEAFELLKAMQESKIEPNIFIYTILIEGMCTFG--------------------------- 339

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
                   +LE A   ++ L  KGI+P   T+ ++  G LK G   +  E F++   +V 
Sbjct: 340 --------KLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREM--AVN 389

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
             +P+              GD   A  L+  +   G
Sbjct: 390 GCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKG 425



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 1/226 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +L+   S  ++    ++  E+ K    PDV+TY+  +       +   A +   +++
Sbjct: 13  FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKME 72

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +    P+ ++Y+T+     K  L  +A     EM K     +   YSS+L  + N+G  +
Sbjct: 73  EKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVN 132

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E   ++K+M+      N   +T +I  L K     +A  +++         D    N L+
Sbjct: 133 EATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALV 192

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
             Y +R+Q++ A+  +N +  KG  P   ++ +L  G+ K G++++
Sbjct: 193 DGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 139/348 (39%), Gaps = 6/348 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F+ +      PD  T S +++   +   +  A  L++KM E G     + YN +++
Sbjct: 29  AVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIID 88

Query: 184 LYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
               +  + +      E+ K+   PDV TY+  L    +      A   F ++ +  + P
Sbjct: 89  SLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIP 148

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           + ++++ L     K  +  +A    + M ++    +   Y++L+  Y +    DE  +++
Sbjct: 149 NKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLF 208

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
             M       N   Y  +I+   K G  ++A+ +  E    S T D    + L+  +   
Sbjct: 209 NIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQV 268

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 422
            + + A+     + + G+ P   T+ ++  G  K G +++  E  K    S  K  P+  
Sbjct: 269 GRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQES--KIEPNIF 326

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           + T     +   G ++ A  L   L   G   T + Y  ++    K G
Sbjct: 327 IYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGG 374


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 3/284 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V LD + K   +  A   F ++       D  T + L+ S  + K+  EA  L ++M 
Sbjct: 87  YNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEME 146

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           E G       Y +++++Y   G+++    +L++ L KN +PD  T N  + A +     E
Sbjct: 147 ERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTE 206

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F  +KK+ +  + +S++ +     K      A   + EME R  + N + +++L+
Sbjct: 207 LACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLI 266

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +      Y  E  ++ ++M S     +   YTC+I +  K G   KA  ++ + E    +
Sbjct: 267 NCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCS 326

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +    N+L+ A +   + + A   Y  +  KGI P   T  +L
Sbjct: 327 ANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 135/320 (42%), Gaps = 19/320 (5%)

Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           N+ ++   LDK+      +K    PD + YN+ L      N  + A K F  +K      
Sbjct: 64  NVVLAMDFLDKM------IKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPA 117

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D  +Y+ L     + +  E+A     EME+R C  +  AY++++ +Y   G  +  + + 
Sbjct: 118 DDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVL 177

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-NILLAAYIN 361
           KKM+      +D     +I+++ + G  E A  I++  +  SG     V  N +L     
Sbjct: 178 KKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKK-SGVAVNTVSFNAMLDCCGK 236

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELL--TWGYLK-KGQMEKVLECFKKAIGSVRKWV 418
             ++ +A  F + +  +GIKP   T+  L    G  K   +  KVL+  + A        
Sbjct: 237 AGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSA-----GLT 291

Query: 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLII 475
           PD    T       + G++  A  +   +  AG  +  + YN L+    KAG+      I
Sbjct: 292 PDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351

Query: 476 VERMQKDNVQMDAETQKVLK 495
              M+K  +  DA T  VL+
Sbjct: 352 YFDMKKKGILPDAITATVLQ 371



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA + ++K  ++      Y LN ++  + +  R + A E+ E M+ +  + + +  +   
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK-KSGVAVNTVSFNAM 230

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           LD   K   +  A  F + +  +   P+  T + L++   + K ++EA  ++++M   G 
Sbjct: 231 LDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGL 290

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
                 Y  M+  +   G + K  +M  +++K   S +VVTYNL + A       + A  
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
            + ++KK  I PD I+ + L  L  K +L   +  +L E E+R
Sbjct: 351 IYFDMKKKGILPDAITATVLQQLAGKCKL---SGISLDENEQR 390


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 179/412 (43%), Gaps = 33/412 (8%)

Query: 82  RKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFFENLPDKMR 138
           RKL  Y  A+ +   ++       +S D   Y   +++  K +    A    + + D   
Sbjct: 216 RKLSDYSKAISIFSRLK----ASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAV 271

Query: 139 GPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY---NHMLNLYISNGQLDK 193
            PDT S   LL  YV N+K  EA +L  +M+E    KCPL     N M+++Y   GQL  
Sbjct: 272 QPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEA---KCPLDLTTCNIMIDVY---GQL-H 324

Query: 194 VPQMLQEL-----KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           +P+    L     K    P+VV+YN  L      +    A   F  ++   +  + ++Y+
Sbjct: 325 MPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYN 384

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           T+ ++Y K    EKA   ++EM+KR    N + YS+++S++   G  D    +++K+ S 
Sbjct: 385 TMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSS 444

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             ++++  Y  +I +  + G    A+ +  E +       PR   I + A   R + E  
Sbjct: 445 GVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI--PRDTAIGILARAGRIE-EAT 501

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428
             F      + +K   + +  +   + K  +   V+E F+K    V  + PD  +I    
Sbjct: 502 WVFRQAFDAREVKDI-SVFGCMINLFSKNKKYGNVVEVFEKM--RVVGYFPDSDVIALVL 558

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIVERM 479
           N   +  + D A+ L   +   G V   E++  +L  Y    +   ++VE +
Sbjct: 559 NAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLY--GARKDFVMVESL 608



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 153/337 (45%), Gaps = 22/337 (6%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + LL + ++ K+   A  L ++M + G       Y+ ++  +  +G  D     LQ++++
Sbjct: 139 NVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQ 198

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N S D+V Y+  +      +D   A   F  LK + I PD I+Y+++ +++ K +L  +
Sbjct: 199 DNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFRE 258

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-----Y 317
           A   L+EM     + + V+YS+LL++Y +     E L       SLF +MN+A+      
Sbjct: 259 ARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEAL-------SLFFEMNEAKCPLDLT 311

Query: 318 TC--VISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 373
           TC  +I    +L   ++A+ ++  W        P V   N LL  Y   +    A   + 
Sbjct: 312 TCNIMIDVYGQLHMPKEADRLF--WSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFR 369

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            + +K ++    T+  +   Y K  + EK     ++     R   P+    +   +  E+
Sbjct: 370 LMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEM--KKRGIEPNAITYSTIISIWEK 427

Query: 434 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            G +D A  L   LR++G  +   +Y +++  Y +AG
Sbjct: 428 AGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAG 464



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 133/321 (41%), Gaps = 42/321 (13%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SP +  YN+ L           A   F E+++  + PD  +YSTL + + K  L + +  
Sbjct: 132 SPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLF 191

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK---------------MMSLFA 310
            L++ME+     + V YS+L+ L   +    + + I+ +               M+++F 
Sbjct: 192 WLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFG 251

Query: 311 K-------------MND-------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           K             M D         Y+ +++  V   +F +A +++ E        D  
Sbjct: 252 KAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLT 311

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-K 409
             NI++  Y   +  + A+  +  +   GI+P   ++  L   Y +     + +  F+  
Sbjct: 312 TCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLM 371

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
               V++ V  +  +   Y K  E    + A +L+  ++  G     I Y++++  + KA
Sbjct: 372 QSKDVQQNVVTYNTMINIYGKTLEH---EKATNLIQEMKKRGIEPNAITYSTIISIWEKA 428

Query: 469 GKM--PLIIVERMQKDNVQMD 487
           GK+    I+ ++++   V++D
Sbjct: 429 GKLDRAAILFQKLRSSGVRID 449


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 167/393 (42%), Gaps = 12/393 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D   K   L  A   FE L  K   P  +T  AL+  + +  K    + L+ +M+
Sbjct: 243 YNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMN 302

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA-ACASQNDK 225
             G       +N +++     G +DK  +M++ + +    PD+ TYN+ +  +C+    K
Sbjct: 303 VMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIK 362

Query: 226 ETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
           E  E  FLE  K + + P+  SY+ L   Y K      A+  L ++ +   + + V+Y +
Sbjct: 363 EAEE--FLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGA 420

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
            +      G  D  L + +KMM      +   Y  ++S L K G F  A+ +  E   ++
Sbjct: 421 FIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLN 480

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D  +   L+  +I  N+L+ A   +  +++KGI P    + ++  G  K G+M   +
Sbjct: 481 LQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAV 540

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLR 463
               K    +    PD    +   +   +Q D+D A  +   +    +    + Y SL+ 
Sbjct: 541 SYVNKM--KIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLIN 598

Query: 464 TYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
            + K   M     +   MQ  N++ +  T  +L
Sbjct: 599 GFCKIADMSRAEKVFRAMQSFNLEPNVVTYTIL 631



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 16/289 (5%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEK 165
           GDY +  D++ KI     AE       DK   PD  S  A +H  V   +   A  + EK
Sbjct: 394 GDYVMASDMLFKI-----AET-----GDK---PDLVSYGAFIHGSVAGGEIDVALMVREK 440

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQND 224
           M E G       YN +++     G+      +L E L  N  PD   Y   +      N+
Sbjct: 441 MMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNE 500

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + A + F  +    IDP  + Y+ +     K      A + + +M+      +   +S+
Sbjct: 501 LDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHST 560

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++  Y      D  L+++ +MM    K N   YT +I+   K+ +  +AE ++   +S +
Sbjct: 561 VIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFN 620

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
              +     IL+  +    + E A SF+  ++     P  TT+  L  G
Sbjct: 621 LEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLING 669



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 123/315 (39%), Gaps = 23/315 (7%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           ++LL+  V+N K   A  L +KM E G        +H L+L + N  +  V + L ++ K
Sbjct: 168 NSLLNCLVKNGKVDVACELYDKMLERG-------GDHGLDLVVDNYSIVIVVKGLCDVGK 220

Query: 204 --------------NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
                            P+VV YN+ +     + D + A + F ELK     P   +Y  
Sbjct: 221 VEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGA 280

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L   + K    +     L EM       N   ++S++      G  D+   + + M  + 
Sbjct: 281 LIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMG 340

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
            + +   Y  +I+     G  ++AE   +  +  +   +      L+ AY  +    MA 
Sbjct: 341 CEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMAS 400

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
               ++   G KP   ++     G +  G+++  L   +K +   +   PD ++     +
Sbjct: 401 DMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMME--KGVFPDAQIYNVLMS 458

Query: 430 KLEEQGDIDGAEHLL 444
            L ++G    A+ LL
Sbjct: 459 GLCKKGRFPAAKLLL 473



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/428 (19%), Positives = 166/428 (38%), Gaps = 28/428 (6%)

Query: 81  LRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139
           + ++   +H L    W   L +   L +  Y+  L L+ K R  S  E   E++ ++   
Sbjct: 66  IDRIHNPQHGLYFFHWASTLPFSSPLNNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFK 125

Query: 140 P-----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
           P     ++   +   Y    K+ +   ++ ++  C    C +  N +LN  + NG++D  
Sbjct: 126 PTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNC--FPCVVANNSLLNCLVKNGKVDVA 183

Query: 195 PQM---LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID--------PD 243
            ++   + E   +   D+V  N  +        K   +   +E  +  ID        P+
Sbjct: 184 CELYDKMLERGGDHGLDLVVDNYSIVIVV----KGLCDVGKVEEGRKLIDDRWGNGCVPN 239

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            + Y+ +   Y K    ++A    +E++ +        Y +L+  +   G    V ++  
Sbjct: 240 VVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLN 299

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           +M  +   +N   +  +I +  K G  +KA  +      +    D    NIL+    +  
Sbjct: 300 EMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGG 359

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           +++ AE F  R   + + P   ++  L   Y K+G      +   K   +  K  PD   
Sbjct: 360 RIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDK--PDLVS 417

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPL--IIVERMQ 480
             A  +     G+ID A  +   +   G     +IYN L+    K G+ P   +++  M 
Sbjct: 418 YGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEML 477

Query: 481 KDNVQMDA 488
             N+Q DA
Sbjct: 478 DLNLQPDA 485


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 158/392 (40%), Gaps = 65/392 (16%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN---------------- 183
           P   ++L+H+Y ++   A A  L++KM +CG     + YN ++                 
Sbjct: 112 PRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLA 171

Query: 184 ----------------LYISN--------GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA 218
                           + ISN        G+ +K   +++E+  K   PD  TY+  +  
Sbjct: 172 EKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGY 231

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
             + +  E A + F E+K+  I PD   Y+TL   + K    E+A     EME+  C  N
Sbjct: 232 LCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPN 291

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
            V Y++L+  Y       +   +++ M+S     N   YT +I  L K G+ EKA  IY 
Sbjct: 292 VVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351

Query: 339 --------------EWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKG 379
                          +  + G  +   PN+     L+       Q++ A      +  +G
Sbjct: 352 IMKKENVEIPDVDMHFRVVDGASNE--PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG 409

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
            +P +  ++ L  G  K G++++  E F   +     + P+    ++  ++L +   +D 
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLEC--GYDPNVYTYSSLIDRLFKDKRLDL 467

Query: 440 AEHLLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
           A  +L   L N+   +  IY  ++    K GK
Sbjct: 468 ALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 499



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 103/227 (45%), Gaps = 7/227 (3%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           AL+    +  K  EA+ +   M ECG+      Y+ +++    + +LD   ++L ++ +N
Sbjct: 419 ALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLEN 478

Query: 205 T-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
           + +P+VV Y   +         + A K  + +++   +P+ ++Y+ +   + K    EK 
Sbjct: 479 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKC 538

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              L++M  + C  N V Y  L++   + G  DE  ++ ++M   +   + A Y  VI  
Sbjct: 539 LELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEG 598

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMA 368
             +    E   ++Y  +E       P  P   +L+  +I   +LE+A
Sbjct: 599 FNR----EFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIA 641



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/390 (19%), Positives = 151/390 (38%), Gaps = 35/390 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K   +  A N+F+ +      P+  T +AL+H+Y++++K ++A  + E M 
Sbjct: 260 YTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMML 319

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK------------------NTSPDV 209
             G     + Y  +++     G+++K  Q+ + +KK                  +  P+V
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV 379

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
            TY   +         + A      +     +P+ + Y  L     K    ++A      
Sbjct: 380 FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +     N   YSSL+         D  L++  KM+      N   YT +I  L K+G+
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 499

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++A  +    E      +      ++  +    ++E       ++ +KG  P + T+ +
Sbjct: 500 TDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRV 559

Query: 390 LTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           L       G ++   K+LE  K+       + P H    A Y K+ E  + +    L ++
Sbjct: 560 LINHCCSTGLLDEAHKLLEEMKQT------YWPRH---VAGYRKVIEGFNREFIASLYLS 610

Query: 447 L---RNAGHVSTEIYNSLLRTYAKAGKMPL 473
                N       +Y  L+  + KAG++ +
Sbjct: 611 FEISENDSVPVAPVYRVLIDNFIKAGRLEI 640


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 188/432 (43%), Gaps = 25/432 (5%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           + ++  M+K ++ G+       N ++    K  R+K A+E+ + M L    K V+ D   
Sbjct: 210 KKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNL----KGVNADVCT 265

Query: 113 HLDLISKI-RGLSSAENFF--ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           +  LI  + R   SA+ +    ++  +M  P+  T + LL+ +    K   A  L+ +M 
Sbjct: 266 YNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEML 325

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G     + +N +++ +IS G   +  +M   ++ K      V+Y + L       + +
Sbjct: 326 TFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFD 385

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   ++ +K+  +    I+Y+ +     K    ++A   L EM K     + V YS+L+
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALI 445

Query: 287 SLYTNMG----YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           + +  +G     K+ V RI++  +S     N   Y+ +I +  ++G  ++   IY+    
Sbjct: 446 NGFCRVGRLKTAKEIVCRIYRVGLS----PNGIIYSTLIYNCCRMGCLKETIRIYEAMIL 501

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              T D    N+L+ +     ++  AE F   + + GI P   +++ L  GY   G+  K
Sbjct: 502 EGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLK 561

Query: 403 VLECFKKA--IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYN 459
               F +   +G    +     L+      L + G +  AE  L +L+N    V T + N
Sbjct: 562 AFSVFDEMTKVGHHPTFFTYGSLLKG----LCKGGHLIAAEKFLKSLQNVPAAVDTVMCN 617

Query: 460 SLLRTYAKAGKM 471
           +L+    K+G +
Sbjct: 618 TLITAMCKSGNL 629



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 24/299 (8%)

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
           N PD      T + L+ S  +  K AEAE  M  M+  G L   + ++ ++N Y S+G+ 
Sbjct: 504 NTPDHF----TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEG 559

Query: 192 DKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            K   +  E+ K    P   TY   L           AEK    L+      D +  +TL
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTL 619

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            +   K    +KA +   EM +R+   +   Y+SL+S     G    V+ I      LFA
Sbjct: 620 ITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKG--KTVIAI------LFA 671

Query: 311 KMNDAE---------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
           K  +A          YTC +  + K G+++       + + +  T D    N ++  Y  
Sbjct: 672 KEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSR 731

Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
             ++E        +  +   P  TT+ +L  GY K+  +      ++  I  +   +PD
Sbjct: 732 MGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMI--LSGILPD 788



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 42/406 (10%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P     L+  Y++     ++  +   M   GF       N +L   + + +   V   L+
Sbjct: 123 PSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLK 182

Query: 200 E-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-- 256
           E LK+   PDV T+N+ +    ++   + +     +++K+   P  ++Y+T+   Y K  
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 257 -----MELPE----------------------------KAATTLKEMEKRTCRKNRVAYS 283
                +EL +                            K    L++M KR    N V Y+
Sbjct: 243 RFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYN 302

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +LL+ ++N G      ++  +M++     N   +  +I   +  G F++A  ++   E+ 
Sbjct: 303 TLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAK 362

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
              G      +LL       + ++A  FY R+   G+     T+  +  G  K G +++ 
Sbjct: 363 GLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA 422

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
           +    +   S     PD    +A  N     G +  A+ ++  +   G   +  IY++L+
Sbjct: 423 VVMLNEM--SKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLI 480

Query: 463 RTYAKAG--KMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVS 506
               + G  K  + I E M  +    D  T  VL +TS     +V+
Sbjct: 481 YNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVL-VTSLCKAGKVA 525



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 15/337 (4%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T SAL++ + +  +   A+ ++ ++   G     + Y+ ++      G L +  ++
Sbjct: 436 PDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRI 495

Query: 198 LQE--LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
            +   L+ NT PD  T+N+ + +         AE+    +    I P+ +S+  L + Y 
Sbjct: 496 YEAMILEGNT-PDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYG 554

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
                 KA +   EM K         Y SLL      G+     +  K + ++ A ++  
Sbjct: 555 SSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTV 614

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
               +I+++ K G  +KA +++ E    S   D      L++    + +  +A  F    
Sbjct: 615 MCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEA 674

Query: 376 VTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKA---IGSVRKWVPDHRLITAAYNKL 431
             +G + P    +     G  K GQ +     F++    +G  R  V  + +I   Y+++
Sbjct: 675 EARGNLVPNKVMYTCFVDGMFKAGQWKAGFY-FRQQMDKLGLTRDVVTTNAMID-GYSRM 732

Query: 432 EEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAK 467
              G I+    LL  + N     +   YN LL  Y+K
Sbjct: 733 ---GKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSK 766


>gi|297837243|ref|XP_002886503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332344|gb|EFH62762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 408

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 165/376 (43%), Gaps = 42/376 (11%)

Query: 91  LEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150
           LE+C    L  D          H+D I+     S+A    ENL +K +     S LL  +
Sbjct: 64  LEICRAASLTPD---------CHIDRIA----FSAA---VENLAEK-KHFSAVSNLLDGF 106

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210
           ++N++  ++E                   H + LY     LD   ++ ++L+K   P  V
Sbjct: 107 IENRQDLKSERFAA---------------HAIVLYAQANMLDHSLRVFRDLEKFEIPRTV 151

Query: 211 -TYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLK 268
            + N  L AC    D + A++ ++E+ K   I+PD  +Y+ +  ++ +      + + + 
Sbjct: 152 KSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVA 211

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EME++  + N  ++  ++S + +    DEV ++   M      +  + Y   I SL K  
Sbjct: 212 EMERKGIKPNSSSFGLMISGFYSEDKNDEVGKVLVMMKDRGVNIGVSTYNIRIQSLCKRK 271

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP---CYT 385
           + ++A+ + D   S     +    + L+  + N +  E A+  +  +V +G KP   CY 
Sbjct: 272 KSKEAKALLDGMLSAGMKPNTVTYSHLIRGFCNEDDFEEAKKLFKVMVNRGCKPDSECYF 331

Query: 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 445
           T   L +   K G  E  L   K+++   + WVP   ++ +  N L +   +D A+ L+ 
Sbjct: 332 T---LIYYLCKGGDFETALVLCKESME--KNWVPSFSIMKSLVNGLAKDSKVDEAKELIG 386

Query: 446 TLRNAGHVSTEIYNSL 461
            ++     + E++N +
Sbjct: 387 QVKEKFTRNVELWNEV 402


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 11/346 (3%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL------SS 125
           YE N IV     L  Y H+  + E + L  D   V+G     +   + I GL      S 
Sbjct: 147 YEPN-IVTLSSLLNGYCHSKRISEAVAL-VDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 204

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A    + +  K   PD  T   +++   +   +  A  L+ KM +       L YN +++
Sbjct: 205 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264

Query: 184 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
                  +D    + +E++ K   P+VVTY+  ++   +      A +   ++ + KI+P
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
           D  ++S L   ++K     +A     EM KR+   + V YSSL++ +      DE  +++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 303 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362
           + M+S     +   Y  +I    K    E+   ++ E       G+    NIL+      
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444

Query: 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
              +MA+  +  +V+ G+ P   T+  L  G  K G++EK +  F+
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 490



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           + ++    + K   +A  L ++M   G     + Y+ +++   + G+     ++L ++ +
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PDV T++  + A   +     AEK + E+ K  IDP  ++YS+L + +   +  ++
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M  + C  + V Y++L+  +      +E + ++++M       N   Y  +I 
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L + G+ + A+ I+ E  S     +    N LL       +LE A   +  L    ++P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+ ++  G  K G++E   + F     S++   PD        +    +G  + A+ 
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADA 557

Query: 443 LLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           L   ++  G + ++  YN+L+R   + G
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDG 585



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 151/360 (41%), Gaps = 47/360 (13%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H    + K++EA AL+++M   G     + Y  ++N     G  D    +L ++
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++    P V+ YN  +         + A   F E++   I P+ ++YS+L S        
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A+  L +M +R    +   +S+L                                   
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSAL----------------------------------- 332

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTK 378
           I + VK G+  +AE +YDE   +  + DP +     L+  +   ++L+ A+  +  +V+K
Sbjct: 333 IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
              P   T+  L  G+ K  ++E+ +E F++   S R  V +          L + GD D
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREM--SQRGLVGNTVTYNILIQGLFQAGDCD 448

Query: 439 GAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            A+ +   + + G V   I  YN+LL    K GK+   +++ E +Q+  ++    T  ++
Sbjct: 449 MAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 145/370 (39%), Gaps = 78/370 (21%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N I+  L K K    AL + + ME +  I+     Y+  +  +      S A     ++ 
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           ++   PD  T SAL+ ++V+  K  EAE L ++M +       + Y+ ++N +  + +LD
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 193 KVPQMLQEL-KKNTSPDVVTYN-----------------------------------LWL 216
           +  QM + +  K+  PDVVTYN                                   + +
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK---- 272
                  D + A++ F E+    + P+ ++Y+TL     K    EKA    + +++    
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498

Query: 273 -------------------------------RTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
                                          +  + + VAY++++S +   G K+E   +
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558

Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----VPNILLA 357
           +K+M       N   Y  +I + ++ G+ E +  +  E  S    GD      V N+L  
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618

Query: 358 AYINRNQLEM 367
             ++++ L+M
Sbjct: 619 GRLDKSFLDM 628



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 1/225 (0%)

Query: 186 ISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           +S  +LD    +  E+ K+   P ++ ++  L+A A  N  +       +++   I  + 
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
            +YS L + + +      A   L +M K     N V  SSLL+ Y +     E + +  +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M     + N   +  +I  L    +  +A  + D   +     D     +++     R  
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            ++A +  N++    ++P    +  +  G  K   M+  L  FK+
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 140/308 (45%), Gaps = 11/308 (3%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAAC 219
           L   M   G L   + YN +++      +LD+   +L+E+  + + SPDV+TY   ++  
Sbjct: 220 LFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGF 279

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 E A   F E+ ++ I+P  ++++ L   + K+     A    ++M   +C  + 
Sbjct: 280 RKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDV 339

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V ++SL+  Y   G     L++W  M +     N   Y+ +I++L K     +A ++  +
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ 399

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            +       P + N ++  +     ++ A      +  K  +P   T+ +L  G+  KG+
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGR 459

Query: 400 MEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           M + L+ FKK  AIG      PD+  I++    L + G    A H++ T     ++S   
Sbjct: 460 MVEALDIFKKMLAIGC----APDNITISSLVACLLKAGKPSEAFHIVQTASEDLNLS--- 512

Query: 458 YNSLLRTY 465
           ++SL +T+
Sbjct: 513 FSSLRKTF 520



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 138/330 (41%), Gaps = 46/330 (13%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN++LN  +  G++ +   + +E L  ++ P+  T+N+ +       + E   + F  ++
Sbjct: 166 YNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQ 225

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYK 295
                PD ++Y+TL S   K    ++A   LKE++ R  C  + + Y+S++S     G++
Sbjct: 226 SFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIIS-----GFR 280

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--N 353
                                         KLG+ E A  +++E   I    +P V   N
Sbjct: 281 ------------------------------KLGKLEAASVLFEEM--IRSGIEPTVVTFN 308

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           +L+  +     +  AE+ + ++ +    P   T+  L  GY + G +   L+ +   +  
Sbjct: 309 VLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWD--VMK 366

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM- 471
            R   P+    +   N L +   I  A  LL  L+ +       IYN ++  + KAG + 
Sbjct: 367 ARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVD 426

Query: 472 -PLIIVERMQKDNVQMDAETQKVLKITSEM 500
              +IV  M++   + D  T  +L I   M
Sbjct: 427 EANVIVTEMEEKRCRPDKVTFTILIIGHCM 456



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 102/231 (44%), Gaps = 8/231 (3%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           E++    R +   Y+ LL+     G   E + ++K+ ++  +  N   +  +I  L ++G
Sbjct: 153 EVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVG 212

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYTTW 387
           E EK   +++  +S     D    N L++     N+L+ A      + ++    P   T+
Sbjct: 213 EVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTY 272

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGS-VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
             +  G+ K G++E     F++ I S +   V    ++   + K+   G++  AE +   
Sbjct: 273 TSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKI---GNMVAAEAMHEK 329

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL 494
           + +   +   + + SL+  Y + G  ++ L + + M+  NV  +  T  V+
Sbjct: 330 MASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVI 380


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 179/400 (44%), Gaps = 16/400 (4%)

Query: 21  AKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM-RKWKEEGHTVHKYELNRIVR 79
           AKI  LGL  +        TL R L   V  K   A+ +  K   EG   +      ++ 
Sbjct: 126 AKILKLGLQPD---TATFTTLIRGLC--VEGKIGDALHLFDKMIGEGFQPNVVTYGTLIN 180

Query: 80  ELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
            L K+     A+ +   ME    Q D+ +    Y   +D + K R ++ A N F  +  +
Sbjct: 181 GLCKVGNTNAAIRLLRSMEQGNCQPDVVV----YTSIIDSLCKDRQVTEAFNLFSKMVGQ 236

Query: 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
              PD  T ++L+HS     +      L+ +M     +   + ++ +++     G++ + 
Sbjct: 237 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 296

Query: 195 PQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
             ++  +  +   P+VVTYN  +     Q++ + A K F  +      P+ ISY+TL + 
Sbjct: 297 HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLING 356

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           Y K++  +KA    +EM ++    N V Y++L+    ++G   + + ++ +M++     +
Sbjct: 357 YCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPD 416

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
            A Y  ++  L K    ++A  +    E  +   D ++  I++       +LE A   ++
Sbjct: 417 LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFS 476

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L +KG++P   T+ ++  G  ++G +++  + F +  G+
Sbjct: 477 NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 516



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 116/275 (42%), Gaps = 9/275 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           LK    PD  T+   +     +     A   F ++      P+ ++Y TL +   K+   
Sbjct: 129 LKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNT 188

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L+ ME+  C+ + V Y+S++          E   ++ KM+      +   YT +
Sbjct: 189 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 248

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I SL  L E++    + ++  +     D  + + ++ A     ++  A    + ++ +G+
Sbjct: 249 IHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGV 308

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDI 437
           +P   T+  L  G+  + +M++ ++ F   + +   + P+   +  +   Y K++    +
Sbjct: 309 EPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN--GYAPNVISYNTLINGYCKIQR---M 363

Query: 438 DGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
           D A +L   +     + +T  YN+L+      G++
Sbjct: 364 DKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 138/358 (38%), Gaps = 45/358 (12%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHLDLI 117
           K   +G +   +    ++  L  L  +KH   +   M   ++  D+ +    ++  +D +
Sbjct: 232 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI----FSTVVDAL 287

Query: 118 SKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            K   ++ A +  + +  +   P+  T +AL+  +    +  EA  + + M   G+    
Sbjct: 288 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 347

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + YN ++N Y    ++DK   + +E+ +K   P+ VTYN  +         + A   F E
Sbjct: 348 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHE 407

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +      PD  +Y  L     K    ++A   LK +E                  +NM  
Sbjct: 408 MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG-----------------SNM-- 448

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D  ++I               YT VI  + + GE E A +I+    S     + R   I
Sbjct: 449 -DPDIQI---------------YTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTI 492

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           ++     R  L+ A   +  +   G  P   T+  +T G L+  +  + ++  ++ + 
Sbjct: 493 MINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLA 550



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 111/273 (40%), Gaps = 5/273 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L  +  P  V +N  L + A      T      ++    I PD  + + L + +  +  P
Sbjct: 59  LHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRP 118

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A + L ++ K   + +   +++L+      G   + L ++ KM+    + N   Y  +
Sbjct: 119 GFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTL 178

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+ L K+G    A  +    E  +   D  V   ++ +     Q+  A + ++++V +GI
Sbjct: 179 INGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGI 238

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L        + + V     + I S  K +PD  + +   + L ++G I  A
Sbjct: 239 SPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINS--KIMPDVVIFSTVVDALCKEGKITEA 296

Query: 441 EHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            H +V +     V   +  YN+L+  +    +M
Sbjct: 297 -HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 328


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 168/412 (40%), Gaps = 50/412 (12%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L  A +F  +  +K+ GP   S   ++  + +      A +    M + G L     YN 
Sbjct: 253 LEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNI 311

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L+     G +D+      +++K+   PDVVTYN              A K   ++    
Sbjct: 312 LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQG 371

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           ++PD ++Y+TL   + +M   E+A    +E   R  + N + Y+ LLS    +G  +E L
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEAL 431

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVK------------------------------LGE 329
            ++ +M +L  + +   Y+ +I  L K                              LG 
Sbjct: 432 TLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGL 491

Query: 330 FE-----KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
           F+     +A N +D W  +    D  + NI++  Y+  + +  A   Y +++ +GI P  
Sbjct: 492 FKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSV 551

Query: 385 TTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
            T+  L  G+ ++G +    K+LE  +     ++  VP     T   N   E G++    
Sbjct: 552 VTFNTLINGFCRRGDLMEARKMLEVIR-----LKGLVPSVVTYTTLMNAYCEVGNMQEMF 606

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           H L  +     V T + Y  L++   +  KM   L ++E M    +  D+ T
Sbjct: 607 HFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVT 658



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 155/369 (42%), Gaps = 44/369 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQ 199
           T S L+H   +  K  +A + +   ++   +  P  +  N +++ +   G +D       
Sbjct: 239 TTSILIHGLCEQSKLEDAISFLHDSNK---VVGPSIVSINTIMSKFCKVGLIDVARSXFC 295

Query: 200 ELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            + KN    D  +YN+ L         + A     +++K  ++PD ++Y+TL   ++ + 
Sbjct: 296 LMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLG 355

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
           L   A   +++M  +    + V Y++L+  +  MG  +E L++ ++ +S   K+N   Y 
Sbjct: 356 LMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYN 415

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA----------AYINRNQLEMA 368
            ++S L K+G  E+A  ++DE E++    D  V +IL+           AY    Q+ + 
Sbjct: 416 MLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLK 475

Query: 369 ESFYNRLVTKGI-------------KPCYTTW------------ELLTWGYLKKGQMEKV 403
             F +    + +             +  + TW             ++  GY++   + + 
Sbjct: 476 RKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEA 535

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
           ++ + K I   R   P         N    +GD+  A  +L  +R  G V + + Y +L+
Sbjct: 536 MQLYYKMIE--RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593

Query: 463 RTYAKAGKM 471
             Y + G M
Sbjct: 594 NAYCEVGNM 602



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/408 (20%), Positives = 172/408 (42%), Gaps = 23/408 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131
           N ++  L K+ R + AL + + ME   L+ D  +    Y++ +  + K   +  A   +E
Sbjct: 415 NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIV----YSILIHGLCKEGFVQRAYQLYE 470

Query: 132 NLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
            +  K + P   +  A+L    +N   +EA    +  +    ++  + YN M++ Y+   
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYV--- 527

Query: 190 QLDKVPQMLQ----ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
           +LD + + +Q     +++  +P VVT+N  +     + D   A K    ++   + P  +
Sbjct: 528 RLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVV 587

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+TL + Y ++   ++    L EME        V Y+ L+          E L++ + M
Sbjct: 588 TYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYM 647

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNILLAAYINRN 363
            +     +   Y  +I    K  E  KA  +Y+    +    DP      +L+ A     
Sbjct: 648 YAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMM--LLHNCDPTQVTYKVLINALCIFG 705

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
            L+  +     +  + I     T+  +   +  KGQ+ K L  F + +   + +V   R 
Sbjct: 706 DLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLA--KGFVISIRD 763

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK 470
            +A  N+L ++G I  A++  V + + G     EI  ++L  + + G 
Sbjct: 764 YSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGN 811


>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Brachypodium distachyon]
          Length = 737

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-N 204
           ++++Y +  +  EAE L  +M E G     + YN +++ Y    Q + V  +L E+    
Sbjct: 395 IVNAYCKCSQIEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLG 454

Query: 205 TSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             P+  +YN  ++A   Q    E AE AFL +K   I P   SY++L   Y      EKA
Sbjct: 455 LQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKA 514

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
             T  +M+K   + +   Y++LL ++   G  D+++  W+ M++         +  V+  
Sbjct: 515 HITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTRVTFHMVLDG 574

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
           L K G + +A ++  E+ +I         NIL+  Y    Q          +    +KP 
Sbjct: 575 LAKYGLYVQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLPQLLKEMSALELKPD 634

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
             T+  + + Y +     K     K+ + S +  VPD +    +Y KL    D+  A
Sbjct: 635 SVTYSTMIYAYARVRDFSKAFYYHKQMVRSGQ--VPDAK----SYKKLLNTLDVKSA 685



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 139/332 (41%), Gaps = 22/332 (6%)

Query: 158 EAEALMEKMSECGF-LKC-------------PLPYNHMLNLYI--SNGQLDKVPQMLQEL 201
           E   LM++M E G  L+C             P P   ++ L +       D+V ++L  L
Sbjct: 215 ECVELMKRMGEEGLPLRCLDLFRWMRVLEEQPTPQAWLVALVVLGRARMADEVLEILGRL 274

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                  + V YN  ++  A     + A   F  ++K  + PD I+ S + ++  K ++ 
Sbjct: 275 PHERQFREAVLYNAAMSGVAYCGRYDDAWTIFEFMEKNSVQPDHITSSIMLNVMKKQKVS 334

Query: 261 EKAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            KAA    + M ++  + +    +SL+ ++ + G K E L I  +M       N + Y  
Sbjct: 335 AKAAWEFFQRMNRKGVKWSLDVSASLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNE 394

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++++  K  + E+AE ++ E +           NIL+ AY  R Q E+ ES    +   G
Sbjct: 395 IVNAYCKCSQIEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLG 454

Query: 380 IKPCYTTWELLTWGYLKKGQM-EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           ++P   ++  L   Y ++ +M EK  + F +      K  P     T+        G  +
Sbjct: 455 LQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGIK--PTSSSYTSLLCAYAVNGQYE 512

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            A    V ++      S E Y +LL  + +AG
Sbjct: 513 KAHITYVDMKKERLKPSLETYTALLDIFRRAG 544



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 148/365 (40%), Gaps = 54/365 (14%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAE-ALMEKMSECGFLKCPLPYNHML 182
           A   FE +      PD  T S +L+   + K SA+A     ++M+  G +K  L  +  L
Sbjct: 302 AWTIFEFMEKNSVQPDHITSSIMLNVMKKQKVSAKAAWEFFQRMNRKG-VKWSLDVSASL 360

Query: 183 NLYISNGQLDKVPQMLQ-ELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
                +  L K   ++Q E+++   P +   YN  + A    +  E AE  F+E+K+  +
Sbjct: 361 IKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNEIVNAYCKCSQIEEAEGLFVEMKEKGL 420

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P  ++Y+ L   Y +   PE   + L EM     + N  +Y+ L+S Y           
Sbjct: 421 KPTIVTYNILMDAYSRRLQPEVVESLLLEMHDLGLQPNARSYNCLISAYGR--------- 471

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
             +K MS                       EKAE+ +   ++            LL AY 
Sbjct: 472 --QKKMS-----------------------EKAEDAFLRMKADGIKPTSSSYTSLLCAYA 506

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRK 416
              Q E A   Y  +  + +KP   T+  L   + + G  +K++E ++  I    G  R 
Sbjct: 507 VNGQYEKAHITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTR- 565

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG---KMP 472
            V  H ++    + L + G    A  ++    N G   T + YN L+ TYAK G   K+P
Sbjct: 566 -VTFHMVL----DGLAKYGLYVQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLP 620

Query: 473 LIIVE 477
            ++ E
Sbjct: 621 QLLKE 625


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 162/361 (44%), Gaps = 10/361 (2%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P T  A++ +   + ++ EAEAL E++ E G       YN +L  Y+  G L     ++ 
Sbjct: 292 PSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVS 351

Query: 200 ELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E++K    PD  TY+L + A A     E+A     E++ + ++P+   YS + + Y    
Sbjct: 352 EMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKG 411

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             +K+   LK+M+    + +R  Y+ ++  +      D  +  +++M+S   + +   + 
Sbjct: 412 EWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWN 471

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I+   K G    AE ++ E +    +      NI++ +   + + E    F +++ ++
Sbjct: 472 TLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQ 531

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           G+ P   T+  L   Y K G+    +EC +  K+ G    + P   +  A  N   ++G 
Sbjct: 532 GLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTG----FKPTSTMYNALINAYAQRGL 587

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA--KAGKMPLIIVERMQKDNVQMDAETQKV 493
            + A +    +   G   + +  NSL+  +   +       +++ M+++N++ D  T   
Sbjct: 588 SELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTT 647

Query: 494 L 494
           L
Sbjct: 648 L 648



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 10/311 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME---LQYDIKLVSGDY 110
           SA I +++ +      + Y  +RI+   R    ++ + +V + M+   +Q D       Y
Sbjct: 380 SARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHF----Y 435

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSE 168
            V +D   K   L  A   FE +  +   PDT +   L++ + ++ +   AE L  +M +
Sbjct: 436 NVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQ 495

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKET 227
            G+  C   YN M+N      + ++V   L +++ +   P+ +TY   +           
Sbjct: 496 RGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSD 555

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A +    LK T   P    Y+ L + Y +  L E A    + M       + +A +SL++
Sbjct: 556 AIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 615

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            +       E   + + M     + +   YT ++ +L+++ +F+K   +Y+E  +   T 
Sbjct: 616 AFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTP 675

Query: 348 DPRVPNILLAA 358
           D +   +L +A
Sbjct: 676 DRKARAMLRSA 686



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 118/293 (40%), Gaps = 13/293 (4%)

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI---KMELP--EKAA 264
           +TYN  + ACA   D E A     ++++    PD+++YS++        K++ P  +K  
Sbjct: 186 LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLY 245

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
           T   E+E      +    + ++  ++  G     +R      S       +    VI +L
Sbjct: 246 T---EIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILAL 302

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G   +AE +++E          R  N LL  Y+    L+ AE   + +   G+KP  
Sbjct: 303 GNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDE 362

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+ LL   Y   G+ E      K+   S  +  P+  + +       ++G+   +  +L
Sbjct: 363 QTYSLLIDAYAHAGRWESARIVLKEMEASNVE--PNSYVYSRILASYRDKGEWQKSFQVL 420

Query: 445 VTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             +++ G       YN ++ T+ K   +   +   ERM  + ++ D  T   L
Sbjct: 421 KDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTL 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/300 (18%), Positives = 119/300 (39%), Gaps = 6/300 (2%)

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQN--DKETAEKA 231
           PL YN ++     NG ++K   ++ +++++   PD V Y+  +      N  D    +K 
Sbjct: 185 PLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKL 244

Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
           + E++  KI+ D    + +   + K   P +A   L   +            +++    N
Sbjct: 245 YTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGN 304

Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
            G   E   +++++    ++     Y  ++   VK G  + AE +  E E      D + 
Sbjct: 305 SGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQT 364

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            ++L+ AY +  + E A      +    ++P    +  +   Y  KG+ +K  +  K   
Sbjct: 365 YSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMK 424

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
            +  +  PD        +   +   +D A      + + G    T  +N+L+  + K+G+
Sbjct: 425 SNGVQ--PDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGR 482


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 24/344 (6%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L+ +  + ++S++A  L+E+M E G     + +N ++      GQL++    
Sbjct: 348 PDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGR 407

Query: 198 LQEL-KKNTSPDVVTYNLWL-AACASQNDKETAEKAFL---ELKKTKIDPDWISYSTLTS 252
           L+ + ++  +PDV+TYN  + A+C + N      KAF+   E+ ++ +  D  + +TL  
Sbjct: 408 LEMMTEEGLTPDVITYNTLIDASCKAGN----VAKAFVLMDEMVRSGLKMDTFTLNTLLY 463

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K +  E+A   L+   +R    + V+Y ++++ Y      +  L +W +M+      
Sbjct: 464 NLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTP 523

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           + + Y  +I  L  +G+  +A +  +E   +    D    NI++ AY     LE A  F+
Sbjct: 524 SISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFH 583

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-AYNKL 431
           N++V    KP   T   L  G    G++EK ++ F+        WV   + +    YN L
Sbjct: 584 NKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFE-------SWVEKGKKVDVITYNTL 636

Query: 432 EE----QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
            +      D+D A      +   G       YN LL   ++AG+
Sbjct: 637 IQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGR 680



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P+  T+NL +    S+     A     +++   + PD ++Y+TL + + +  +  +A T 
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L  M+K      R  Y++L+S Y  +G+  +   + + M +   + +   Y  + + L +
Sbjct: 267 LARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQ 326

Query: 327 LGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            G+ ++A  + DE E + G   P V   N L+ A     +   A +    +  KG+K   
Sbjct: 327 AGKVDEAFKLKDEMEQL-GIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSL 385

Query: 385 TTWELLTWGYLKKGQMEKVL 404
            T  ++  G  ++GQ+E+ L
Sbjct: 386 VTHNIIVKGLCREGQLEEAL 405



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 115/293 (39%), Gaps = 5/293 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +++ + S G L      L +++    SPD VTYN  L A   +     A      +K
Sbjct: 212 FNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMK 271

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  I P   +Y+TL S Y ++   ++A   ++ M       +   Y+ L +     G  D
Sbjct: 272 KEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVD 331

Query: 297 EVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           E  ++  +M  L     D   Y  ++ +  K      A N+ +E             NI+
Sbjct: 332 EAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNII 391

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       QLE A      +  +G+ P   T+  L     K G + K      + + S  
Sbjct: 392 VKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGL 451

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
           K +    L T  YN  +E+   + AE LL      G V  E+ Y +++  Y K
Sbjct: 452 K-MDTFTLNTLLYNLCKEK-RYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFK 502



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 133/368 (36%), Gaps = 40/368 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H++      A+A + + KM   G     + YN +LN +   G L +   +L  +
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270

Query: 202 KK----------NT--------------------------SPDVVTYNLWLAACASQNDK 225
           KK          NT                           PD+ TYN+  A        
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330

Query: 226 ETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
           + A K   E+++  I  PD ++Y+TL     K +    A   L+EM ++  + + V ++ 
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           ++      G  +E L   + M       +   Y  +I +  K G   KA  + DE     
Sbjct: 391 IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSG 450

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N LL       + E AE        +G  P   ++  +   Y K+ + E  L
Sbjct: 451 LKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPAL 510

Query: 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLR 463
             + + I   RK  P           L   G +  A   L  L   G V  +  YN ++ 
Sbjct: 511 CLWDEMIK--RKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIH 568

Query: 464 TYAKAGKM 471
            Y K G +
Sbjct: 569 AYCKEGDL 576



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 84  LKRYKHALEVCEWMEL-QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD- 141
            K YK    +C W E+ +  +      Y   +  +S +  L+ A +    L +    PD 
Sbjct: 501 FKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDD 560

Query: 142 -TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            T + ++H+Y +     +A     KM E  F    +  N ++N     G+L+K  ++ + 
Sbjct: 561 TTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFES 620

Query: 201 -LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
            ++K    DV+TYN  + A    ND +TA + F +++   + PD  +Y+ L S
Sbjct: 621 WVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLS 673



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 12/308 (3%)

Query: 196 QMLQELKKN--TSPDVVTYNLWLAACA--SQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           Q+L   ++     P +   N  L+A A       + +  AF  L   ++ P+  +++ L 
Sbjct: 157 QLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLV 216

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +        A +TL +M+      + V Y++LL+ +   G   E   +  +M      
Sbjct: 217 HTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIV 276

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
              A Y  ++S+  +LG  ++A ++ +   +     D    N+L A      +++ A   
Sbjct: 277 PTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKL 336

Query: 372 YNRLVTKGI-KPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSVRKWVPDHRLITAAYN 429
            + +   GI  P   T+  L     K  +    L   ++     V+  +  H +I     
Sbjct: 337 KDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKG-- 394

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQM 486
            L  +G ++ A   L  +   G     I YN+L+    KAG +    ++++ M +  ++M
Sbjct: 395 -LCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKM 453

Query: 487 DAETQKVL 494
           D  T   L
Sbjct: 454 DTFTLNTL 461



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 15/253 (5%)

Query: 252 SLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLY--TNMGYKDEVLRIWKKMMSL 308
           S Y ++ LP  AA  L    +R C R +  A +++LS    +        L  +  +++L
Sbjct: 144 STYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIAL 203

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   +  ++ +    G    A +   + +    + D    N LL A+  +  L  A
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 263

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDHRLIT 425
            +   R+  +GI P   T+  L   Y + G   Q   V+E    A G    + PD     
Sbjct: 264 RTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAM-TAFG----FEPDLWTYN 318

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM--PLIIVERMQK 481
                L + G +D A  L   +   G VS ++  YN+L+    K  +    L ++E M++
Sbjct: 319 VLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMRE 378

Query: 482 DNVQMDAETQKVL 494
             V+    T  ++
Sbjct: 379 KGVKSSLVTHNII 391


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQM 197
           TC+ ++ ++ +  +  EA  LM +M   G       YN ++N       S   L+  P M
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLM 561

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L   K+N  P VV Y+  +   A Q++ + A   +  + K  + PD ++Y+ L ++    
Sbjct: 562 L---KRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHR 618

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
               +A    K+M +     ++++Y+S+++ +  +G   +   ++ +M+          Y
Sbjct: 619 SRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTY 678

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           T ++    K+   + A+ + DE +    T D    N+L+AA+  R  L+ A    N +  
Sbjct: 679 TSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKE 738

Query: 378 KGIKPCYTTWELLTW 392
            G+ P + T+ +L W
Sbjct: 739 NGVLPDHMTYMMLEW 753



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 123/300 (41%), Gaps = 10/300 (3%)

Query: 178 YNHMLNLYISNGQLDK-VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           ++ ++ ++ +N  L+  V   LQ  K        + N  L   A  N +E     F E+K
Sbjct: 182 FDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMK 241

Query: 237 KTKIDPDWISYSTLTSLYIKMELPE------KAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            T   P+  +Y+ + + Y K    E      +A   L+EME+       V YS+ +    
Sbjct: 242 STGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLC 301

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
            +GY +  L   + ++S    +N   Y  +I  L K GE ++A  + +E +S   + D  
Sbjct: 302 RVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVY 361

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             +IL+  +  +  +E        +    ++P   ++  L  G  KK   +  L+ F+  
Sbjct: 362 TYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDL 421

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAG 469
             +  K+  D    +        QGD+D A  L+  + RN        + SL+  + K G
Sbjct: 422 GAAGYKY--DQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMG 479



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 154/398 (38%), Gaps = 47/398 (11%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--GQLD----KVP 195
           +C+ LL    +  +     +L E+M   G       Y  M+N Y     G+ D    +  
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQAT 275

Query: 196 QMLQELKKNT-SPDVVTY-----------------------------------NLWLAAC 219
           ++L+E+++N  SP VVTY                                   N  +   
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGL 335

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
             + + + A K   E+K   I PD  +YS L   + K    EK    ++EM+      + 
Sbjct: 336 CKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSL 395

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V+YSSL          D  L I++ + +   K +   Y+ +I      G+ + A  + +E
Sbjct: 396 VSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEE 455

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
               +   DP     L+  +        A  F+N ++  GI P   T  ++   + ++G+
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGR 515

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIY 458
           +E+ L    +     +   P+     A  N+L ++   + A  L  + L+     S  +Y
Sbjct: 516 VEEALNLMNEM--QTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVY 573

Query: 459 NSLLRTYAKA--GKMPLIIVERMQKDNVQMDAETQKVL 494
           ++L+  +AK    +  L++  RM K  V  D     +L
Sbjct: 574 STLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTIL 611



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/448 (19%), Positives = 180/448 (40%), Gaps = 44/448 (9%)

Query: 88  KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL--PDKMRGPDTCSA 145
           + A E+ E ME   +   V   Y+ ++  + ++  + SA +F  +L   + +      +A
Sbjct: 272 RQATEILEEMERNGESPTVV-TYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNA 330

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           ++H   +  +  EA  ++E+M  CG       Y+ +++ +   G ++K   +++E+K  N
Sbjct: 331 IIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSN 390

Query: 205 TSPDVVTY-NLWLAAC----------------------------------ASQNDKETAE 229
             P +V+Y +L+   C                                    Q D ++A 
Sbjct: 391 MEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAH 450

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           K   E+ +  + PD  ++ +L   + KM L   A      M +     +    + ++  +
Sbjct: 451 KLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAH 510

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G  +E L +  +M +     N   Y  VI+ L K  + E+A  ++      +     
Sbjct: 511 CREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSV 570

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            V + L+  +  ++  + A   Y R++  G+ P    + +L      + +M +    FKK
Sbjct: 571 VVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKK 630

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
              +     PD    T+        GD+  A  L   +   GH+ T + Y SL+  Y K 
Sbjct: 631 M--TENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKM 688

Query: 469 GKMPL--IIVERMQKDNVQMDAETQKVL 494
            ++ +  ++++ M++  +  D  T  VL
Sbjct: 689 NRIDIADMLIDEMKRKGITPDVVTYNVL 716



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/314 (19%), Positives = 120/314 (38%), Gaps = 38/314 (12%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELK 202
           S L+  +        A  LME+M        P  +  +++ +   G  ++ +      L+
Sbjct: 434 SILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLE 493

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               P + T N+ + A   +   E A     E++   I P+  +Y+ + +   K    E+
Sbjct: 494 GGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSER 553

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM---------------- 306
           A      M KR    + V YS+L+  +       + L ++ +M+                
Sbjct: 554 ALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILIN 613

Query: 307 ------------SLFAKMND-------AEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                       +LF KM +         YT VI+   ++G+  KA  +++E        
Sbjct: 614 ILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLP 673

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
                  L+  Y   N++++A+   + +  KGI P   T+ +L   + ++G ++K LE  
Sbjct: 674 TVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEML 733

Query: 408 KKAIGSVRKWVPDH 421
            +        +PDH
Sbjct: 734 NEM--KENGVLPDH 745


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 183/430 (42%), Gaps = 57/430 (13%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAE 127
           +Y  + ++    K  R+  AL   + ME       V GD  ++ +LI   R L   S A 
Sbjct: 9   RYTYSTLITHFGKEGRFDDALSWLQKMEEDR----VPGDLVLYSNLIELSRKLCDYSKAI 64

Query: 128 NFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
           + F  L      PD  +  ++++ + + K   EA +L+ +M   G +   + Y+ +L +Y
Sbjct: 65  SIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMY 124

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
           + N +  +   +  E+++   S D++T N+ +         + A+K F   +K +I+P+ 
Sbjct: 125 VENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNV 184

Query: 245 ISYSTLTSLYIKMEL-----------------------------------PEKAATTLKE 269
           +SY+TL  +Y   EL                                    EKA   ++E
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQE 244

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+ R    N + YS+++S++  +G  D    +++K+ S   +++   Y  +I +  + G 
Sbjct: 245 MQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGL 304

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
              A+ +  E +           +IL  A     ++E A   + + +  G     T +E 
Sbjct: 305 VAHAKRLLHELKRPDNIPRDTAIHILAGA----GRIEEATWVFRQAIEAGEVKDITVFEH 360

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR---LITAAYNKLEEQGDIDGAEHLLVT 446
           +   + K  +   ++E F K  G    + PD R   L+  AY KL+E    D A  + + 
Sbjct: 361 MIDLFSKYKKYSNIIEVFDKMRGI--GYFPDSRVIALVLNAYGKLQE---FDKANEVYME 415

Query: 447 LRNAGHVSTE 456
           +++ G + ++
Sbjct: 416 MQDEGCIFSD 425



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/298 (18%), Positives = 130/298 (43%), Gaps = 7/298 (2%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    KA +
Sbjct: 6   SPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAIS 65

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
               +++     + VAY+S+++++       E   +  +M +     N   Y+ +++  V
Sbjct: 66  IFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYV 125

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           +  +F +A +++ E   I  + D    NI++  Y      + A+  +       I+P   
Sbjct: 126 ENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVV 185

Query: 386 TWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    + A +L+
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEH---EKANNLI 242

Query: 445 VTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKITSE 499
             ++N G   +T  Y++++  + K GK+    ++ ++++   +++D    + + IT E
Sbjct: 243 QEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYE 300


>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 406

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 14/235 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK- 236
           ++H L +Y    Q+D +          T    +++N+ L+AC +    +   + F E+  
Sbjct: 116 FDHALKIY---DQMDDL---------GTPRSAISFNVLLSACVNTKQYDRVRQLFDEMPV 163

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    PD +SY  L   Y +M LPEKA   LKEME++      + +++LL  +   G  D
Sbjct: 164 KYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKGMGD 223

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  ++W +M++     +   Y   I + ++ G+ E  + + +E  +     D    N L+
Sbjct: 224 EAEKVWNEMVNKGCGPDVGAYNVKIRN-IQGGDPEGVKALIEEMNNAGLKPDTISYNYLM 282

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
             Y     ++ A+  Y  L T G  P   T+  L     KKG+ E   + FK+++
Sbjct: 283 TCYCENGLMDEAQKVYEDLETNGCNPNAATFRSLILYLCKKGRFETGYKVFKESV 337



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 126 AENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE---ALMEKMSECGFLKCPLPYNHML 182
           AE  +  + +K  GPD      +  ++N +  + E   AL+E+M+  G     + YN+++
Sbjct: 225 AEKVWNEMVNKGCGPDV--GAYNVKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYNYLM 282

Query: 183 NLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241
             Y  NG +D+  ++ ++L+ N  +P+  T+   +     +   ET  K F E  +    
Sbjct: 283 TCYCENGLMDEAQKVYEDLETNGCNPNAATFRSLILYLCKKGRFETGYKVFKESVRVNKM 342

Query: 242 PDWISYSTLTSLYIKME 258
           PD+ +   L    +K E
Sbjct: 343 PDFNTLKCLVEGLVKRE 359



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 48/195 (24%)

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNR 374
           + +I S    G F+ A  IYD+ + +   G PR     N+LL+A +N  Q +     ++ 
Sbjct: 104 SSIIRSYGIAGMFDHALKIYDQMDDL---GTPRSAISFNVLLSACVNTKQYDRVRQLFDE 160

Query: 375 LVTK-GIKPCYTTWELLTWGYLKKGQMEKVLE-----------------------CFKKA 410
           +  K G  P   ++ +L   Y + G  EK +E                        +KK 
Sbjct: 161 MPVKYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKG 220

Query: 411 IGSVRKWV----------PDHRLITAAYN---KLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           +G   + V          PD      AYN   +  + GD +G + L+  + NAG     I
Sbjct: 221 MGDEAEKVWNEMVNKGCGPD----VGAYNVKIRNIQGGDPEGVKALIEEMNNAGLKPDTI 276

Query: 458 -YNSLLRTYAKAGKM 471
            YN L+  Y + G M
Sbjct: 277 SYNYLMTCYCENGLM 291


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 169/382 (44%), Gaps = 20/382 (5%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTC------SALLHSYVQNKKSAEAEALMEKMS 167
           L+L+ K R + +A   ++ + D+  G D C      S ++       +  +   L+E   
Sbjct: 176 LNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRW 235

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G +   + YN +++ Y   G+++   ++ ++LK K   P + T+   +         E
Sbjct: 236 GKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFE 295

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
             +   LE+K   +  +   Y+ +     K+    KA  TLKEM +  C  + V Y++L+
Sbjct: 296 AIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLI 355

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           + + + G  +E  ++ ++ +      N   YT ++    K GE+ KA +   E  +    
Sbjct: 356 NHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLE 415

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--MEKVL 404
            D      L+   +   +++ A +  +R++ +GI P    + +L  G  KKG+  M KV+
Sbjct: 416 VDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVM 475

Query: 405 --ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSL 461
             E   + I       PD  +     +     G++D A+ L   +   G     + YN +
Sbjct: 476 LTEMLDQNIA------PDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVM 529

Query: 462 LRTYAKAGKM--PLIIVERMQK 481
           ++ ++K+G M   ++ +++M++
Sbjct: 530 IKGFSKSGMMDNAILCIDKMRR 551



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 115/291 (39%), Gaps = 42/291 (14%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
            AL+H  V   +   A  + ++M   G L     YN ++N     G+L     ML E L 
Sbjct: 422 GALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 481

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N +PD   Y   +       + + A+K F  + +  +DP  + Y+ +   + K  + + 
Sbjct: 482 QNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDN 541

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   + +M +     +   +S+++  Y      + VL+I+  M+    K N   YT +I+
Sbjct: 542 AILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLIN 601

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
                                               Y  + + +MAE  ++ + + G+KP
Sbjct: 602 -----------------------------------GYCRKGETKMAEKLFSMMRSHGLKP 626

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYN 429
              T+ +L   + K+ ++ K +  F+  +  + K  P+    H L+    N
Sbjct: 627 SVVTYSILIGSFCKEAKLGKAVSYFELML--INKCTPNDAAFHYLVNGFTN 675



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 111/267 (41%), Gaps = 29/267 (10%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           LPD     +  + L++   +  K + A+ ++ +M +         Y  +++ +I +G LD
Sbjct: 450 LPD----ANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLD 505

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++ Q + +K   P VV YN+ +   +     + A     ++++    PD  ++ST+ 
Sbjct: 506 EAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTII 565

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y+K             M K+ C+ N V Y+SL++ Y   G      +++  M S   K
Sbjct: 566 DGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLK 625

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIY-------------------DEWESISGTGDPRVP 352
            +   Y+ +I S  K  +  KA + +                   + + +   T   R P
Sbjct: 626 PSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREP 685

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKG 379
           N L     + N   M E F++R++  G
Sbjct: 686 NNL-----HENSRSMFEDFFSRMIGDG 707



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 10/211 (4%)

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC--VISS 323
           TL+EM+ +     R A S +L  Y ++G  D+ L ++  ++ L   +  + Y C  +++ 
Sbjct: 120 TLEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSL-PSTYACNSLLNL 178

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPN----ILLAAYINRNQLEMAESFYNRLVTKG 379
           LVK    E A  +YDE        D  V N    I++     + ++E           KG
Sbjct: 179 LVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKG 238

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
             P    +  L  GY KKG++E   + FKK    ++ ++P  +   +  N   + G  + 
Sbjct: 239 CVPNIVFYNTLIDGYCKKGEVESAYKLFKKL--KMKGFIPTLQTFGSLVNGFCKMGMFEA 296

Query: 440 AEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            + LL+ +++ G  V+ ++YN+++    K G
Sbjct: 297 IDLLLLEMKDRGLSVNVQMYNNIIDARYKLG 327



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 7/296 (2%)

Query: 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164
           ++   Y +  D+ +K      +EN  E  PD +    T + L++ +    +  EAE L+E
Sbjct: 319 IIDARYKLGFDIKAKDTLKEMSENCCE--PDLV----TYNTLINHFCSRGEVEEAEKLLE 372

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQN 223
           +    G     L Y  +++ Y   G+  K    L E+  +    D+++Y   +       
Sbjct: 373 QTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAG 432

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           + +TA      +    I PD   Y+ L +   K      A   L EM  +    +   Y+
Sbjct: 433 EVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYA 492

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+  +   G  DE  ++++ ++          Y  +I    K G  + A    D+    
Sbjct: 493 TLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRA 552

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
               D    + ++  Y+ ++ +      +  +V +  KP   T+  L  GY +KG+
Sbjct: 553 HHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGE 608


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 178/381 (46%), Gaps = 35/381 (9%)

Query: 140 PDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL----DK 193
           PDT   + L+  + +N    E     ++MS        + YN +++     G++    + 
Sbjct: 166 PDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNV 225

Query: 194 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           V  M++++K + SPDVVTY   +     + + + A   F E+    + P+ I+Y+TL   
Sbjct: 226 VKGMVKKMK-DLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKG 284

Query: 254 YIKMELPEKAATTLK-EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
             +++  +K    L   +  R    +   Y++L++   + G  DE L+++KKM  L  + 
Sbjct: 285 LCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQP 344

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEW--ESISGTGDPRVPNILLAAY-------INRN 363
           + A Y+ +I +L + G+FE+AE ++D+   E I    D   P  L+AAY           
Sbjct: 345 DSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTP--LVAAYNPIFDFLCKNG 402

Query: 364 QLEMAESFYNRLVTKGIK--PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPD 420
           +   AE  + +L+ KG +  P Y T   L  G+ K+G  E     +K  +  +R+ +VPD
Sbjct: 403 KTHKAERVFRQLMKKGTQDPPSYKT---LIIGHCKEGTFEA---GYKLLLFMLRRDYVPD 456

Query: 421 HRLITAAYNKLEEQGD-IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK------AGKMPL 473
                   N   ++G+ I   + L   L+++    T +++S+L    K      +    +
Sbjct: 457 FETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVV 516

Query: 474 IIVERMQKDNVQMDAETQKVL 494
           ++++R  + N+ +   T ++L
Sbjct: 517 LMIDRKIRQNINLSTHTMRLL 537


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 8/299 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L+ SY ++ +  EAE L  +M   G       +N +++ Y    Q D + ++L E++ 
Sbjct: 85  NTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQD 144

Query: 204 -NTSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
              +P+  +Y   ++A   Q    + A  AFL +KK  I P   SY+ L   Y      E
Sbjct: 145 AGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHE 204

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA  T + M++   + +   Y++LL  +   G    ++ IWK MM    +     +  ++
Sbjct: 205 KAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILL 264

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G + +A ++ +E++           N+L+ AY    Q          + T  ++
Sbjct: 265 DGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLE 324

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   T+  + + Y++     +     K  + S +  VPD +    +Y KL    D+  A
Sbjct: 325 PDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGK--VPDAK----SYQKLRAILDVKAA 377



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I S    G  ++A  I  E E    + +  + N L+ +Y   NQ+E AE  Y+ +  K
Sbjct: 51  ALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAK 110

Query: 379 GIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           G+KP   T+ +L   Y ++ Q   +EK+L   + A   +      +  + +AY + ++  
Sbjct: 111 GLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDA--GLAPNAKSYTCLISAYGRQKKMS 168

Query: 436 DIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQK 492
           D+  A    + ++ AG   T   Y +L+  Y+ +G  +   I  E MQ++ ++   ET  
Sbjct: 169 DM--AADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYT 226

Query: 493 VL 494
            L
Sbjct: 227 TL 228



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 15/253 (5%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+++  I  + I Y+TL   Y K    E+A     EM+ +  +     ++ L+  Y+   
Sbjct: 71  EMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRM 130

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI-YDEWESISGTGDPRVP 352
             D + ++  +M       N   YTC+IS+    G  +K  ++  D +  +   G     
Sbjct: 131 QPDIIEKLLLEMQDAGLAPNAKSYTCLISA---YGRQKKMSDMAADAFLRMKKAGIKPTS 187

Query: 353 ---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
                L+ AY      E A   +  +  +GIKP   T+  L   + + G  + +++ +K 
Sbjct: 188 YSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKL 247

Query: 410 AIGSVRKWVPDHRL-ITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAK 467
            +   R+ V   R+      +   +QG    A  ++   +  G H +   YN L+  YA+
Sbjct: 248 MM---REKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYAR 304

Query: 468 AG---KMPLIIVE 477
            G   K+P ++ E
Sbjct: 305 GGQDSKLPQLLKE 317



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + LL  + +     EA  ++ +  + G     + YN ++N Y   GQ  K+PQ+L+E+
Sbjct: 259 TFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEM 318

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
                 PD +TY   + A     D   A      + K+   PD  SY  L ++
Sbjct: 319 ATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDAKSYQKLRAI 371


>gi|302822814|ref|XP_002993063.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
 gi|300139155|gb|EFJ05902.1| hypothetical protein SELMODRAFT_431180 [Selaginella moellendorffii]
          Length = 570

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 199/468 (42%), Gaps = 24/468 (5%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           ++L+  V A R+    +R ++E    + K  +  ++ +L + ++YK   +V  +M     
Sbjct: 105 KKLIKGVDASRN---VVRVFRENELDMTKAMMRGVLFKLLRNEKYKPGWKVANYMIRSEK 161

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL-HSYVQNKKSAEAEA 161
            +L   DY   +   +      +AEN F NLP   +       L+  S  Q +     E 
Sbjct: 162 FELGELDYMFQIAFAALAGCDRAAENMFANLPRVYKRKKALLVLMAGSSPQRENRVVMER 221

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           L +++    +       N M+   +      ++P + +E K    +PDV +YNL+L    
Sbjct: 222 LFKELKHRSWYTEASALNQMMLFSLQPDLRKRIPDLFEEAKSLGVAPDVSSYNLYLGFHC 281

Query: 221 SQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK----RTC 275
            + +    E+ +  L++     PD  +   L   YI +   +KA   L E+E+       
Sbjct: 282 KEKNASGLEEVYQMLQEDPNARPDESTLLILACGYISVGCFDKAGKALVELEEGLDSGLF 341

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           R+ +  Y+ LL LY +   K+ V  IW  + S   K  D+ Y+  I++  K     KAE 
Sbjct: 342 RRKQATYNKLLRLYGDTKDKEGVESIWSILSSRPLKAVDS-YSYAIAAFGKAEGVHKAEE 400

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I+ +   + G  +      +L+ Y +    + A   + +L  K +K     ++ L  GYL
Sbjct: 401 IFAK---VDGLLETNQVIAMLSVYAHYGYADKARELFQKLPRKRMKHRLVVYKYLIAGYL 457

Query: 396 KKGQMEKVLECFKKAIGSVRK------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           ++G+++K L+ F      +R       W    R++    +    +G++   + +      
Sbjct: 458 REGEVKKALQVFSMGCTVLRDRCICSAW---ERVVLDLLDHFASRGEVAVIDRIFRMNSV 514

Query: 450 AGH-VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
             H ++  +Y  +L+ Y   G      ++   +    +DAET+++L +
Sbjct: 515 LKHFINMRVYRVVLKAYLNHGASLKRFMDWTMEMGFSVDAETRELLTL 562


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 11/269 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S L+H +V+      A  +  KM  CG     + Y  M+++   N   D+  +++  +
Sbjct: 390 TYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNM 449

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +   P VVT+N ++           A +   ++++    PD  +Y+ L      +   
Sbjct: 450 ATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNEL 509

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   ++E+E+R    N V Y++++  +++ G ++ VL++  +M+    K +      V
Sbjct: 510 KEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVV 569

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I +  KLG+   A    D   +    G    P+I     LL    N   +E A  + N++
Sbjct: 570 IYAYSKLGKVRTAIQFLDRITA----GKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKM 625

Query: 376 VTKGIKPCYTTWELLTWGYLKK-GQMEKV 403
           + KGI P   TW++L  G+ KK G M  +
Sbjct: 626 LNKGIFPNIATWDVLVRGFFKKLGHMGPI 654



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 36/257 (14%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA- 218
           A+ E M   G       YN +L     NG+LD   ++L E+ K+   PD V+Y   +AA 
Sbjct: 166 AVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAM 225

Query: 219 CASQNDKETAEKA-------------------------------FLELKKTKIDPDWISY 247
           C     +E  E A                                 E+    +DP+ +SY
Sbjct: 226 CEDGRVEEAREVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSY 285

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S++ S    +   E A   L +M +R CR N   +SSL+  Y   G   E + +W+ M+ 
Sbjct: 286 SSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVL 345

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQL 365
              + N   Y  +++ L   G   +A ++    E       P V   + L+  ++    L
Sbjct: 346 EGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEK-DCFCRPNVTTYSTLVHGFVKAGDL 404

Query: 366 EMAESFYNRLVTKGIKP 382
           + A   +N++V  G++P
Sbjct: 405 QGASEVWNKMVNCGVRP 421



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 6/233 (2%)

Query: 203 KNTSPDVVTYNLWL-AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +   P+VV YN  L   C S N  E  +      K     P+  +YSTL   ++K    +
Sbjct: 346 EGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQ 405

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A+    +M     R N V Y+S++ +       D+  R+   M +         +   I
Sbjct: 406 GASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFI 465

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
             L   G    A  + D+ +      D R  N LL    + N+L+ A      L  + ++
Sbjct: 466 KGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVE 525

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKL 431
               T+  + +G+   G+ E VL+   + +  V    PD     ++  AY+KL
Sbjct: 526 LNLVTYNTVMYGFSSHGKEEWVLQVLGRML--VNGVKPDAITVNVVIYAYSKL 576



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC--ASQNDKETAEKAFLELKK 237
           +LN Y ++G  D+  +M   +K+    P V  YN  L A    S N        +  ++ 
Sbjct: 114 VLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRG 173

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             ++P+  +Y+ L     K    + A   L EM KR C  + V+Y+++++     G  +E
Sbjct: 174 EGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEE 233

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI-- 354
              + ++     A+   +    +I  L + G   +   + DE   + G G DP V +   
Sbjct: 234 AREVARR---FGAEGVVSVCNALICGLCREGRVGEVFGLMDE---MVGNGVDPNVVSYSS 287

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +++   +  ++E+A +   +++ +G +P   T+  L  GY   G++
Sbjct: 288 VISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRV 333


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 154/364 (42%), Gaps = 22/364 (6%)

Query: 67  HTV----HKYELNRIVRELRKLKR----YKHALEVC------EWMELQYDI-----KLVS 107
           HTV    H+ EL  I  +L  L      + H  +VC      E +    D+     +L  
Sbjct: 25  HTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLHFHDDVIAKGFQLNQ 84

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEK 165
             Y   +D + K     +A     N+   +  P+    S +++S  ++K   +A  L  +
Sbjct: 85  VSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQ 144

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQND 224
           M         + YN ++   +  G+L +   +  Q L KN  PD+ T+N+ +     + +
Sbjct: 145 MLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGE 204

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + A      + K  +DPD I+Y++L   Y  ++   KA      M +R    +  +YS 
Sbjct: 205 MKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSV 264

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +++        DE + + K+M S     N   Y+ +I  L K G    A ++ +E  +  
Sbjct: 265 MINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRG 324

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
              D    N LL A    +Q++ A +   ++  +GI+P   T+ +L  G  K G+++   
Sbjct: 325 QPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQ 384

Query: 405 ECFK 408
           E ++
Sbjct: 385 EVYQ 388



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y+V ++ + K + +  A N  + +  K   P+T   S+L+    ++ +  +A  L+ +M 
Sbjct: 262 YSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMH 321

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G     + YN +L+    N Q+DK   +L ++K +   PD+ TY + +         +
Sbjct: 322 NRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLK 381

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A++ +  L         I    L SL+      +KA + L +ME   C  N V +  L+
Sbjct: 382 DAQEVYQIL--------LIKGYHLDSLF------DKALSLLSKMEDNGCTPNPVTFEILI 427

Query: 287 SLYTNMGYKDEVLRIWKKMMS 307
                    D+ + + ++M++
Sbjct: 428 RALFENDMNDKAVELLREMIA 448


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 10/365 (2%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T ++L++ + +     +A  +++ M E GF      YN +++     G+ +K
Sbjct: 261 PDQV----TFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEK 316

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
             ++LQ++  +  SP+ VTYN  ++A   +N+ E A      L    + PD  +++TL  
Sbjct: 317 AIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQ 376

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
                +  + A    +EM+ + C+ +   YS L+          E L + K+M S     
Sbjct: 377 GLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCAR 436

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   Y  +I  L K    E AE I+D+ E +  +      N L+       ++E A    
Sbjct: 437 NAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLM 496

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
           ++++ +G+KP   T+  L   + + G +EK  +  +    +     PD          L 
Sbjct: 497 DQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTM--ASNGCEPDIFTYGTLIGGLC 554

Query: 433 EQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTY--AKAGKMPLIIVERMQKDNVQMDAE 489
             G +D A  LL +++  G V T   YN +++     K  K  + +   M + +   DA 
Sbjct: 555 RAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDAL 614

Query: 490 TQKVL 494
           T K++
Sbjct: 615 THKIV 619



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 118/291 (40%), Gaps = 5/291 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD   YN+ L A    N  +  E    ++    I  D  +++ L     K      A   
Sbjct: 121 PDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILM 180

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L+EM     + + + +++L+  +   G  +  L++ K+M+     + +     +++   K
Sbjct: 181 LEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCK 240

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  E+A     E      + D    N L+  +     +  A    + ++ KG  P   T
Sbjct: 241 EGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYT 300

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G  K G+ EK +E  ++ I  +R+  P+        + L ++ +I+ A  L   
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMI--LRECSPNTVTYNTLISALCKENEIEAATDLARI 358

Query: 447 LRNAGHV-STEIYNSLLR--TYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           L + G +     +N+L++    +K   + + + E M+    + D  T  +L
Sbjct: 359 LVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 152/374 (40%), Gaps = 45/374 (12%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ--------YDIKLVSG------- 108
           E+G     Y  N ++  + KL  ++ A+E+ + M L+        Y+  L+S        
Sbjct: 291 EKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYN-TLISALCKENEI 349

Query: 109 DYAVHLD--LISK------------IRGLSSAEN------FFENLPDKMRGPD--TCSAL 146
           + A  L   L+SK            I+GL  ++N       FE + +K   PD  T S L
Sbjct: 350 EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409

Query: 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNT 205
           + S    ++  EA  L+++M   G  +  + YN +++    + +++   ++  +++    
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           S   VTYN  +         E A +   ++    + PD  +Y++L + + ++   EKA  
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD 529

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            ++ M    C  +   Y +L+      G  D   ++ + +      +    Y  VI +L 
Sbjct: 530 IVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALF 589

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQLEMAESFYNRLVTKGIKPCY 384
                ++   ++ E    S   D     I+     N    ++ A  F   ++ KGI P  
Sbjct: 590 MRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILP-- 647

Query: 385 TTWELLTWGYLKKG 398
              E  ++G+L +G
Sbjct: 648 ---EFPSFGFLAEG 658


>gi|302780277|ref|XP_002971913.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
 gi|300160212|gb|EFJ26830.1| hypothetical protein SELMODRAFT_412643 [Selaginella moellendorffii]
          Length = 570

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 199/468 (42%), Gaps = 24/468 (5%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD 102
           ++L+  V A R+    +R ++E    + K  +  ++ +L + ++YK   +V  +M     
Sbjct: 105 KKLIKGVDASRN---VVRVFRENELDMTKAMMRGVLFKLLRNEKYKPGWKVANYMIRSEK 161

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL-HSYVQNKKSAEAEA 161
            +L   DY   +   +      +AEN F NLP   +       L+  S  Q +     E 
Sbjct: 162 FELGELDYMFQIAFAALAGCDRAAENIFANLPRVYKRKKALLVLMAGSSPQRENRVVMEK 221

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           L +++    +       N M+   +      ++P + +E K    +PDV +YNL+L    
Sbjct: 222 LFKELKHRSWYTEASGLNQMMLFSLQPDLRKRIPDLFEEAKSLGVAPDVSSYNLYLGFHC 281

Query: 221 SQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK----RTC 275
            + +    E+ +  L++     PD  +   L   YI +   +KA   L E+E+       
Sbjct: 282 KEKNASGLEEVYQMLQEDPNARPDESTLLILACGYISVGCFDKAGKALVELEEGLDSGLF 341

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
           R+ +  Y+ LL LY +   K+ V  IW  + S   K  D+ Y+  I++  K     KAE 
Sbjct: 342 RRKQATYNKLLRLYGDTKDKEGVENIWSILSSRPLKAVDS-YSYAIAAFGKAEGVHKAEE 400

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I+ +   + G  +      +L+ Y +    + A   + +L  K +K     ++ L  GYL
Sbjct: 401 IFAK---VDGLLETNQVIAMLSVYTHYGYADKARELFQKLPRKRMKHRLVVYKYLIAGYL 457

Query: 396 KKGQMEKVLECFKKAIGSVRK------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           ++G+++K L+ F      +R       W    R++    +    +G++   + +      
Sbjct: 458 REGEVKKALQVFTMGCTVLRDRCICSAW---ERVVLDLLDHFASRGEVAVIDRIFRMNSV 514

Query: 450 AGH-VSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
             H ++  +Y  +L+ Y   G      ++   +    +DAET+++L +
Sbjct: 515 LKHFINMRVYRVVLKAYLNHGASLKRFMDWTMEMGFSVDAETRELLTL 562


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 166/390 (42%), Gaps = 14/390 (3%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEK 165
           G+  + L+ I     +  A +   +LP     PD  S  A+L      K+    + LME+
Sbjct: 230 GNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEE 289

Query: 166 MSECGFLKCP---LPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACAS 221
           M     + CP   + +N +++    NG  ++V ++L Q ++   +PD+  Y   +     
Sbjct: 290 MVR---MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICK 346

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           +   E A +    +    + P+ + Y+TL       E  E+    L EM  + C  + V 
Sbjct: 347 EGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 406

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           ++ L+  +   G  D V+ + ++M+      +   YT VI+   K G  ++A  +     
Sbjct: 407 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 466

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +     +     I+L    +  +   AE   ++++ +G      T+  L     KKG +E
Sbjct: 467 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 526

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 460
           + +E  K+ +  V    PD    +   + L + G  D A  LL  + N G   +T IY+S
Sbjct: 527 QAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 584

Query: 461 LLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           +    ++ G++  +I   + +Q   ++ DA
Sbjct: 585 IASALSREGRINKVIQMFDNIQDTTIRSDA 614



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M E G 
Sbjct: 376 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGC 435

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ ++Y + L    S      AE 
Sbjct: 436 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAED 495

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +     + I+++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 496 LMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 555

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE L +   M++     N   Y+ + S+L + G   K   ++D  +  +   D  
Sbjct: 556 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAV 615

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + E A  F   +V+ G  P  +T+ +L  G   +G +++  E   + 
Sbjct: 616 LYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 675

Query: 411 I--GSVRKWVPDH 421
              G++RK +  H
Sbjct: 676 CSKGALRKHLMKH 688



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 119/296 (40%), Gaps = 3/296 (1%)

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
           A+A A++++M   G    P  Y+ +L      G      ++L++L  +  + DV   NL 
Sbjct: 176 ADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLV 235

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           L A   Q   + A     +L     +PD +SY+ +       +        ++EM +  C
Sbjct: 236 LNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMAC 295

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             N V +++L+S     G  + V  +  +M+      +   Y  +I  + K G  E A  
Sbjct: 296 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHE 355

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           I +   S     +    N LL    +  + E  E     +  K       T+ +L   + 
Sbjct: 356 ILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC 415

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           + G +++V+E  ++ +      +PD    T   N   ++G ID A  LL ++   G
Sbjct: 416 QNGLVDRVIELLEQMLE--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 469


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 185/467 (39%), Gaps = 68/467 (14%)

Query: 47  SLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV 106
            LV    +  + +R   EEG     YEL R +R+        H L +    E    IK +
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRD--------HGL-LPSTNEFNMVIKGL 362

Query: 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 166
             D  +  D +S  + ++ +      +PD      T + L+H   Q +K  EA  L EKM
Sbjct: 363 LND-KLWKDAVSLFKEMADS-----GIPDAF----TYNILIHWLCQRRKIREALNLWEKM 412

Query: 167 SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDK 225
           +E G     + Y+ +L  Y  NG +D+  ++  E+  K  +P+VVTY   +    ++   
Sbjct: 413 NETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAF 472

Query: 226 ETAEKAFLELKKTKID-----------------------------------PDWISYSTL 250
           + A     E+K+  +                                    P  ++Y+++
Sbjct: 473 DKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSI 532

Query: 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310
            + +IK  +   A    ++M  +    N V Y+S +  Y      D  L++   +     
Sbjct: 533 INGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGL 592

Query: 311 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQL 365
           + + A Y  +I    + G    A  +      +    D  +PNI      +  Y N   +
Sbjct: 593 RPDIAAYNSLIFGFCQEGNMSHALQVL-----VLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
           E A   Y +++ +GI     T+  L  G+ K G +   L+ + + +   +  +PDH   T
Sbjct: 648 EEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVA--KGNIPDHITFT 705

Query: 426 AAYNKLEEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKM 471
           A  + L   GDID A  LL  + R     +  +YN L+  Y + GK+
Sbjct: 706 ALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKL 752



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 187/455 (41%), Gaps = 28/455 (6%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEV-CEWMELQYDIKLVSGDYAVH 113
           A + +RK ++ G     +  N +V  L K  R + AL +  E +     + +V     +H
Sbjct: 231 ALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMH 290

Query: 114 LDLISKIRGLSSAENFFE-NLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
              +   R +  A + FE  L D +   D T + L+    +     +A  L  +M + G 
Sbjct: 291 GYCLQ--REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGL 348

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL---WLAACASQNDKETA 228
           L     +N ++   +++        + +E+  +  PD  TYN+   WL  C  +  +E A
Sbjct: 349 LPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWL--CQRRKIRE-A 405

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              + ++ +T + P  ++Y +L   Y      ++A     EM  +    N V Y++L+  
Sbjct: 406 LNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKG 465

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           + N    D+   +  +M       ND  Y  +I+ L  +G   +   +   +E+      
Sbjct: 466 HINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPT 525

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               N ++  +I    +  A + Y ++  KGI P   T+     GY K    +  L    
Sbjct: 526 AMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL---- 581

Query: 409 KAIGSVR--KWVPDHRLITAAYNKLE----EQGDIDGAEHLLVTLRNAGHV-STEIYNSL 461
           K +  VR     PD     AAYN L     ++G++  A  +LV +   G + +  +YNS 
Sbjct: 582 KMLNDVRCKGLRPD----IAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF 637

Query: 462 LRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           +  Y     M   L + E+M K+ + +D  T   L
Sbjct: 638 ITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL 672



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 120/280 (42%), Gaps = 3/280 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++      +  E   ++++    GF+   + YN ++N +I  G +     + Q++
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   P++VTY  ++      +  + A K   +++   + PD  +Y++L   + +    
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNM 612

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L  M K     N   Y+S ++ Y N+   +E LR+++KM+     ++ A YT +
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTL 672

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K G    A  +Y E  +     D      L         ++ A    + +    I
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDI 732

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
           +P    + +L  GYL+ G++++      + +   RK +PD
Sbjct: 733 RPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE--RKIMPD 770



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 31/362 (8%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A   F+ +P     PD   CS  + S  + + +  A  ++ KM + GF+     +N +++
Sbjct: 196 AVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVD 255

Query: 184 LYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
           + +  G++++   +  E L       VV     +     Q +   A   F E  +  + P
Sbjct: 256 VLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVP 315

Query: 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302
             ++Y+ L     +  +PEKA    ++M       +   ++ ++    N        ++W
Sbjct: 316 TDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLND-------KLW 368

Query: 303 KKMMSLFAKMNDA------EYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI- 354
           K  +SLF +M D+       Y  +I  L +  +  +A N+   WE ++ TG  P +    
Sbjct: 369 KDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNL---WEKMNETGVKPYIVTYH 425

Query: 355 -LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKA 410
            LL  Y     ++ A   Y  +  KG  P   T+  L  G++ K   +K   +L   K+ 
Sbjct: 426 SLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
             S   +           N L   G +     +L      G V T + YNS++  + KAG
Sbjct: 486 GVSCNDYT-----YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540

Query: 470 KM 471
            M
Sbjct: 541 MM 542



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/251 (17%), Positives = 116/251 (46%), Gaps = 1/251 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +++++ +++      A A+ ++M   G     + Y   ++ Y      D   +ML ++
Sbjct: 528 TYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDV 587

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PD+  YN  +     + +   A +  + + K  + P+   Y++  + Y  +++ 
Sbjct: 588 RCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMM 647

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++M K     +   Y++L+  ++  G     L+++ +M++     +   +T +
Sbjct: 648 EEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTAL 707

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
              L + G+ + A  + DE   +    +  + N+L+  Y+   +L+ A   ++ ++ + I
Sbjct: 708 THGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKI 767

Query: 381 KPCYTTWELLT 391
            P  TT+++L 
Sbjct: 768 MPDDTTYDILV 778



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 33/288 (11%)

Query: 200 ELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E++    P D   +++ + AC  +   + A + F E+  ++I+PD    S   +   K+ 
Sbjct: 167 EMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              +A   L++M+          ++S++ +    G  +E L I  ++++   KM+    T
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLAT 286

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESFYN 373
            ++       E  KA +I++E        D  VP      +L+         E A     
Sbjct: 287 TLMHGYCLQREVRKALDIFEETLR-----DGLVPTDVTYTVLIRGCTEEGMPEKAYELCR 341

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS----------VRKWVPDHRL 423
           ++   G+ P    + ++  G L     +  +  FK+   S          +  W+   R 
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRK 401

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           I  A N  E+  +  G +  +VT           Y+SLL  Y   G M
Sbjct: 402 IREALNLWEKMNET-GVKPYIVT-----------YHSLLLCYCVNGCM 437


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 146/328 (44%), Gaps = 3/328 (0%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSA 145
           +K AL V  W E     K  +  Y + +D++ K +     + F E +  DK+   +T + 
Sbjct: 99  WKSALGVLNWAESCKGHKHSNDAYDMAVDILGKAKKWDRLKVFVERMRGDKLVTLNTIAK 158

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           ++  +    +  EA  + +K+ E G  K     N +L+      ++++   +L ELK + 
Sbjct: 159 IMRRFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLELKSHI 218

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P+  T+N+++      N  E A     E+K     P  ISY+T+   Y +     K   
Sbjct: 219 TPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYE 278

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L EME      N + Y++++S        +E LR+  +M     + +   Y C+I +L 
Sbjct: 279 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLA 338

Query: 326 KLGEFEKAENIYD-EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC 383
           + G  E+AE ++  E   +  + +    N ++A Y + ++ + A      + +  +  P 
Sbjct: 339 RSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPD 398

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAI 411
             T++ L     K+G + +V +  K+ +
Sbjct: 399 VHTYQPLLRSCFKRGDVVEVGKLLKEMV 426


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 14/358 (3%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKV 194
           PD  S  A+L      K+    + LME+M   G   CP   + +N ++     NG  ++V
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVG---CPPNVVTFNTLIGYLCRNGLFERV 279

Query: 195 PQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            Q+L Q +    +PD+  Y   L     +   E A +    +    + P+ + Y+T+   
Sbjct: 280 HQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKG 339

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
               E  E+A   L EM    C  + V ++ L+  +   G    V+ + ++M+      +
Sbjct: 340 LCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPD 399

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              YT VI+   K G  ++A  +     +     +     I+L    +  +   AE   +
Sbjct: 400 VITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMS 459

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
           +++ +G  P   T+  +     KKG +E+ +E  K+ +  +    PD    +   + L +
Sbjct: 460 QMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML--LNGCSPDLISYSTVIDGLGK 517

Query: 434 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMDA 488
            G  D A  LL  + N G   +T IY+S+    +K G++  +I   + +Q   ++ DA
Sbjct: 518 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDA 575



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M E G 
Sbjct: 337 LKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGC 396

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ ++Y + L    S      AE 
Sbjct: 397 VPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAED 456

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +    P+ ++++T+ +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 457 LMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLG 516

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE L +   M++     N   Y+ + S+L K G   +   ++D  + ++   D  
Sbjct: 517 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAV 576

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R   + A  F   +V+ G  P  +T+ +L  G   +G +++  E   + 
Sbjct: 577 LYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636

Query: 411 I--GSVRKWVPDH 421
              G++RK    H
Sbjct: 637 CSKGALRKHFMKH 649



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 119/319 (37%), Gaps = 36/319 (11%)

Query: 188 NGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            G +D+  ++L++L  +    PDVV+YN  L            +    E+ +    P+ +
Sbjct: 202 GGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVV 261

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +++TL     +  L E+    L +M    C  +   Y+++L      G+ +    I  +M
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
            S   K N   Y  V+  L     +E+AE +  E        D    NIL+  +     +
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLV 381

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK----------------- 408
                   +++  G  P   T+  +  G+ K+G +++ +   K                 
Sbjct: 382 YRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIV 441

Query: 409 -KAIGSVRKWV---------------PDHRLITAAYNKLEEQGDIDGAEHLL-VTLRNAG 451
            K + S  +WV               P+        N L ++G ++ A  LL   L N  
Sbjct: 442 LKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGC 501

Query: 452 HVSTEIYNSLLRTYAKAGK 470
                 Y++++    KAGK
Sbjct: 502 SPDLISYSTVIDGLGKAGK 520


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 199/510 (39%), Gaps = 96/510 (18%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI----KLVSGD 109
           +A +  R+  + G  +  Y L   V  L K  R++ AL + E  E + D     +++SG 
Sbjct: 250 TAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGL 309

Query: 110 YAVHL-----DLISKIRGLSSAENFFE-------NLPDKMRG----------PDTC---- 143
               L     D +S++R  S   N           L  +  G           + C    
Sbjct: 310 CEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSR 369

Query: 144 ---SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN------------ 188
              ++L+H+Y ++   + A  L++KM +CG     + YN ++     N            
Sbjct: 370 RIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELA 429

Query: 189 -----------------------------GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA 218
                                        G+ +K   +++E+  K   PD  TY+  +  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
             + +  + A   F E+K   + PD  +Y+ L   + K+ L ++A     EM +  C  N
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY- 337
            V Y++L+  Y           +++ M+S     N   YT +I    K G+ EKA  IY 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 338 -----------DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIK 381
                      D +  I   G+ R PNI     L+      ++++ A    + +  +G +
Sbjct: 610 RMRGNADIPDVDMYFKID-DGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P +  ++ L  G+ K G++++    F K   S R + P+    ++  ++L +   +D A 
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM--SERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 442 HLLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
            +L   L N+   +  IY  ++    K GK
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 144/359 (40%), Gaps = 20/359 (5%)

Query: 107 SGDYAVHLDLISKIRG---LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           SG       + +++RG   +   + +F+     +R P+  T  AL+    +  K  EA  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L++ MS  G     + Y+ +++ +   G+LD+   +  ++ ++   P+V TY+  +    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K    + +    P+ I Y+ +     K+   ++A   +  ME++ C  N V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++  +   G  D+ L + ++M +     N   Y  +I+     G  + A  + DE 
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 341 ESISGTGDPRVPNILLAAY------INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           +    T  P+     +A Y       NR +  ++    + +      P    + +L   +
Sbjct: 838 KQ---TYWPK----HMAGYRKVIEGFNR-EFIISLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            K G++E  LE  K           D  L ++    L     +D A  L   +   G +
Sbjct: 890 CKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGI 948



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 15/240 (6%)

Query: 177 PYNHMLNLYISNGQLDKVP-QMLQELKKNTSPDVVT--YNLWLAACASQNDKETAEKAFL 233
           P  H L   +  G  D+VP Q L+E++ +   +++    N+ +  C        A +   
Sbjct: 163 PVYHALLEVLGCGGNDRVPEQFLREIR-DEDKEILGKLLNVLIRKCCRNGLWNVALEELG 221

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            LK     P  ++Y+ L  ++++ +  + A    +EM       +       + L    G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 294 YKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                   W++ ++L  K    ++   YT +IS L +   FE+A +      S S   + 
Sbjct: 282 R-------WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNV 334

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               ILL   + + QL   +   + ++T+G  P    +  L   Y + G      +  KK
Sbjct: 335 VTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 147/328 (44%), Gaps = 3/328 (0%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSA 145
           ++ AL + +W E     K  S  Y + +D++ K +     + F E +  DK+   +T + 
Sbjct: 101 WRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAK 160

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           ++  +    +  EA  + +++ E G  K     N +L+      ++++   +L +LK + 
Sbjct: 161 IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHI 220

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P+  T+N+++      N  E A     E+K     P  ISY+T+   Y +     K   
Sbjct: 221 TPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYE 280

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L EME      N + Y++++S        +E LR+  +M     K +   Y C+I +L 
Sbjct: 281 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 340

Query: 326 KLGEFEKAENIYD-EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC 383
           + G  E+AE ++  E   +  + +    N ++A Y + ++ + A      + +  +  P 
Sbjct: 341 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPD 400

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAI 411
             T++ L     K+G + +V +  K+ +
Sbjct: 401 VHTYQPLLRSCFKRGDVVEVGKLLKEMV 428



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           + ++  +   G  +E + I+ ++     + N      ++ +L K    E+A  +  + +S
Sbjct: 159 AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS 218

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              T +    NI +  +   N++E A      +   G +PC  ++  +   Y ++ +  K
Sbjct: 219 -HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIK 277

Query: 403 VLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYN 459
           V E   +  A GS     P+    T   + L  Q + + A  +   ++ +G    +  YN
Sbjct: 278 VYEMLSEMEANGSP----PNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYN 333

Query: 460 SLLRTYAKAGKM 471
            L+ T A+AG++
Sbjct: 334 CLIHTLARAGRL 345


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 183/430 (42%), Gaps = 11/430 (2%)

Query: 72  YELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           Y  + +VR + +LK +  A E   WME   +D+ +V+  Y V +  + K   +S A    
Sbjct: 226 YTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVT--YNVLIHGLCKGDRVSEAVEVK 283

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
            +L  K    D  T   L+  + + ++      LM++M E GF       + +++     
Sbjct: 284 RSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQ 343

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G++D   +++ ++ +    P++  YN  + +     D + AE  +  +    + P+ I+Y
Sbjct: 344 GKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITY 403

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L   + +    + A +    M +    +   AY+SL++     G       ++ +M +
Sbjct: 404 SILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTN 463

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              +     +T +IS   K  + +KA  +Y++      T +      L++   + N++  
Sbjct: 464 KGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAE 523

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A   ++ LV + IKP   T+ +L  GY + G+++K  E  +      +  VPD       
Sbjct: 524 ASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDM--HQKGLVPDTYTYRPL 581

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
            + L   G +  A+  +  L        E+ Y++LL  Y + G++   L     M +  +
Sbjct: 582 ISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641

Query: 485 QMDAETQKVL 494
            MD     VL
Sbjct: 642 NMDLVCHAVL 651



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 150/357 (42%), Gaps = 7/357 (1%)

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           K   LS+AE+ F  + +K   P   T ++L+  Y ++ +  +A  L  KM + G      
Sbjct: 447 KFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVY 506

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            +  +++   S  ++ +  ++  EL ++   P  VTYN+ +         + A +   ++
Sbjct: 507 TFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDM 566

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  + PD  +Y  L S         KA   + ++ K+  + N + YS+LL  Y   G  
Sbjct: 567 HQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRL 626

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            E L    +M+     M+   +  +I   +K  + +   ++  +        D  +   +
Sbjct: 627 MEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSM 686

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  Y      + A   ++ +VT+   P   T+  L  G  K G+M++    FK+   +  
Sbjct: 687 IDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAA-- 744

Query: 416 KWVPDHRLITAAY-NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
             VP + +    + + L ++G++  A  L   +      +T  +N ++R + K G+ 
Sbjct: 745 -NVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRF 800



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/419 (17%), Positives = 161/419 (38%), Gaps = 47/419 (11%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           K  + G T + Y    ++  L    +   A E+ + + ++  IK     Y V ++   + 
Sbjct: 495 KMIDNGITPNVYTFTALISGLCSTNKMAEASELFDEL-VERKIKPTEVTYNVLIEGYCRD 553

Query: 121 RGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
             +  A    E++  K   PDT +   L+       + ++A+  ++ + +       + Y
Sbjct: 554 GKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCY 613

Query: 179 NHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           + +L+ Y   G+L + +    + +++  + D+V + + +     Q D++T      ++  
Sbjct: 614 SALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHD 673

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
             + PD + Y+++   Y K    +KA      M    C  N V Y++L++     G  D 
Sbjct: 674 QGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDR 733

Query: 298 VLRIWKKMMSLFAKMNDAEYTC----------------------------------VISS 323
              ++K+M +     N   Y C                                  +I  
Sbjct: 734 AGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRG 793

Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
             KLG F +A  +  E        D    + L+  Y     +  +   ++ ++ +G++P 
Sbjct: 794 FCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPD 853

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              + LL +G    G+++K  E     +   R  +PD++        L+++G I  A H
Sbjct: 854 LVAYNLLIYGCCVNGELDKAFELRDDMLR--RGIIPDNKY-------LQKKGTIFEATH 903



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 136/332 (40%), Gaps = 8/332 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQMLQELK 202
           +AL++S  +     +AE L   MS        + Y+ +++ +  +G+LD  +    + ++
Sbjct: 369 NALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQ 428

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
                 V  YN  +       D   AE  F+E+    ++P   ++++L S Y K    +K
Sbjct: 429 DGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQK 488

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A     +M       N   +++L+S   +     E   ++ +++    K  +  Y  +I 
Sbjct: 489 AFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              + G+ +KA  + ++        D      L++   +  ++  A+ F + L  + +K 
Sbjct: 549 GYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKL 608

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
               +  L  GY ++G++ + L    + I  G     V    LI  A  + + +   D  
Sbjct: 609 NEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFD-- 666

Query: 441 EHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             LL  + + G      IY S++ TY+K G  
Sbjct: 667 --LLKDMHDQGLRPDNVIYTSMIDTYSKEGSF 696


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 176/405 (43%), Gaps = 52/405 (12%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           VSGD  ++ +LI   R L   S A + F  L      PD  +   +++ + + K   EA 
Sbjct: 225 VSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREAR 284

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAAC 219
            L+++M     +   + Y+ +LN+++ N +  +   ++ E+K+   P D+ T N+ +   
Sbjct: 285 FLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVY 344

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL-------------------- 259
              +  + A++ F  ++K  I+P+ +SY+T+  +Y + EL                    
Sbjct: 345 GQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNV 404

Query: 260 ---------------PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
                           EKA   +++M+KR    N + YS+++S++   G  D    +++K
Sbjct: 405 VTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQK 464

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           + S  A+++   Y  +I +  K G    A+ +  E +       PR   I + A   R  
Sbjct: 465 LRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNI--PRTTAITILAKAGR-- 520

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA--IGSVRKWVPDHR 422
           +E A   + +    G     + +E +   + +  + + VLE F+K   +G      P+  
Sbjct: 521 IEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGH----FPNSD 576

Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYA 466
           +I    N   +  D D A+ L + ++  G V T E++  +L  Y 
Sbjct: 577 VIALVLNAYGKLRDFDTADALYMEMQEEGCVFTDEVHFQMLSLYG 621



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/321 (18%), Positives = 138/321 (42%), Gaps = 42/321 (13%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P V  YN+ L         E A   F E+++  +  D  +YSTL + + K  + + A +
Sbjct: 156 TPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALS 215

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK---------------MMSLFA 310
            L++ME+     + V YS+L+ L   +    + + I+ +               M+++F 
Sbjct: 216 WLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFG 275

Query: 311 K-------------------MND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           K                   M D   Y+ +++  V+  +F +A ++  E + ++   D  
Sbjct: 276 KAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLT 335

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-K 409
             NI++  Y   + ++ A+  + R+   GI+P   ++  +   Y +     + +  F+  
Sbjct: 336 TCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLM 395

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKA 468
               +++ V  +  +   Y K  E    + A +L+  ++  G     I Y++++  + KA
Sbjct: 396 QRKEIKQNVVTYNTMIKIYGKTLEH---EKATNLVQDMQKRGIEPNAITYSTIISIWGKA 452

Query: 469 GKM--PLIIVERMQKDNVQMD 487
           GK+    ++ ++++    ++D
Sbjct: 453 GKLDRSAMLFQKLRSSGAEID 473


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD++    T S  ++   QN     A  ++  M + G       Y+ ++N   +NG+L++
Sbjct: 299 PDRV----TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEE 354

Query: 194 VPQML-QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
              ++ Q +     PD  T+N  + A  ++N  E A     EL    + P+  +++ L +
Sbjct: 355 AKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILIN 414

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K+  P  A    +EM+   C  + V Y+ L+    + G   + L + K+M       
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQ 474

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-NILLAAYINRNQLEMAESF 371
           +   Y  +I  L K    E+AE ++D+ + ++G G   +  N L+    N  +++ A   
Sbjct: 475 STVTYNTIIDGLCKRRRIEEAEEVFDQMD-VTGIGRNAITFNTLIDGLCNAERIDDAAEL 533

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            ++++++G++P   T+  +   Y K+G + K  +  +
Sbjct: 534 VDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQ 570



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 160/389 (41%), Gaps = 12/389 (3%)

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + + R   +A    E +      PD  T + L+  +V+      A  L  +MSE G 
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGC 262

Query: 172 LKCPLPYNHMLNLYISNGQL-DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
               +  N ++N Y   G++ D +  + QE+     PD VT++ ++         + A K
Sbjct: 263 SPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALK 322

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               + +   +PD  +YST+ +        E+A   + +M    C  +   +++L+    
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC 382

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                +E L + +++       N   +  +I++L K+G+   A  +++E +S   T D  
Sbjct: 383 TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK- 409
             NIL+    +  +L  A      +   G      T+  +  G  K+ ++E+  E F + 
Sbjct: 443 TYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM 502

Query: 410 -AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAK 467
              G  R  +  + LI    N       ID A  L+  + + G     + YNS+L  Y K
Sbjct: 503 DVTGIGRNAITFNTLIDGLCNAER----IDDAAELVDQMISEGLQPNNVTYNSILTHYCK 558

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
            G +     I++ M  +  ++D  T   L
Sbjct: 559 QGNISKAADILQTMTANGFEVDVVTYATL 587



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 123/296 (41%), Gaps = 4/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YNH+L +     ++  +     E+  +   PDVVT+N  + A        TA     E+ 
Sbjct: 164 YNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMS 223

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
              + PD  +++TL   +++    E A      M +  C    V  + L++ Y  +G   
Sbjct: 224 SCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVG 283

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           + L   ++ ++   + +   ++  ++ L + G  + A  +           D    + ++
Sbjct: 284 DALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVI 343

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
               N  +LE A+   N++V  G  P  TT+  L      + Q+E+ L+  ++   +V+ 
Sbjct: 344 NCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL--TVKG 401

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             P+        N L + GD   A  L   ++++G    E+ YN L+     +GK+
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKL 457



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 118/283 (41%), Gaps = 26/283 (9%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM--------ELQYDIKL----VS 107
           R+   +G + + Y  N ++  L K+     A+ + E M        E+ Y+I +     S
Sbjct: 395 RELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSS 454

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           G  A  LDL+ ++      ++             T + ++    + ++  EAE + ++M 
Sbjct: 455 GKLAKALDLLKEMEVSGCPQSTV-----------TYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKE 226
             G  +  + +N +++   +  ++D   +++ Q + +   P+ VTYN  L     Q +  
Sbjct: 504 VTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNIS 563

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A      +     + D ++Y+TL +   K    + A   L+ M  +  +    AY+ ++
Sbjct: 564 KAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVI 623

Query: 287 -SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
            SL+     +D  L ++++M  +    +   Y  V   L + G
Sbjct: 624 QSLFRGNNGRD-ALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 16/303 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + I  GQ +KV ++  E+    +  PD VTY+  ++A      +++A +   E+
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+ + SL+ K++    A +  +EM    CR +   Y+ L+      G  
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-- 353
           DE    + +M     K +      +I+ L K G  +    +++E   +S      +PN  
Sbjct: 317 DEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHC----IPNVV 371

Query: 354 ----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               I+ A + +++++    S++ R+   GI P   T+ +L  G+ K  ++EK +   ++
Sbjct: 372 TYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEE 431

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKA 468
                + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KA
Sbjct: 432 M--DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 489

Query: 469 GKM 471
           G++
Sbjct: 490 GRL 492



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 147/366 (40%), Gaps = 7/366 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L  K+  +  A + FE +      PD  T + L+    +  +  EA     +M 
Sbjct: 268 YTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G     +  N+M+N     G+LD   ++ +E+   +  P+VVTYN  + A      + 
Sbjct: 328 REGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRV 387

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           +   ++ E +K + I P   +YS L   + K    EKA   L+EM+++       AY SL
Sbjct: 388 SEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +         D    +++++       +   Y  +I  L K G  + A N++DE   +  
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGC 507

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           T +    N L++       L+ A +   ++   G  P   ++ ++  G  K G   + +E
Sbjct: 508 TPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAME 567

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
                  S  K  PD        + L   G  + A  L+  +   G     I Y+S+L  
Sbjct: 568 MLTNMKNSTIK--PDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625

Query: 465 YAKAGK 470
             K  +
Sbjct: 626 IGKVDQ 631



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 132/310 (42%), Gaps = 48/310 (15%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI-KLVSGDYAVHLDLISKIR 121
           + EG       +N ++  L K  R    L++ E M + + I  +V+ +  +     SK R
Sbjct: 327 QREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR 386

Query: 122 GLSSAENFFENLPDKMRG------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            +S   ++FE    +M+G      P T S L+  + +  +  +A  L+E+M E GF  CP
Sbjct: 387 -VSEVFSWFE----RMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP 441

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNT------------------------------ 205
             Y  +++      + D   ++ QELK+N                               
Sbjct: 442 AAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDE 501

Query: 206 ------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
                 +P+V  YN  ++  A     + A     ++++    PD  SY+ + +   K   
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
           P +A   L  M+  T + + V+Y+++LS  ++ G  +E   + K+M +L  + +   Y+ 
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621

Query: 320 VISSLVKLGE 329
           ++ ++ K+ +
Sbjct: 622 ILEAIGKVDQ 631



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/205 (18%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCV 320
           KA T   +++ R C+    AY+S++ +  + G  ++V  ++ +M +    + +   Y+ +
Sbjct: 177 KAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSAL 236

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  KLG  + A  + +E +        ++  ++++ +   + +  A S +  +     
Sbjct: 237 ISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYC 296

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  L  G  K G++++    + +      K  PD  ++    N L + G +D  
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCK--PDTVVMNNMINFLGKAGRLDDG 354

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRT 464
             L   +  +  +   + YN++++ 
Sbjct: 355 LKLFEEMGVSHCIPNVVTYNTIIKA 379


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 111/510 (21%), Positives = 203/510 (39%), Gaps = 96/510 (18%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI----KLVSGD 109
           +A +  R+  + G  +  Y L   V  L K  R++ AL + E  E + D     +++SG 
Sbjct: 250 TAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGL 309

Query: 110 YAVHL-----DLISKIRGLSSAENFFE-------NLPDKMRG----------PDTC---- 143
               L     D +S++R  S   N           L  +  G           + C    
Sbjct: 310 CEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSR 369

Query: 144 ---SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN--------------------- 179
              ++L+H+Y ++   + A  L++KM +CG     + YN                     
Sbjct: 370 RIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELA 429

Query: 180 -----HMLNLYI-------SN--------GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA 218
                 ML+ ++       SN        G+ +K   +++E+  K   PD  TY+  +  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
             + +  + A   F E+K   + PD  +Y+ L   + K+ L ++A     EM +  C  N
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY- 337
            V Y++L+  Y           +++ M+S     N   YT +I    K G+ EKA  IY 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 338 -----------DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIK 381
                      D +  I   G+ R PNI     L+      ++++ A    + +  +G +
Sbjct: 610 RMRGNADIPDVDMYFKID-DGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P +  ++ L  G+ K G++++    F K   S R + P+    ++  ++L +   +D A 
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM--SERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 442 HLLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
            +L   L N+   +  IY  ++    K GK
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 145/359 (40%), Gaps = 20/359 (5%)

Query: 107 SGDYAVHLDLISKIRG---LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           SG       + +++RG   +   + +F+     +R P+  T  AL+    +  K  EA  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L++ MS  G     + Y+ +++ +   G+LD+   +  ++ ++   P+V TY+  +    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K    + +    P+ I Y+ +     K+   ++A   +  ME++ C  N V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++  +   G  D+ L + ++M +     N   Y  +I+     G  + A  + DE 
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 341 ESISGTGDPRVPNILLAAY------INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           +    T  P+     +A Y       NR +  ++    + +      P    + +L   +
Sbjct: 838 KQ---TYWPK----HMAGYRKVIEGFNR-EFIISLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            K G++E  LE  K+          D  L ++    L     +D A  L   +   G +
Sbjct: 890 CKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGI 948



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 15/240 (6%)

Query: 177 PYNHMLNLYISNGQLDKVP-QMLQELKKNTSPDVVT--YNLWLAACASQNDKETAEKAFL 233
           P  H L   +  G  D+VP Q L+E++ +   +++    N+ +  C        A +   
Sbjct: 163 PVYHALLEVLGCGGNDRVPEQFLREIR-DEDKEILGKLLNVLIRKCCRNGLWNVALEELG 221

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            LK     P  ++Y+ L  ++++ +  + A    +EM       +       + L    G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 294 YKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                   W++ ++L  K    ++   YT +IS L +   FE+A +      S S   + 
Sbjct: 282 R-------WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNV 334

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               ILL   + + QL   +   + ++T+G  P    +  L   Y + G      +  KK
Sbjct: 335 VTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  GQ  KV ++  E+  + +  PD +TY+  ++A      +++A +   E+
Sbjct: 197 YNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+ L +L+ K++    A +  +EM  + CR +   Y+ L+      G  
Sbjct: 257 KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-I 354
           DE    + +M     + +      +I+ L K G  + A  ++ E  ++         N I
Sbjct: 317 DEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI 376

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + A + ++++     S++ R+   GI P   T+ +L  G+ K  +MEK +   ++     
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM--DE 434

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KAG++
Sbjct: 435 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 144/364 (39%), Gaps = 7/364 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L  K+  +  A + FE +  +   PD  T + L+    +  +  EA     +M 
Sbjct: 268 YTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     +  N+M+N     G+LD   ++ QE+      P VVTYN  + A      + 
Sbjct: 328 REGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRA 387

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           +   ++ E +K++ I P   +YS L   + K    EKA   L+EM+++       AY SL
Sbjct: 388 SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +         D    +++++       +   Y  +I  L K G  + A N++DE   +  
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 507

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L++       L+ A S   R+   G  P   ++ ++  G  K G   + +E
Sbjct: 508 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 567

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
                  S  +  PD          L   G  + A  L+  +   G     I Y+S+L  
Sbjct: 568 MLSNMKQSTVR--PDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEA 625

Query: 465 YAKA 468
             K 
Sbjct: 626 IGKV 629



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 136/329 (41%), Gaps = 17/329 (5%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + Y+ +++ +   G+ D   Q+L E+K+N   P    Y + +      +D   A   F E
Sbjct: 231 MTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEE 290

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++     PD  +Y+ L     K    ++A     EM++  CR + V  +++++     G 
Sbjct: 291 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGR 350

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRV 351
            D+ ++++++M +L    +   Y  +I +L +     +A  +   +E +  +G       
Sbjct: 351 LDDAMKLFQEMGTLRCIPSVVTYNTIIKALFE--SKSRASEVPSWFERMKESGISPSSFT 408

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF---K 408
            +IL+  +   N++E A      +  KG  PC   +  L     K  + +   E F   K
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 468

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 467
           +  GS        R+       L + G +D A ++   +   G       YN+L+   A+
Sbjct: 469 ENCGS-----SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
            G +   L  + RMQ+     D  +  ++
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNII 552



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 128/304 (42%), Gaps = 40/304 (13%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIR 121
           + EG       +N ++  L K  R   A+++ + M  L+    +V+ +  +     SK R
Sbjct: 327 QREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSR 386

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
             S   ++FE + +    P   T S L+  + +  +  +A  L+E+M E GF  CP  Y 
Sbjct: 387 A-SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYC 445

Query: 180 HMLNLYISNGQLDKVPQMLQELKKNT---------------------------------- 205
            +++      + D   ++ QELK+N                                   
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 505

Query: 206 --SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
             +PDV  YN  ++  A     + A      +++    PD  SY+ + +   K   P +A
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 565

Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
              L  M++ T R + V+Y+++L   ++ G  +E  ++ ++M +L  + +   Y+ ++ +
Sbjct: 566 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEA 625

Query: 324 LVKL 327
           + K+
Sbjct: 626 IGKV 629



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCV 320
           KA     +++ R C+    AY+S++ +  + G   +V  ++ +M +      D   Y+ +
Sbjct: 177 KAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  KLG  + A  + +E +        ++  +L+  +   + +  A S +  +  +  
Sbjct: 237 ISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYC 296

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  L  G  K G++++    F +         PD  ++    N L + G +D A
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEM--QREGCRPDTVVMNNMINFLGKAGRLDDA 354

Query: 441 EHL---LVTLRNAGHVST--EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
             L   + TLR    V T   I  +L  + ++A ++P    ERM++  +   + T  +L
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWF-ERMKESGISPSSFTYSIL 412


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 62/451 (13%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
           LR L +    + + +W+  Q   +     Y   LD ++K      A   F+ +  +   P
Sbjct: 12  LRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPP 71

Query: 141 D--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           D  T S +L    +  +  +A+ L+ ++ E G     + Y+ +++      ++D   ++ 
Sbjct: 72  DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIF 131

Query: 199 QELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + +       PDVVT+N  L    S      A   F  + K   +P+ ISYSTL     K
Sbjct: 132 KTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCK 191

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A    +EM +++C  + VAY+S ++         E     +KM++  +K +   
Sbjct: 192 AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVA 251

Query: 317 YTCVISSLVKLGEFEKAEN----------IYDEW-----ESISGTGDP------------ 349
           ++ VI  L K G  E+A+N          + DE      E IS    P            
Sbjct: 252 FSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAV 311

Query: 350 ----RVP------------------------NILLAAYINRNQLEMAESFYNRLVTKGIK 381
               R+P                        NI++       QL+ A+   N +   G+ 
Sbjct: 312 CKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLS 371

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L  G  K G++++  +  ++   S     PD     +  N L + G +D A 
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEM--SKEGVFPDSFTDASILNALSKAGKVDYAL 429

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L T++  G     + YN+LL    KAG++
Sbjct: 430 SHLETMKARGSTPDLVTYNTLLDGLCKAGRI 460



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 7/264 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELK 202
           L+H+  ++K+  +   L ++M       CP     YN M++      QLD+  +++ E+ 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 203 K-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SPDVVTY+  +         + A     E+ K  + PD  + +++ +   K    +
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A + L+ M+ R    + V Y++LL      G  DE +    KM++     +   YT +I
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           ++L + G+   A  I+ E        D  + + LL   + RN LE  +     L T   K
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG-LARNGLE--DLALELLKTSLCK 543

Query: 382 PCYTTWELLTWGYLKKGQMEKVLE 405
           P +   +++  G  K G+ E   E
Sbjct: 544 PDFVMHKMVVDGLCKAGKAEDACE 567



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 35/265 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K + L  A+     + +    PD  T SAL+    +  K   A  L+E+MS
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           + G          +LN     G++D     L+ +K + ++PD+VTYN  L         +
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++   K  PD  SY+ + +   +      A    +EM KR    + V Y SLL
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 287 SLYTNMGYKDEVLRIWK-----------KMM--------------SLFAKMNDA------ 315
                 G +D  L + K           KM+               +  +M DA      
Sbjct: 522 DGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADA 581

Query: 316 -EYTCVISSLVKLGEFEKAENIYDE 339
             Y  V+  L KLG+ +KA  + D+
Sbjct: 582 FTYINVVRGLRKLGKVDKARQLVDD 606



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 6/266 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P++ TYN+ +         + A++   E+    + PD ++YS L     K+   ++A   
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L+EM K     +    +S+L+  +  G  D  L   + M +  +  +   Y  ++  L K
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  ++A     +  +   T D     I++ A     Q   A + +  +V +G+ P    
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G  + G  +  LE  K ++       PD  +     + L + G  + A  ++  
Sbjct: 517 YHSLLDGLARNGLEDLALELLKTSL-----CKPDFVMHKMVVDGLCKAGKAEDACEVVER 571

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAGKM 471
           + +AG  +    Y +++R   K GK+
Sbjct: 572 MADAGFPADAFTYINVVRGLRKLGKV 597



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/475 (18%), Positives = 176/475 (37%), Gaps = 71/475 (14%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
            ++ +  G+    +  + ++R L K      A E+   +  +  +KL    Y+V +D   
Sbjct: 61  FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLR-ESGVKLNVITYSVVIDGCC 119

Query: 119 KIRGLSSAENFFENL-------PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           K   +  A   F+ +       PD +    T ++LL      ++ +EA  L E M++ G 
Sbjct: 120 KASRVDDALEIFKTMSAGGGCVPDVV----TFNSLLKGLCSGERMSEAFVLFEYMAKAGC 175

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y+ +L+     G+LD+  ++ +E+ +K+  PD+V Y  ++      N    A  
Sbjct: 176 EPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACD 235

Query: 231 AFLELKKTKIDPDWISYSTLTSLYI-----------------KMELPEKAATTLKEMEKR 273
              ++       D +++ST+  +                   +  + ++A  T +EM  R
Sbjct: 236 CCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISR 295

Query: 274 T--------------------------------------CRKNRVAYSSLLSLYTNMGYK 295
                                                  C  N   Y+ ++         
Sbjct: 296 NHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQL 355

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           DE   +  +M +     +   Y+ ++  L KLG+ ++A ++ +E        D      +
Sbjct: 356 DEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASI 415

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           L A     +++ A S    +  +G  P   T+  L  G  K G++++ +    K + +  
Sbjct: 416 LNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA-- 473

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 469
           K  PD    T     L   G   GA  +   +   G +  T +Y+SLL   A+ G
Sbjct: 474 KCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 147/328 (44%), Gaps = 3/328 (0%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSA 145
           ++ AL + +W E     K  S  Y + +D++ K +     + F E +  DK+   +T + 
Sbjct: 165 WRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAK 224

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           ++  +    +  EA  + +++ E G  K     N +L+      ++++   +L +LK + 
Sbjct: 225 IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHI 284

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P+  T+N+++      N  E A     E+K     P  ISY+T+   Y +     K   
Sbjct: 285 TPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYE 344

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L EME      N + Y++++S        +E LR+  +M     K +   Y C+I +L 
Sbjct: 345 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 404

Query: 326 KLGEFEKAENIYD-EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC 383
           + G  E+AE ++  E   +  + +    N ++A Y + ++ + A      + +  +  P 
Sbjct: 405 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPD 464

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAI 411
             T++ L     K+G + +V +  K+ +
Sbjct: 465 VHTYQPLLRSCFKRGDVVEVGKLLKEMV 492



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           + ++  +   G  +E + I+ ++     + N      ++ +L K    E+A  +  + +S
Sbjct: 223 AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS 282

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              T +    NI +  +   N++E A      +   G +PC  ++  +   Y ++ +  K
Sbjct: 283 -HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIK 341

Query: 403 VLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYN 459
           V E   +  A GS     P+    T   + L  Q + + A  +   ++ +G    +  YN
Sbjct: 342 VYEMLSEMEANGSP----PNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYN 397

Query: 460 SLLRTYAKAGKM 471
            L+ T A+AG++
Sbjct: 398 CLIHTLARAGRL 409


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 19/293 (6%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           D+VTYN  L+ACA +   + AE  F  + +  I PD  +YS L   + K+   EK +  L
Sbjct: 9   DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELL 68

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
           KEME      +  +Y+ LL  +   G   E + ++++M       N A Y+ +++   + 
Sbjct: 69  KEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRH 128

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           G ++   +++ E +  +   +    NIL+  +      +   + ++ +V + ++P   T+
Sbjct: 129 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETY 188

Query: 388 ELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443
           E L +   K G  E     +L   +K +      VP  +  T     +E  G     E  
Sbjct: 189 EGLIFACGKGGLHEDAKKILLHMNEKGV------VPSSKAYTGV---IEAYGQAALYEEA 239

Query: 444 LVTLRNAGHVST----EIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAET 490
           LV       V +    E YNSL++ +AK G  K    I+ +M +  V  + +T
Sbjct: 240 LVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDT 292



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 1/258 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + LL +  +     EAE +   M+E G L     Y++++  +    +L+KV ++L+E+
Sbjct: 12  TYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEM 71

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +   S PD+ +YN+ L A A     + A   F +++     P+  +YS L +LY +    
Sbjct: 72  ESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRY 131

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +       EM+      N   Y+ L++++   GY  EV+ ++  M+    + N   Y  +
Sbjct: 132 DDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGL 191

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  K G  E A+ I             +    ++ AY      E A   +N +   G 
Sbjct: 192 IFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGS 251

Query: 381 KPCYTTWELLTWGYLKKG 398
           KP   T+  L   + K G
Sbjct: 252 KPTVETYNSLIQMFAKGG 269



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 150/396 (37%), Gaps = 48/396 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y+  ++   K+  L       + +      PD  S   LL ++ Q+    EA  +  +M 
Sbjct: 48  YSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQ 107

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------- 202
             G +     Y+ +LNLY  +G+ D V  +  E+K                         
Sbjct: 108 GAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFK 167

Query: 203 -----------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                      +N  P++ TY   + AC      E A+K  L + +  + P   +Y+ + 
Sbjct: 168 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVI 227

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y +  L E+A      M +   +     Y+SL+ ++   G   E   I  KM      
Sbjct: 228 EAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVA 287

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   +  VI +  + G+FE+A   Y E E      D +    +L+ Y     +E +E  
Sbjct: 288 RNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQ 347

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEK----VLECFKKAIGSVRKWVPDHRLITAA 427
           +  +   GI P    + ++   Y K  + +     + E F   + ++ + +   ++I   
Sbjct: 348 FGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIG--QMIRGD 405

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
           Y   ++  +    E++   L++ G  +    YN+LL
Sbjct: 406 Y---DDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLL 438


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 159/392 (40%), Gaps = 37/392 (9%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   +L+   ++  +A A  L  KM E       + Y+ +++    +G LD    +  E+
Sbjct: 211 TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM 270

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K    DVV Y+  +    +    +   K   E+    I P+ +++S L  +++K    
Sbjct: 271 EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKL 330

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A     EM  R    + + YSSL+  +       E  ++   M+S   + N   Y+ +
Sbjct: 331 LEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSIL 390

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+S  K    +    ++ E  S     D    N L+  +    +L +A+  +  +V++G+
Sbjct: 391 INSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKK--------AIG-------------------- 412
            P   T+ +L  G    G+++K LE F+K         IG                    
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 413 -----SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY- 465
                SV+   PD          L ++G +  A+ L   ++  G   ++  YN L+R + 
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHL 570

Query: 466 AKAGKMPLI-IVERMQKDNVQMDAETQKVLKI 496
             +G +  + ++E M+      DA T K++ +
Sbjct: 571 GGSGVISSVELIEEMKMRGFAADASTIKMVVV 602



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 149/326 (45%), Gaps = 10/326 (3%)

Query: 90  ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALL 147
           AL++   ME +  IK     Y++ +D + K   L  A + F  +  K    D    S+++
Sbjct: 228 ALDLFRKME-ERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286

Query: 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTS 206
                + +  +   ++ +M     +   + ++ ++++++  G+L +  ++  E+  +  +
Sbjct: 287 GGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIA 346

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           PD +TY+  +     +N    A +    +     +P+ ++YS L + Y K +  +     
Sbjct: 347 PDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRL 406

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
             E+  +    + V Y++L+  +   G  +    ++++M+S     +   Y  ++  L  
Sbjct: 407 FCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCD 466

Query: 327 LGEFEKAENIYDEWES---ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
            GE +KA  I+++ +    I G G   + NI++    N ++++ A S +  L  KG+KP 
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIG---IYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPD 523

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKK 409
             T+ ++  G  KKG + +    F+K
Sbjct: 524 VLTYNVMIGGLCKKGSLSEADMLFRK 549



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 182/424 (42%), Gaps = 27/424 (6%)

Query: 73  ELNRIVRELRKLKRYKHALEVCEWMELQ------YDIKLVSGDYAVHLDLISKIRGLSSA 126
           + +++   + + K Y   L  C+ M+L       Y + ++   +     L+     +  A
Sbjct: 71  DFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRA 130

Query: 127 ENF-FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185
             F FE  P+ +    T S L++ +    + +EA AL+++M E  +    +  N ++N  
Sbjct: 131 LKFGFE--PNTI----TFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGL 184

Query: 186 ISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G++ +   ++  + K     + +TY   L       +   A   F ++++  I    
Sbjct: 185 CLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASV 244

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           + YS +     K    + A +   EME +  + + VAYSS++    N G  D+  ++ ++
Sbjct: 245 VQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLRE 304

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+      N   ++ +I   VK G+  +A+ +Y+E  +     D    + L+  +   N+
Sbjct: 305 MIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENR 364

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           L  A    + +V+KG +P   T+ +L   Y K  +++  +  F +   S +  V D    
Sbjct: 365 LGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI--SSKGLVAD---- 418

Query: 425 TAAYNKLE----EQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PLIIVE 477
           T  YN L     + G ++ A+ L   + + G   S   Y  LL      G++   L I E
Sbjct: 419 TVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFE 478

Query: 478 RMQK 481
           +MQK
Sbjct: 479 KMQK 482


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 199/510 (39%), Gaps = 96/510 (18%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI----KLVSGD 109
           +A +  R+  + G  +  Y L   V  L K  R++ AL + E  E + D     +++SG 
Sbjct: 250 TAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGL 309

Query: 110 YAVHL-----DLISKIRGLSSAENFFE-------NLPDKMRG----------PDTC---- 143
               L     D +S++R  S   N           L  +  G           + C    
Sbjct: 310 CEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSR 369

Query: 144 ---SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN------------ 188
              ++L+H+Y ++   + A  L++KM +CG     + YN ++     N            
Sbjct: 370 RIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELA 429

Query: 189 -----------------------------GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAA 218
                                        G+ +K   +++E+  K   PD  TY+  +  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
             + +  + A   F E+K   + PD  +Y+ L   + K+ L ++A     EM +  C  N
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY- 337
            V Y++L+  Y           +++ M+S     N   YT +I    K G+ EKA  IY 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 338 -----------DEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIK 381
                      D +  I   G+ R PNI     L+      ++++ A    + +  +G +
Sbjct: 610 RMRGNADIPDVDMYFKID-DGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P +  ++ L  G+ K G++++    F K   S R + P+    ++  ++L +   +D A 
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKM--SERGYGPNVYTYSSLIDRLFKDKRLDLAL 726

Query: 442 HLLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
            +L   L N+   +  IY  ++    K GK
Sbjct: 727 KVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 145/359 (40%), Gaps = 20/359 (5%)

Query: 107 SGDYAVHLDLISKIRG---LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           SG       + +++RG   +   + +F+     +R P+  T  AL+    +  K  EA  
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           L++ MS  G     + Y+ +++ +   G+LD+   +  ++ ++   P+V TY+  +    
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K    + +    P+ I Y+ +     K+   ++A   +  ME++ C  N V
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVV 777

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++  +   G  D+ L + ++M +     N   Y  +I+     G  + A  + DE 
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 341 ESISGTGDPRVPNILLAAY------INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
           +    T  P+     +A Y       NR +  ++    + +      P    + +L   +
Sbjct: 838 KQ---TYWPK----HMAGYRKVIEGFNR-EFIISLGLLDEIAENVAVPIIPAYRILIDSF 889

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
            K G++E  LE  K+          D  L ++    L     +D A  L   +   G +
Sbjct: 890 CKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGI 948



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 15/240 (6%)

Query: 177 PYNHMLNLYISNGQLDKVP-QMLQELKKNTSPDVVT--YNLWLAACASQNDKETAEKAFL 233
           P  H L   +  G  D+VP Q L+E++ +   +++    N+ +  C        A +   
Sbjct: 163 PVYHALLEVLGCGGNDRVPEQFLREIR-DEDKEILGKLLNVLIRKCCRNGLWNVALEELG 221

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            LK     P  ++Y+ L  ++++ +  + A    +EM       +       + L    G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 294 YKDEVLRIWKKMMSLFAK----MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                   W++ ++L  K    ++   YT +IS L +   FE+A +      S S   + 
Sbjct: 282 R-------WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNV 334

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               ILL   + + QL   +   + ++T+G  P    +  L   Y + G      +  KK
Sbjct: 335 VTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKK 394


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 165/382 (43%), Gaps = 14/382 (3%)

Query: 125 SAENFFENLPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---- 177
           +A + F  LP  +    G  + +ALL ++V+ ++ ++A+A    +S   F +   P    
Sbjct: 101 AALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQT 160

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +L    + G LD+   +   L++   +PD +TY+  +   A Q+  + A     E+ 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYK 295
           ++++ PD + Y+ L     K    EK      ++ K    R N   Y+ +L      G  
Sbjct: 221 RSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV  +W++M++   + +   Y  +I  L + G+ + A  +Y E        D  + N L
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  +    +++ A  F++     G++    T+ ++  G    G +++ +E +      V 
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLRN-LRTYNIMIKGLFDSGMVDEAIELWDLLEKDV- 398

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--P 472
             +PD        + L + G  + A  +    R +G  +    Y+S++      G++   
Sbjct: 399 ACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDA 458

Query: 473 LIIVERMQKDNVQMDAETQKVL 494
           + + E+M KD  + ++     L
Sbjct: 459 VKVYEKMDKDGCKPNSHIYNAL 480



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 161/405 (39%), Gaps = 17/405 (4%)

Query: 58  TMRKW----KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDY 110
            MR W    K+ G   +    N ++  L K  R+K   EV E M    LQ D+      Y
Sbjct: 247 VMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVIT----Y 302

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSE 168
            + +  + +   +  A   +  +       D    ++L+  + Q  +  EA    +    
Sbjct: 303 GILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGF 362

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKE 226
            G L+    YN M+     +G +D+  ++   L+K+ +  PD VT+   +          
Sbjct: 363 AG-LRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFAN 421

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E + +    D  SYS++ +    +     A    ++M+K  C+ N   Y++L+
Sbjct: 422 KAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALI 481

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S +  +    + +RI+ KM           Y  +I  L K  ++++A ++  E      T
Sbjct: 482 SGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT 541

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D      L+    +  +++ A S + +++ KG+K       +L  G    G++++ L  
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           F   +   +   P+        + L E G ID A  L  ++   G
Sbjct: 602 FSD-MKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDG 645



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 123/301 (40%), Gaps = 39/301 (12%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PDT +   L+H   QN  + +A  + E+    G       Y+ M+N   + G+L    ++
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +++ K+   P+   YN  ++          A + + ++      P  I+Y+TL     K
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCK 521

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            E  ++A++  +EM +     +   Y SL+    +    D+ L IWK+++    K++   
Sbjct: 522 AEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMM 581

Query: 317 YTCVISSLVKLGEFEKAENIYDE---------------------------------WESI 343
           +  +I  L   G+ ++A +++ +                                 W SI
Sbjct: 582 HNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSI 641

Query: 344 SGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +  G +P +   N  +    + +++       + ++++GI P   TW +L    +K G +
Sbjct: 642 TEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701

Query: 401 E 401
           +
Sbjct: 702 Q 702


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 62/451 (13%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
           LR L +    + + +W+  Q   +     Y   LD ++K      A   F+ +  +   P
Sbjct: 12  LRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPP 71

Query: 141 D--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           D  T S +L    +  +  +A+ L+ ++ E G     + Y+ +++      ++D   ++ 
Sbjct: 72  DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIF 131

Query: 199 QELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + +       PDVVT+N  L    S      A   F  + K   +P+ ISYSTL     K
Sbjct: 132 KTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCK 191

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               ++A    +EM +++C  + VAY+S ++         E     +KM++  +K +   
Sbjct: 192 AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVA 251

Query: 317 YTCVISSLVKLGEFEKAEN----------IYDEW-----ESISGTGDP------------ 349
           ++ VI  L K G  E+A+N          + DE      E IS    P            
Sbjct: 252 FSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAV 311

Query: 350 ----RVP------------------------NILLAAYINRNQLEMAESFYNRLVTKGIK 381
               R+P                        NI++       QL+ A+   N +   G+ 
Sbjct: 312 CKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLS 371

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  L  G  K G++++  +  ++   S     PD     +  N L + G +D A 
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEM--SKEGVFPDSFTDASILNALSKAGKVDYAL 429

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L T++  G     + YN+LL    KAG++
Sbjct: 430 SHLETMKARGSTPDLVTYNTLLDGLCKAGRI 460



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 9/303 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELK 202
           L+H+  ++K+  +   L ++M       CP     YN M++      QLD+  +++ E+ 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 203 K-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
               SPDVVTY+  +         + A     E+ K  + PD  + +++ +   K    +
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A + L+ M+ R    + V Y++LL      G  DE +    KM++     +   YT +I
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           ++L + G+   A  I+ E        D  + + LL   + RN LE  +     L T   K
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG-LARNGLE--DLALELLKTSLCK 543

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P +   +++  G  K G+ E   E  ++   +   +  D     +  + L + G +D A 
Sbjct: 544 PDFVMHKMVLDGLCKAGKAEDACEVVERMADA--GFPADAFTYISVVSGLRKLGKVDKAR 601

Query: 442 HLL 444
            L+
Sbjct: 602 QLV 604



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 35/265 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D + K + L  A+     + +    PD  T SAL+    +  K   A  L+E+MS
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           + G          +LN     G++D     L+ +K + ++PD+VTYN  L         +
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRID 461

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++   K  PD  SY+ + +   +      A    +EM KR    + V Y SLL
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 287 SLYTNMGYKDEVLRIWK-----------KMM--------------SLFAKMNDA------ 315
                 G +D  L + K           KM+               +  +M DA      
Sbjct: 522 DGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADA 581

Query: 316 -EYTCVISSLVKLGEFEKAENIYDE 339
             Y  V+S L KLG+ +KA  + D+
Sbjct: 582 FTYISVVSGLRKLGKVDKARQLVDD 606



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 6/266 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P++ TYN+ +         + A++   E+    + PD ++YS L     K+   ++A   
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L+EM K     +    +S+L+  +  G  D  L   + M +  +  +   Y  ++  L K
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
            G  ++A     +  +   T D     I++ A     Q   A + +  +V +G+ P    
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G  + G  +  LE  K ++       PD  +     + L + G  + A  ++  
Sbjct: 517 YHSLLDGLARNGLEDLALELLKTSL-----CKPDFVMHKMVLDGLCKAGKAEDACEVVER 571

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAGKM 471
           + +AG  +    Y S++    K GK+
Sbjct: 572 MADAGFPADAFTYISVVSGLRKLGKV 597


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 96/490 (19%), Positives = 199/490 (40%), Gaps = 53/490 (10%)

Query: 52  KRSAAITMRKWKEEG--HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD 109
           KR A +T  K +  G   +VH Y  N ++R     +  + A+   E ME++  I   +  
Sbjct: 139 KRGARVTFEKMRAAGIDSSVHAY--NNLIRAYIMAQNLQGAVSCVEEMEIE-GIFPNAAT 195

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           ++  +        + +AE +F+    +    +    S+++H+Y +      AEAL+  M 
Sbjct: 196 FSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADME 255

Query: 168 ECG--------------FLKC------------------------PLPYNHMLNLYISNG 189
           E G              + +C                         + Y  ++NLY   G
Sbjct: 256 EQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLG 315

Query: 190 QLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           ++ K  +  +E+K +  + +  TY++ +       D   A   F ++ +  I+PDW++Y+
Sbjct: 316 KMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYN 375

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
            L   + K     +A   L  M+ R C      Y +++  +   G      +   +M   
Sbjct: 376 ILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLA 435

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             + N   Y  ++ +LV+LG+ ++A ++ DE E      + R    L+  + +  ++ +A
Sbjct: 436 GCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLA 495

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAA 427
                R+     KP   ++  L     K G+M+  +   ++   +    VP ++ +    
Sbjct: 496 FKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFA---GVPMNNYIFNTL 552

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNV 484
            +   ++GD+  A  ++  +R  G       Y S +    KAG M      +E M++ ++
Sbjct: 553 LDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDL 612

Query: 485 QMDAETQKVL 494
           Q + +T  +L
Sbjct: 613 QPNLQTYTIL 622



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 145/369 (39%), Gaps = 44/369 (11%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           L+H Y +      A    EKM   G       YN+++  YI    L      ++E++ + 
Sbjct: 129 LIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEG 188

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
             P+  T++  ++   S  + E AEK F        + +   YS++   Y K    E+A 
Sbjct: 189 IFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAE 248

Query: 265 TTLKEMEKRT-----------------CR---------------------KNRVAYSSLL 286
             + +ME++                  C                         V Y  L+
Sbjct: 249 ALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLI 308

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           +LYT +G   + L   K+M +    +N   Y+ ++   V+LG+F  A +++++       
Sbjct: 309 NLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIE 368

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NILL A+    Q+  A     R+ T+G  P   T+  +  G++K G +    + 
Sbjct: 369 PDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKT 428

Query: 407 FKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRT 464
             +  +   R   P+        + L + G ID A  ++  +  AG   +   Y +L++ 
Sbjct: 429 VSEMKLAGCR---PNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQG 485

Query: 465 YAKAGKMPL 473
           +A  G++ L
Sbjct: 486 FASIGEIGL 494



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 146/346 (42%), Gaps = 10/346 (2%)

Query: 83  KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD- 141
           KL +   ALE C+ M+ Q  I L    Y++ +D   ++   ++A + FE++ +    PD 
Sbjct: 313 KLGKMMKALEFCKEMKAQ-GITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDW 371

Query: 142 -TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
            T + LL ++ ++++   A  L+ +M   G       Y  +++ ++  G +    + + E
Sbjct: 372 VTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSE 431

Query: 201 LK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K     P+  TYN+ +         + A     E++   + P++ SY+TL   +  +  
Sbjct: 432 MKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGE 491

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
              A   LK + + T +   ++Y+SLL      G     + + ++M      MN+  +  
Sbjct: 492 IGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNT 551

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++    + G+  +A  I  +      T D       + A      ++ A      +  + 
Sbjct: 552 LLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQD 611

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRL 423
           ++P   T+ +L  G+      EK L C+   KA G     +PD  L
Sbjct: 612 LQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAG----LIPDKPL 653



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 94/220 (42%), Gaps = 36/220 (16%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + ++H+ VQ  +   A +++++M   G       Y  ++  + S G++    + L+ +
Sbjct: 443 TYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRV 502

Query: 202 KKNTS-PDVVTYNLWLAACASQNDKETA-----EKAFL---------------------- 233
            + T  P +++Y   L AC      + A     E AF                       
Sbjct: 503 NEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDM 562

Query: 234 --------ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
                   ++++    PD  SY++  +   K    +KA  T++EM+++  + N   Y+ L
Sbjct: 563 WEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTIL 622

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
           +  +T++ + ++ L  + +M +     +   Y C+++SL+
Sbjct: 623 IHGWTSVSHPEKALICYDEMKAAGLIPDKPLYYCIVTSLL 662



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 303 KKMMSLFAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +K+++ F +++ A   +Y  +I    K G+   A   +++  +          N L+ AY
Sbjct: 109 RKVVNAFKRIDKAVERDYALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAY 168

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
           I    L+ A S    +  +GI P   T+  +  GY   G +E   + F++++     W  
Sbjct: 169 IMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVS--ENWNH 226

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAK 467
           +  + ++  +   + G+++ AE L+  +   G  +T  +YN L+  YA+
Sbjct: 227 NVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYAR 275


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 147/328 (44%), Gaps = 3/328 (0%)

Query: 87  YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSA 145
           ++ AL + +W E     K  S  Y + +D++ K +     + F E +  DK+   +T + 
Sbjct: 101 WRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAK 160

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           ++  +    +  EA  + +++ E G  K     N +L+      ++++   +L +LK + 
Sbjct: 161 IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHI 220

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           +P+  T+N+++      N  E A     E+K     P  ISY+T+   Y +     K   
Sbjct: 221 TPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYE 280

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            L EME      N + Y++++S        +E LR+  +M     K +   Y C+I +L 
Sbjct: 281 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 340

Query: 326 KLGEFEKAENIYD-EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC 383
           + G  E+AE ++  E   +  + +    N ++A Y + ++ + A      + +  +  P 
Sbjct: 341 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPD 400

Query: 384 YTTWELLTWGYLKKGQMEKVLECFKKAI 411
             T++ L     K+G + +V +  K+ +
Sbjct: 401 VHTYQPLLRSCFKRGDVVEVGKLLKEMV 428



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           + ++  +   G  +E + I+ ++     + N      ++ +L K    E+A  +  + +S
Sbjct: 159 AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS 218

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
              T +    NI +  +   N++E A      +   G +PC  ++  +   Y ++ +  K
Sbjct: 219 -HITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIK 277

Query: 403 VLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYN 459
           V E   +  A GS     P+    T   + L  Q + + A  +   ++ +G    +  YN
Sbjct: 278 VYEMLSEMEANGSP----PNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYN 333

Query: 460 SLLRTYAKAGKM 471
            L+ T A+AG++
Sbjct: 334 CLIHTLARAGRL 345


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 143/342 (41%), Gaps = 35/342 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K +    AE  F+ + D    P  DT + L+H Y+   K  E   ++EKMS
Sbjct: 210 YTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMS 269

Query: 168 ECGF------------LKCPL----------------PYNHMLNLYISN----GQLDKVP 195
             G               C L                P +H+ N++ S     G +DK  
Sbjct: 270 ARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAM 329

Query: 196 QMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +  +++++  SP+VV Y   + A       + AE  F ++    + P+ + +++L    
Sbjct: 330 DIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGL 389

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
             ++  E+A   + EM  +    N V +++L+    N+G   E  R+   M  +  + + 
Sbjct: 390 CTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 449

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             YT +IS     G  ++AE ++D   SI  +      N LL  Y + ++++ A   +  
Sbjct: 450 FSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 509

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
           ++ KG+ P   T+  +  G  +  +  +  E +   I S  K
Sbjct: 510 MLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 551



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 81/426 (19%), Positives = 173/426 (40%), Gaps = 55/426 (12%)

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
           L++ +  LS   +F + + +    PD    +    +Y +     +A  +  KM + G   
Sbjct: 283 LLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 342

Query: 174 CPLPYNHMLNLYISNGQLD----KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229
             + Y  +++     G++D    K  QM+ E     +P++V +N  +    + +  E AE
Sbjct: 343 NVVNYGALIDALCKLGRVDDAEVKFNQMINE---GVTPNIVVFNSLVYGLCTVDKWERAE 399

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +   E+    I P+ + ++TL      +    +    +  ME    R +  +Y+ L+S Y
Sbjct: 400 ELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGY 459

Query: 290 TNMGYKDEVLRIWKKMMSL------------------FAKMNDA---------------- 315
              G  DE  +++  M+S+                   ++++DA                
Sbjct: 460 CLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGV 519

Query: 316 -EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  ++  L +   F +A+ +Y    +     D    NI+L      N ++ A   +  
Sbjct: 520 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 579

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKL 431
           L +KG++    T+ ++    LK G+ E  ++ F  A       VP+   +RL+      L
Sbjct: 580 LCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF--AAIPANGLVPNVVTYRLVA---ENL 634

Query: 432 EEQGDIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKAGKMPL--IIVERMQKDNVQMDA 488
            E+G ++  + L   + +N    ++++ N+L+R     G +      + ++ + N  ++A
Sbjct: 635 IEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEA 694

Query: 489 ETQKVL 494
            T  +L
Sbjct: 695 STTSLL 700



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 103/278 (37%), Gaps = 43/278 (15%)

Query: 196 QMLQELKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +M++E     +P+  TY++ +   C     K +     L LK      D +    L  L 
Sbjct: 85  RMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC 144

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-- 312
               + E     L+ M +  C  + V+YS LL  + N    +E L + + M +   +   
Sbjct: 145 DGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCP 204

Query: 313 -NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            N   YT VI  L K   F++AE ++ +                                
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQ-------------------------------- 232

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
              ++  G+KP   T+  L  GYL  G+ ++V++  +K   S R   PD     +  N L
Sbjct: 233 ---MIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKM--SARGLKPDCYTYGSLLNYL 287

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
               ++     L+V   N       I+N     YAK G
Sbjct: 288 CALSEMHSFLDLMV--ENGLSPDHHIFNIFFSAYAKCG 323


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/448 (20%), Positives = 189/448 (42%), Gaps = 9/448 (2%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           + A   ++K +E G+       N ++    K  RYK ALE+ + M  +  I+  +  Y +
Sbjct: 185 KKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSK-GIEADACTYNM 243

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
            +D + K    +      + +  +M  P+  T +++++ +V+  K   A  + ++MS   
Sbjct: 244 LVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLN 303

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAE 229
            L   + YN +++ +  +G  ++   +L+ ++     P+ V+Y+  L         E ++
Sbjct: 304 LLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSK 363

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
                ++   +    I+Y+ +     +  L  ++   L +M K     + V +S L++ +
Sbjct: 364 SILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGF 423

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             +G    V  I  KM       N   YT +I +  K G+  +A  +Y     I    + 
Sbjct: 424 CRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANC 483

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            + N+L+++     ++ +AE F++ +   G  P   T++ +  GY   G   K    F +
Sbjct: 484 FICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDE 543

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKA 468
            I +     P H         L   G    A+ LL  L      V T  YN++L    K+
Sbjct: 544 MIKAGHH--PSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKS 601

Query: 469 GKM--PLIIVERMQKDNVQMDAETQKVL 494
           G +   + + + M + NV  D+ T  ++
Sbjct: 602 GMLTDAVALFDEMVQRNVLPDSYTYAII 629



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 8/332 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQ 199
           TC+ LL   V+ +K        ++M       CP    +N ++N+    G+L K   +L+
Sbjct: 135 TCNMLLGKLVKERKVGAVWLFFKEM--LARRVCPDVSTFNILINVLCVEGKLKKAGYLLK 192

Query: 200 ELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           +++++   P VVTYN  L     +   + A +   ++    I+ D  +Y+ L     K  
Sbjct: 193 KMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNN 252

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
              K    LK+M KR    N + Y+S+++ +   G      RI+++M  L    N   Y 
Sbjct: 253 RSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYN 312

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I      G FE+A  I +  E+     +    + LL       + E+++S   R+   
Sbjct: 313 ALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMN 372

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+      +  +  G  + G + + ++   K +      VPD    +   N     G I 
Sbjct: 373 GMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKD--GVVPDVVTFSVLINGFCRVGKIK 430

Query: 439 GAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 469
             + ++  +  AG   ++ IY +L+  Y K G
Sbjct: 431 NVKEIICKMYKAGLAPNSIIYTTLIYNYCKTG 462



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 151/365 (41%), Gaps = 38/365 (10%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
           SALL+   ++ K   +++++E+M   G +   + Y  M++    NG L++  ++L + LK
Sbjct: 347 SALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLK 406

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT----------- 251
               PDVVT+++ +         +  ++   ++ K  + P+ I Y+TL            
Sbjct: 407 DGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVE 466

Query: 252 --SLYIKME-----------------LPEKAATTLKE-----MEKRTCRKNRVAYSSLLS 287
              +Y+ M                  L +     + E     M K     N + +  +++
Sbjct: 467 AFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIIN 526

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
            Y N G   +   ++ +M+      +   Y  ++ +L + G+F++A+ + D+   I    
Sbjct: 527 GYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAV 586

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D    N +L        L  A + ++ +V + + P   T+ ++  G +++G+M   L  +
Sbjct: 587 DTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFY 646

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
              +G      P+  + T   + L   G    A +    +   G  +  I  N +L  Y+
Sbjct: 647 GNLLGK-GAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYS 705

Query: 467 KAGKM 471
           + GKM
Sbjct: 706 RMGKM 710



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 38/297 (12%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
           C+ L+ S  ++ K   AE     MS+ G +   + ++ ++N Y ++G   K   M  E+ 
Sbjct: 486 CNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMI 545

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K    P   TY   L A       + A++   +L       D ++Y+T+     K  +  
Sbjct: 546 KAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLT 605

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-------------- 307
            A     EM +R    +   Y+ + +     G     L  +  ++               
Sbjct: 606 DAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTF 665

Query: 308 ---LF--AKMNDAEYTC-----------------VISSLVKLGEFEKAENIYDE-WESIS 344
              LF   +   A Y C                 +++   ++G+  KA +I+   W  I+
Sbjct: 666 VDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGIT 725

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
            +      NILL  Y  +  L    + YN ++  GI P   T   L  G+ K   ++
Sbjct: 726 ISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLD 782



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/324 (18%), Positives = 131/324 (40%), Gaps = 6/324 (1%)

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
           P  ++ ++ +Y+  G +    +  + +  +  +P V T N+ L     +         F 
Sbjct: 98  PSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFK 157

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+   ++ PD  +++ L ++       +KA   LK+ME+     + V Y+++L+ Y   G
Sbjct: 158 EMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKG 217

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                L +  +M S   + +   Y  ++  L K     K   +  +      + +    N
Sbjct: 218 RYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYN 277

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            ++  ++   ++  A   +  +    + P   T+  L  G+   G  E+ L   +    +
Sbjct: 278 SIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEAT 337

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM- 471
             K  P+    +A  N L      + ++ +L  +R  G +   I Y +++    + G + 
Sbjct: 338 GPK--PNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLN 395

Query: 472 -PLIIVERMQKDNVQMDAETQKVL 494
             + ++++M KD V  D  T  VL
Sbjct: 396 ESVKLLDKMLKDGVVPDVVTFSVL 419



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 86/198 (43%), Gaps = 1/198 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQMLQE 200
           T + LLH Y + K  ++   L   M   G     L  + ++  +  +  LD  +  + + 
Sbjct: 732 TYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKM 791

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L    + D  T+N+ +      ++   A      +    I PD  ++ ++ S+  ++   
Sbjct: 792 LLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTV 851

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +++   L EM +R C  +R  Y +L++    MG+     ++  +M +L     D   + +
Sbjct: 852 QESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESAL 911

Query: 321 ISSLVKLGEFEKAENIYD 338
           +  L K G+ E+A+ + D
Sbjct: 912 VRGLAKCGKVEEAKLVLD 929


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 167/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSAKTSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    YN +    +  G+     
Sbjct: 76  LEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L   G+  +A +I  E  +      D  +   L+++  N   L+ A     
Sbjct: 256 ITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKL 431
            ++   +      + +L   + K GQ ++ ++   K I       P     L  +AYN +
Sbjct: 316 AMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPM 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEG 417



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 148/336 (44%), Gaps = 16/336 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
           +AL  + ++  +   A+    KM   G       +N M+  +  +G+++   +  +++K 
Sbjct: 119 NALFKAILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKS 178

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SPDVVTYN  +         E AEK F+E+K   I+P  ++Y+TL   Y+ ++  + 
Sbjct: 179 REISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDD 238

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMNDAEYTCVI 321
           A   ++EM+    + N + YS+LL    N G   E   I K+MM  + A  +++ +  +I
Sbjct: 239 ALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLI 298

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI- 380
           SS    G  + A ++      +S   +     +L+  +    Q + A    ++L+ K I 
Sbjct: 299 SSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDII 358

Query: 381 -KPCYTTWELLTWGY-------LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
            +P  +T  L    Y          GQ  K     ++ +   +  V D   +        
Sbjct: 359 LRP-QSTLHLEPSAYNPMIEYLCNNGQAAKAEALVRQLL---KLGVQDPTALNTLIRGHS 414

Query: 433 EQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAK 467
           ++G  D A  LL + LR         Y+SL+++Y K
Sbjct: 415 QEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLK 450



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 13/289 (4%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++ Y + KK  EAE    +M         + Y  
Sbjct: 166 VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+S  Q+D   ++++E+K     P+ +TY+  L    +      A     E+    
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKY 285

Query: 240 IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           + P D   +  L S        + AA  LK M + +       Y  L+  +   G  D+ 
Sbjct: 286 LAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQA 345

Query: 299 LRIWKKMM--------SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           +++  K++             +  + Y  +I  L   G+  KAE +  +   + G  DP 
Sbjct: 346 VKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAEALVRQLLKL-GVQDPT 404

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             N L+  +      + A      ++ + +    + ++ L   YLKK +
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNE 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           +  +I S  K G  +++  ++ + E +      +  N L  A + R +  MA+ ++N+++
Sbjct: 83  WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKML 142

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           ++GI+P   T+ ++ WG+   G++E     F+      R+  PD        N       
Sbjct: 143 SEGIEPARHTFNVMIWGFFLSGKVETANRFFEDM--KSREISPDVVTYNTMINGYYRVKK 200

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKV 493
           ++ AE   V ++      T + Y +L++ Y    ++   L +VE M+   ++ +A T   
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYST 260

Query: 494 L 494
           L
Sbjct: 261 L 261


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 151/327 (46%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREAR 99

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +   + Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 100 SLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 219

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 220 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQK 279

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 280 LRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA----GSGR 335

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 336 IEEATWVFRQAIDAGEVKDITVFERMI 362



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 7/202 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 221 TYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKL 280

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D V Y   + A         A++   ELK+    PD I   T   +       
Sbjct: 281 RSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGSGRI 336

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC- 319
           E+A    ++       K+   +  ++ L++       V+ ++ KM  L     D+  T  
Sbjct: 337 EEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYSNVVEVFDKMRGL-GYFPDSNVTAL 395

Query: 320 VISSLVKLGEFEKAENIYDEWE 341
           V+++  KL EF+KA N+Y E +
Sbjct: 396 VLNAYGKLHEFDKANNVYIEMQ 417


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN ++ + +  GQ +KV ++  E+  + +  PD +TY+  +++       ++A + F E+
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   + P    Y+TL  +Y K+   EKA    +EM++  C      Y+ L+      G  
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-- 353
           DE    +K M+      +      +++ L K+G  E+  N++ E      T  P V +  
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT--PTVVSYN 377

Query: 354 -ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            ++ A + ++  +    S+++++    + P   T+ +L  GY K  ++EK L   ++   
Sbjct: 378 TVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM-- 435

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
             + + P      +  N L +    + A+ L   L+ N G+VS+ +Y  +++ + K GK+
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 149/363 (41%), Gaps = 17/363 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-------AEAEAL 162
           Y   L +  K+  +  A + FE +  K  G   CS  +++Y +  K         EA   
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEM--KRAG---CSPTVYTYTELIKGLGKAGRVDEAYGF 325

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC-A 220
            + M   G     +  N+++N+    G+++++  +  E+     +P VV+YN  + A   
Sbjct: 326 YKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFE 385

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
           S+         F ++K   + P   +YS L   Y K    EKA   L+EM+++       
Sbjct: 386 SKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPA 445

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           AY SL++        +    ++K++   F  ++   Y  +I    K G+  +A ++++E 
Sbjct: 446 AYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           ++     D    N L++  +    +  A S   ++   G +    +  ++  G+ + G  
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
            + +E F+    S  K  PD              G  + A  ++  +++ G     I Y+
Sbjct: 566 RRAIEMFETIKHSGIK--PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623

Query: 460 SLL 462
           S+L
Sbjct: 624 SIL 626



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 38/225 (16%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGD-YAVHLDLISKIRGLSSAENFFENLPD 135
           ++  L K KRY+ A E+  + EL+ +   VS   YAV +    K   LS A + F  + +
Sbjct: 450 LINALGKAKRYEAADEL--FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKN 507

Query: 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           +  GPD  +                                 YN +++  +  G +++  
Sbjct: 508 QGSGPDVYA---------------------------------YNALMSGMVKAGMINEAN 534

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+++++N    D+ ++N+ L   A       A + F  +K + I PD ++Y+TL   +
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEV 298
               + E+AA  ++EM+ +    + + YSS+L    N+ + KD+V
Sbjct: 595 AHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDV 639



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 3/192 (1%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L     + ++  KA +   + + R C+     Y+S++ +    G  ++V  ++ +M +
Sbjct: 166 SELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCN 225

Query: 308 LFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 D   Y+ +ISS  KLG  + A  ++DE +        ++   LL  Y    ++E
Sbjct: 226 EGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVE 285

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A   +  +   G  P   T+  L  G  K G++++    +K  +       PD   +  
Sbjct: 286 KALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD--GLTPDVVFLNN 343

Query: 427 AYNKLEEQGDID 438
             N L + G ++
Sbjct: 344 LMNILGKVGRVE 355


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 162/397 (40%), Gaps = 23/397 (5%)

Query: 120 IRGLSS------AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRGL S      AE+    + +    P+  T + L+  Y +   + +A  L + M   G 
Sbjct: 224 IRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGL 283

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + +  +++     G++     +   + K + +P++  YN  + A     D   A  
Sbjct: 284 VPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMA 343

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            FLEL++ ++ PD  +YS L      +   E+A    ++M K     N V Y+SL+    
Sbjct: 344 LFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCC 403

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  D+ L I  +M     + N   ++ +I    K+   + A  IY E    S + D  
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVV 463

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKK 409
               ++  +     ++ A   Y+ ++  GI P CYT   LL  G  K G++   LE F +
Sbjct: 464 TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLD-GLCKDGKISDALELFTE 522

Query: 410 AI-----------GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-I 457
            I           G  +  + +H   TA  + L + G    A  L   +R  G    E I
Sbjct: 523 KIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVI 582

Query: 458 YNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
           Y  +LR   +   + +++   M K  V  ++    +L
Sbjct: 583 YVVMLRGLFQVKYILMMLHADMLKFGVIPNSAVHVIL 619



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 167/405 (41%), Gaps = 8/405 (1%)

Query: 71  KYELNRIVRELRKLKRYKHALEVCEWMELQY--DIKLVSGDYAVHLDLISKIRGLSSAEN 128
           +Y LN +V+ L K  +  HA ++  + EL      K     Y   + ++ K+  +  A +
Sbjct: 78  RYLLNDLVQNLVKSHKPYHACQL-AFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALS 136

Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
            +  +   +     C+ LL+  V+  +      + E+M   G     + +  +++     
Sbjct: 137 MYHKVGAALT-IQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQ 195

Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G L +  +M  E++ K   P V+ Y + +    S N  E AE     +++  + P+  +Y
Sbjct: 196 GDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTY 255

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +TL   Y K+   ++A    ++M       + V +  L+      G       ++  M+ 
Sbjct: 256 NTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK 315

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N A Y  +I +  K+G+  +A  ++ E E    + D    +IL+    + ++ E 
Sbjct: 316 FSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEE 375

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE-CFKKAIGSVRKWVPDHRLITA 426
           A + + ++  +GI     T+  L  G  K+G+M+K LE C +     V   V     +  
Sbjct: 376 AGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLID 435

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            Y K+       G    +V    +  V T  Y +++  + K G M
Sbjct: 436 GYCKIRNLQAAMGIYSEMVIKSLSPDVVT--YTAMIDGHCKYGSM 478


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/454 (20%), Positives = 175/454 (38%), Gaps = 40/454 (8%)

Query: 39  DTLGRRLLSLVYAKRSAAITMRKW---KEEGHTVHK-YELNRIVRELRKLKRYKHALEV- 93
           +T+GR L   V      ++   +W      G ++H  +  N ++R L K +R+  A ++ 
Sbjct: 35  NTVGRVLQ--VIKDVDVSLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIF 92

Query: 94  --------CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TC 143
                   C+   + Y+  L+ G          K   +  A      + ++   PD  T 
Sbjct: 93  RDELLGQHCDTNHITYN-TLIGG--------FCKAGDMERAFQLLAEMKERGHSPDVVTH 143

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN----GQLDKVPQMLQ 199
           S+++ +       + A     +  EC       P + + N+ +       QL +  QM++
Sbjct: 144 SSIVQALCNTGNLSRAMQYFRESVECA------PDSVLFNILVHGLCKANQLSEARQMIE 197

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E+ ++   PDVVTYN  +         E A +    + K K+ P+ ++Y+TL   Y K  
Sbjct: 198 EMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTG 257

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   ++ M +     + V ++SL+S +      D+   +   M       N   Y 
Sbjct: 258 CTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYN 317

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +IS L   G   +A  +  E +      D    N L+  +    Q+E A    N +V +
Sbjct: 318 VLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVER 377

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G+ P   ++  L    LK  + ++          +    +P+     +    L     +D
Sbjct: 378 GVIPDGISYCTLAVALLKSERFDEAFALLDNMFDA--GAIPNLFTFNSLMEGLCCSRRLD 435

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            A HLL  +R  G   +   Y  L+    KAG++
Sbjct: 436 EARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 139/313 (44%), Gaps = 5/313 (1%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG-DYAVHLDLISKIRGLSSAENFFEN 132
            N ++R + +    K A ++ E+M+L+  +   +  +  VH  L+    G +        
Sbjct: 156 FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRME 215

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
               + G  T  A++   V+  +  +A  + E+M   G  +    Y+ ++  +  +G++D
Sbjct: 216 REGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEID 275

Query: 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++ + +  +   P+VV Y+  +   A+      AE  F E+  +K  P+ I+Y ++ 
Sbjct: 276 CALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMI 335

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K+    +A +  +EM    C  N V+YS L++   N+G   + + +WK M+     
Sbjct: 336 QGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCA 395

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAE 369
            +   YT +I  L   G  +    ++ +  + SG  DP V   N+LL   +    L  A 
Sbjct: 396 PDTIAYTSMIKGLCVSGMVDGGLRLFYDMLA-SGHADPDVISYNVLLDGLLLAKDLPRAM 454

Query: 370 SFYNRLVTKGIKP 382
              NR++ +G  P
Sbjct: 455 DLLNRMLDQGCDP 467



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 22/371 (5%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PDK     T S ++ +     +  +A AL+ +M   G +     +N +L   +  G +  
Sbjct: 117 PDKF----TYSTVVSALADAGRVDDAVALVHEMVADGVVAAE-AFNPVLRAMLRAGDVKG 171

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
             ++ + ++ K   P   TYN+ +           A      +++  + P  ++Y  +  
Sbjct: 172 AAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVD 231

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
             ++    + A    +EME+    +N   YS++++ +   G  D  L++W+ M++   + 
Sbjct: 232 GLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRP 291

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEM 367
           N   Y+ +I  L   G+  +AE ++ E            PNI     ++  Y        
Sbjct: 292 NVVLYSAMIGGLANFGKMTEAELLFREM-----IDSKCAPNIITYGSMIQGYFKIGDTSR 346

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A S +  ++  G  P   ++ +L  G    G+++  +  +K  +   R   PD    T+ 
Sbjct: 347 ALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLD--RGCAPDTIAYTSM 404

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKMP--LIIVERMQKDN 483
              L   G +DG   L   +  +GH   ++  YN LL     A  +P  + ++ RM    
Sbjct: 405 IKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQG 464

Query: 484 VQMDAETQKVL 494
              D  T  + 
Sbjct: 465 CDPDTVTCNIF 475


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 9/275 (3%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L+    P   TY L L A  +      AE    E+++  I P+   Y+      +K    
Sbjct: 4   LEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCT 63

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA    + M++  CR N   ++ ++++Y         ++++ +M S+  K N   YT +
Sbjct: 64  EKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTAL 123

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +++  + G  EKAE +++E +      D    N L+ AY      + A   ++ +   G 
Sbjct: 124 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGC 183

Query: 381 KPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +P   ++ +L   Y + G     E V E  K+    +   +  H L+ AA+ +    G+ 
Sbjct: 184 EPDRASYNILVDAYGRAGLHEDAEAVFEELKQR--GMSPTMKSHMLLLAAHAR---SGNA 238

Query: 438 DGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM 471
              E ++  L  +G    T   N++L  YA+AG++
Sbjct: 239 TRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRL 273



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 122/330 (36%), Gaps = 38/330 (11%)

Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           DT + LL +Y        AE ++ +M E G       YN  L+  +     +K  ++ Q 
Sbjct: 13  DTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 72

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K+     +  T+ L +          ++ K F E+K     P+  +Y+ L + + +  L
Sbjct: 73  MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL 132

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            EKA    +EM++     +  AY++L+  Y+  G       I+  M  +  + + A Y  
Sbjct: 133 CEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNI 192

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           ++ +  + G  E AE +++E                                   L  +G
Sbjct: 193 LVDAYGRAGLHEDAEAVFEE-----------------------------------LKQRG 217

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           + P   +  LL   + + G   +  E   +   S     PD   + A  N     G +D 
Sbjct: 218 MSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKS--GLTPDTFALNAMLNAYARAGRLDD 275

Query: 440 AEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E L   +   G      YN  +  Y +AG
Sbjct: 276 MERLFAAMERRGDADVGTYNVAVNAYGRAG 305



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 98/247 (39%), Gaps = 3/247 (1%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
           + ++ GH    Y  N ++    +    + A E+   M+     +     Y + +D   + 
Sbjct: 142 EMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQ-HMGCEPDRASYNILVDAYGRA 200

Query: 121 RGLSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
                AE  FE L  +   P   S   LL ++ ++  +   E +M ++ + G        
Sbjct: 201 GLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFAL 260

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N MLN Y   G+LD + ++   +++    DV TYN+ + A          E AF  +   
Sbjct: 261 NAMLNAYARAGRLDDMERLFAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAAR 320

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            +  D ++++     Y + +   +    ++EM    C  +      LL+  ++    ++V
Sbjct: 321 GLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQV 380

Query: 299 LRIWKKM 305
             I + M
Sbjct: 381 TAIVRSM 387


>gi|302798915|ref|XP_002981217.1| hypothetical protein SELMODRAFT_420704 [Selaginella moellendorffii]
 gi|300151271|gb|EFJ17918.1| hypothetical protein SELMODRAFT_420704 [Selaginella moellendorffii]
          Length = 541

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/456 (20%), Positives = 188/456 (41%), Gaps = 56/456 (12%)

Query: 53  RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112
           R     ++ W+ EG+ V +  + +++  L     Y   +++  W+ ++   +L   D+ V
Sbjct: 123 RDIVAALKDWQSEGNLVTRDVIYKLIIRLHARMFYFQGMKLMNWVIVEKPFQLTDFDHLV 182

Query: 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSA-LLHSYVQNKKSAEAEALMEKMSECGF 171
            +D  ++   +      F  + DK    +TC   LL ++    +   A  ++++M E   
Sbjct: 183 RMDFHTRELKVDKVLTCFNRIQDKT---ETCYVLLLQAFATAHRKERALDVLKQMKELVL 239

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTY-NLWLA--ACASQNDKE 226
           +     YN ++ +Y+  G +D+  +M  EL  K N +PD  TY NL  +  A    + ++
Sbjct: 240 ITNSYSYNLVIAMYLRMGLIDEAKEMFAELKDKSNVAPDAFTYLNLLKSRDALGMDDLED 299

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
           T E+ FL++ K     +W                                       +L+
Sbjct: 300 TIEEFFLDVDKIPTGFEW--------------------------------------RNLI 321

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
            LY  MG K +V R+W++   +   M ++ +   I S    GE ++ E I  + E+ +  
Sbjct: 322 RLYGAMGKKKDVERLWREQKRVAEYMPESYFLAAIESFGMNGEMKQFEEICKQLEAQNQK 381

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
              R    +L  Y     +  AE    ++     K  +  +  L  GY+ + Q  K  E 
Sbjct: 382 LSERQCFTMLKVYCMNGLMNDAERTAKKMEELRYKLGFKGYHYLVSGYVNRHQFVKATEK 441

Query: 407 FKKA--IGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEI--YN 459
           F +A   G  + +   + L       LE    + +++ AE ++  +    H   +I  +N
Sbjct: 442 FSEAEEKGLAKGF--KNPLFVTVLTLLEAYAGKKELEKAEEMVEKVLKTKHYPYDIRLFN 499

Query: 460 SLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
           +LL+ Y +  K    I  R+++  ++ +  T K+LK
Sbjct: 500 ALLKVYRRCQKPAWGIENRIKEAKLEPNETTHKLLK 535


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 152/365 (41%), Gaps = 6/365 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D ++K   L+ A N F+ L      P T   ++L+H         +A  L   M+
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLAACASQNDKE 226
             G    P+ YN M++     G L++   +++++ ++   PDVVTYN  +      +  E
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+++    P+  S++T+     +    ++A     EME +    +  +Y  L+
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  +E  +++++M+      +   Y  VI  +      ++A  ++    S    
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                 NIL+ A+  R +L+ A     R+   G  P   T+  L  G     +++     
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY 465
            +  +   R+  P         + L + G I  A  +L  + ++G     + YN+L+  +
Sbjct: 313 LEDMV--KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 466 AKAGK 470
            +AG+
Sbjct: 371 CRAGQ 375



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 153/374 (40%), Gaps = 22/374 (5%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           ++K  E+GH       N ++  L K  R + AL +   ME             + L L  
Sbjct: 103 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 162

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           + + +  A   F  +  K   PD+ S   L+    +  K  EA  L ++M + G     +
Sbjct: 163 QSK-IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAV 221

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            YN +++       LD+  ++ + ++ K   P   T+N+ + A      +   ++AF  L
Sbjct: 222 TYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA---HCKRGKLDEAFRLL 278

Query: 236 KKTKID---PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
           K+   D   PD ++YSTL S    +   + A   L++M KR C+   V  ++L+      
Sbjct: 279 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 338

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G   E   +   M+S     +   Y  ++    + G+ E+A  +  +            P
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM-----VARGLAP 393

Query: 353 NI-----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           N+     L++     N+L  A   + ++ + G  P   T+  L  G+   GQ++  L+ F
Sbjct: 394 NVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLF 453

Query: 408 KKAIGSVRKWVPDH 421
            + + +     PDH
Sbjct: 454 GEMVCA--GISPDH 465



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 7/296 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D   K   L  A    + + D    PD  T S L+       +  +A  L+E M 
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           +       +  N +++     G++ +  ++L  +     SPDVVTYN  +         E
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A +   ++    + P+ ++Y+ L S   K     +A     +M+   C  N   Y++L+
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISG 345
             + + G  D  L+++ +M+      +   Y  + + L K G   +A  I  E  ES+  
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 497

Query: 346 T--GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
              GD  V    +   +   ++EMA  F   +V  G  P       L  G  K GQ
Sbjct: 498 EAWGD-EVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 7/229 (3%)

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M +R    +  +Y  L+      G  ++   +++K++      +   YT +I  L     
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
           F+ A  ++ +         P   N+++ A   R  LE A     +++  G  P   T+  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +  G  K  ++E+ L  F +         P+ R        L +Q  ID A  +   +  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEM--ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-E 177

Query: 450 AGHVSTE--IYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           A  +  +   Y  L+   AKAGK+     + +RM    +   A T  V+
Sbjct: 178 AKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVV 226


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 180/442 (40%), Gaps = 40/442 (9%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
           ++  E G  + K+ +    + L K  R+  AL + E  + + D  L +            
Sbjct: 64  KEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCT----------QM 113

Query: 120 IRGLSSAENFFENLP--DKMRG----PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           I GL  A  F E +    +MR     P+  +   LL  +++ K+    + ++  M + G 
Sbjct: 114 ISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGC 173

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKET--- 227
              P  +N +++ Y +        ++L+ +      P  V YN+++ +     +  +   
Sbjct: 174 NPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDL 233

Query: 228 ---AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              AEK + E+  +    + ++ +        M   + A   +K M  +    +   YS 
Sbjct: 234 LALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSK 293

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +++        ++   ++++M S+    +   YT +I S  K G  E+A + +DE  SI 
Sbjct: 294 VITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIG 353

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            + +      LL AY+   QL  A   +NR++  G  P   T+  L  G  K G+++K  
Sbjct: 354 CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKAC 413

Query: 405 ECFKKAIGSVRKWVPDHRL-----ITAAYNKLEEQGDIDG---------AEHLL-VTLRN 449
           E + K IG+      D         + A N +     IDG         A+ LL   L N
Sbjct: 414 EVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSN 473

Query: 450 AGHVSTEIYNSLLRTYAKAGKM 471
               +  IY++L+  + K GK+
Sbjct: 474 GCEPNHIIYDALIDGFCKVGKI 495



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 123/298 (41%), Gaps = 37/298 (12%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKK 203
           AL+  + +  K   A+ +  +MS+CG+L     Y  +++    + +LD   ++L Q ++ 
Sbjct: 484 ALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVES 543

Query: 204 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
           + +P+VVTY   +       + + A K    +++    P+ ++Y+ L     K    + +
Sbjct: 544 SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLS 603

Query: 264 ATTLKEMEKRTCRKNRVAYSSLL-------------SLYTNM----------GYKDEVLR 300
                +M  + C  N V Y  L+             SL + M          GY   V  
Sbjct: 604 LQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQG 663

Query: 301 IWKKMMSLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             KK ++    + + E          Y  +I +  K G  E+A  ++ E   +S + +  
Sbjct: 664 FSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNIT 723

Query: 351 VPNI---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             ++   L+ A    +QLE A   Y+ +  KG+ P  + +  L  G +K  +  + L+
Sbjct: 724 SKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQ 781



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 132/314 (42%), Gaps = 18/314 (5%)

Query: 107 SGDYAVHLDLISKIRGLS---SAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEA 161
           +G+     ++ +K+ G S    ++ +FE        P+  T  AL+    +  K  +A+ 
Sbjct: 406 AGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 465

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           L++ M   G     + Y+ +++ +   G++D   ++   + K    P V TY   + A  
Sbjct: 466 LLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMF 525

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A K   ++ ++   P+ ++Y+ +     ++   +KA   L  ME++ C  N V
Sbjct: 526 KDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVV 585

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++L+      G  D  L+++ +M +     N   Y  +I+     G  ++A ++  E 
Sbjct: 586 TYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 645

Query: 341 ESISGTGDPRVPNILLAAYINRNQ-----LEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           +    T  P+     L  Y +  Q        +      L + G  P    + LL   + 
Sbjct: 646 KQ---TYWPK----YLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFS 698

Query: 396 KKGQMEKVLECFKK 409
           K G++E+ LE  K+
Sbjct: 699 KAGRLEEALELHKE 712



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 39/269 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D   K+  + +A+  F  +      P   T ++L+ +  ++++   A  ++ +M 
Sbjct: 482 YDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMV 541

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
           E       + Y  M++     G+  K  ++L  ++ K  SP+VVTY   +         +
Sbjct: 542 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVD 601

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS-- 284
            + + F+++      P++++Y  L +      L ++A + L EM++    K    Y S  
Sbjct: 602 LSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVV 661

Query: 285 -------------------------------LLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
                                          L+  ++  G  +E L + K+MM L + +N
Sbjct: 662 QGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLN 721

Query: 314 DAE---YTCVISSLVKLGEFEKAENIYDE 339
                 YT +I +L    + EKA  +Y E
Sbjct: 722 ITSKDMYTSLIQALCLASQLEKAFELYSE 750


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 138/315 (43%), Gaps = 7/315 (2%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFL 233
             +N  +   ++ G L +   ML+ + ++ +P  +  +YN+ +A          A + F 
Sbjct: 28  FAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFD 87

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+ +  + P+ I+Y+T+   +IK    E       +M     + N + Y+ LLS     G
Sbjct: 88  EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAG 147

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E   +  +M S     +   Y+ +   L + G+ +   +++ ++     T      +
Sbjct: 148 RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS 207

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           ILL       ++ +AE     LV  G+ P    +  L  GY + G++E     F +    
Sbjct: 208 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM--K 265

Query: 414 VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP 472
            R   PDH    A  N L +   I  A+ LL+ +++ G + + E +N+L+  Y + G++ 
Sbjct: 266 SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE 325

Query: 473 --LIIVERMQKDNVQ 485
              I++  MQ++ ++
Sbjct: 326 KCFIVLSEMQENGLK 340



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 51/355 (14%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  TCS LL+   ++ K + AE +++ +   G +   + YN ++N Y   G+L       
Sbjct: 202 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL------- 254

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                                      E A   F ++K   I PD I+Y+ L +   K E
Sbjct: 255 ---------------------------EGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 287

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   L EM+          +++L+  Y   G  ++   +  +M     K N   Y 
Sbjct: 288 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 347

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++++  K G+  +A  I D+        + +V N ++ AY+     + A     ++ + 
Sbjct: 348 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 407

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA--YNKLEE--- 433
           GI P   T+ LL  G   + Q+ +  E            + +HRLI  A  YN L     
Sbjct: 408 GISPSIVTYNLLIKGLCNQSQISEAEEIINS--------LSNHRLIPDAVSYNTLISACC 459

Query: 434 -QGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI--IVERMQKDNV 484
            +G+ID A  L   +   G  ST   Y+ L+     AG++  +  + ++M ++NV
Sbjct: 460 YRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 514



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 1/197 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            ++++++ +N K  EA A+++ M     L     YN +++ Y+ +G  D+   +++++K 
Sbjct: 347 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 406

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N  SP +VTYNL +    +Q+    AE+    L   ++ PD +SY+TL S        +K
Sbjct: 407 NGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK 466

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M K   +     Y  L+S     G  +E+  +++KMM      ++A +  ++ 
Sbjct: 467 ALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVE 526

Query: 323 SLVKLGEFEKAENIYDE 339
           +  K G   KAE++  E
Sbjct: 527 AYSKYGNEIKAEDLRKE 543



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 152/368 (41%), Gaps = 20/368 (5%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
           +  +A  + ++M+E   L   + YN M++ +I  G L+   ++  ++      P+ +TYN
Sbjct: 78  RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 137

Query: 214 LWLAA-CASQNDKETAEKAFL-ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           + L+  C +    ET+  A L E+   K+ PD  +YS L     +    +   +   +  
Sbjct: 138 VLLSGLCRAGRMGETS--ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 195

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           K          S LL+     G       + + +++         Y  +I+   + GE E
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 255

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A + + + +S     D    N L+       ++  A+     +   G+ P   T+  L 
Sbjct: 256 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 315

Query: 392 WGYLKKGQMEKVLECF----KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             Y + GQ+EK   CF    +     ++  V  +  I  A+ K    G I  A  +L  +
Sbjct: 316 DAYGRTGQLEK---CFIVLSEMQENGLKPNVVSYGSIVNAFCK---NGKIPEAVAILDDM 369

Query: 448 RNAGHV-STEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL--KITSEMPV 502
            +   + + ++YN+++  Y + G      I+VE+M+ + +     T  +L   + ++  +
Sbjct: 370 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQI 429

Query: 503 SEVSSIFS 510
           SE   I +
Sbjct: 430 SEAEEIIN 437



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 106/253 (41%), Gaps = 3/253 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   +++A++    + D    P  +T + L+ +Y +  +  +   ++ +M 
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G     + Y  ++N +  NG++ +   +L ++  K+  P+   YN  + A       +
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++K   I P  ++Y+ L           +A   +  +       + V+Y++L+
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S     G  D+ L + ++M     K     Y  +IS L   G   + E +Y +    +  
Sbjct: 456 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 515

Query: 347 GDPRVPNILLAAY 359
               + NI++ AY
Sbjct: 516 PSNAIHNIMVEAY 528


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 40/384 (10%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A + F+N    +  PD  T S L++ + + +   +A  L+++M + G +     YN ++ 
Sbjct: 17  AYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIK 76

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL---------------------AACASQ 222
               NG++D      ++++++ +P V+TY + +                     A CA  
Sbjct: 77  GLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPN 136

Query: 223 --------------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268
                          + + A   F ++ +    PD  +Y+ L   Y K E P+  A  L+
Sbjct: 137 VVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQ 196

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM K  C  N + Y++L+      G   +   + + M+    K +   +  +I    K+G
Sbjct: 197 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVG 256

Query: 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 388
           + + A  ++          D    NI+++     N+++ A     R+   G  P   T+ 
Sbjct: 257 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 316

Query: 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL- 447
            +  G  K  Q+++  E ++  +     +  D    +   + L +   +D AE LL  + 
Sbjct: 317 SIVSGLCKASQVDEAYEVYE--VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREME 374

Query: 448 RNAGHVSTEIYNSLLRTYAKAGKM 471
           RN        Y  L+  + KA ++
Sbjct: 375 RNGSAPDVVAYTILIHGFCKADQL 398



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 121/284 (42%), Gaps = 3/284 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++   K+  +  A   F  + +    PD  T + L+  Y + ++  +   L+++M 
Sbjct: 140 YNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV 199

Query: 168 ECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226
           + G     + YN +++  + +G+ +D        L+++  P   T+NL +         +
Sbjct: 200 KYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLD 259

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A + F  +      PD  +Y+ + S   +    + A   L+ M +  C  + V Y+S++
Sbjct: 260 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 319

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S        DE   +++ + +    ++    + +I  L K    + AE +  E E     
Sbjct: 320 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 379

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            D     IL+  +   +QL+ + +F++ ++ KG  P   T+ ++
Sbjct: 380 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV 423



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 37/254 (14%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L K  +Y  A  + + M L+ D K     + + +D+  K+  L  A   F+ + 
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMM-LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           D+   PD  T + ++    +  +  +A  L+E+M+E G   CP                 
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG---CP----------------- 309

Query: 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
                         PDVVTYN  ++     +  + A + +  L+      D ++ STL  
Sbjct: 310 --------------PDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 355

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K    + A   L+EME+     + VAY+ L+  +      D+ L  + +M+      
Sbjct: 356 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 415

Query: 313 NDAEYTCVISSLVK 326
               Y+ VI  L K
Sbjct: 416 TVITYSIVIDKLCK 429


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 147/311 (47%), Gaps = 8/311 (2%)

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           P N ++  +   G ++++  + +++K+N   P + TYN  +    S    ++AE+ F  +
Sbjct: 189 PGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 248

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-SLYTNMGY 294
           +  +I PD ++Y+T+   Y K    +KA   L+ ME +    +++ Y +++ + Y +  +
Sbjct: 249 ESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDF 308

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
               + ++++M     ++    ++ VI  L K G+  +   +++         +  +  +
Sbjct: 309 S-SCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTV 367

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+  Y     +E A    +R++ +G  P   T+ ++  G  K G++E+ ++ F+      
Sbjct: 368 LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTC--RF 425

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM-- 471
                +    ++  + L + G +D AE L   +   G    +  YN+L+  + K GK+  
Sbjct: 426 NGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDE 485

Query: 472 PLIIVERMQKD 482
            L + +RM+++
Sbjct: 486 ALALFKRMEEE 496



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 12/249 (4%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAAC 219
           AL ++M E G    P  ++ ++      G+L++   + + + +K + P+V  Y + +   
Sbjct: 313 ALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGY 372

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
           A     E A +    +     +PD ++YS + +   K    E+A    +     TCR N 
Sbjct: 373 AKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQ-----TCRFNG 427

Query: 280 VA-----YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
           +A     YSSL+      G  DE  R++++M       +   Y  +I +  K G+ ++A 
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAL 487

Query: 335 NIYDEWESISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
            ++   E   G         IL++     ++ E A   ++ ++ KGI P       L+ G
Sbjct: 488 ALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTG 547

Query: 394 YLKKGQMEK 402
               G++ +
Sbjct: 548 LCLSGKVAR 556



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 16/208 (7%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P   S ++    +  K  E  A+ E M   G       Y  +++ Y   G ++   ++L 
Sbjct: 327 PHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLH 386

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +  +  +PDVVTY++ +         E A   F   +   +  + + YS+L     K  
Sbjct: 387 RMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAG 446

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-- 316
             ++A    +EM ++ C ++   Y++L+  +T  G  DE L       +LF +M + E  
Sbjct: 447 RVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAL-------ALFKRMEEEEGC 499

Query: 317 ------YTCVISSLVKLGEFEKAENIYD 338
                 YT +IS + K    E+A  ++D
Sbjct: 500 DQTVYTYTILISGMFKEHRNEEALKLWD 527


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 20/301 (6%)

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+ +K  Q+L+E+ +K   PD  TY   +         E +   F E+K+  ++PD  +Y
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + L   + K  L E+A +   EM    C  N V Y++LL  Y       +   I+ +M+ 
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVD 550

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-----------VPNI-- 354
                N   Y+ +I  L K GE +KA  +Y++    SG  +              PN+  
Sbjct: 551 AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVT 610

Query: 355 ---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
              L+       ++  A    + ++  G +P    ++ L  G+ K G+++   E F +  
Sbjct: 611 YGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT 670

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLRTYAKAGK 470
                ++P     T+  +++ + G +D A  +L  + N + + +   Y +++   +K G+
Sbjct: 671 KC--GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE 728

Query: 471 M 471
           +
Sbjct: 729 I 729



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 152/386 (39%), Gaps = 57/386 (14%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
           C+ ++   ++     EA + + +M     +   + Y  +L+ ++   Q     +++  + 
Sbjct: 274 CTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMM 333

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-LTSLYIKMELP 260
            +  +P+   +N  +    +  D   A K F  +      P +++Y+  + S+  + ELP
Sbjct: 334 TEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELP 393

Query: 261 EKAATTL-----KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-------- 307
                 L     +EM   +C  N+V  ++       +G  ++  +I K+MM         
Sbjct: 394 NAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTS 453

Query: 308 --------------------LFAKMNDA-------EYTCVISSLVKLGEFEKAENIYDEW 340
                               LF +M  A        YT +I S  K G  E+A + +DE 
Sbjct: 454 TYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEM 513

Query: 341 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
            S+  + +      LL AY+   QL  A   ++R+V     P   T+  L  G  K G++
Sbjct: 514 RSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEI 573

Query: 401 EKVLECFKKAIGSVRKWVPDHRL-----ITAAYNKLEEQGDIDG---------AEHLLVT 446
           +K  E ++K IG+      D         T A N +     IDG         A  LL  
Sbjct: 574 QKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDA 633

Query: 447 LRNAGHVSTEI-YNSLLRTYAKAGKM 471
           +  AG    +I Y++L+  + K GK+
Sbjct: 634 MLAAGCEPNQIVYDALIDGFCKIGKI 659



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 123/300 (41%), Gaps = 19/300 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A ++F+ +      P+  T +ALLH+Y+++K+  +A  +  +M 
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-----------------SPDVV 210
           +       + Y+ +++     G++ K  ++ ++L   +                 +P+VV
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVV 609

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +           A +    +     +P+ I Y  L   + K+   + A      M
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRM 669

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K     +   Y+SL+      G  D  +++  +M++     N   YT +I  L K+GE 
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEI 729

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           EKA N+    E    + +      L+       + + +   + ++ +KG  P Y T+ +L
Sbjct: 730 EKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVL 789



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 132/331 (39%), Gaps = 44/331 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K + +S A    + +      P+     AL+  + +  K   A+ +  +M+
Sbjct: 611 YGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT 670

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           +CG+L     Y  +++    +G+LD   ++L E L  + +P+VVTY   +   +   + E
Sbjct: 671 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIE 730

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A      +++    P+ ++Y+ L     K    + +    K+M  + C  N V Y  L+
Sbjct: 731 KALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI 790

Query: 287 SLYTNMGYKDEVLRIWKKM--------------------------MSLFAKMNDAE---- 316
           +     G  DE   +  +M                          + L  +M   E    
Sbjct: 791 NHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPI 850

Query: 317 ---YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI---LLAAYINRNQLEMAES 370
              Y  +I S  K G  E A  ++ E   +S + +     +   L+ A    +Q+E A +
Sbjct: 851 APVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFT 910

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
            Y  +  KGI P     +L+ +  L KG +E
Sbjct: 911 LYTEMTRKGIVP-----DLIVFVSLVKGLIE 936



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 10/213 (4%)

Query: 137 MRGPDTCS---------ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187
             G DTC+         AL+    + +K ++A  L++ M   G     + Y+ +++ +  
Sbjct: 596 FEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCK 655

Query: 188 NGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
            G++D   ++   + K    P V TY   +         + A K   E+     +P+ ++
Sbjct: 656 IGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVT 715

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
           Y+ +     K+   EKA   L  ME++ C  N V Y++L+      G  D  L+++K+M 
Sbjct: 716 YTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMN 775

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           S     N   Y  +I+     G  ++A  + DE
Sbjct: 776 SKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDE 808



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 118/321 (36%), Gaps = 23/321 (7%)

Query: 188 NGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           +G  D+  + L  LK     P  VTYN  +   AS    E   +   E+  +    D  +
Sbjct: 182 HGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRST 241

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
                    K+    + A  L  +EK     + V  + ++S        +E +    +M 
Sbjct: 242 IGYFAQALCKVG---RWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMR 298

Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 N   Y  ++S  +K  +F   + I +   +     +P + N L+  Y N     
Sbjct: 299 CNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYA 358

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---------EKVLECFKKAIGSVRKW 417
            A   +NR+ T G  P Y  + +       + ++         EKV E    A   + K 
Sbjct: 359 YAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNK- 417

Query: 418 VPDHRLITAAYNK-LEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PL 473
                + TA +++ L   G  + A  +L  +   G V  T  Y  ++    +A K+    
Sbjct: 418 -----VNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSF 472

Query: 474 IIVERMQKDNVQMDAETQKVL 494
           ++ + M++  V  D  T  +L
Sbjct: 473 LLFQEMKRAGVNPDVYTYTIL 493


>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
          Length = 427

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 114/255 (44%), Gaps = 24/255 (9%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK- 236
           ++H L +Y    Q+D +          T    +++N+ L+AC      +   + F E+  
Sbjct: 116 FDHALKIY---HQMDDL---------GTPRSAISFNVLLSACMHSKLYDRVAQLFDEIPV 163

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    PD +SY  L   Y +M LPE A    KEME++      VA++++L  +   G  D
Sbjct: 164 KYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGKSD 223

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPN 353
           E  R+W +M+S     +   Y   I ++    +  K E +    E +S  G   D    N
Sbjct: 224 EAERVWNEMVSRGCGPDVGAYNVKIMNI----QGSKPEGVKALIEEMSNAGLKPDTISYN 279

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
            L+  Y     ++ A+  Y  L T G  P   T+  L +   KKG+ E   + F++++ S
Sbjct: 280 YLMTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLIFYLCKKGRFETGYKVFRESV-S 338

Query: 414 VRKWVPDHRLITAAY 428
           V K +PD   IT  Y
Sbjct: 339 VHK-IPD--FITLKY 350



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 129/300 (43%), Gaps = 31/300 (10%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWME--------LQYDIKLVSGDYAVHLDLISKIRGLSS 125
           L+ I+R     + + HAL++   M+        + +++ L +    +H  L  ++  L  
Sbjct: 103 LSSIIRSYGVARMFDHALKIYHQMDDLGTPRSAISFNVLLSA---CMHSKLYDRVAQL-- 157

Query: 126 AENFFENLPDKMRG-PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182
               F+ +P K    PD  S   L+ SY +      A    ++M E G     + +  +L
Sbjct: 158 ----FDEIPVKYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTTIL 213

Query: 183 NLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLE-LKKTKI 240
           + +   G+ D+  ++  E+  +   PDV  YN+ +     Q  K    KA +E +    +
Sbjct: 214 HSFYKKGKSDEAERVWNEMVSRGCGPDVGAYNVKIMNI--QGSKPEGVKALIEEMSNAGL 271

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            PD ISY+ L + Y K +L ++A    ++++   C  N   + +L+      G  +   +
Sbjct: 272 KPDTISYNYLMTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLIFYLCKKGRFETGYK 331

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           ++++ +S+    +      ++  LVK   +  A+        +S T   + P  L+ A+I
Sbjct: 332 VFRESVSVHKIPDFITLKYLVEGLVKKSRWRDAKG-------MSRTVKKKFPPNLVKAWI 384


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 143/348 (41%), Gaps = 20/348 (5%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PDK     T S ++ +     +  +A AL+ +M   G +     +N +L   +  G + 
Sbjct: 311 VPDKF----TYSTVVSALADAGRVDDAVALVHEMVVDGVVAAEA-FNPVLGAMLRTGDVT 365

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
              ++   ++ K  +P   TYN+ L         + A      +++ ++ P  ++Y  + 
Sbjct: 366 GAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVV 425

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
              ++    E A   ++EM  +    N   +S +++ +  +G  D   R+W  M++   K
Sbjct: 426 DGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIK 485

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE-- 369
            N   Y+ +I  L + G+  +AE ++ E           VPNI+  + + R   ++ +  
Sbjct: 486 PNVVLYSAMIDGLARCGKMTEAELLFREMIEAKC-----VPNIMTYSSMVRGYFQIGDSS 540

Query: 370 ---SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
              SF+  ++  G  P   T+ +L  G    G+ +  +  +K  +G  R  VPD    T+
Sbjct: 541 QALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLG--RGCVPDTIAYTS 598

Query: 427 AYNKLEEQGDIDGAEHLLVTL--RNAGHVSTEIYNSLLRTYAKAGKMP 472
                   G +D    L   +  R   H     YN LL    +A  +P
Sbjct: 599 MIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLP 646



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 124 SSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
           S A +F+E++      P+  T S L++      +S +A  + + M   G +   + Y  M
Sbjct: 540 SQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSM 599

Query: 182 LNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +  +  +G +D   ++  ++  + +T PDV+ YN+ L       D   A     ++    
Sbjct: 600 IKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQA 659

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
            DPD ++ +T      ++E+ +K    L+ +  R C + R
Sbjct: 660 CDPDTVTCNTFLR---EIEVGQKGQEFLEGLVVRLCNRKR 696


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 14/311 (4%)

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQND 224
           M + GF    + YN +L+   + G++     + + + K   SPDVVTYN  L       +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            + A K F    K    PD ++Y+ L + + K +  ++A   L+ M       + V Y+S
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 285 LLSLYTNMGYKDEV-LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           L++     G  DE  + I  K  S     N   Y+ +IS L +  E          + S+
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFS----PNVITYSTLISGLCR--ELRGVSEALKLFGSV 174

Query: 344 SGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
              G +P VP  NIL+   +  +++  A   ++ LV  G++P   T+ +   G  K G++
Sbjct: 175 LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
           E  L   K      +  VPD     A  N L ++  +D AE LL  +   G     I +N
Sbjct: 235 EDALLMLKDM--DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFN 292

Query: 460 SLLRTYAKAGK 470
           +L+    +AGK
Sbjct: 293 TLICGQCRAGK 303



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 155/393 (39%), Gaps = 77/393 (19%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L    K+  L  A   F+    +   PD  T +AL++ + +  K  EA+ ++++M 
Sbjct: 48  YNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 107

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE--------------------------- 200
               +   + YN ++N    NG++D+   ++ +                           
Sbjct: 108 SENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEA 167

Query: 201 -------LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
                  LK+   P+V TYN+ +     ++    A + F  L K  ++PD I+Y+     
Sbjct: 168 LKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 227

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             K    E A   LK+M+++ C  + V++++                             
Sbjct: 228 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNA----------------------------- 258

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
                 VI+ L K    ++AE +    E+   + +    N L+       + + A + + 
Sbjct: 259 ------VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFK 312

Query: 374 RLVTKGIKPCYTTWELLTWGYLK---KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430
            ++ +G+KP   T+ +L  G  K   +G++++ +  F   I   R  VPD    +A  + 
Sbjct: 313 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGR--VPDVVTYSALIDG 370

Query: 431 LEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462
           L + G +D A  LL  +   G + +   YNSL+
Sbjct: 371 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 403



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 9/256 (3%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L K  R   A E+   + +++ ++  +  Y V +D + K   +  A    +++ 
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGL-VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 245

Query: 135 DKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +K   PD  S  A+++   + K+  EAE L+  M   G     + +N ++      G+  
Sbjct: 246 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 305

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWL-AACASQNDKETAEKAFL---ELKKTKIDPDWISY 247
           K     +E LK+   P VVTYN+ +   C ++ +    E   L    ++K ++ PD ++Y
Sbjct: 306 KAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTY 364

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L     K    + A   L  ME + C  N   Y+SL+S    +   DE L ++  M+ 
Sbjct: 365 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVE 424

Query: 308 LFAKMNDAEYTCVISS 323
                +   Y  +IS+
Sbjct: 425 KGCVPDTITYGTIISA 440


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 164/382 (42%), Gaps = 14/382 (3%)

Query: 125 SAENFFENLPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---- 177
           +A + F  LP  +    G  + +ALL ++V+ ++ ++A+A    +S   F +   P    
Sbjct: 101 AALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQT 160

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +L    + G LD+   +   L++   +PD +TY+  +   A Q+  + A     E+ 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYK 295
           ++ + PD + Y+ L     K    EK      ++ K    R N   Y+ +L      G  
Sbjct: 221 RSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            EV  +W++M++   + +   Y  +I  L + G+ + A  +Y E        D  + N L
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +  +    +++ A  F++     G++    T+ ++  G    G +++ +E +      V 
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLRN-LRTYNIMIKGLFDSGMVDEAIELWDLLEKDV- 398

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--P 472
             +PD        + L + G  + A  +    R +G  +    Y+S++      G++   
Sbjct: 399 ACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDA 458

Query: 473 LIIVERMQKDNVQMDAETQKVL 494
           + + E+M KD  + ++     L
Sbjct: 459 VKVYEKMDKDGCKPNSHIYNAL 480



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 161/405 (39%), Gaps = 17/405 (4%)

Query: 58  TMRKW----KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDY 110
            MR W    K+ G   +    N ++  L K  R+K   EV E M    LQ D+      Y
Sbjct: 247 VMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVIT----Y 302

Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSE 168
            + +  + +   +  A   +  +       D    ++L+  + Q  +  EA    +    
Sbjct: 303 GILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGF 362

Query: 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDKE 226
            G L+    YN M+     +G +D+  ++   L+K+ +  PD VT+   +          
Sbjct: 363 AG-LRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFAN 421

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E + +    D  SYS++ +    +     A    ++M+K  C+ N   Y++L+
Sbjct: 422 KAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALI 481

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S +  +    + +RI+ KM           Y  +I  L K  ++++A ++  E      T
Sbjct: 482 SGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT 541

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D      L+    +  +++ A S + +++ KG+K       +L  G    G++++ L  
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
           F   +   +   P+        + L E G ID A  L  ++   G
Sbjct: 602 FSD-MKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDG 645



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 123/301 (40%), Gaps = 39/301 (12%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PDT +   L+H   QN  + +A  + E+    G       Y+ M+N   + G+L    ++
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +++ K+   P+   YN  ++          A + + ++      P  I+Y+TL     K
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCK 521

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
            E  ++A++  +EM +     +   Y SL+    +    D+ L IWK+++    K++   
Sbjct: 522 AEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMM 581

Query: 317 YTCVISSLVKLGEFEKAENIYDE---------------------------------WESI 343
           +  +I  L   G+ ++A +++ +                                 W SI
Sbjct: 582 HNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSI 641

Query: 344 SGTG-DPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           +  G +P +   N  +    + +++       + ++++GI P   TW +L    +K G +
Sbjct: 642 TEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701

Query: 401 E 401
           +
Sbjct: 702 Q 702



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 121 RG-LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           RG L  A   F++L  +   PD  T S L+    +  +   A  L+++M   G     + 
Sbjct: 171 RGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVC 230

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWL-AACASQNDKETAEKAFLE 234
           YN +L      G+ +KV ++  +L K+    P++ TYN+ L   C     KE  E  +  
Sbjct: 231 YNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE-VWER 289

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    + PD I+Y  L     +    + AA    E+ K     +   Y+SL+  +   G 
Sbjct: 290 MVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR 349

Query: 295 KDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWE 341
             E  + W    + FA + N   Y  +I  L   G  ++A  ++D  E
Sbjct: 350 VQEAWKFWDS--AGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLE 395


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 179/414 (43%), Gaps = 37/414 (8%)

Query: 82  RKLKRYKHALEVCEWMELQYDIKLVSGD---YAVHLDLISKIRGLSSAENFFENLPDKMR 138
           RKL  Y  A+ +   ++       ++ D   Y   +++  K +    A    + + D   
Sbjct: 225 RKLSDYSKAISIFSRLK----ASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAV 280

Query: 139 GPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY---NHMLNLYISNGQLDK 193
            PDT S   LL  YV N+K  EA +L  +M+E    KCPL     N M+++Y   GQL  
Sbjct: 281 QPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEA---KCPLDLTTCNIMIDVY---GQL-H 333

Query: 194 VPQMLQEL-----KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
           +P+    L     K    P+V++YN  L      +    A   F  ++   +  + ++Y+
Sbjct: 334 MPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYN 393

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           T+ ++Y K    EKA   ++EM KR    N + YS+++S++   G  D    +++K+ S 
Sbjct: 394 TMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSS 453

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
             ++++  Y  +I +  + G    A+ +  E +       PR   I + A   R + E  
Sbjct: 454 GVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNI--PRDTAIAILARAGRIE-EAT 510

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA--IGSVRKWVPDHRLITA 426
             F      + +K   + +  +   + K  +   V+E F+K   +G    + PD  +I  
Sbjct: 511 WVFRQAFDAREVKDI-SVFGCMINLFSKNKKYANVVEVFEKMREVG----YFPDSDVIAL 565

Query: 427 AYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKMPLIIVERM 479
             N   +  + D A+ L   +   G V   E++  +L  Y    +   ++VE +
Sbjct: 566 VLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLY--GARKDFVMVESL 617



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 154/337 (45%), Gaps = 22/337 (6%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + LL + ++ K+   A  L ++M + G       Y+ ++  +  +G  D     LQ++++
Sbjct: 148 NVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQ 207

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N S D+V Y+  +      +D   A   F  LK + I PD I+Y+++ +++ K +L  +
Sbjct: 208 DNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFRE 267

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-----Y 317
           A   L+EM     + + V+YS+LL++Y +     E L       SLF++MN+A+      
Sbjct: 268 ARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEAL-------SLFSEMNEAKCPLDLT 320

Query: 318 TC--VISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYN 373
           TC  +I    +L   ++A+ ++  W        P V   N LL  Y   +    A   + 
Sbjct: 321 TCNIMIDVYGQLHMPKEADRLF--WSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFR 378

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            + +K ++    T+  +   Y K  + EK     ++   + R   P+    +   +  E+
Sbjct: 379 LMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEM--NKRGIEPNAITYSTIISIWEK 436

Query: 434 QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG 469
            G +D A  L   LR++G  +   +Y +++  Y + G
Sbjct: 437 AGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTG 473



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 11/266 (4%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P +  YN+ L           A   F E+++  + PD  +YSTL + + K  L + +   
Sbjct: 142 PSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFW 201

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L++ME+     + V YS+L+ L   +    + + I+ ++ +     +   Y  +I+   K
Sbjct: 202 LQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGK 261

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
              F +A  +  E    +   D    + LLA Y++  +   A S ++ +         TT
Sbjct: 262 AKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTT 321

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHL 443
             ++   Y   GQ+    E   +   S+RK      +I+  YN L     + D+ G    
Sbjct: 322 CNIMIDVY---GQLHMPKEA-DRLFWSMRKMGIQPNVIS--YNTLLRVYGEADLFGEAIH 375

Query: 444 LVTLRNAGHVSTEI--YNSLLRTYAK 467
           L  L  +  V   +  YN+++  Y K
Sbjct: 376 LFRLMQSKDVQQNVVTYNTMINIYGK 401


>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 821

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 170/400 (42%), Gaps = 54/400 (13%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  T + L+ +Y +  +  EA     +M + G     + +N M+N+  ++G+L++V  ++
Sbjct: 280 GSHTYNTLIDTYGKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLV 339

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +++++   SP+  TYN+ ++  A  +D   A K F  +K+  ++PD +SY TL   Y   
Sbjct: 340 RKMEELRCSPNTRTYNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIR 399

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           ++  +A   +KEM+KR    ++   S+L  +Y   G  D  L +W     +   M    Y
Sbjct: 400 KMIREAEELVKEMDKRRLEIDQYTQSALTRMYIEAGMLDRSL-LWFLRFHVAGNMTSECY 458

Query: 318 TCVISSLVKLGE----------------------------------FEKAENIYDEWESI 343
              I +  + G                                   +EKA  ++D  E  
Sbjct: 459 AANIDAYGEHGHTLEAEKVFIWCQKQKNLSVLEFNVMIKAYGIGKCYEKACQLFDSMEKH 518

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D      L+    + +Q  +A+ +  ++   G+      +  +   + K GQ+E  
Sbjct: 519 GVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVSDCIPYCAVISSFAKLGQLEMT 578

Query: 404 LECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSL 461
            + +++ I   R  V PD  +     N   + G +  A   +  ++ AG   +T IYNSL
Sbjct: 579 EDIYREMI---RHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMKKAGLPGNTVIYNSL 635

Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           ++ YAK              DN++   E  K+L+++ E P
Sbjct: 636 IKLYAKI-------------DNLEKAKEAYKLLQLSDEGP 662



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 160/402 (39%), Gaps = 49/402 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L +K   +  A  +FE + +    PD  S   LL++Y   K   EAE L+++M 
Sbjct: 354 YNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIREAEELVKEMD 413

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT--YNLWLAACASQNDK 225
           +          + +  +YI  G LD+   +L  L+ + + ++ +  Y   + A       
Sbjct: 414 KRRLEIDQYTQSALTRMYIEAGMLDR--SLLWFLRFHVAGNMTSECYAANIDAYGEHGHT 471

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             AEK F+  +K K +   + ++ +   Y   +  EKA      MEK     +R +Y+SL
Sbjct: 472 LEAEKVFIWCQKQK-NLSVLEFNVMIKAYGIGKCYEKACQLFDSMEKHGVVADRCSYTSL 530

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY-------- 337
           + +  +           KKM       +   Y  VISS  KLG+ E  E+IY        
Sbjct: 531 IHILASADQPHIAKPYLKKMQEAGLVSDCIPYCAVISSFAKLGQLEMTEDIYREMIRHGV 590

Query: 338 ---------------------------DEWESISGTGDPRVPNILLAAYINRNQLEMAES 370
                                      DE +     G+  + N L+  Y   + LE A+ 
Sbjct: 591 QPDVIVHGILINVFSDAGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAKE 650

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAY 428
            Y  L      P   +   +   Y+K+  +++  E F+  K  G+  ++     ++   Y
Sbjct: 651 AYKLLQLSDEGPGVYSSNCMIDLYVKRSMVDQAKEIFETLKKNGAANEFT--FAMMLCLY 708

Query: 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
            K+E     D A  +   +R  G ++   YN++L  YA AG+
Sbjct: 709 KKIER---FDEAIQIAKQIRKLGPLTDLSYNNVLDLYAIAGR 747



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 34/258 (13%)

Query: 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG 328
           EM  R        Y +L+ +Y+  G +D+ L     M+    + ++     V+    K G
Sbjct: 172 EMNARGIAATCSTYGTLIDVYSKGGRRDDALSWLNMMLGQGVQPDEVTMVIVVQLYKKAG 231

Query: 329 EFEKAENIYDEWES------------------ISGTGDPRVP-----------NILLAAY 359
           EF+K E  + +W S                   S   D RV            N L+  Y
Sbjct: 232 EFQKGEEFFRKWSSGKPLRSKSKPLRSNDNVVASPELDERVACANASFGSHTYNTLIDTY 291

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
               QL+ A   +  ++ +G+ P   T+  +       G++E+V    +K      +  P
Sbjct: 292 GKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKM--EELRCSP 349

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA--KAGKMPLIIV 476
           + R      +   +  DI  A     T++ A      + Y +LL  Y+  K  +    +V
Sbjct: 350 NTRTYNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIREAEELV 409

Query: 477 ERMQKDNVQMDAETQKVL 494
           + M K  +++D  TQ  L
Sbjct: 410 KEMDKRRLEIDQYTQSAL 427



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 19/184 (10%)

Query: 297 EVLRIWKKMMSLFA-------KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
           E LR W + + +F        ++N   Y  ++ SL +  ++ + E++++E  +       
Sbjct: 124 EQLR-WDRALEIFEWFNKKGHELNVIHYNIMLRSLGRARQWRRVESLWNEMNARGIAATC 182

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
                L+  Y    + + A S+ N ++ +G++P   T  ++   Y K G+ +K  E F  
Sbjct: 183 STYGTLIDVYSKGGRRDDALSWLNMMLGQGVQPDEVTMVIVVQLYKKAGEFQKGEEFF-- 240

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL--LVTLRNAGHVSTEIYNSLLRTYAK 467
                RKW     L + +   L    ++  +  L   V   NA    +  YN+L+ TY K
Sbjct: 241 -----RKWSSGKPLRSKS-KPLRSNDNVVASPELDERVACANAS-FGSHTYNTLIDTYGK 293

Query: 468 AGKM 471
           AG++
Sbjct: 294 AGQL 297



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N M++LY+    +D+  ++ + LKKN + +  T+ + L  C  +  +   E   +  +  
Sbjct: 668 NCMIDLYVKRSMVDQAKEIFETLKKNGAANEFTFAMML--CLYKKIERFDEAIQIAKQIR 725

Query: 239 KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           K+ P   +SY+ +  LY     P++A  T KEM + + + N  +  SL +L    G
Sbjct: 726 KLGPLTDLSYNNVLDLYAIAGRPKEAIETFKEMVRASIQVNDCSLRSLGNLLLRYG 781


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/342 (19%), Positives = 158/342 (46%), Gaps = 17/342 (4%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-K 202
           SA++    ++    +A+ +  +M E G     L YN M++ Y S G+     Q+L+++ +
Sbjct: 84  SAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE 143

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N  PDVVT++  + A   +     AE+ + E+ +  I P  I+YS++   + K    E 
Sbjct: 144 RNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLED 203

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLS-----------LYTNMGYKDEVLRIWKKMMSLFAK 311
           A      M  + C  + +  ++L+             +  +G  +    ++++M+S    
Sbjct: 204 AKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVS 263

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +      +++ L + G+ EKA  ++  ++      D    NI++      N+++ A   
Sbjct: 264 PDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDL 323

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +N L   G++    T+ +L   ++K+G   +  + + + +   +  +P      +  +  
Sbjct: 324 FNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEML--CKGIIPSTVTYNSMVDGF 381

Query: 432 EEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
            +Q  ++ A  ++ ++ + G  S ++  +++L++ Y KAG++
Sbjct: 382 CKQNRLEEARQMVDSMVSEG-CSPDVVTFSTLIKGYCKAGRV 422



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 127/312 (40%), Gaps = 41/312 (13%)

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF 232
           C     H+++ +   G ++    + QE+  N  SPD+VT N  LA        E A + F
Sbjct: 230 CCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMF 289

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
              +K+K+D D  + + + +                      C+ N+V            
Sbjct: 290 KVFQKSKMDLDTATCNIIIN--------------------GMCKGNKV------------ 317

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
              DE   ++  +     + +   Y  +I   VK G F +AE+IY E             
Sbjct: 318 ---DEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTY 374

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           N ++  +  +N+LE A    + +V++G  P   T+  L  GY K G+++  LE F +   
Sbjct: 375 NSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEM-- 432

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             R  V D     A  +   + GD++GA+ +   + ++G     I + S+L       ++
Sbjct: 433 CQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAEL 492

Query: 472 P--LIIVERMQK 481
              L ++E +QK
Sbjct: 493 QKGLTMLEDLQK 504



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 108/253 (42%), Gaps = 3/253 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
             ++  ++ A++ F+ +      PD  TC+ LL    +N K  +A  + +   +      
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFL 233
               N ++N      ++D+   +   L  N    DVVTYN+ +     + +   AE  +L
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+    I P  ++Y+++   + K    E+A   +  M    C  + V +S+L+  Y   G
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAG 420

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             D+ L ++ +M       +   Y  +I    K+G+   A++I++E  S     D     
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480

Query: 354 ILLAAYINRNQLE 366
            +LA    + +L+
Sbjct: 481 SMLAGLCTKAELQ 493



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 32/337 (9%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T   +++   +   +  A  ++ KM E       + Y+ +++    +G   K   +
Sbjct: 43  PDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNI 102

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
             E+ +K   P+V+TYN  +    S      AE+   ++ +  IDPD +++S L + ++K
Sbjct: 103 FTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVK 162

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
                 A    +EM +R      + YSS++  +     K   L   K M  L      + 
Sbjct: 163 EGKVSGAEELYREMLRRNIFPTTITYSSMIDGFC----KHSRLEDAKHMFDLMVSKGCSP 218

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
               +++L+                     G  R    L+  +     + +A+  +  ++
Sbjct: 219 DIITLNTLID--------------------GCCRAKRHLIHGFCQVGNVNVAQDLFQEMI 258

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
           + G+ P   T   L  G  + G++EK LE FK  +    K   D        N + +   
Sbjct: 259 SNGVSPDIVTCNTLLAGLCENGKLEKALEMFK--VFQKSKMDLDTATCNIIINGMCKGNK 316

Query: 437 IDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
           +D A  L  +L   G V T++  YN L+  + K G  
Sbjct: 317 VDEAWDLFNSLPVNG-VETDVVTYNILIGVFVKEGNF 352



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 123/309 (39%), Gaps = 14/309 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD----------TCSA---LLHSYVQNKKS 156
           Y+  +D   K   L  A++ F+ +  K   PD           C A   L+H + Q    
Sbjct: 188 YSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNV 247

Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLW 215
             A+ L ++M   G     +  N +L     NG+L+K  +M +  +K+    D  T N+ 
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNII 307

Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
           +      N  + A   F  L    ++ D ++Y+ L  +++K     +A     EM  +  
Sbjct: 308 INGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGI 367

Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
             + V Y+S++  +      +E  ++   M+S     +   ++ +I    K G  +    
Sbjct: 368 IPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLE 427

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           ++ E        D    N L+  +     L  A+  +  +V+ G+ P   T+  +  G  
Sbjct: 428 LFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487

Query: 396 KKGQMEKVL 404
            K +++K L
Sbjct: 488 TKAELQKGL 496



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 5/234 (2%)

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +T    + ++++TL +   +     +A   +  M +   + + V Y ++++    +G   
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTV 62

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
             L + +KM     K N   Y+ ++  L K G   KA+NI+ E        +    N ++
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMI 122

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             Y +  +   AE     ++ + I P   T+  L   ++K+G++    E +++ +   R 
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR--RN 180

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY--NSLLRTYAKA 468
             P     ++  +   +   ++ A+H+   + + G  S +I   N+L+    +A
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKG-CSPDIITLNTLIDGCCRA 233


>gi|357442727|ref|XP_003591641.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|92882355|gb|ABE86686.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355480689|gb|AES61892.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 171/399 (42%), Gaps = 52/399 (13%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  T + L+ +Y +  +  EA     KM + G     + +N M+++  ++G+L++V  +L
Sbjct: 284 GSHTYNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLL 343

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           +++ +   SPD  TYN  ++     ND + A K F  +K++ ++PD +SY TL   Y   
Sbjct: 344 RKMGELRCSPDTRTYNTLISLHTKHNDIDMATKYFKRMKESYLEPDPVSYRTLLYAYSIR 403

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
           ++  +A   + EM+++    ++   S+L  +Y   G  +  L +W +       M    Y
Sbjct: 404 KMVCEAEELITEMDEKGLEIDQFTQSALTRMYIEAGMPERSL-LWFQRFHRAGNMTSECY 462

Query: 318 TCVISSLVKLGEFEKAENIY---DEWESIS-----------GTG---------------- 347
              I +  + G   +AE ++    E +++S           G G                
Sbjct: 463 AANIDAYGERGHISEAEKVFLWCQERKNLSAVEFNVMIKAYGVGKYYDKACQLFDSMDKH 522

Query: 348 ----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
               D    + L+    + +Q  +A+ +  R+   G+      +  +   ++K GQ+E  
Sbjct: 523 GVAADRCSYSSLIQVLASADQPHIAKPYLKRMQVAGLVTNCIPYCAVISCFVKLGQLEMA 582

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
              +K+ IG   K  PD  +     N L   G +  A      ++ AG   +T IYNSL+
Sbjct: 583 EGVYKEMIGHGVK--PDIIVYGVLINALYGAGRVKEAISYANEIKRAGLPGNTVIYNSLI 640

Query: 463 RTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMP 501
           + Y K G             N++   ET ++L+ + E P
Sbjct: 641 KLYTKVG-------------NLREAQETYRLLQSSEEGP 666



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 3/301 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y   + L +K   +  A  +F+ + +    PD  S   LL++Y   K   EAE L+ +M 
Sbjct: 358 YNTLISLHTKHNDIDMATKYFKRMKESYLEPDPVSYRTLLYAYSIRKMVCEAEELITEMD 417

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
           E G        + +  +YI  G  ++     Q   +  +     Y   + A   +     
Sbjct: 418 EKGLEIDQFTQSALTRMYIEAGMPERSLLWFQRFHRAGNMTSECYAANIDAYGERGHISE 477

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           AEK FL  ++ K +   + ++ +   Y   +  +KA      M+K     +R +YSSL+ 
Sbjct: 478 AEKVFLWCQERK-NLSAVEFNVMIKAYGVGKYYDKACQLFDSMDKHGVAADRCSYSSLIQ 536

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
           +  +           K+M       N   Y  VIS  VKLG+ E AE +Y E        
Sbjct: 537 VLASADQPHIAKPYLKRMQVAGLVTNCIPYCAVISCFVKLGQLEMAEGVYKEMIGHGVKP 596

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           D  V  +L+ A     +++ A S+ N +   G+      +  L   Y K G + +  E +
Sbjct: 597 DIIVYGVLINALYGAGRVKEAISYANEIKRAGLPGNTVIYNSLIKLYTKVGNLREAQETY 656

Query: 408 K 408
           +
Sbjct: 657 R 657



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 4/208 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +    K+  L  AE  ++ +      PD      L+++     +  EA +   ++ 
Sbjct: 566 YCAVISCFVKLGQLEMAEGVYKEMIGHGVKPDIIVYGVLINALYGAGRVKEAISYANEIK 625

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
             G     + YN ++ LY   G L +  +  + L+ +   P V + N  +     Q+  E
Sbjct: 626 RAGLPGNTVIYNSLIKLYTKVGNLREAQETYRLLQSSEEGPAVYSSNCMIGLYTKQSMVE 685

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A++ F  LKK     ++ S++ +  LY  +E  + A     +M K     + ++Y+ +L
Sbjct: 686 QAKEIFETLKKNGTANEF-SFAMMLCLYKNIERFDVAIQIANQMRKLELLTDSLSYNIVL 744

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            LY   G   E + I+K M++   +++D
Sbjct: 745 DLYATAGRPKEAIEIFKDMVTASIQLDD 772



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 81/416 (19%), Positives = 152/416 (36%), Gaps = 73/416 (17%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM--R 138
           L++  ++  ALE+  W     D KL      +H +++ +I G +      E L ++M  R
Sbjct: 132 LKQQVKWDRALEIFNWFN---DNKLELN--VIHYNIMIRILGRAREWALLEGLWNQMNAR 186

Query: 139 G----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
           G      T   L+  Y +     +A   +E M E G     +    ++ LY   G+  K 
Sbjct: 187 GIVATNSTYGTLIDVYSKGGLREDALFWLETMLEHGIEPDEVTMVIVVQLYKKAGEFQKA 246

Query: 195 PQMLQE------------------------LKKNTSPDVVTYNLWLAACASQNDKETAEK 230
            +  ++                        L  N S    TYN  +         + A +
Sbjct: 247 EEFFRKWSLGEPLRPSNKHMMDAPESVERALFSNASFGSHTYNTLIDTYGKAGQHKEASE 306

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
            F ++ K  I P  ++++T+  +       E+ ++ L++M +  C  +   Y++L+SL+T
Sbjct: 307 TFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLLRKMGELRCSPDTRTYNTLISLHT 366

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
                D   + +K+M   + +                                    DP 
Sbjct: 367 KHNDIDMATKYFKRMKESYLE-----------------------------------PDPV 391

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
               LL AY  R  +  AE     +  KG++    T   LT  Y++ G  E+ L  F++ 
Sbjct: 392 SYRTLLYAYSIRKMVCEAEELITEMDEKGLEIDQFTQSALTRMYIEAGMPERSLLWFQRF 451

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466
               R          A  +   E+G I  AE + +  +   ++S   +N +++ Y 
Sbjct: 452 ---HRAGNMTSECYAANIDAYGERGHISEAEKVFLWCQERKNLSAVEFNVMIKAYG 504


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 151/327 (46%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 43  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREAR 102

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           AL+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 103 ALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVY 162

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 163 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 222

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M +   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 223 VTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 282

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L +    P  T   +L       G+
Sbjct: 283 LRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA----GR 338

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 339 IEEATYVFRQAIDAGEVKDITVFERMI 365



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 56/293 (19%), Positives = 125/293 (42%), Gaps = 42/293 (14%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+++  + PD  +YSTL + + K  L + A + L++ME+     + V YS+L+ L   + 
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 294 YKDEVLRIWKK---------------MMSLFAKM--------------------NDAEYT 318
              + + I+ +               M+++F K                     N A Y+
Sbjct: 62  DYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYS 121

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +++  V+  +F +A +++ E   I    D    NI++  Y      + A+  +  +   
Sbjct: 122 TLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           GI+P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH--- 238

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
           + A +L+  ++N G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 239 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 224 TYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 283

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D V Y   + A         A++   ELK     PD I   T   +       
Sbjct: 284 RSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRI 339

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L++       V+ ++ KM  L    +      V
Sbjct: 340 EEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALV 399

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL E +KA ++Y E + + 
Sbjct: 400 LNAYGKLHELDKANDVYMEMQEVG 423


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 132/305 (43%), Gaps = 13/305 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H      K  EA  ++++M E G     + YN ++  + + G+++   ++ +E+
Sbjct: 467 TSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEM 526

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+   PD+ TYN  L    +    + A K + E K + +  +  +Y  +   Y K    
Sbjct: 527 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 586

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E       E+  +    N + Y+ ++  +   G     L++ + M S     N A Y+ +
Sbjct: 587 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 646

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I  +  +G  E A+++ DE        +  VPN+     L+  Y    Q++ AES +  +
Sbjct: 647 IHGVCNIGLVEDAKHLIDEMRK-----EGFVPNVVCYTALIGGYCKLGQMDTAESTWLEM 701

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           ++  I P   T+ ++  GY K G MEK      K   S    VPD        N   +  
Sbjct: 702 ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES--GIVPDVVTYNVLTNGFCKAN 759

Query: 436 DIDGA 440
           D+D A
Sbjct: 760 DMDNA 764



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 109/259 (42%), Gaps = 5/259 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL       K  +A  L ++    G +     Y  M+  Y    +++ V  +
Sbjct: 533 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 592

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYI 255
             EL  K    + + YN+ + A   QN    A    LE  K+K I P+  +YS+L     
Sbjct: 593 FNELLSKKMELNSIVYNIIIKA-HCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 651

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            + L E A   + EM K     N V Y++L+  Y  +G  D     W +M+S     N  
Sbjct: 652 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 711

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            YT +I    KLG  EKA N+  + +      D    N+L   +   N ++ A    +++
Sbjct: 712 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 771

Query: 376 VTKGIKPCYTTWELLTWGY 394
            T+G+     T+  L  G+
Sbjct: 772 ATEGLPVDEITYTTLVHGW 790



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 1/265 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+  +    K      L E+M++ G       YN +L    + G+LD   ++  E 
Sbjct: 502 TYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 561

Query: 202 KKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +    ++ TY + +      N  E  E  F EL   K++ + I Y+ +   + +    
Sbjct: 562 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNV 621

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L+ M+ +    N   YSSL+    N+G  ++   +  +M       N   YT +
Sbjct: 622 AAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTAL 681

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    KLG+ + AE+ + E  S +   +     +++  Y     +E A +   ++   GI
Sbjct: 682 IGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 741

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P   T+ +LT G+ K   M+   +
Sbjct: 742 VPDVVTYNVLTNGFCKANDMDNAFK 766



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 1/220 (0%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K T P + T N  L++    N+ E   + F  + +    PD  S++ + +   K    E
Sbjct: 179 RKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKGGKME 237

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A     +MEK     N V Y+ +++     G  D    + +KM     + N   Y  +I
Sbjct: 238 NAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALI 297

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + L+KL  F+K  +I DE        +  V N L+  Y     +E A    + +++K I 
Sbjct: 298 NGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNIT 357

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           P   T   L  G+ K  Q+E      ++ + S     PD+
Sbjct: 358 PTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN 397



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 137/323 (42%), Gaps = 13/323 (4%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           N  L+  +   + +K  ++ + + +   PDV ++   + A       E A + F++++K 
Sbjct: 190 NFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKL 249

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
            I P+ ++Y+ + +   +    + A    ++M  +  + N   Y +L++    + + D+V
Sbjct: 250 GISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKV 309

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
             I  +M+      N   +  +I    K+G  E A  I D   S + T        L+  
Sbjct: 310 NHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQG 369

Query: 359 YINRNQLEMAESFYNRLVTKG--IKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           +   +Q+E AE+    +++ G  I P  CY+    L     KK +       F K + S 
Sbjct: 370 FCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLC----KKFRYHSAFR-FTKMMLS- 423

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY-NSLLRTYAKAGKMPL 473
           R + P   L+T     L + G    A  L   L   G  ++++  N+L+     AGK+P 
Sbjct: 424 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPE 483

Query: 474 I--IVERMQKDNVQMDAETQKVL 494
              IV+ M +  + MD  T   L
Sbjct: 484 ASRIVKEMLERGLPMDRITYNAL 506


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 132/305 (43%), Gaps = 13/305 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+H      K  EA  ++++M E G     + YN ++  + + G+++   ++ +E+
Sbjct: 490 TSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEM 549

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+   PD+ TYN  L    +    + A K + E K + +  +  +Y  +   Y K    
Sbjct: 550 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 609

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E       E+  +    N + Y+ ++  +   G     L++ + M S     N A Y+ +
Sbjct: 610 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 669

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I  +  +G  E A+++ DE        +  VPN+     L+  Y    Q++ AES +  +
Sbjct: 670 IHGVCNIGLVEDAKHLIDEMRK-----EGFVPNVVCYTALIGGYCKLGQMDTAESTWLEM 724

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           ++  I P   T+ ++  GY K G MEK      K   S    VPD        N   +  
Sbjct: 725 ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES--GIVPDVVTYNVLTNGFCKAN 782

Query: 436 DIDGA 440
           D+D A
Sbjct: 783 DMDNA 787



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 109/259 (42%), Gaps = 5/259 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + LL       K  +A  L ++    G +     Y  M+  Y    +++ V  +
Sbjct: 556 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 615

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYI 255
             EL  K    + + YN+ + A   QN    A    LE  K+K I P+  +YS+L     
Sbjct: 616 FNELLSKKMELNSIVYNIIIKA-HCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 674

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            + L E A   + EM K     N V Y++L+  Y  +G  D     W +M+S     N  
Sbjct: 675 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 734

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            YT +I    KLG  EKA N+  + +      D    N+L   +   N ++ A    +++
Sbjct: 735 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 794

Query: 376 VTKGIKPCYTTWELLTWGY 394
            T+G+     T+  L  G+
Sbjct: 795 ATEGLPVDEITYTTLVHGW 813



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 1/265 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+  +    K      L E+M++ G       YN +L    + G+LD   ++  E 
Sbjct: 525 TYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 584

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K      ++ TY + +      N  E  E  F EL   K++ + I Y+ +   + +    
Sbjct: 585 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNV 644

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L+ M+ +    N   YSSL+    N+G  ++   +  +M       N   YT +
Sbjct: 645 AAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTAL 704

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    KLG+ + AE+ + E  S +   +     +++  Y     +E A +   ++   GI
Sbjct: 705 IGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 764

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLE 405
            P   T+ +LT G+ K   M+   +
Sbjct: 765 VPDVVTYNVLTNGFCKANDMDNAFK 789



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 1/220 (0%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +K T P + T N  L++    N+ E   + F  + +    PD  S++ + +   K    E
Sbjct: 202 RKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKGGKME 260

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A     +MEK     N V Y+ +++     G  D    + +KM     + N   Y  +I
Sbjct: 261 NAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALI 320

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           + L+KL  F+K  ++ DE        +  V N L+  Y     +E A    + +++K I 
Sbjct: 321 NGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNIT 380

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
           P   T   L  G+ K  Q+E      ++ + S     PD+
Sbjct: 381 PTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN 420



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 169/410 (41%), Gaps = 31/410 (7%)

Query: 103 IKLVSGDYAV--------HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY---V 151
           I+L+ G+  V        H+++ + + GL+S    FE              L+H Y    
Sbjct: 133 IRLIDGNLPVLNLDSEKFHIEIANALFGLTSVVGRFE-------WTQAFDLLIHVYSTQF 185

Query: 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211
           +N   + A  +   ++  G        N +L+  +   + +K  ++ + + +   PDV +
Sbjct: 186 RNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFS 245

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           +   + A       E A + F++++K  I P+ ++Y+ + +   +    + A    ++M 
Sbjct: 246 FTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMT 305

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
            +  + N   Y +L++    + + D+V  +  +M+      N   +  +I    K+G  E
Sbjct: 306 VKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIE 365

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKP--CYTTW 387
            A  I D   S + T        L+  +   +Q+E AE+    +++ G  I P  CY+  
Sbjct: 366 GALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVV 425

Query: 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             L     KK +       F K + S R + P   L+T     L + G    A  L   L
Sbjct: 426 HWLC----KKFRYHSAFR-FTKMMLS-RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRL 479

Query: 448 RNAGHVSTEIY-NSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
              G  ++++  N+L+     AGK+P    IV+ M +  + MD  T   L
Sbjct: 480 LEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNAL 529


>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
 gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 506

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 129/268 (48%), Gaps = 7/268 (2%)

Query: 140 PDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVP 195
           P+TC  + L+  + +N     A  ++E+M   G +  P  + Y+ +++   ++ +  +  
Sbjct: 194 PNTCIFNILVKHHCKNGDINFAFLVVEEMKRSG-ISYPNSITYSTLMDCLFAHSRSKEAV 252

Query: 196 QMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           ++ +++  K+  SPD VT+N+ +       + E A+K    +KK   +P+  +YS L + 
Sbjct: 253 ELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNG 312

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + K+   ++A  T  E++K   + + V Y++L++ +   G  DE +++  +M +   + +
Sbjct: 313 FCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRAD 372

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y  ++  L   G  E+A  + D+W S     +     I+L A     +LE A  F +
Sbjct: 373 TLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLS 432

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQME 401
            +  +GI P + TW  L     + G  E
Sbjct: 433 VMSERGIWPHHATWNELVVRLCESGYTE 460



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/298 (19%), Positives = 139/298 (46%), Gaps = 23/298 (7%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           +N ++  +  NG ++    +++E+K++  + P+ +TY+  +    + +  + A + F ++
Sbjct: 199 FNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDM 258

Query: 236 -KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
             K  I PD ++++ + + + +    E+A   L  M+K  C  N   YS+L++ +  +G 
Sbjct: 259 ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGK 318

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
             E  + + ++     K++   YT +++   + GE ++A  +  E ++     D    N+
Sbjct: 319 IQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNV 378

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           +L    +  + E A    ++  ++G+     ++ ++       G++EK ++    ++ S 
Sbjct: 379 ILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFL--SVMSE 436

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
           R   P H    A +N+            L+V L  +G+  TEI   +L  + + G +P
Sbjct: 437 RGIWPHH----ATWNE------------LVVRLCESGY--TEIGVRVLIGFLRIGLIP 476


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 149/338 (44%), Gaps = 10/338 (2%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM---ELQYDIKLVSGDYAVHLD 115
            ++  + G   + Y    +++ L K      A+E+ + M    L+ D  L +    V LD
Sbjct: 37  FQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCN----VVLD 92

Query: 116 LISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
            + K   +  A   F ++       D  T + L+ S  + K+  EA  L ++M E G   
Sbjct: 93  GLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTP 152

Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232
               Y +++++Y   G+++    +L++ L KN +PD  T N  + A +     E A + F
Sbjct: 153 SAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIF 212

Query: 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292
             +KK+ +  + +S++ +     K      A   + EME R  + N + +++L++     
Sbjct: 213 ERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRA 272

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
            Y  E  ++ ++M S     +   YTC+I +  K G   KA  ++ + E    + +    
Sbjct: 273 KYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTY 332

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           N+L+ A +   + + A   Y  +  KGI P   T  +L
Sbjct: 333 NLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA + ++K  ++      Y LN ++  + +  R + A E+ E M+ +  + + +  +   
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK-KSGVAVNTVSFNAM 230

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           LD   K   +  A  F + +  +   P+  T + L++   + K ++EA  ++++M   G 
Sbjct: 231 LDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGL 290

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
                 Y  M+  +   G + K  +M  +++K   S +VVTYNL + A       + A  
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
            + ++KK  I PD I+ + L  L  K +L   +  +L E E+R
Sbjct: 351 IYFDMKKKGILPDAITATVLQQLAGKCKL---SGISLDENEQR 390


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 16/303 (5%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + I  GQ +KV ++  E+    +  PD VTY+  ++A      +++A +   E+
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K+  + P    Y+ + SL+ K++    A +  +EM    CR +   Y+ L+      G  
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-- 353
           DE    + +M     K +      +I+ L K G  +    +++E   +S      +PN  
Sbjct: 317 DEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHC----IPNVV 371

Query: 354 ----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
               I+ A + +++++    S++ R+   GI P   T+ +L  G+ K  ++EK +   ++
Sbjct: 372 TYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEE 431

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKA 468
                + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KA
Sbjct: 432 M--DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 489

Query: 469 GKM 471
           G++
Sbjct: 490 GRL 492



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 7/366 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L  K+  +  A + FE +      PD  T + L+    +  +  EA     +M 
Sbjct: 268 YTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
                   +  N+M+N     G+LD   ++ +E+   +  P+VVTYN  + A      + 
Sbjct: 328 REDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRV 387

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           +   ++ E +K + I P   +YS L   + K    EKA   L+EM+++       AY SL
Sbjct: 388 SEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +         D    +++++       +   Y  +I  L K G  + A N++DE   +  
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGC 507

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           T +    N L++       L+ A +   ++   G  P   ++ ++  G  K G   + +E
Sbjct: 508 TPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAME 567

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
                  S  K  PD        + L   G  + A  L+  +   G     I Y+S+L  
Sbjct: 568 MLTNMKNSTIK--PDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625

Query: 465 YAKAGK 470
             K  +
Sbjct: 626 IGKVDQ 631



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 129/299 (43%), Gaps = 48/299 (16%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDI-KLVSGDYAVHLDLISKIRGLSSAENFFEN 132
           +N ++  L K  R    L++ E M + + I  +V+ +  +     SK R +S   ++FE 
Sbjct: 338 MNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR-VSEVFSWFE- 395

Query: 133 LPDKMRG------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
              +M+G      P T S L+  + +  +  +A  L+E+M E GF  CP  Y  +++   
Sbjct: 396 ---RMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452

Query: 187 SNGQLDKVPQMLQELKKNT------------------------------------SPDVV 210
              + D   ++ QELK+N                                     +P+V 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
            YN  ++  A     + A     ++++    PD  SY+ + +   K   P +A   L  M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           +  T + + V+Y+++LS  ++ G  +E   + K+M +L  + +   Y+ ++ ++ K+ +
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/204 (17%), Positives = 90/204 (44%), Gaps = 4/204 (1%)

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-LFAKMNDAEYTCV 320
           KA T   +++ R C+    AY+S++ +  + G  ++V  ++ +M +      +   Y+ +
Sbjct: 177 KAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSAL 236

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  KLG  + A  + +E +        ++  ++++ +   + +  A S +  +     
Sbjct: 237 ISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYC 296

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  L  G  K G++++    + +         PD  ++    N L + G +D  
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFYHEM--QREDCKPDTVVMNNMINFLGKAGRLDDG 354

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLR 463
             L   +  +  +   + YN++++
Sbjct: 355 LKLFEEMGVSHCIPNVVTYNTIIK 378


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 4/328 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELK 202
           +A++  + +  +   A  ++ +M   GFL   + YN M+    +  +L     +L Q L 
Sbjct: 151 NAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLL 210

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            N  P V+TY + + A   +     A K   E+    + PD  +Y+ +     K  + E+
Sbjct: 211 DNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVER 270

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           AA  +  +  + C  + ++Y+ LL  + N G  DE  ++  +M S   + N   Y+ +IS
Sbjct: 271 AAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILIS 330

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           SL + G  ++A ++         T D    + L++A     +L++A    + +++ G  P
Sbjct: 331 SLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLP 390

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
               +  +     K G   + LE F K  G      P+        + L   GD   A  
Sbjct: 391 DIVNYNTILAALCKNGNANQALEIFNKLRG--MGCPPNVSSYNTMISALWSCGDRSRALG 448

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           ++  + + G    EI YNSL+    + G
Sbjct: 449 MVPAMISKGIDPDEITYNSLISCLCRDG 476



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 123/282 (43%), Gaps = 3/282 (1%)

Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
            ++K  ++++ L+ +T PDV  YN  ++     N  E A +    +K     PD ++Y+ 
Sbjct: 128 NIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNI 187

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +            A T L ++    C    + Y+ L+      G  +E +++ ++M++  
Sbjct: 188 MIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG 247

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              +   Y  +I  + K G  E+A  +     S     D    NILL A++N+ + +  E
Sbjct: 248 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGE 307

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
                + ++G +P   T+ +L     + G++++ +   K  I   ++  PD        +
Sbjct: 308 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE--KELTPDTYSYDPLIS 365

Query: 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
            L ++G +D A  ++  + + G +   + YN++L    K G 
Sbjct: 366 ALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 407



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 1/264 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ + +      EA  L+E+M   G L     YN ++      G +++  +++  L
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 278

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   PDV++YN+ L A  +Q   +  EK   E+     +P+ ++YS L S   +    
Sbjct: 279 TSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 338

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A + LK M ++    +  +Y  L+S     G  D  + I   M+S     +   Y  +
Sbjct: 339 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTI 398

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +++L K G   +A  I+++   +    +    N +++A  +      A      +++KGI
Sbjct: 399 LAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGI 458

Query: 381 KPCYTTWELLTWGYLKKGQMEKVL 404
            P   T+  L     + G +E+ +
Sbjct: 459 DPDEITYNSLISCLCRDGLVEEAI 482



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 125/284 (44%), Gaps = 11/284 (3%)

Query: 120 IRGLSS------AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRG+        A     +L  K   PD  S   LL +++   K  E E L+ +M   G 
Sbjct: 259 IRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 318

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y+ +++     G++D+   +L+ + +K  +PD  +Y+  ++A   +   + A  
Sbjct: 319 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 378

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
               +      PD ++Y+T+ +   K     +A     ++    C  N  +Y++++S   
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 438

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G +   L +   M+S     ++  Y  +IS L + G  E+A  + D+ E  SG     
Sbjct: 439 SCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ-SGFRPTV 497

Query: 351 VP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
           +  NI+L       +++ A   +  ++ KG +P  TT+ LL  G
Sbjct: 498 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEG 541



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 3/218 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y++ +  + +   +  A +  + + +K   PDT S   L+ +  +  +   A  +M+ M 
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G L   + YN +L     NG  ++  ++  +L+     P+V +YN  ++A  S  D+ 
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 444

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A      +    IDPD I+Y++L S   +  L E+A   L +ME+   R   ++Y+ +L
Sbjct: 445 RALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 504

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
                +   D+ + ++ +M+    + N+  Y  +I  +
Sbjct: 505 LGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQ----LDKVPQ 196
           + +L +  +N  + +A  +  K+   G   CP     YN M++   S G     L  VP 
Sbjct: 396 NTILAALCKNGNANQALEIFNKLRGMG---CPPNVSSYNTMISALWSCGDRSRALGMVPA 452

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           M+    K   PD +TYN  ++        E A     +++++   P  ISY+ +     K
Sbjct: 453 MIS---KGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 509

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +   + A     EM ++ CR N   Y  L+      G++ E + +   + S
Sbjct: 510 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 560


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 133/298 (44%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  GQ +KV ++  E+    +  PD VTY+  ++A      +++A +   E+
Sbjct: 193 YNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEM 252

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   + P    Y+ L +L+ K+     A    +EM  + CR +   Y+ L+      G  
Sbjct: 253 KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRF 312

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-I 354
           DE    + +M     + +      +I+ L K G  + A  +++E  ++         N I
Sbjct: 313 DEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTI 372

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + A + +++++    S++ R+   GI P   T+ +L  G+ K  + EK +   ++     
Sbjct: 373 IKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM--DE 430

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  + L +    D A  L   L+ N G  S  +Y  +++   KAG++
Sbjct: 431 KGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL 488



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 143/363 (39%), Gaps = 7/363 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L  K+  +  A   FE +  +   PD  T + L+    +  +  EA     +M 
Sbjct: 264 YTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMR 323

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     +  N+M+N     G+LD   ++ +E+      P VVTYN  + A      + 
Sbjct: 324 REGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRI 383

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           +   ++ E +K + I P   +YS L   + K    EKA   L+EM+++       AY SL
Sbjct: 384 SEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSL 443

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +         D    +++++       +   Y  +I  L K G  + A N++DE   +  
Sbjct: 444 IDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGC 503

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           T +    N L++       L+ A +   R+   G  P   ++ ++  G  K G   + +E
Sbjct: 504 TPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 563

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
                  S  K  PD          +   G  + A  L+  +   G     I Y+S+L  
Sbjct: 564 MLSNMKQSAIK--PDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEA 621

Query: 465 YAK 467
             K
Sbjct: 622 IGK 624



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 130/308 (42%), Gaps = 48/308 (15%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM-ELQYDIKLVSGDYAVHLDLISKIR 121
           + EG       +N ++  L K  R   A+++ E M  LQ    +V+ +  +     SK R
Sbjct: 323 RREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSR 382

Query: 122 GLSSAENFFENLPDKMRG------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            +S   ++FE    +M+G      P T S L+  + +  ++ +A  L+E+M E GF  CP
Sbjct: 383 -ISEISSWFE----RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNT------------------------------ 205
             Y  +++      + D   ++ QELK+N                               
Sbjct: 438 AAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDE 497

Query: 206 ------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
                 +P+V  YN  ++  A     + A      +++    PD  SY+ + +   K   
Sbjct: 498 MNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGG 557

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
           P +A   L  M++   + + V+Y+++L   ++ G  +E  ++ K+M  L  + +   Y+ 
Sbjct: 558 PHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSS 617

Query: 320 VISSLVKL 327
           ++ ++ K+
Sbjct: 618 ILEAIGKV 625


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 140/320 (43%), Gaps = 12/320 (3%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACA 220
           L  +M E G     + YN +++ Y   G L++V  +  E+K     PD++TYN  L  C 
Sbjct: 311 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYN-GLINCY 369

Query: 221 SQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
            + +K   A + F E+K   + P+ ++YSTL   + K  + + A     +M +     N 
Sbjct: 370 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE 429

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             Y+SL+      G   E  ++   M+    K+N   YT ++  L K G   +AE ++  
Sbjct: 430 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 489

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                 + + +V   L+  YI   ++E A     ++    IKP    +  + WG+  + +
Sbjct: 490 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 549

Query: 400 MEK---VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456
           +E+   +LE  K    S    +     I  AY K  +  D   A +    +++ G  +T 
Sbjct: 550 LEETKLILEEMKSRGISANPVISTT--IIDAYFKAGKSSD---ALNFFQEMQDVGVEATI 604

Query: 457 I-YNSLLRTYAKAGKMPLII 475
           + Y  L+    KAG + L +
Sbjct: 605 VTYCVLIDGLCKAGIVELAV 624



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/419 (19%), Positives = 173/419 (41%), Gaps = 43/419 (10%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y V +D + K   L ++   F  + +    PD  T ++L+  Y +     E  +L  +M 
Sbjct: 292 YNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK 351

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKE 226
           + G +   + YN ++N Y    ++ +  +   E+K N   P+VVTY+  + A   +   +
Sbjct: 352 DVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQ 411

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F+++++T + P+  +Y++L     K     +A   L +M +   + N V Y++LL
Sbjct: 412 GAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 471

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN----------- 335
                 G   E   +++ M+      N   YT ++   +K    E A             
Sbjct: 472 DGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIK 531

Query: 336 ------------------------IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
                                   I +E +S   + +P +   ++ AY    +   A +F
Sbjct: 532 PDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNF 591

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
           +  +   G++    T+ +L  G  K G +E  ++ F + +    +  P+  + T+  + L
Sbjct: 592 FQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQ--PNVAVYTSLIDGL 649

Query: 432 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            +   I+ A+ L   ++  G       + +L+    K G +   L+++ RM +  ++ D
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFD 708



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 136/332 (40%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L+ +  +     EA  L+  M + G     + Y  +L+     G++ +  ++ +  
Sbjct: 431 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 490

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           LK   SP+   Y   +         E A K   ++ +  I PD I Y ++   +      
Sbjct: 491 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 550

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+    L+EM+ R    N V  ++++  Y   G   + L  +++M  +  +     Y  +
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 610

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L K G  E A + +    S+    +  V   L+      N +E A+  ++ +  +G+
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P  T +  L  G LK G +++ L    +      ++  D  + T+  +   + G++  A
Sbjct: 671 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF--DLHVYTSLVSGFSQCGELHQA 728

Query: 441 EHLLVTLRNAGHVSTEIYN-SLLRTYAKAGKM 471
                 +   G +  E+    LLR Y K G++
Sbjct: 729 RKFFNEMIEKGILPEEVLCICLLREYYKRGQL 760



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            NGQL  V +   ++     +P V TYN+ +     + D E + + F+++++  + PD +
Sbjct: 268 GNGQL--VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVV 325

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y++L   Y K+   E+ A+   EM+   C  + + Y+ L++ Y            + +M
Sbjct: 326 TYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM 385

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
            +   K N   Y+ +I +  K G  + A  ++ +        +      L+ A      L
Sbjct: 386 KNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNL 445

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             A    N ++  G+K    T+  L  G  K G+M +  E F+  +       P+ ++ T
Sbjct: 446 TEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD--GISPNQQVYT 503

Query: 426 A---AYNKLEEQGD 436
           A    Y K E   D
Sbjct: 504 ALVHGYIKAERMED 517


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 183/470 (38%), Gaps = 93/470 (19%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   D   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHAAKTSEHALQFFRWVERS---NLFEHDRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECG--------------------FLKCP 175
                D    ++ SY +     E+  L +KM E G                    F+   
Sbjct: 76  LEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAK 135

Query: 176 LPYNHMLNL---------------YISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC 219
             +N ML+                +  +G++D   +  +++K +  SPDVVTYN  +  C
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREISPDVVTYNTMINGC 195

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + AEK F+E+K   I+P  ++Y+TL   Y+ ++    A   ++EM+    + N 
Sbjct: 196 YRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNA 255

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMNDAEYTCVISSLVKLGEFEKAENIYD 338
           + YS+LL    N G   E   I K+M+  + A  +++ +  +ISS  + G  + A ++  
Sbjct: 256 ITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAADVLK 315

Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI--KPCYTTWELLTWGYLK 396
               +S   +     +L+  +    Q + A    ++L+ K I  +P  T           
Sbjct: 316 AMIRLSVPTEAGHYGVLIENFCKAGQHDRAVKLLDKLIEKDIILRPQSTL---------- 365

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGH 452
              ME                        +AYN + E     G    AE L+  L   G 
Sbjct: 366 --HME-----------------------PSAYNPMIEYLCSNGQTAKAEALVRQLLKLGV 400

Query: 453 VSTEIYNSLLRTYAKAGK-------MPLIIVERMQKDNVQMDAETQKVLK 495
             T   N+L+R YA+ G        + +++  ++  +    DA  Q  LK
Sbjct: 401 QDTTALNTLIRGYAQEGSPDSAFELLKIMLRRKVDSEKSAYDALVQSYLK 450



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 114/289 (39%), Gaps = 13/289 (4%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++   + KK  EAE    +M         + Y  
Sbjct: 166 MDTAMRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+S  Q+    ++++E+K     P+ +TY+  L    +      A+    E+    
Sbjct: 226 LIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKY 285

Query: 240 IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           I P D   +  L S   +    + AA  LK M + +       Y  L+  +   G  D  
Sbjct: 286 IAPKDNSIFMRLISSQCEAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDRA 345

Query: 299 LRIWKKMM--------SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           +++  K++             M  + Y  +I  L   G+  KAE +  +   + G  D  
Sbjct: 346 VKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCSNGQTAKAEALVRQLLKL-GVQDTT 404

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             N L+  Y      + A      ++ + +    + ++ L   YLKK +
Sbjct: 405 ALNTLIRGYAQEGSPDSAFELLKIMLRRKVDSEKSAYDALVQSYLKKNE 453



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 41/96 (42%)

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           P  YN M+    SNGQ  K   ++++L K    D    N  +   A +   ++A +    
Sbjct: 369 PSAYNPMIEYLCSNGQTAKAEALVRQLLKLGVQDTTALNTLIRGYAQEGSPDSAFELLKI 428

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           + + K+D +  +Y  L   Y+K   P  A   L  M
Sbjct: 429 MLRRKVDSEKSAYDALVQSYLKKNEPADAKAALDSM 464


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 133/303 (43%), Gaps = 3/303 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K   ++ A +    + D+   PD  T S +LH +       EA  L  +M 
Sbjct: 235 YTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMV 294

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
               +   + +  +++     G + +   + + + KK   P+  TYN  +      N  +
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMD 354

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A+K    +      P   SY+ L + Y K    ++A + L EM ++    + V YS+L+
Sbjct: 355 EAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                +G   E L ++K+M S     +   Y+ ++  L K G  ++A  +    +     
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIE 474

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D  + NIL+       +LE+A+  +++L   GI+P   T+ ++  G LK+G  ++  E 
Sbjct: 475 PDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYEL 534

Query: 407 FKK 409
           F+K
Sbjct: 535 FRK 537



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 153/340 (45%), Gaps = 6/340 (1%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA 217
           A +++ KM + G     + +N ++N     G++ +   +  E+ ++   PDV++Y+  + 
Sbjct: 146 AISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVIN 205

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                 +   A +   ++++    P+ ++Y+T+     K  L   A   L EM  R    
Sbjct: 206 GLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPP 265

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V YS++L  + ++G+ +E   ++ +M+      N   +T ++  L K G   +A  ++
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           +         +    N L+  Y   NQ++ A+   + +V KG  P   ++ +L  GY K+
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
            ++++      +   S ++  PD    +     L + G    A +L   + ++G +   +
Sbjct: 386 RRLDEAKSLLVEM--SEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLM 443

Query: 458 -YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            Y++LL    K G +   L +++ MQ+  ++ D     +L
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNIL 483



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 127/284 (44%), Gaps = 3/284 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D + K   +S A   FE +  K   P+  T +AL+  Y  N +  EA+ +++ M 
Sbjct: 305 FTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMV 364

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           + G       YN ++N Y    +LD+   +L E+ +K  +PD VTY+  +         +
Sbjct: 365 DKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQ 424

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+  + + PD ++YSTL     K    ++A   LK M++     + V Y+ L+
Sbjct: 425 EALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILI 484

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  +    ++ K+ +   +     YT +I  L+K G  ++A  ++ + E     
Sbjct: 485 EGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFL 544

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +    N+++  ++       A    + +V K      +T+++L
Sbjct: 545 PNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQML 588


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 166/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSSKTSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    YN +  + +  G+     
Sbjct: 76  LEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L    +  +A  I  E  +      D  +   L++++     L+ A     
Sbjct: 256 ITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKL 431
            ++   +      + LL   + K GQ +K ++   K I       P     L  +AYN +
Sbjct: 316 AMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNSM 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEG 417



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 13/289 (4%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++ Y + KK  EAE    +M         + Y  
Sbjct: 166 VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+S  Q+D   ++++E+K     P+ +TY+  L    +      A     E+    
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285

Query: 240 IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           + P D      L S + K    + AA  LK M + +       Y  L+  +   G  D+ 
Sbjct: 286 LAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKA 345

Query: 299 LRIWKKMM--------SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           +++  K++             +  + Y  +I  L   G+  KAE +  +   + G  DP 
Sbjct: 346 VKLLDKLIEKDIILRPQSTLHLEPSAYNSMIEYLCNNGQASKAETLVRQLMKL-GVQDPT 404

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             N L+  +      + A      ++ + +    + + LL   YLKK +
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNE 453


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 33/333 (9%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL 216
           E   ++ K++ C F +C              G+ +K   +++E+  K   PD  TY+  +
Sbjct: 80  EMGVVLNKVNVCNFTRC----------LCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVI 129

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
               + +  E A + F E+K+  I PD  +Y+TL   + K+ L E+A     EM++  C 
Sbjct: 130 GYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCA 189

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            N V Y++L+  Y           I++ M+S     N   YT +I    K GE EKA  I
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249

Query: 337 YDEWESISGTGDPRV-------------PNI-----LLAAYINRNQLEMAESFYNRLVTK 378
           Y   ++      P V             PN+     L+      ++++ A      +  +
Sbjct: 250 YARMKN-DKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLE 308

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G +P    ++ L  G+ K G++++  E F K +G      P+    ++  +KL +   +D
Sbjct: 309 GCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG--HGCSPNVYTYSSLIDKLFKDKRLD 366

Query: 439 GAEHLLV-TLRNAGHVSTEIYNSLLRTYAKAGK 470
            A  +L   L N+   +  IY  ++    K GK
Sbjct: 367 LALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK 399



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 152/338 (44%), Gaps = 25/338 (7%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYN 213
           K  +A  ++ +M   GF+     Y+ ++    +  +++K  Q+ QE+K+N  +PDV TY 
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYT 161

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             L         E A   F E+++    P+ ++Y+ L   Y+K     +A    + M   
Sbjct: 162 TLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSN 221

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM---------MSLFAKMNDAE-------- 316
            C  N V Y++L+  +   G  ++  +I+ +M         + ++ ++ D+E        
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVT 281

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNILLAAYINRNQLEMAESFYNR 374
           Y  ++  L K  + ++A ++  E  S+ G  +P   + + L+  +    +L+ A+  + +
Sbjct: 282 YGALVDGLCKAHKVKEARDLL-ETMSLEGC-EPNQIIYDALIDGFCKVGKLDEAQEVFTK 339

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           ++  G  P   T+  L     K  +++  L+   K + +     P+  + T   + L + 
Sbjct: 340 MLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLEN--SCAPNVVIYTEMVDGLCKV 397

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
           G  D A  L++ +   G + +   Y +++  + KAG++
Sbjct: 398 GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRV 435



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 121/286 (42%), Gaps = 5/286 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +   + +F  +  +++ P+  T  AL+    +  K  EA  L+E MS  G     + Y+ 
Sbjct: 260 IPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDA 319

Query: 181 MLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++ +   G+LD+  ++  + L    SP+V TY+  +         + A K   ++ +  
Sbjct: 320 LIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENS 379

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+ + Y+ +     K+   ++A   +  ME++ C  N V Y++++  +   G  D  L
Sbjct: 380 CAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCL 439

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            + + M S     N   Y  +I+     G  + A  + +E +         +   ++  +
Sbjct: 440 ELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF 499

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
              ++   +      L   G  P    ++LL   ++K G++E  LE
Sbjct: 500 --SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALE 543



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 8/249 (3%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL------TSLYIKMELP 260
           P  + +N  + A     D   A K   ++      P ++ Y+ L      T     ME+ 
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A     EM +     N+V   +       +G  ++   + ++MMS     + + Y+ V
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKV 128

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L    + EKA  ++ E +    T D      LL  +     +E A ++++ +   G 
Sbjct: 129 IGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGC 188

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L   YLK  ++ +  E F+  + +    VP+    TA  +   + G+ + A
Sbjct: 189 APNVVTYTALIHAYLKTRKLSRANEIFEMMLSN--GCVPNIVTYTALIDGHCKAGETEKA 246

Query: 441 EHLLVTLRN 449
             +   ++N
Sbjct: 247 CQIYARMKN 255


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 166/370 (44%), Gaps = 16/370 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           ++ G +  +Y  + ++    K   +  AL   + ME       V GD  ++ +LI   R 
Sbjct: 1   RQRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDR----VPGDLVLYSNLIELSRK 56

Query: 123 L---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           L   S A + F  L      PD  +  A+++ + + K   EA +L+ +M   G +     
Sbjct: 57  LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXS 116

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +         + A+K F  ++
Sbjct: 117 YSTLLTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 176

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N V Y+S++ +Y      +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +  S     D  +   ++
Sbjct: 237 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 296

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSV 414
            AY     +  A+   + L      P  T   +L       G++E+    F++AI  G V
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GRIEEATYVFRQAIDAGEV 352

Query: 415 RKWVPDHRLI 424
           +      R+I
Sbjct: 353 KDITVFERMI 362



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 122/299 (40%), Gaps = 45/299 (15%)

Query: 85  KRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143
           K++  AL V  E  EJ+  + L + +  + +D+  ++     A+  F  +      P+  
Sbjct: 128 KKFLEALSVFSEMREJKCLLDLTTCN--IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 144 S--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           S   LL  Y   +   EA  L   M      +  + YN M+ +Y    + +K   ++QE+
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   P+ +TY+  ++        + A   F +L+ + I+ D I + T+   Y +  L 
Sbjct: 246 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLV 305

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE---VLR------------IWKKM 305
             A   L E++    R + +   + + +    G  +E   V R            ++++M
Sbjct: 306 AHAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERM 361

Query: 306 MSL-------------FAKMNDAEY-------TCVISSLVKLGEFEKAENIYDEWESIS 344
           + L             F KM    Y         V+++  KL EF+KA ++Y E + + 
Sbjct: 362 IHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 420


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A+L      K+  + E LM++M         + +N ++     NG  ++V ++L ++ +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PD+  Y   +     +   E A +    +    + P+ + Y+T+       E  ++
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM ++ C  + V ++ L+  +   G  D V+ + ++M+S     +   YT VI+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  ++A  +     S     +     I+L    +  +   AE   ++++ +G  P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L     KKG +E+ +E  K+ +  V    PD    +   + L + G  + A  
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           LL  + N G   +T IY+S+    ++ G++  +I   + ++   ++ DA
Sbjct: 518 LLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M   G 
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ V+Y + L    S      AE+
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +    P+ ++++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  +E L +   M++     N   Y+ +  +L + G   K   ++D  +  +   D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + + A  F+  +V+ G  P  +T+ +L  G   +G  ++  E   + 
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 411 I--GSVRKWVPDH 421
              G++RK +  H
Sbjct: 628 CSRGALRKHLMRH 640



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 153/371 (41%), Gaps = 15/371 (4%)

Query: 110 YAVHLDLIS---KIRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAE 158
           +    D++S    ++GL  A+ +   E L D+M   D      T + L+    +N     
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
              ++ +MSE G       Y  +++     G L+   ++L  +      P+VV YN  L 
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLK 329

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              S    + AE+   E+ +     D ++++ L   + +  L ++    L++M    C  
Sbjct: 330 GLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + + Y+++++ +   G  DE + + K M S   K N   YT V+  L   G +  AE + 
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +        +P   N L+     +  +E A     +++  G  P   ++  +  G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G+ E+ LE     +   +   P+  + ++    L  +G ++    +   +++    S  +
Sbjct: 510 GKTEEALELLNVMVN--KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 458 -YNSLLRTYAK 467
            YN+++ +  K
Sbjct: 568 LYNAVISSLCK 578



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 4/293 (1%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +LN     G +D+   +L++L       D+V+YN  L            E+   E+ +
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+ ++++TL     +  L E+    L +M +  C  +   Y++++      G+ + 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              I  +M S   K N   Y  V+  L     +++AE +  E        D    NIL+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            +     ++       ++++ G  P   T+  +  G+ K+G +++ +   K       K 
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK- 423

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            P+    T     L   G    AE L+  +   G     + +N+L+    K G
Sbjct: 424 -PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A+L      K+  + E LM++M         + +N ++     NG  ++V ++L ++ +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PD+  Y   +     +   E A +    +    + P+ + Y+T+       E  ++
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM ++ C  + V ++ L+  +   G  D V+ + ++M+S     +   YT VI+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  ++A  +     S     +     I+L    +  +   AE   ++++ +G  P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L     KKG +E+ +E  K+ +  V    PD    +   + L + G  + A  
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           LL  + N G   +T IY+S+    ++ G++  +I   + ++   ++ DA
Sbjct: 518 LLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M   G 
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ V+Y + L    S      AE+
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +    P+ ++++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  +E L +   M++     N   Y+ +  +L + G   K   ++D  +  +   D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + + A  F+  +V+ G  P  +T+ +L  G   +G  ++  E   + 
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 411 I--GSVRKWVPDH 421
              G++RK +  H
Sbjct: 628 CSRGALRKHLMRH 640



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 153/371 (41%), Gaps = 15/371 (4%)

Query: 110 YAVHLDLIS---KIRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAE 158
           +    D++S    ++GL  A+ +   E L D+M   D      T + L+    +N     
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
              ++ +MSE G       Y  +++     G L+   ++L  +      P+VV YN  L 
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLK 329

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              S    + AE+   E+ +     D ++++ L   + +  L ++    L++M    C  
Sbjct: 330 GLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + + Y+++++ +   G  DE + + K M S   K N   YT V+  L   G +  AE + 
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +        +P   N L+     +  +E A     +++  G  P   ++  +  G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G+ E+ LE     +   +   P+  + ++    L  +G ++    +   +++    S  +
Sbjct: 510 GKTEEALELLNVMVN--KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 458 -YNSLLRTYAK 467
            YN+++ +  K
Sbjct: 568 LYNAVISSLCK 578



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 4/293 (1%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +LN     G +D+   +L++L       D+V+YN  L            E+   E+ +
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+ ++++TL     +  L E+    L +M +  C  +   Y++++      G+ + 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              I  +M S   K N   Y  V+  L     +++AE +  E        D    NIL+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            +     ++       ++++ G  P   T+  +  G+ K+G +++ +   K       K 
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK- 423

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            P+    T     L   G    AE L+  +   G     + +N+L+    K G
Sbjct: 424 -PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 117/268 (43%), Gaps = 1/268 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H   +N    +   + EKM E G       YN ++N    +G+     ++  E+
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  S ++VTYN  +     +     A K   ++K   I+P+ I+Y+TL   +  +   
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA +  ++++ R    + V Y+ L+S +   G      ++ K+M     K +   YT +
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I +  +    E A  +    E +    D    ++L+  +  + Q+  A   +  +V K +
Sbjct: 415 IDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKML 474

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFK 408
           +P    +  +  GY K+G   + L  F+
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALRLFR 502



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 147/355 (41%), Gaps = 9/355 (2%)

Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
            ++++YVQ++    +     +M + GF+     +N++L   + +   ++      E K  
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK 158

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              DV ++ + +  C    + E +    +EL++    P+ + Y+TL     K    EKA 
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               EM K     N   Y+ L+      G K +   +++KM       N   Y CV++ L
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQL 278

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A  ++DE      + +    N L+       +   A    +++ +  I P  
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNL 338

Query: 385 TTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
            T+  L  G+   G++ K L   +  K+ G     V  + L++    K    GD  GA  
Sbjct: 339 ITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRK----GDTSGAAK 394

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVER--MQKDNVQMDAETQKVL 494
           ++  +   G   +++ Y  L+ T+A++  M   I  R  M++  +  D  T  VL
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVL 449



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 11/256 (4%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +  K+ EA  +M++M         + YN +++ + S G+L K   + ++L
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDL 364

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K +  SP +VTYN+ ++    + D   A K   E+++  I P  ++Y+ L   + + +  
Sbjct: 365 KSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A      ME+     +   YS L+  +   G  +E  R++K M+    + N+  Y  +
Sbjct: 425 ETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTM 484

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-----NQLEMAESFYNRL 375
           I    K G   +A  ++ + E          PN+   +Y+ R      +L+ AE    ++
Sbjct: 485 ILGYCKEGSSYRALRLFRDMEE-----KELAPNVASYSYLIRVLCKERKLKEAEDLVEKM 539

Query: 376 VTKGIKPCYTTWELLT 391
           +  GI P  T   L++
Sbjct: 540 IDSGIDPSDTICNLIS 555


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 18/353 (5%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLYISNGQLDKVPQMLQE 200
           +A LH  + +   A A  L   +     L+ PL    +N ML    + G   K  + L+ 
Sbjct: 85  TASLHPLLSSLPPAPAFVLFADIFR---LRLPLSTTTFNIMLRHLCTAG---KPVRALEL 138

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMEL 259
           L++  SP+ VTYN  +A   ++   +   +   E++ +  I PD  +Y+T+ S + K+  
Sbjct: 139 LRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGK 198

Query: 260 PEKAATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
            E A     EM  +     N V Y++L+  Y + G  +  LR   +M+     M  A Y 
Sbjct: 199 VEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYN 258

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
             + +L   G   +A  + +E        D    NIL+  Y    + + A   +  +V K
Sbjct: 259 LFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGK 318

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDI 437
           GI+    T+  L      KG +++    F  A   VR+ + PD  +  A  N     GD+
Sbjct: 319 GIRATVVTYTSLIHALSMKGMVQETDRLFNDA---VRRGIRPDLFMYNALINSHCTGGDM 375

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLI--IVERMQKDNVQMD 487
           D A  ++  +        ++ YN+L+R     G++     ++E M K  +Q D
Sbjct: 376 DRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPD 428



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 36/235 (15%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-- 199
           T +  +H+     ++AEA AL+E+M E G       YN ++N Y   G+  K  +M +  
Sbjct: 256 TYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVM 315

Query: 200 ----------------------------------ELKKNTSPDVVTYNLWLAACASQNDK 225
                                              +++   PD+  YN  + +  +  D 
Sbjct: 316 VGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDM 375

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A +   E++K +I PD ++Y+TL      +   ++A   ++EM KR  + + V+Y++L
Sbjct: 376 DRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTL 435

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           +S Y+  G   + +++  +MM          Y  +I  L   G+   AE++  E 
Sbjct: 436 ISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEM 490



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 1/236 (0%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN ++  Y   G L+   +   E+  +  S  V TYNL++     +     A     E+ 
Sbjct: 222 YNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMG 281

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           +  + PD  +Y+ L + Y K    +KA    + M  +  R   V Y+SL+   +  G   
Sbjct: 282 EKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQ 341

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  R++   +    + +   Y  +I+S    G+ ++A  I  E E    T D    N L+
Sbjct: 342 ETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLM 401

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
                  +L+ A      +  +GI+P   ++  L  GY  KG ++  ++   + +G
Sbjct: 402 RGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMG 457



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 1/184 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L+H+        E + L       G       YN ++N + + G +D+  +++ E+
Sbjct: 326 TYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEM 385

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            KK  +PD VTYN  +         + A     E+ K  I PD +SY+TL S Y      
Sbjct: 386 EKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDI 445

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A     EM  +      + Y++++      G   +   + K+M+      +D+ Y  +
Sbjct: 446 KDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISL 505

Query: 321 ISSL 324
           I  L
Sbjct: 506 IEGL 509


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 133/298 (44%), Gaps = 17/298 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +ALLH   +     E   ++++M E G L   + YN ++      G++++  ++ +E+
Sbjct: 503 TSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEM 562

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   PD  TYN  +   A     +   +   E K+    P+  +Y+ L   Y K +  
Sbjct: 563 VQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRI 622

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E A    K ++      + V Y+ L++ Y  +G   E  ++   M S       A Y+ +
Sbjct: 623 EDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSL 682

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRL 375
           I  +  +G  ++A+ I++E  +     +  +PN+     L+  +    Q+++  S    +
Sbjct: 683 IHGMCCIGRVDEAKEIFEEMRN-----EGLLPNVFCYTALIGGHCKLGQMDIVGSILLEM 737

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            + GI+P   T+ ++  GY K G M++  E   + I +     PD    T  YN L++
Sbjct: 738 SSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRN--GIAPD----TVTYNALQK 789



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 1/201 (0%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           K+   P + T NL L++    N+   + + F +L    + PD  +++T  + + K     
Sbjct: 214 KRGVFPCLKTCNLLLSSLVKANELHKSYEVF-DLACQGVAPDVFTFTTAINAFCKGGRVG 272

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
            A     +ME      N V Y++++      G  +E LR   +M+      +   Y  +I
Sbjct: 273 DAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLI 332

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           S L+KL  FE+A  +  E  S+    +  V N L+  Y  +  +  A    + +  KG+K
Sbjct: 333 SGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMK 392

Query: 382 PCYTTWELLTWGYLKKGQMEK 402
           P + T+  L  G+ +  QME+
Sbjct: 393 PNFVTFNTLLQGFCRSNQMEQ 413



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 151/358 (42%), Gaps = 8/358 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC+ LL S V+  +  ++  + +   + G       +   +N +   G++     +  ++
Sbjct: 223 TCNLLLSSLVKANELHKSYEVFDLACQ-GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKM 281

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +     P+VVTYN  +         E A +    + ++K++P  ++Y  L S  +K+E+ 
Sbjct: 282 EGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMF 341

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   L EM       N V +++L+  Y   G   E LR+  +M     K N   +  +
Sbjct: 342 EEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTL 401

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +    +  + E+AE +     S   + +  V + ++   + R+    A     +L++  I
Sbjct: 402 LQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNI 461

Query: 381 KPCYTTWELLTWGYLK-KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439
           +   +    L  G  K +G  E +   FK A  +V+    +     A  + L E+G+++ 
Sbjct: 462 RVSDSLLTPLVVGLCKCEGHSEAIELWFKLA--AVKGLAANTVTSNALLHGLCERGNMEE 519

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
              +L  +   G +   I YN+L+    K GK+     + E M +   Q D  T   L
Sbjct: 520 VFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFL 577



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/410 (19%), Positives = 153/410 (37%), Gaps = 73/410 (17%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWL 216
           EA  ++ +M   GF    + +N +++ Y   G + +  ++  E+  K   P+ VT+N  L
Sbjct: 343 EANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLL 402

Query: 217 AACASQNDKETAEKAFLELKKT--KIDPDWISY--------------------------- 247
                 N  E AE+  + +  +   ++ D  SY                           
Sbjct: 403 QGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIR 462

Query: 248 ---STLTSLYIKMELPEKAATTLKEMEKRTCRK----NRVAYSSLLSLYTNMGYKDEVLR 300
              S LT L + +   E  +  ++   K    K    N V  ++LL      G  +EV  
Sbjct: 463 VSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFE 522

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           + K+M+     ++   Y  +I    K G+ E+A  + +E        D    N L+    
Sbjct: 523 VLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLA 582

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA---------- 410
           +  +++      +     G  P   T+ LL  GY K  ++E  ++ FK            
Sbjct: 583 DMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSV 642

Query: 411 -----------IGSV------------RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
                      IG+V            R  +P     ++  + +   G +D A+ +   +
Sbjct: 643 VYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEM 702

Query: 448 RNAGHV-STEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
           RN G + +   Y +L+  + K G+M ++  I+  M  + ++ +  T  ++
Sbjct: 703 RNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIM 752



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 36/247 (14%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
           K  EA  L E+M +  F      YN ++      G++D V ++L E K+    P+V TY 
Sbjct: 551 KIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYA 610

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--------------- 258
           L L      +  E A K F  L   K++   + Y+ L + Y ++                
Sbjct: 611 LLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSR 670

Query: 259 --LP------------------EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
             LP                  ++A    +EM       N   Y++L+  +  +G  D V
Sbjct: 671 GILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIV 730

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
             I  +M S   + N   YT +I    KLG  ++A  + +E        D    N L   
Sbjct: 731 GSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKG 790

Query: 359 YINRNQL 365
           Y    +L
Sbjct: 791 YCKEREL 797


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 148/336 (44%), Gaps = 10/336 (2%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S  A++  + +  +   A  + ++M   GF    + YN M+    S G+L+   ++
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + EL K    P V+TY + + A   +     A + F EL    + PD  +Y+ +     K
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             + ++A   ++ +  R C  + V+Y+ LL  + N    ++  R+ K M+    + N   
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           ++ +ISS  + G   +A N+ +  +    T D    + L++A+    +L++A  +  ++V
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQ 434
           + G  P    +  +     K G  +  L+ F+K   +G      P  R     ++ L   
Sbjct: 369 SDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGC----PPTVRAYNTMFSALWSC 424

Query: 435 GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
           G+   A  ++  +   G    EI YNSL+    + G
Sbjct: 425 GNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDG 460



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 145/328 (44%), Gaps = 9/328 (2%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           LL+   +  K  E+   +E +   GF    +    ++  + ++  L K  ++++ L+   
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
            PDV +YN  ++  +  N  ++A + F  ++     PD ++Y+ +          E A  
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
            + E+ K  C+ + + Y+ L+      G  +E L ++ +++S   + +   Y  +I  + 
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           K G  ++A +      +     D    NILL +++N+++ E  E     +V  G +P   
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307

Query: 386 TWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
           T  +L   + ++G++ +   VLE  K+     +   PD        +   ++G +D A  
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKE-----KGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            L  + + G +   + YN++L T  K G
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFG 390



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 120/264 (45%), Gaps = 1/264 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ + +   +  EA  L +++   G       YN ++      G  D+    ++ L
Sbjct: 203 TYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL 262

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             +  +PDVV+YN+ L +  +++  E  E+   ++  +  +P+ +++S L S + +    
Sbjct: 263 SARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRV 322

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L+ M+++    +  +Y  L+S +   G  D  +   +KM+S     +   Y  +
Sbjct: 323 REAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTI 382

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +++L K G  + A +++++ + +      R  N + +A  +      A    + ++ KGI
Sbjct: 383 LATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGI 442

Query: 381 KPCYTTWELLTWGYLKKGQMEKVL 404
            P   T+  L     + G +++ +
Sbjct: 443 DPDEITYNSLISCLCRDGLVDEAI 466



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 129/295 (43%), Gaps = 9/295 (3%)

Query: 120 IRGLSS------AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           IRG+        A +F  +L  +   PD  S   LL S++   +  + E LM+ M   G 
Sbjct: 243 IRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGC 302

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEK 230
               + ++ +++ +   G++ +   +L+ +K K  +PD  +Y+  ++A   +   + A +
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++      PD ++Y+T+ +   K    + A    +++++  C     AY+++ S   
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALW 422

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           + G K + L +  +M+      ++  Y  +IS L + G  ++A  +  + E+        
Sbjct: 423 SCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVI 482

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             NI+L      +++         +V KG  P  T++ LL  G    G   + +E
Sbjct: 483 SFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAME 537



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 1/155 (0%)

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACA 220
           + EK+ E G       YN M +   S G   K  +M+ E+ +K   PD +TYN  ++   
Sbjct: 398 VFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLC 457

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
                + A    ++++ T+  P  IS++ +     K     +    L  M ++ C  N  
Sbjct: 458 RDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNET 517

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
           +Y  L+      G++ E + +   +  L     D+
Sbjct: 518 SYVLLIEGIAYAGWRAEAMELANSLYRLGVISGDS 552


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 25/303 (8%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T SAL+++  +  K   A  L ++M + G +   + +  +++ +  NG++D + + 
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            Q+ L K   PD+V YN  +       D   A      + +  + PD I+Y+TL   + +
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               E A    KEM++     +RV +S+L+      G   +  R  ++M+    K +D  
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP-----NILLAAYINRNQLEMAESF 371
           YT ++ +  K G+ +    +  E +S     D  VP     N+LL       Q++ A+  
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQS-----DGHVPSVVTYNVLLNGLCKLGQMKNADML 542

Query: 372 YNRLVTKGIKPCYTTWELLTWG----------YLKKGQMEKV--LECFKKAIGSVRKWVP 419
            + ++  G+ P   T+  L  G          Y++K ++  V  L  +K  +  + +   
Sbjct: 543 LDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKSIVNELDRASK 602

Query: 420 DHR 422
           DHR
Sbjct: 603 DHR 605



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +V  +N+ +     + +   A+K F E+ K  + P  +S++TL + Y K+   ++     
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLK 298

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            +MEK   R +   YS+L++        D    ++ +M       ND  +T +I    + 
Sbjct: 299 HQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRN 358

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387
           GE +  +  Y +  S     D  + N L+  +     L  A +  + ++ +G++P   T+
Sbjct: 359 GEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITY 418

Query: 388 ELLTWGYLKKGQMEKVLECFKK----------------------------AIGSVRKWV- 418
             L  G+ + G +E  LE  K+                            A  ++R+ + 
Sbjct: 419 TTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLR 478

Query: 419 ----PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
               PD    T   +   ++GD      LL  +++ GHV + + YN LL    K G+M
Sbjct: 479 AGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 153/327 (46%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD    +++++ + + K   EA 
Sbjct: 40  VRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREAR 99

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +   + Y  +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 100 SLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 159

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 160 GQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNV 219

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++++
Sbjct: 220 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEK 279

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L T    P  T   +L     + G+
Sbjct: 280 LRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHILA----RAGR 335

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 336 IEEATWVFRQAIDAGEVKDITVFERMI 362



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 123/286 (43%), Gaps = 7/286 (2%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265
           SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    KA +
Sbjct: 6   SPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAIS 65

Query: 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325
               +++     + V Y+S+++++       E   +  +M +     +   YT +++  V
Sbjct: 66  IFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYV 125

Query: 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
           +  +F +A +++ E   I    D    NI++  Y      + A+  +  +   GI+P   
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVV 185

Query: 386 TWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           ++  L   Y       + +  F+      + + V  +  +   Y K  E    + A +L+
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEH---EKANNLI 242

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
             +++ G     I Y++++  + K GK+    I+ E+++   +++D
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEID 288



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 71/269 (26%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN---GQLDKVPQML 198
           TC+ ++  Y Q   + EA+ L   M + G     + YN +L +Y      G+   + +++
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           Q  +K+   +VVTYN  +       + E A     E++   I+P+ I+YST+ S++ K+ 
Sbjct: 211 Q--RKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVG 268

Query: 259 -------LPEKAATTLKEMEKRTCRKNRVAY--SSLLS----LYTNMGYKDEVLR----- 300
                  L EK  ++  E+++   +   VAY  + L+S    L   +   D + R     
Sbjct: 269 KLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIH 328

Query: 301 ----------------------------IWKKMMSLFAK-------------MNDAEY-- 317
                                       ++++M+ LF+K             M   EY  
Sbjct: 329 ILARAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYSNIVEVFDKMRGLEYFS 388

Query: 318 -----TCVISSLVKLGEFEKAENIYDEWE 341
                  V+++  KL EFEKA ++Y E +
Sbjct: 389 DSYVIALVLNAYGKLHEFEKANDVYTEMQ 417


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 137/304 (45%), Gaps = 9/304 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +  + K R  + A N F  +  K   P+  TC++L+++     +      L+ +M 
Sbjct: 217 YGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMV 276

Query: 168 ECGFLKCPLPYNHMLNLYISNGQL----DKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
           +   +   +    +++     G +    D V  M Q       PDVVTY   +     ++
Sbjct: 277 DSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQ---SGVEPDVVTYTALIDGHCLRS 333

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           + + A K F  +      P+  SY+TL + Y K+E  +KA    +EM ++    N V Y+
Sbjct: 334 EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYN 393

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+    ++G   + + ++++M++     +   Y  ++  L K    +KA  +    E  
Sbjct: 394 TLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGS 453

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           +   D ++  I++       +LE A   ++ L +KG+KP   T+ ++T G  K+G +++ 
Sbjct: 454 NLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEA 513

Query: 404 LECF 407
            + F
Sbjct: 514 TKLF 517



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 160/399 (40%), Gaps = 39/399 (9%)

Query: 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPD---TCSALLHSYVQNKKSAEAEALMEK 165
           D+A  L  I+K++  S+  +    + D    P    T + L++S+    +   A +++ K
Sbjct: 76  DFAKILTSITKVKRYSTVLSLSRKM-DSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAK 134

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQND 224
           + + G       +  ++      GQ+ +   +  ++  +   PDVV Y   +        
Sbjct: 135 ILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGH 194

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              A +    ++K    PD + Y TL     K     +A     EM  +    N V  +S
Sbjct: 195 TSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNS 254

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE-------YTCVISSLVKLGEFEKAENIY 337
           L+    N+G        WK + +L  +M D++        T V+ +L K G   +A ++ 
Sbjct: 255 LVYALCNLGE-------WKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVV 307

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           D         D      L+  +  R++++ A   ++ +V KG  P   ++  L  GY K 
Sbjct: 308 DMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKI 367

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
            +M+K +  F++     +K +P+    T  YN L     I G  H+       G +   I
Sbjct: 368 ERMDKAMYLFEEM--CRQKLIPN----TVTYNTL-----IHGLCHV-------GRLQDAI 409

Query: 458 YNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKI 496
             +L R     G++P ++  R+  D +  +    K + +
Sbjct: 410 --ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMAL 446



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 105/266 (39%), Gaps = 4/266 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T +AL+  +    +  EA  + + M   G       YN ++N Y    ++DK   +
Sbjct: 317 PDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYL 376

Query: 198 LQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E+ ++   P+ VTYN  +         + A   F E+      PD ++Y  L     K
Sbjct: 377 FEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
               +KA   LK +E      +   Y+ ++      G  ++   ++  + S   K N   
Sbjct: 437 NCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWT 496

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +   L K G  ++A  ++ E +  + + D    N +   ++  N+   A      ++
Sbjct: 497 YNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEML 556

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEK 402
            +G   C  +   L  G L    +++
Sbjct: 557 ARGFS-CDVSTTTLLVGMLSDDGLDQ 581


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A+L      K+  + E LM++M         + +N ++     NG  ++V ++L ++ +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PD+  Y   +     +   E A +    +    + P+ + Y+T+       E  ++
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM ++ C  + V ++ L+  +   G  D V+ + ++M+S     +   YT VI+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  ++A  +     S     +     I+L    +  +   AE   ++++ +G  P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L     KKG +E+ +E  K+ +  V    PD    +   + L + G  + A  
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           LL  + N G   +T IY+S+    ++ G++  +I   + ++   ++ DA
Sbjct: 518 LLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 156/353 (44%), Gaps = 14/353 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M   G 
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ V+Y + L    S      AE+
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +    P+ ++++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  +E L +   M++     N   Y+ +  +L + G   K   ++D  +  +   D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + + A  F+  +V+ G  P  +T+ +L  G   +G  ++  E   + 
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 411 I--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
              G++RK +  H  I+   N  +E G     E+L   + N   +  EI   L
Sbjct: 628 CSRGALRKHLMRHFGIS---NCTQENGKQKCEENLTSAVDNNYKLPIEILGFL 677



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 153/371 (41%), Gaps = 15/371 (4%)

Query: 110 YAVHLDLIS---KIRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAE 158
           +    D++S    ++GL  A+ +   E L D+M   D      T + L+    +N     
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
              ++ +MSE G       Y  +++     G L+   ++L  +      P+VV YN  L 
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLK 329

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              S    + AE+   E+ +     D ++++ L   + +  L ++    L++M    C  
Sbjct: 330 GLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + + Y+++++ +   G  DE + + K M S   K N   YT V+  L   G +  AE + 
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +        +P   N L+     +  +E A     +++  G  P   ++  +  G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G+ E+ LE     +   +   P+  + ++    L  +G ++    +   +++    S  +
Sbjct: 510 GKTEEALELLNVMVN--KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 458 -YNSLLRTYAK 467
            YN+++ +  K
Sbjct: 568 LYNAVISSLCK 578



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 4/293 (1%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +LN     G +D+   +L++L       D+V+YN  L            E+   E+ +
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+ ++++TL     +  L E+    L +M +  C  +   Y++++      G+ + 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              I  +M S   K N   Y  V+  L     +++AE +  E        D    NIL+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            +     ++       ++++ G  P   T+  +  G+ K+G +++ +   K       K 
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK- 423

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            P+    T     L   G    AE L+  +   G     + +N+L+    K G
Sbjct: 424 -PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 166/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSSKTSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    YN +  + +  G+     
Sbjct: 76  LEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L    +  +A  I  E  +      D  +   L++++     L+ A     
Sbjct: 256 ITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKL 431
            ++   +      + LL   + K GQ +K ++   K I       P     L  +AYN +
Sbjct: 316 AMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPM 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEG 417



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 118/289 (40%), Gaps = 13/289 (4%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++ Y + KK  EAE    +M         + Y  
Sbjct: 166 VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++  Y+S  Q+D   ++++E+K     P+ +TY+  L    +      A     E+    
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285

Query: 240 IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           + P D   +  L S + K    + AA  LK M + +       Y  L+  +   G  D+ 
Sbjct: 286 LAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKA 345

Query: 299 LRIWKKMM--------SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
           +++  K++             +  + Y  +I  L   G+  KAE +  +   + G  DP 
Sbjct: 346 VKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQLMKL-GVQDPT 404

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             N L+  +      + A      ++ + +    + + LL   YLKK +
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNE 453


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 7/268 (2%)

Query: 129 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            FE LP     P+  T + ++    +    AEA AL+ +M   G     + YN +++ Y 
Sbjct: 185 LFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYG 240

Query: 187 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G+L++V +++ E++     PDVVTYN  +         E A   F E+K+  +  + +
Sbjct: 241 KCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVV 300

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           ++ST    + K  +  +A     +M  +  + N V Y+ L+      G  D+ L +  +M
Sbjct: 301 TFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEM 360

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           +     +N   YT ++  L K G+  +AE+++   E      +  +   L+  +      
Sbjct: 361 VQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNS 420

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWG 393
           E A S  + +  KG++   + +  L WG
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWG 448



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 124/300 (41%), Gaps = 3/300 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    +  K AEAE +   M   G     L Y  +++ +      ++   +L E+
Sbjct: 371 TYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEM 430

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           K K    DV  Y   +    +    + A+    ++ +  + P+ + Y+ +     K    
Sbjct: 431 KDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKE 490

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A   L++M     R N V Y +L+      G  DE +  + KM+ L  + N   YT +
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTAL 550

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K G  +KA  + DE      + D  V   L+  ++ +  L+ A +   +++  G+
Sbjct: 551 VDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL 610

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +     +    WG+     +++  E   + I +     PD  +     NK ++ G+++ A
Sbjct: 611 QLDLYGYTCFVWGFCNLNMIQEAREVLSEMIEN--GITPDAVVYNCLINKCQKLGNMEEA 668


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 155/369 (42%), Gaps = 19/369 (5%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG----------PDTC--SALLHSYVQNKKSA 157
           + + ++ + K R +  A   FE    KM+G          PDT   + L+    +  +  
Sbjct: 190 FGILINHLCKFRRIDDALEVFE----KMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQE 245

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWL 216
           EA  LM KM           +N ++N Y  +G+++   ++  E++     P+V+T N  +
Sbjct: 246 EALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLV 305

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                 N   TA + F  +++  +  + ++Y+   + +  +    KA   L EM K  C 
Sbjct: 306 DGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCF 365

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + V Y +L+      G  D+   +  K+      ++   Y  +IS   K  + ++A+  
Sbjct: 366 PDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEW 425

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV-TKGIKPCYTTWELLTWGYL 395
            +E E      D    N L++ +      ++A  F  ++   +G+ P   T+  L   Y 
Sbjct: 426 LNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYC 485

Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-S 454
               +++ ++ FK+      K  P+  +     + L +Q  ++ A  LL  ++  G + +
Sbjct: 486 LNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPN 545

Query: 455 TEIYNSLLR 463
           T  YNS+ +
Sbjct: 546 TTTYNSIFK 554



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 114 LDLISKIRGLSSAENFFENLPDK-MRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   +S+A  FF  +  K ++G + T +  ++++       +A   +++MS+ G 
Sbjct: 305 VDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGC 364

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y  ++      G+LD    ++ +LK+     D V YN+ ++    +N  + A++
Sbjct: 365 FPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQE 424

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRTCRKNRVAYSSLLSLY 289
              E++   + PD ++Y+TL S + K+   + A   +K+M E+         Y +L+  Y
Sbjct: 425 WLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAY 484

Query: 290 TNMGYKDEVLRIWKKMMSLFAKM--NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
                 DE ++I+K+M ++ +K+  N   Y  +I SL K  +   A ++ D+ +      
Sbjct: 485 CLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMP 544

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           +    N +  A  ++N L+ A    +R+V +   P Y T E+LT      G++ K+
Sbjct: 545 NTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITKL 600



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 9/245 (3%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME------KRTCRKNRVAYSSLLS 287
           ++K   I P  I++  L +   K    + A    ++M+      K     + + Y++L+ 
Sbjct: 177 KMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLID 236

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
               +G ++E L +  KM S       A + C+I+   + GE E A  +++E E+     
Sbjct: 237 GLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEP 296

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           +    N L+      N++  A  F+  +  KG+K    T+ +    +     M K +E  
Sbjct: 297 NVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFL 356

Query: 408 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYA 466
            +   S     PD  +       L + G +D A  ++  L+ AG     + YN L+  + 
Sbjct: 357 DEM--SKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFC 414

Query: 467 KAGKM 471
           K  K+
Sbjct: 415 KKNKL 419


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 47  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREAR 106

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 107 SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 166

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 167 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 226

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 227 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQK 286

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 287 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 342

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 343 IEEATYVFRQAIDAGEVKDITVFERMI 369



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 51/290 (17%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++  SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    
Sbjct: 9   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYS 68

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA +    ++      + VAY+++++++       E   +  +M +     N   Y+ ++
Sbjct: 69  KAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 128

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           +  V+  +F +A +++ E   I    D    NI++  Y      + A+  +  +   GI+
Sbjct: 129 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 188

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    + A
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH---EKA 245

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            +L+  +++ G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 246 NNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 228 TYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 288 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 343

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 344 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIV 403

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 404 LNAYGKLQEFDKANDVYMEMQEVG 427


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 152/358 (42%), Gaps = 8/358 (2%)

Query: 84  LKRYKHA----LEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MR 138
           LKR+++A        EW E Q         Y + ++ ++KIR      +    +  K M 
Sbjct: 51  LKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGML 110

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
             +T   ++  Y +  K  EA      M +   +     +N +L+    +  + K  ++ 
Sbjct: 111 NVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIF 170

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
             +K    PD  +Y++ L       +   A + F E+ +   DPD ++Y  +  +  K  
Sbjct: 171 DAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAG 230

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             ++A   +KEM+   CR     YS L+  Y      ++ +  + +M     K +   Y 
Sbjct: 231 RVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYN 290

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I +  K+ +F+    +  E ES     + R  N+++++ I + Q + A   + R++ K
Sbjct: 291 ALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMI-K 349

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
             +P   T+ ++   + +K ++E  L+ +K      +++VP     +A    L E+ +
Sbjct: 350 LCEPDADTYTMMIKMFCEKNELEMALKIWKYM--KSKQFVPSMHTFSALIKGLCEKDN 405



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 130/312 (41%), Gaps = 12/312 (3%)

Query: 100 QYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PD--TCSALLHSYVQNK 154
           +YD+      +   L  + K   +  A+  F    D M+G   PD  + S LL  + +  
Sbjct: 140 KYDVVPNLAAFNGLLSALCKSNNVRKAQEIF----DAMKGQFVPDEKSYSILLEGWGKAP 195

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
               A  +  +M E G     + Y  M+++    G++D+  ++++E+   N  P    Y+
Sbjct: 196 NLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYS 255

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           + +     ++  E A   FLE+ K  I  D ++Y+ L   + K+   +     LKEME  
Sbjct: 256 VLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESN 315

Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
               N    + ++S     G  D   R++ +M+ L     D  YT +I    +  E E A
Sbjct: 316 GVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADT-YTMMIKMFCEKNELEMA 374

Query: 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393
             I+   +S          + L+     ++    A      ++ KGI+P   T+  L   
Sbjct: 375 LKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQL 434

Query: 394 YLKKGQMEKVLE 405
            +K+G+ E VL+
Sbjct: 435 LIKEGR-EDVLK 445



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 4/237 (1%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           +V  L K  R   A+EV + M++  + +  S  Y+V +        +  A + F  +  K
Sbjct: 222 MVDVLCKAGRVDEAVEVVKEMDVG-NCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKK 280

Query: 137 MRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
               D  +  AL+ ++ +  K      ++++M   G        N +++  I  GQ D+ 
Sbjct: 281 GIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRA 340

Query: 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            ++   + K   PD  TY + +     +N+ E A K +  +K  +  P   ++S L    
Sbjct: 341 FRVFCRMIKLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGL 400

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
            + +   KA   ++EM ++  R +R+ +  L  L    G +++VL+   + M+L  K
Sbjct: 401 CEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEG-REDVLKFLHEKMNLLVK 456


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 6/349 (1%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183
           A+  FE++      P   T + LL    +  K   A AL ++M +       + +N ++ 
Sbjct: 29  AQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD-VISFNILVT 87

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
                G+++   +  +++    SP+V+TY++ +      N    A +    +K     PD
Sbjct: 88  GLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 147

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            I+Y+ L     K      A   L+EM    C  N V Y+SLL          + L + +
Sbjct: 148 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 207

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
            M       N   Y  +I  L K+G  + A  +  +     GT D  + N+L+      +
Sbjct: 208 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKAD 267

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
           Q++ + +   R V+ GIKP   T+  + +G  +  ++++   C        R   PD  L
Sbjct: 268 QVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA--CRLLLYVKSRGCPPDVIL 325

Query: 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            +   + L + G +D A  L   +   G       Y++L+    KAG++
Sbjct: 326 YSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 121/287 (42%), Gaps = 5/287 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + + R +S A     ++  +   P+  T   L+    +  +  +A A++  M + G    
Sbjct: 193 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 252

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + YN ++N      Q+D+   +L+  +     PDVVTY+  +      N  + A +  L
Sbjct: 253 LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL 312

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
            +K     PD I YSTL     K    ++A    + M    C  + V YS+L+      G
Sbjct: 313 YVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAG 372

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
             DE   +  +M+ +    +   Y  +I  L  L   ++A  + +E E  +        N
Sbjct: 373 RVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYN 432

Query: 354 ILLAAYINRNQLEMAE-SFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           IL+       +++ A   ++  ++  G+ P + T+ +L  G LKK +
Sbjct: 433 ILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEG-LKKSK 478



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 151/360 (41%), Gaps = 13/360 (3%)

Query: 52  KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
           +R+ A+         H V  +  N +V  L +  + + ALE    M+ +    +++  Y+
Sbjct: 62  ERAMALFQEMLDRRSHDVISF--NILVTGLCRAGKIETALEFFRKMDDRCSPNVIT--YS 117

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSEC 169
           V +D + K   +S A    E++  +   PD  T + L+    +  K A A  ++ +M + 
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
           G +   + YN +L+      ++     +++++  +  +P+VVTY   +         + A
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
                ++      PD + Y+ L +   K +  +++   L+       + + V YSS++  
Sbjct: 238 CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 297

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG- 347
                  DE  R+   + S     +   Y+ +I  L K G+ ++A   +D +E ++G G 
Sbjct: 298 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA---FDLYEVMTGDGC 354

Query: 348 --DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    + L+       +++ A     R+V  G  P   T+  L  G      +++ +E
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 5/266 (1%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P+VVTYN  +      N+ + A++ F  +K  +  P  ++Y+TL     +    E+A   
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
            +EM  R    + ++++ L++     G  +  L  ++KM    +  N   Y+ +I  L K
Sbjct: 68  FQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSP-NVITYSVLIDGLCK 125

Query: 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
                +A  + +  ++   + D     IL+      +++  A      ++  G  P   T
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
           +  L  G  +  ++   L   +    + R   P+        + L + G +  A  +L  
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDM--TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 243

Query: 447 LRNAGHV-STEIYNSLLRTYAKAGKM 471
           + + G      IYN L+    KA ++
Sbjct: 244 MIDKGGTPDLMIYNMLINGLCKADQV 269



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 22/204 (10%)

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++    +P+ ++Y++L     K   P++A    + M+   C  + V Y++LL        
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLL-------- 52

Query: 295 KDEVLRIWK--KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
            D + R  K  + M+LF +M D     VIS  + +    +A  I    E      D   P
Sbjct: 53  -DGLFRTGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSP 111

Query: 353 N-----ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           N     +L+      N++  A      +  +G  P   T+ +L  G  K+ ++    E  
Sbjct: 112 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVL 171

Query: 408 KKAIGSVRKWVPDHRLITAAYNKL 431
           ++ + +    VP+  L+T  YN L
Sbjct: 172 REMLDA--GCVPN--LVT--YNSL 189


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 167/370 (45%), Gaps = 16/370 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           +Z   +  +Y  + ++    K   +  AL   + ME       V GD  ++ +LI   R 
Sbjct: 1   RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDR----VPGDLVLYSNLIELSRK 56

Query: 123 L---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
           L   S A + F  L      PD  +  ++++ + + K   EA +L+ +M   G     + 
Sbjct: 57  LCDYSKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVS 116

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           Y+ +L +Y+ N +  +   +  E+++   S D+ T N+ +      +  + A+K F  ++
Sbjct: 117 YSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMR 176

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  I+P+ ISY+TL  +Y   EL  +A    + M+++   +N V Y++++ +Y      +
Sbjct: 177 KIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           +   + ++M +   + N   Y+ +IS   K+G+ ++A  ++ +  S     D  +   ++
Sbjct: 237 KANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMI 296

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSV 414
            AY     +  A+   + L      P  T   +L       G++E+    F++AI  G V
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPDNIPRDTAXHILAGA----GRIEEATWVFRQAIDAGEV 352

Query: 415 RKWVPDHRLI 424
           +      R+I
Sbjct: 353 KDITVFSRMI 362


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 153/350 (43%), Gaps = 17/350 (4%)

Query: 133 LPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISN 188
           +P+    PDT S   +L S  ++ +S  A  L+  M +      P  + YN +++ +   
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 189 GQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G++ K   +  E+ ++   PDVVTY+ ++ A       + AE    ++     +PD ++Y
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           + +   Y  +   ++ A   +EM +R    +    +S +S     G   E    +  M +
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              K +   Y+ ++      G      N+++  E      D  V NIL+ AY  R  ++ 
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
           A   + ++  +G+ P   T+  +   + + G++   ++ F + I    K  PD    T  
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLK--PD----TIV 474

Query: 428 YNKLEE----QGDIDGAEHLLVTLRNAG--HVSTEIYNSLLRTYAKAGKM 471
           YN L +     G++  A+ L+  + + G    +T  +NS++ +  K G++
Sbjct: 475 YNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRV 524



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  TC++ + S  ++ KS EA    + M+  G     + Y+ +L+ Y + G +  +  +
Sbjct: 330 PDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNL 389

Query: 198 LQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
              ++ N    D   YN+ + A   +   + A   F ++++  + PD  +Y T+ + + +
Sbjct: 390 FNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSR 449

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDA 315
           M     A     +M     + + + Y+SL+  +   G   +   +  +MMS    + N  
Sbjct: 450 MGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTV 509

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
            +  +I+SL K G   +A++I+D    I    D    N L+  Y    ++E A    + +
Sbjct: 510 FFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAM 569

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           ++ GI+P   T+  L  GY + G+++  L  F++ +
Sbjct: 570 ISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREML 605



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 8/296 (2%)

Query: 201 LKKNTSPDVVTYNLWLAA-CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           LK     DV+  N+ L   C ++   +        + +  ++PD ISYST+     +   
Sbjct: 146 LKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSR 205

Query: 260 PEKAATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
            ++A   L  M K++  C  N V+Y++++  +   G   +   ++ +MM      +   Y
Sbjct: 206 SQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTY 265

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
           +  I +L K    +KAE +  +  S     D    N ++  Y    Q +     +  +  
Sbjct: 266 SSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTR 325

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
           +G+ P   T         K G+ ++  E F        K  PD    +   +    +G +
Sbjct: 326 RGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHK--PDLVTYSVLLHGYAAEGYV 383

Query: 438 DGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
               +L  ++   G V+   +YN L+  Y K G M   ++I  +MQ+  V  DA T
Sbjct: 384 VDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWT 439



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 148/367 (40%), Gaps = 7/367 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K   +  A   F  + ++   PD  T   ++ ++ +  + A+A     +M 
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDK 225
             G     + YN ++  +  +G L K  +++ E+  +    P+ V +N  + +   +   
Sbjct: 465 AMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRV 524

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A+  F  +      PD I++++L   Y  +   EKA   L  M       + V YS+L
Sbjct: 525 VEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSAL 584

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           L  Y   G  D+ L ++++M+S   K     Y  ++  L   G    A+ +  E      
Sbjct: 585 LDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGT 644

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           T D     I+L      N  + A + + +L    +K        +     K  + E+  E
Sbjct: 645 TMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANE 704

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 464
            F     S    VP+          L ++G ++ A+++   +  +G   S+ + N+++R 
Sbjct: 705 LFDSI--SATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRV 762

Query: 465 YAKAGKM 471
             + G++
Sbjct: 763 LLEKGEI 769


>gi|357491823|ref|XP_003616199.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355517534|gb|AES99157.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 872

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 3/233 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +    K+R  ++A   +  +  +   PDT  C+ +L  Y + ++  EA AL E+  
Sbjct: 536 YCSQIKGFYKLRQFANALKVYSIMQKRGIRPDTIACNHILSIYCRKREFNEALALSEEFR 595

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           + G    P  YN  +N        +K  Q+L   LK+N  P VV Y+  ++  A Q + +
Sbjct: 596 DHGVSLNPYSYNEFINKLCRESFPEKALQLLPVMLKRNVLPGVVNYSTLISCFAKQTNSK 655

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K F  + K  I  +  +++ L  L I+    +KA    ++MEKR    +++ Y++L+
Sbjct: 656 KAVKLFTRMTKVGITFNIKTHTALIDLCIRNCKIDKACDLFEDMEKRGVHPDQITYNTLI 715

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           + + N G       ++ +M+      N   Y+C I++  KL   ++A   YDE
Sbjct: 716 AAFCNTGEMIIAKTLFDRMLQEGCSPNVVTYSCFINAYWKLDMRDQAHKWYDE 768



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 5/254 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD---KVPQMLQELK 202
           L+  + +      A  L+E+M    F      Y   +  +    Q     KV  ++Q  K
Sbjct: 504 LVDGFCREGDMVSAGKLLEEMGSNNFAPSAFCYCSQIKGFYKLRQFANALKVYSIMQ--K 561

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   PD +  N  L+    + +   A     E +   +  +  SY+   +   +   PEK
Sbjct: 562 RGIRPDTIACNHILSIYCRKREFNEALALSEEFRDHGVSLNPYSYNEFINKLCRESFPEK 621

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L  M KR      V YS+L+S +       + ++++ +M  +    N   +T +I 
Sbjct: 622 ALQLLPVMLKRNVLPGVVNYSTLISCFAKQTNSKKAVKLFTRMTKVGITFNIKTHTALID 681

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
             ++  + +KA +++++ E      D    N L+AA+ N  ++ +A++ ++R++ +G  P
Sbjct: 682 LCIRNCKIDKACDLFEDMEKRGVHPDQITYNTLIAAFCNTGEMIIAKTLFDRMLQEGCSP 741

Query: 383 CYTTWELLTWGYLK 396
              T+      Y K
Sbjct: 742 NVVTYSCFINAYWK 755


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 125/272 (45%), Gaps = 6/272 (2%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           S LL +  +     +A  L+++M   G     + YN ++N   S G + +  ++L  L  
Sbjct: 199 SILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPS 258

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               PD VTY   L +  S    E A+K   ++      PD ++++ + +   +     +
Sbjct: 259 YGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGR 318

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN----DAEYT 318
           A   L +M +  C  + + YSS++         DE +++ K++++     N       + 
Sbjct: 319 ATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFN 378

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN-QLEMAESFYNRLVT 377
            +I+SL + G F++A  + DE        D    N ++  ++ ++ + E A    N +V+
Sbjct: 379 TIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVS 438

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            G+ P  TT++ L +G  ++ +ME+ +  F++
Sbjct: 439 NGLCPDTTTYKSLAFGLSREDEMERAIGMFRR 470



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 136/326 (41%), Gaps = 8/326 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           C+ L+     + + A+AE ++E +     +   + YN M+N Y   G +D   +M+  + 
Sbjct: 99  CNILIKKLCADGRVADAERVVEALGPSATI---ITYNTMVNGYCRAGNIDAARRMIDSVP 155

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              +PD  TYN  + A   +     A   F ++      P  ++YS L     K    ++
Sbjct: 156 --FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQ 213

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  + C  + V Y+ L++   + G   E L++   + S   K +   YT V+ 
Sbjct: 214 AVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLK 273

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           SL     +E+A+ +  +  S     D    N ++ +   +  +  A     ++   G  P
Sbjct: 274 SLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTP 333

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--RKWVPDHRLITAAYNKLEEQGDIDGA 440
              T+  +  G  K+ ++++ ++  K+ +  +  +  +PD          L ++G  D A
Sbjct: 334 DIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRA 393

Query: 441 EHLLVTLRNAGHV-STEIYNSLLRTY 465
             ++  +   G +     YN ++  +
Sbjct: 394 IKVVDEMSEHGCIPDITTYNCIVDGF 419


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 152/390 (38%), Gaps = 43/390 (11%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
           ++K +E+G        N ++  L K +R   A+     M  Q  I      Y+  L    
Sbjct: 199 LKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ-GIPPNVVTYSSILHGFC 257

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
            +  L+ A + F+ +  +   P+T +   L+    +     EA  + E M+E G      
Sbjct: 258 NLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAY 317

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-AACASQNDKETAEKAFLE 234
            Y+ +++ Y    Q+D+  ++   +  K  +P V  YN+ +   C S+   E A+    E
Sbjct: 318 TYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE-AKTLLSE 376

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +    + PD ++YSTL   + +   P+ A    KEM       + + YS LL      G+
Sbjct: 377 MYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGH 436

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            DE  R+ K M                       + E    IY               NI
Sbjct: 437 LDEAFRLLKAMQE--------------------SKIEPHICIY---------------NI 461

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+    N  +LE A   ++ L  KGI+P   T+ ++  G LK+G   +  E F+K +  V
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMV--V 519

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
              +P+      A       GD   A  L+
Sbjct: 520 NGCLPNSCTYNVAIQGFLRNGDPSNAVRLI 549



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 141/334 (42%), Gaps = 8/334 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T   LL+      K  +A  L +++ + GF    + Y  ++      G      Q+L+++
Sbjct: 143 TFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +K   PDVV YN  + +         A   F E+    I P+ ++YS++   +  +   
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQL 262

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            +A +  K+M  R    N V ++ L+      G   E  R+++ M     + +   Y+ +
Sbjct: 263 NEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSAL 322

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +       + ++A+ ++D           RV NIL+  +    +L  A++  + +  + +
Sbjct: 323 MDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL 382

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G+ + G+ +   + FK+        +PD    +   + L + G +D A
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS--YGLLPDSITYSILLDGLCKHGHLDEA 440

Query: 441 EHLLVTLRNA---GHVSTEIYNSLLRTYAKAGKM 471
             LL  ++ +    H+   IYN L++     GK+
Sbjct: 441 FRLLKAMQESKIEPHIC--IYNILIQGMCNFGKL 472



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 1/239 (0%)

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
           A + + KM + G     + +  +LN   S  ++    ++  E+ K   +P ++TY   + 
Sbjct: 125 AFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIK 184

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                     A +   ++++    PD ++Y+T+     K     +A     EM  +    
Sbjct: 185 GLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPP 244

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           N V YSS+L  + N+G  +E   ++K+M+      N   +T ++  L K G   +A  ++
Sbjct: 245 NVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           +         D    + L+  Y  ++Q++ A+  ++ +V KG  P    + +L  G+ K
Sbjct: 305 EMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK 363



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 113/283 (39%), Gaps = 5/283 (1%)

Query: 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           D V    Q L     P VV +N  L +   +    T      ++  + I P+  + + L 
Sbjct: 52  DAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILI 111

Query: 252 SL--YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           +   +   +    A + L +M K   +   V + +LL+   +     + ++++ ++  + 
Sbjct: 112 NCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG 171

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              +   YT +I  L K+G    A  +  + E      D    N ++ +     +   A 
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAM 231

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
            F++ +V +GI P   T+  +  G+   GQ+ +    FK+ IG  R  +P+    T   +
Sbjct: 232 YFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG--RNVMPNTVTFTILVD 289

Query: 430 KLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
            L ++G I  A  +  +   N        Y++L+  Y    +M
Sbjct: 290 GLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQM 332



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 38/285 (13%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           + + +D + K   +  A   FE + +    PD  T SAL+  Y    +  EA+ L + M 
Sbjct: 284 FTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMV 343

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKV-------------------------------PQ 196
             GF      YN ++N +  + +L++                                PQ
Sbjct: 344 GKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQ 403

Query: 197 MLQELKKNTS-----PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           + Q+L K        PD +TY++ L         + A +    ++++KI+P    Y+ L 
Sbjct: 404 VAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILI 463

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
                    E A      +  +  + + V Y+ ++S     G  +E   +++KM+     
Sbjct: 464 QGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCL 523

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
            N   Y   I   ++ G+   A  + +E      + D     +LL
Sbjct: 524 PNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 42/228 (18%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y + ++   K R L+ A+     + D+   PDT   S L+  + Q  +   A+ L ++M 
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMC 413

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------- 202
             G L   + Y+ +L+    +G LD+  ++L+ ++                         
Sbjct: 414 SYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLE 473

Query: 203 -----------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
                      K   P VVTY + ++    +     A + F ++      P+  +Y+   
Sbjct: 474 AARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAI 533

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             +++   P  A   ++EM  R    +   +  LL L +N    DE++
Sbjct: 534 QGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESN----DEII 577


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 146/340 (42%), Gaps = 14/340 (4%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134
           N ++  L K+ R +  L + E M  Q      +  Y   +D   K   + +A   F+ + 
Sbjct: 384 NTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMN 443

Query: 135 DKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
                P+  T + L+    ++ +   A     +M   G     + Y  ++  + +   ++
Sbjct: 444 KDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIE 503

Query: 193 KVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           K  ++  E L+   SPD + Y   ++  +     + A     ++K+    PD +S++ L 
Sbjct: 504 KAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLI 563

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
           + + +    ++A   LKEME    + + V Y++L+S ++  G      R+ KKM+     
Sbjct: 564 NGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLV 623

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQL 365
                Y  +I +    G  ++A  I+ +  S S     +VP      NIL+ +   +NQ+
Sbjct: 624 PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTS-----KVPPNTVIYNILINSLCRKNQV 678

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           ++A S  + +  KG+KP   T+  +  G  +K  + K  E
Sbjct: 679 DLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFE 718



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 114 LDLISKIRGLSSAENFFENLPDK-MRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D + K   ++ A  FF  +  K ++G   T +AL+ ++       +A  L ++M E G 
Sbjct: 458 VDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGC 517

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
               + Y  +++     G+LD+   +L ++K+   SPD+V++N+ +     +N  + A +
Sbjct: 518 SPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYE 577

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              E++   I PD ++Y+TL S + K      A   +K+M K       V Y +L+  Y 
Sbjct: 578 MLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYC 637

Query: 291 NMGYKDEVLRIWKKMMSLF-AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
             G  DE ++I++ M S      N   Y  +I+SL +  + + A ++ D+ +      + 
Sbjct: 638 LNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNT 697

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
              N +      +N L  A    +R+      P Y T E+LT
Sbjct: 698 NTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILT 739



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 149/343 (43%), Gaps = 11/343 (3%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMS---ECGFLKCP--LPYNHMLNLYISNGQLDKVPQ 196
           T   L++   + ++  EA  + EKM+     GFL  P  + YN +++     G+ ++   
Sbjct: 342 TFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLG 401

Query: 197 MLQELKKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +++ ++      P+ VTYN  +      +  E A + F ++ K  + P+ ++ +TL    
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K      A     EM+ +  + N V Y++L+  + N+   ++ + ++ +M+      + 
Sbjct: 462 CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y  +IS L + G+ ++A  +  + +    + D    N+L+  +  +N+L+ A      
Sbjct: 522 IVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKE 581

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           +   GIKP   T+  L   + K G         KK +      VP      A  +     
Sbjct: 582 MENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVK--EGLVPTVVTYGALIHAYCLN 639

Query: 435 GDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMPLII 475
           G++D A  +   + +   V  +T IYN L+ +  +  ++ L +
Sbjct: 640 GNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLAL 682



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 188 NGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
           +G+ D+   +L  L K     +  + N  L A     + +       E+K+  I P+ ++
Sbjct: 283 SGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVT 342

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRT-----CRKNRVAYSSLLSLYTNMGYKDEVLRI 301
           +  L +   K    ++A    ++M            + + Y++L+     +G ++E L +
Sbjct: 343 FGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGL 402

Query: 302 WKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
            ++M S    M N   Y C+I    K    E A  ++D+        +    N L+    
Sbjct: 403 VERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMC 462

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD 420
              ++  A  F+N +  KG+K    T+  L   +     +EK +E F + + +     PD
Sbjct: 463 KHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA--GCSPD 520

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAGKM 471
             +     + L + G +D A  +L  ++ AG  S +I  +N L+  + +  K+
Sbjct: 521 AIVYYTLISGLSQAGKLDRASFVLSKMKEAG-FSPDIVSFNVLINGFCRKNKL 572


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 6/349 (1%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           +A+L      K+  + E LM++M         + +N ++     NG  ++V ++L ++ +
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  +PD+  Y   +     +   E A +    +    + P+ + Y+T+       E  ++
Sbjct: 280 HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKE 339

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM ++ C  + V ++ L+  +   G  D V+ + ++M+S     +   YT VI+
Sbjct: 340 AEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K G  ++A  +     S     +     I+L    +  +   AE   ++++ +G  P
Sbjct: 400 GFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPP 459

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  L     KKG +E+ +E  K+ +  V    PD    +   + L + G  + A  
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTEEALE 517

Query: 443 LLVTLRNAG-HVSTEIYNSLLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           LL  + N G   +T IY+S+    ++ G++  +I   + ++   ++ DA
Sbjct: 518 LLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 156/353 (44%), Gaps = 14/353 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M   G 
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ V+Y + L    S      AE+
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +    P+ ++++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  +E L +   M++     N   Y+ +  +L + G   K   ++D  +  +   D  
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + + A  F+  +V+ G  P  +T+ +L  G   +G  ++  E   + 
Sbjct: 568 LYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627

Query: 411 I--GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
              G++RK +  H  I+   N  +E G     E+L   + N   +  EI   L
Sbjct: 628 CSRGALRKHLMRHFGIS---NCTQENGKQKCEENLTSAVDNNYKLPIEILGFL 677



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/371 (19%), Positives = 153/371 (41%), Gaps = 15/371 (4%)

Query: 110 YAVHLDLIS---KIRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAE 158
           +    D++S    ++GL  A+ +   E L D+M   D      T + L+    +N     
Sbjct: 210 FGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFER 269

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLA 217
              ++ +MSE G       Y  +++     G L+   ++L  +      P+VV YN  L 
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLK 329

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
              S    + AE+   E+ +     D ++++ L   + +  L ++    L++M    C  
Sbjct: 330 GLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + + Y+++++ +   G  DE + + K M S   K N   YT V+  L   G +  AE + 
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
            +        +P   N L+     +  +E A     +++  G  P   ++  +  G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G+ E+ LE     +   +   P+  + ++    L  +G ++    +   +++    S  +
Sbjct: 510 GKTEEALELLNVMVN--KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAV 567

Query: 458 -YNSLLRTYAK 467
            YN+++ +  K
Sbjct: 568 LYNAVISSLCK 578



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 4/293 (1%)

Query: 179 NHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +LN     G +D+   +L++L       D+V+YN  L            E+   E+ +
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
               P+ ++++TL     +  L E+    L +M +  C  +   Y++++      G+ + 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357
              I  +M S   K N   Y  V+  L     +++AE +  E        D    NIL+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417
            +     ++       ++++ G  P   T+  +  G+ K+G +++ +   K       K 
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK- 423

Query: 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
            P+    T     L   G    AE L+  +   G     + +N+L+    K G
Sbjct: 424 -PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 120 IRG-LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           +RG +  A   F+++  +   P   T S LL +  +     +A  L+++M   G     +
Sbjct: 174 VRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIV 233

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAA-CASQNDKETAEKAFLE 234
            YN ++N   + G +D+   +L +L  +   PD VTY   L + C S+  KE  E+ F E
Sbjct: 234 TYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEV-EELFAE 292

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           +   K  PD ++++T+ +   +  L ++A   +  M +  C  + V YSS+L    ++G 
Sbjct: 293 MASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGR 352

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            D+ + +  ++ S   K +   YT V+  L  + ++E AE +  E        D    N 
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           ++A+   +  ++ A     ++   G  P   T+  +  G   +  ++  +E
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAME 463



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 105/494 (21%), Positives = 193/494 (39%), Gaps = 30/494 (6%)

Query: 3   LRSLGATLAAARVFSTKAAKITTLGLATEKKG--AGGRDTLGRRLLS--------LVYAK 52
           L S G    A RVF+T  A  T +   T   G    GR    RRL+S          +  
Sbjct: 108 LCSGGRVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNP 167

Query: 53  RSAAITMRKWKEEGHTVHKYELNR-----------IVRELRKLKRYKHALEVCEWMELQ- 100
              A+ +R    +   V    L+R           ++    K   Y+ A+ + + M  + 
Sbjct: 168 LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKG 227

Query: 101 YDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAE 158
            +  +V+  Y V ++ +     +  A N   +LP     PD  T + +L S   +++  E
Sbjct: 228 CEPDIVT--YNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKE 285

Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDVVTYNLWLA 217
            E L  +M+        + +N ++      G +D+  +++  + ++   PD+VTY+  L 
Sbjct: 286 VEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILD 345

Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277
                   + A +    LK     PD I+Y+T+      +E  E A   + EM    C  
Sbjct: 346 GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPP 405

Query: 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337
           + V ++++++     G  D  +++ ++M       +   Y  +I  L      + A  + 
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELL 465

Query: 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
              +S     D    N LL    + ++ E AE     ++     P  TT+  +     +K
Sbjct: 466 SNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQK 525

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           G + + +E  K  I +    +P+        + L + G    A  LL  + N G      
Sbjct: 526 GLLLQAIETLK--IMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTN-GTPDLIT 582

Query: 458 YNSLLRTYAKAGKM 471
           YN+++    KAGKM
Sbjct: 583 YNTVISNITKAGKM 596



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 141/351 (40%), Gaps = 10/351 (2%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
           C+ L+       + A+AE +   +   G     + YN M+N Y   G+++   +++  + 
Sbjct: 101 CNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISGMP 157

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               PD  T+N  + A   +     A   F ++      P  ++YS L     K     +
Sbjct: 158 --FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQ 215

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A   L EM  + C  + V Y+ L++   N G  DE L I   + S   K +   YT V+ 
Sbjct: 216 AMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLK 275

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           SL     +++ E ++ E  S     D    N ++ +   +  ++ A    + +   G  P
Sbjct: 276 SLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIP 335

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
              T+  +  G    G+++  +E   +      K  PD    T     L      + AE 
Sbjct: 336 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCK--PDTIAYTTVLKGLCSIEQWEHAEE 393

Query: 443 LLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 490
           L+  +  +     E+ +N+++ +  + G +   + +VE+M ++    D  T
Sbjct: 394 LMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVT 444


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 139/317 (43%), Gaps = 12/317 (3%)

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAAC 219
           +++ KM + G     + +N ++N   + G++ +  ++  E+ K+   P+V++Y   +   
Sbjct: 149 SVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
               +   A   F ++++    P+ ++YST+     K  L   A   L EM +R    N 
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
             Y+S++  + N+G  +E  R++K+M+      N   +T ++  L K G   +A  +++ 
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
                   D    N L+  Y  +  +  A+  +  ++ KG  P   ++ +L  GY K  +
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388

Query: 400 MEK----VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVS 454
           M++    + E + KA+       PD    +     L + G    A +L   + + G H +
Sbjct: 389 MDEAKSLLAEMYHKALN------PDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPN 442

Query: 455 TEIYNSLLRTYAKAGKM 471
              Y  LL  + K G +
Sbjct: 443 LVTYVILLDGFCKHGHL 459



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 117/279 (41%), Gaps = 1/279 (0%)

Query: 135 DKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
           D M    T + L+    +    +EA  + E M+E G       YN +++ Y     +++ 
Sbjct: 298 DVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEA 357

Query: 195 PQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            ++ +  ++K  +P   +YN+ +         + A+    E+    ++PD ++YSTL   
Sbjct: 358 KKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQG 417

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
             ++  P++A    KEM       N V Y  LL  +   G+ DE L++ K M     + N
Sbjct: 418 LCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPN 477

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              YT +I  +   G+ E A+ ++ +        D R   +++   +     + A   + 
Sbjct: 478 IVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFR 537

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
           ++   G  P   ++ ++  G+L+       +    + +G
Sbjct: 538 KMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVG 576



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 25/276 (9%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +V + N+ +      N  + +     ++ K  I PD I+++ L +        ++A    
Sbjct: 127 NVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELF 186

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
            EM KR    N ++Y+++++     G     + ++KKM     K N   Y+ +I SL K 
Sbjct: 187 NEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCK- 245

Query: 328 GEFEKAENIYDEWESISGTGDPRVP------NILLAAYINRNQLEMAESFYNRLVTKGIK 381
              ++  N  D  E +S   +  +P      N ++  + N  QL  A   +  +V + + 
Sbjct: 246 ---DRLVN--DAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVM 300

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV-PDHRLITAAYNKLEE----QGD 436
           P   T+ +L  G  K+G + +    F+       K V PD     + YN L +    Q  
Sbjct: 301 PNTVTFTILVDGLCKEGMVSEARLVFETM---TEKGVEPD----ISTYNALMDGYCLQRL 353

Query: 437 IDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKM 471
           ++ A+ +  + +R         YN L+  Y K+ +M
Sbjct: 354 MNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRM 389



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/446 (18%), Positives = 173/446 (38%), Gaps = 60/446 (13%)

Query: 68  TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS---KIRGLS 124
           T + Y LN ++  L +L     ++ V   M      KL      +H D I+    I GL 
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKM-----FKL-----GIHPDAITFNALINGLC 174

Query: 125 S------AENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
           +      A   F  +  +   P+  S   +++   +   ++ A  + +KM + G     +
Sbjct: 175 NEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVV 234

Query: 177 PYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y+ +++    +  ++   + L E+ ++   P+V TYN  +    +      A + F E+
Sbjct: 235 TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
               + P+ ++++ L     K  +  +A    + M ++    +   Y++L+  Y      
Sbjct: 295 VGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 296 DEVLRIWKKMM----------------------------SLFAKM-------NDAEYTCV 320
           +E  ++++ M+                            SL A+M       +   Y+ +
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L +LG  ++A N++ E  S     +     ILL  +     L+ A      +  K +
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P    + +L  G    G++E   E F K  G   +  PD R  T     L ++G  D A
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR--PDIRTYTVMIKGLLKEGLSDEA 532

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTY 465
             L   + + G +     YN +++ +
Sbjct: 533 YDLFRKMEDDGFLPNSCSYNVMIQGF 558


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 25/366 (6%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           GD    L L+  + GL          P    GP  C+AL+     + ++AEA  ++    
Sbjct: 73  GDLEEALRLVESMSGLE---------PSAAPGP--CAALIKKLCASGRTAEARRVLAACE 121

Query: 168 ECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
                  P  + YN M+  Y   GQLD   +++ ++     PD  TYN  +     +   
Sbjct: 122 -------PDVMAYNAMVAGYCVTGQLDAARRLVADMP--MEPDSYTYNTLIRGLCGRGRT 172

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
             A     ++ +    PD ++Y+ L     K    ++A   L EM  + C  + + Y+ +
Sbjct: 173 GNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVV 232

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++     G  D+ +   K + S   + N   Y  V+  L     +E AE +  E      
Sbjct: 233 VNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY 292

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +    N+L++    R  +E A    +++   G  P   ++  +   + K+ +M++ + 
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
             +  +   R   PD          L   G++D A  LL  L++ G     I YN+++  
Sbjct: 353 FVELMVS--RGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 410

Query: 465 YAKAGK 470
             KAGK
Sbjct: 411 LTKAGK 416



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 132/300 (44%), Gaps = 6/300 (2%)

Query: 116 LISKIRGLSSAENFFENLPDKMRG---PD--TCSALLHSYVQNKKSAEAEALMEKMSECG 170
           LI  + G     N    L D +R    PD  T + LL +  +     +A  L+++M   G
Sbjct: 162 LIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKG 221

Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAE 229
                + YN ++N     G++D   + L+ L  +   P+ V+YN+ L    +    E AE
Sbjct: 222 CAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAE 281

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           K   E+ +    P+ ++++ L S   +  L E A   L ++ K  C  N ++Y+ +L  +
Sbjct: 282 KLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAF 341

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
                 D  +   + M+S     +   Y  ++++L + GE + A  +  + +    T   
Sbjct: 342 CKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL 401

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
              N ++       + + A    N +VTKG++P   T+  ++ G  ++ ++E+ +  F K
Sbjct: 402 ISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCK 461



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 141/300 (47%), Gaps = 5/300 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMS 167
           Y V ++ I +   +  A  F ++LP     P+T S   +L      ++  +AE LM +MS
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G+    + +N +++     G ++   ++L ++ K   +P+ ++YN  L A   Q   +
Sbjct: 289 QKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMD 348

Query: 227 TAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
            A  AF+EL  ++   PD +SY+TL +   +    + A   L +++ + C    ++Y+++
Sbjct: 349 RA-MAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 407

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +   T  G   E L +  +M++   + +   Y+ + S L +    E+A   + + + +  
Sbjct: 408 IDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGI 467

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             +  + N +L     R +   A   +  +++ G  P  +T+ +L  G   +G +++  E
Sbjct: 468 RPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARE 527


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 2/266 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKM-SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
           T S L+    +N K  EA    E+M S+   L   L YN ++N +   G++D+   +L+ 
Sbjct: 228 TYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEF 287

Query: 201 LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
           +K N  SP+V  Y++ +     +   + A++ F E+K   + PD ISY+TL +   +   
Sbjct: 288 MKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGR 347

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A   L++M+ + CR + V ++ +L      G  DE L + +K+      +N   Y  
Sbjct: 348 VDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRI 407

Query: 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           V++ L + GE  KA  +     +          N LL    N   ++ A      L+  G
Sbjct: 408 VLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESLLGLLEMG 467

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLE 405
            KP + +W  L     ++ +M  V E
Sbjct: 468 FKPEHESWFTLVDLICRERKMLPVFE 493



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 10/236 (4%)

Query: 242 PDWISYSTLTSLYIKMELPEKAATTL-KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
           P   + ST  +L ++ +  + A   L     K   R N   ++ L+  +   G       
Sbjct: 152 PSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFE 211

Query: 301 IWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAA 358
           + K+M S   +  N   Y+ +I  L + G+ ++A   ++E  S      D    NIL+  
Sbjct: 212 VVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILING 271

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRK 416
           +  R +++ A +    + + G  P    + +L  GY K+G++++  E F   K++G    
Sbjct: 272 FCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG---- 327

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
             PD    T   N L   G +D A  LL  +++      T  +N +L    + G+ 
Sbjct: 328 MKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRF 383


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 139/300 (46%), Gaps = 10/300 (3%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN ++ + +  GQ +KV ++  E+  + +  PD +TY+  +++       ++A + F E+
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   + P    Y+TL  +Y K+   EKA    +EM++  C      Y+ L+      G  
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-- 353
           DE    +K M+      +      +++ L K+G  E+  N++ E      T  P V +  
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT--PTVVSYN 377

Query: 354 -ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412
            ++ A + ++  +    S+++++    + P   T+ +L  GY K  ++EK L   ++   
Sbjct: 378 TVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM-- 435

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
             + + P      +  N L +    + A  L   L+ N G+VS+ +Y  +++ + K GK+
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/358 (19%), Positives = 146/358 (40%), Gaps = 7/358 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   L +  K+  +  A + FE +      P   T + L+    +  +  EA    + M 
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC-ASQNDK 225
             G     +  N+++N+    G+++++  +  E+     +P VV+YN  + A   S+   
Sbjct: 331 RDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHV 390

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
                 F ++K   + P   +YS L   Y K    EKA   L+EM+++       AY SL
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSL 450

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           ++        +    ++K++   F  ++   Y  +I    K G+  +A ++++E ++   
Sbjct: 451 INALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS 510

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L++  +    +  A S   ++   G +    +  ++  G+ + G   + +E
Sbjct: 511 GPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIE 570

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLL 462
            F+    S  K  PD              G  + A  ++  +++ G     I Y+S+L
Sbjct: 571 MFETIKHSGIK--PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 38/225 (16%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGD-YAVHLDLISKIRGLSSAENFFENLPD 135
           ++  L K KRY+ A E+  + EL+ +   VS   YAV +    K   LS A + F  + +
Sbjct: 450 LINALGKAKRYEAANEL--FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKN 507

Query: 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
           +  GPD  +                                 YN +++  +  G +++  
Sbjct: 508 QGSGPDVYA---------------------------------YNALMSGMVKAGMINEAN 534

Query: 196 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
            +L+++++N    D+ ++N+ L   A       A + F  +K + I PD ++Y+TL   +
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEV 298
               + E+AA  ++EM+ +    + + YSS+L    N+ + KD+V
Sbjct: 595 AHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDV 639



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 3/192 (1%)

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           S L     + ++  KA +   + + R C+     Y+S++ +    G  ++V  ++ +M +
Sbjct: 166 SELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCN 225

Query: 308 LFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
                 D   Y+ +ISS  KLG  + A  ++DE +        ++   LL  Y    ++E
Sbjct: 226 EGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVE 285

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A   +  +   G  P   T+  L  G  K G++++    +K  +       PD   +  
Sbjct: 286 KALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD--GLTPDVVFLNN 343

Query: 427 AYNKLEEQGDID 438
             N L + G ++
Sbjct: 344 LMNILGKVGRVE 355


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 147/332 (44%), Gaps = 5/332 (1%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAE 160
           I+   G Y + +D +S  R ++  E  FE +  K    D    S+++++Y +      A 
Sbjct: 133 IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRAS 192

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC 219
            + ++    G       Y  ++N +   GQ++    ++ +++ +    + + +N  +   
Sbjct: 193 EVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGY 252

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
             +N  + A +  + ++K  I+ D  +Y+TL     +    ++A   L+ M ++  R N 
Sbjct: 253 CRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNH 312

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V+Y++L+S++ N G   E  R++++M    A+ +   Y  ++   +K G   +AE   +E
Sbjct: 313 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNE 372

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            E      D      L+  +    ++++A   +  +  +G KP    +  L  G  K+G+
Sbjct: 373 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 432

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            E+  + +   +G      PD  L +A    L
Sbjct: 433 SEEAFQLYDNMLGD--GLTPDDALYSALVGSL 462



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 2/281 (0%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD +  P + S ++  Y ++ + A A  L+++M   G     L YN +L+ Y      D+
Sbjct: 62  PDSVT-PLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 120

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           V +ML+ ++ +   P V TY + +   ++  D    E  F E+K   +  D   YS++ +
Sbjct: 121 VAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVIN 180

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            Y +     +A+    E        N   Y +L++ +  +G  +    +   M      +
Sbjct: 181 AYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGI 240

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   +  +I    +    +KA  I    E +    D    N L       N+++ A++  
Sbjct: 241 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 300

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
             ++ KG++P + ++  L   +  +G M +    F++  G+
Sbjct: 301 RIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGN 341


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 30  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREAR 89

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 90  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 149

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 150 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 209

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 210 VTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 269

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 270 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 325

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 326 IEEATYVFRQAIDAGEVKDITVFERMI 352



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 211 TYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 271 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 326

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 327 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVV 386

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 387 LNAYGKLQEFDKANDVYMEMQEVG 410



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 45/258 (17%), Positives = 114/258 (44%), Gaps = 7/258 (2%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           ++++ ++  D + YS L  L  K+    KA +    ++      + VAY+++++++    
Sbjct: 24  KMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKAK 83

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E   +  +M +     N   Y+ +++  V+  +F +A +++ E   I    D    N
Sbjct: 84  LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 143

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-KAIG 412
           I++  Y      + A+  +  +   GI+P   ++  L   Y       + +  F+     
Sbjct: 144 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 203

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           ++ + V  +  +   Y K  E    + A +L+  +++ G     I Y++++  + K GK+
Sbjct: 204 NIEQNVVTYNSMIMIYGKTLEH---EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKL 260

Query: 472 --PLIIVERMQKDNVQMD 487
               ++ ++++   V++D
Sbjct: 261 DRAAMLFQKLRSSGVEID 278


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 3/288 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +S A  + + + ++   PD  S   L++ Y +    AEA  L  ++     +   + YN 
Sbjct: 328 VSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNT 387

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +++     G LD    M  ++ K    PDVVT+ + +       +   A++ F E+    
Sbjct: 388 LIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           + PD I+Y+T     +K+  P KA    +EM+      + + Y+ L++    +G  D+  
Sbjct: 448 LKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDAN 507

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            + +KM       +   YT +I + +  G   KAE ++ +              +L+ +Y
Sbjct: 508 ELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSY 567

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
             R +L+ A+ +++ +  KG+ P   T+  L +G  K+  M+     F
Sbjct: 568 AVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLF 615



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 3/190 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L++   +     +A  L++KM   G +   + Y  +++ ++ +G L K  ++
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEV 544

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
             + LKK   P VVTY + + + A +   + A+K F E++   + P+ I+Y+ L     K
Sbjct: 545 FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCK 604

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             + + A     EME +    N+  Y+ L++  +N+ Y  + L+++K M+    K +   
Sbjct: 605 ENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCT 664

Query: 317 YTCVISSLVK 326
           ++ ++  L K
Sbjct: 665 HSALMKHLSK 674



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 3/246 (1%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L+  + Q      A+ L ++M   G     + Y   +   +  G   K   M
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +E+K +   PD++TYN+ +       + + A +   +++   I PD ++Y+++   ++ 
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLI 534

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             L  KA     +M K+    + V Y+ L+  Y   G  D   + + +M       N   
Sbjct: 535 SGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT 594

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I  L K    + A N++ E ES   + +     IL+    N    + A   Y  ++
Sbjct: 595 YNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDML 654

Query: 377 TKGIKP 382
            + IKP
Sbjct: 655 DREIKP 660



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 49/287 (17%), Positives = 108/287 (37%), Gaps = 11/287 (3%)

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +N+   V   +L +   A +   E     F ++    + PD  + + +  L     +  +
Sbjct: 131 RNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNE 190

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                  M K   R   V +++++      G     + +   M       ND  Y  +++
Sbjct: 191 VEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVN 250

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
            L   GEF++A+ + ++   +         N L+  +  +   E A      ++ +G  P
Sbjct: 251 GLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALP 310

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDG 439
              T+  + +   + G++          +      +PD   +  +   Y++L   G+   
Sbjct: 311 TVVTYNTIMYSLCRLGRVSDARRYLDVMVNE--DLMPDLVSYNTLIYGYSRL---GNFAE 365

Query: 440 AEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKMPLIIVERMQKDNVQ 485
           A  L   LR+   V + + YN+L+    + G   L I + M+ D ++
Sbjct: 366 ALLLFSELRSKNLVPSVVTYNTLIDGGCRTGN--LDIAKGMKDDMIK 410


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
           YN M+ + +  GQ +KV ++  E+  + +  PD +TY+  ++A      +++A +   E+
Sbjct: 197 YNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEM 256

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           K   + P    Y+ L +L+ K+     A +  +EM  + CR +   Y+ L+      G  
Sbjct: 257 KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-I 354
           DE    + +M     + +      +I+ L K G  + A  ++ E  ++         N I
Sbjct: 317 DEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI 376

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           + A + ++++     S++ R+   GI P   T+ +L  G+ K  +MEK +   ++     
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM--DE 434

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRTYAKAGKM 471
           + + P      +  + L +    D A  L   L+ N G  S+ +Y  +++   KAG++
Sbjct: 435 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 4/302 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + + L  K+  +  A + FE +  +   PD  T + L+    +  +  EA     +M 
Sbjct: 268 YTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
             G     +  N+M+N     G+LD   ++ QE+      P VVTYN  + A      + 
Sbjct: 328 REGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRA 387

Query: 227 TAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           +   ++ E +K++ I P   +YS L   + K    EKA   L+EM+++       AY SL
Sbjct: 388 SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSL 447

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           +         D    +++++       +   Y  +I  L K G  + A N++DE   +  
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 507

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
             D    N L++       L+ A S   R+   G  P   ++ ++  G  K+  +     
Sbjct: 508 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIVQWR 567

Query: 406 CF 407
           CF
Sbjct: 568 CF 569



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 136/329 (41%), Gaps = 17/329 (5%)

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
           + Y+ +++ +   G+ D   Q+L E+K N   P    Y + +A     ND   A   F E
Sbjct: 231 MTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEE 290

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++     PD  +Y+ L     K    ++A     EM++  CR + +  +++++     G 
Sbjct: 291 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGR 350

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRV 351
            D+ ++++++M +L    +   Y  +I +L +     +A  +   +E +  +G       
Sbjct: 351 LDDAMKLFQEMGTLRCIPSVVTYNTIIKALFE--SKSRASEVPSWFERMKESGISPSSFT 408

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF---K 408
            +IL+  +   N++E A      +  KG  PC   +  L     K  + +   E F   K
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK 468

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK 467
           +  GS        R+       L + G +D A ++   +   G       YN+L+   A+
Sbjct: 469 ENCGS-----SSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 468 AGKM--PLIIVERMQKDNVQMDAETQKVL 494
            G +   L  + RMQ+     D  +  ++
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNII 552



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 107/239 (44%), Gaps = 9/239 (3%)

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCV 320
           KA     +++ R C+    AY+S++ +  + G  ++V  ++ +M +      D   Y+ +
Sbjct: 177 KAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSAL 236

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           IS+  KLG  + A  + +E +        ++  +L+A +   N +  A S +  +  +  
Sbjct: 237 ISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYC 296

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P   T+  L  G  K G++++    F +         PD  ++    N L + G +D A
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEM--QREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 441 EHL---LVTLRNAGHVST--EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVL 494
             L   + TLR    V T   I  +L  + ++A ++P    ERM++  +   + T  +L
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWF-ERMKESGISPSSFTYSIL 412


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 153/400 (38%), Gaps = 24/400 (6%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE--------N 132
           L+  K Y  +LE   W+  Q         + + L +++K R   SAE+           +
Sbjct: 89  LKTQKDYVLSLEFFNWVATQNPSSHTLETHCIILHILTKRRKFKSAESILRSIIESCSID 148

Query: 133 LPDKM------------RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
            P K+              P     L  ++   KK   A     +M + GFL      N 
Sbjct: 149 FPSKLFESLLYSYRLCDSSPHVFDLLFKTFAHLKKFRNASDTFCRMKDYGFLPTVESCNA 208

Query: 181 MLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
            L+  ++  + D      +E++++   P+  T NL + AC      + A   F E+    
Sbjct: 209 YLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMG 268

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
             P+  SY+TL + Y    L   A      MEK     + V +++L++ +  +G   E  
Sbjct: 269 FSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEAS 328

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
           +++ +M  +        Y  +I+   K G  E    +++E        D    N L+   
Sbjct: 329 KLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGL 388

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
               + + A      L  KG+ P  +T+  L +G   + Q E+  + +K  I S   + P
Sbjct: 389 CKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKS--SFTP 446

Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459
             +      +   E  D DGA  LL  + N  H + ++ N
Sbjct: 447 CDQTFRMLLSTFCENEDYDGAVQLLEEMLNR-HKAPDVNN 485



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 38/211 (18%)

Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
           LS   N    D  L  +++M       N      VI +  KLG  +KA  +++E  ++  
Sbjct: 210 LSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGF 269

Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           + +    N L+A Y N+  L  A    + +   G+ P   T+  L  G+ K G++++  +
Sbjct: 270 SPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASK 329

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
            F                           G++ G          +   +T  YN L+  Y
Sbjct: 330 LF---------------------------GEMKGM---------SLSPTTVTYNILINGY 353

Query: 466 AKAG--KMPLIIVERMQKDNVQMDAETQKVL 494
           +KAG  +M   + E M +  V+ D  T   L
Sbjct: 354 SKAGNCEMGNRLFEEMSRFQVKADILTYNAL 384


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 173/428 (40%), Gaps = 45/428 (10%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL-PD 135
           I + L+ +K    AL +  W + Q         Y V  D +++ R     ++ FE +  D
Sbjct: 171 ITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQD 230

Query: 136 KMRGPDTCSALLHSYVQNKKSAE----AEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191
                D      +  +Q    AE    A    +K  E G       YN+++ L+++ G  
Sbjct: 231 SSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLP 290

Query: 192 DKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
            K  ++ + ++K  S  D  TY L + + A     + A K F ++K+ K+ P   S+S  
Sbjct: 291 YKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRP---SFSVF 347

Query: 251 TSLYIKMELPEKAATTLK---EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +SL   M    +  T++K   EM+    R +   + SL+  Y   G  D  LR+W +M  
Sbjct: 348 SSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKK 407

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
              + N   YT +I S  K G+ E A +++ + E       P   + LL  +    Q++ 
Sbjct: 408 SGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDS 467

Query: 368 AESFYNRLVTKGIKPCYTTW---------------------ELLTWGYLKKGQMEKVLEC 406
           A   YN +   G++P  +++                     E+   GY        VL  
Sbjct: 468 AMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMI 527

Query: 407 FKK--AIGSVRKWV---------PDHRLITAAYNKLEEQGDIDGAEHLLVTL-RNAGHVS 454
           + K  ++    KW+          ++ +I   +    + G  D A  LL TL  +AG V 
Sbjct: 528 YIKDASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVD 587

Query: 455 TEIYNSLL 462
             +Y S+L
Sbjct: 588 LVLYTSIL 595



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  VI  L K  + E A   + + +      D +  N L+  ++N+     A   Y  + 
Sbjct: 242 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESME 301

Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436
                   +T+EL+     K G+++   + F++     RK  P   + ++  + + + G 
Sbjct: 302 KTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQM--KERKLRPSFSVFSSLVDSMGKAGR 359

Query: 437 IDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAGKM 471
           +D +  + + ++  GH  S  ++ SL+ +YAKAGK+
Sbjct: 360 LDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKL 395


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 145/321 (45%), Gaps = 24/321 (7%)

Query: 181 MLNLYISNGQLDKVPQMLQE-------LKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
           ML +  S G LD +  +L+E       L+ NT   ++T      A    N    A   F 
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLIT------AYGRGNKSGDAFDLFN 54

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           + +     P   +++ L  + +     E+A    K++ ++ C+ +R AY+ L+  +   G
Sbjct: 55  QAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSG 114

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP- 352
             D  + ++++M    ++ ++  Y  ++++L K G  ++A + +D       T  P +P 
Sbjct: 115 QLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLT--PNIPT 172

Query: 353 -NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N+L+ A+    QL+MA   +  +  +G +P   T+ +L       G++    + F K  
Sbjct: 173 YNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMT 232

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
           G      PD    +   N L + G ++ A  +   + + G V+ ++  YNSLL T AKAG
Sbjct: 233 GD--GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG-VAVDLVNYNSLLATLAKAG 289

Query: 470 KMPLI--IVERMQKDNVQMDA 488
            M  +  +++ M +     DA
Sbjct: 290 NMDRVWKLMKEMSRKGFHPDA 310



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 153/364 (42%), Gaps = 6/364 (1%)

Query: 54  SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113
           SA    R+ K +G    +Y    +V  L K  R + A    + M L+  +      Y + 
Sbjct: 118 SAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM-LERGLTPNIPTYNLL 176

Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           +D   K+  L  A   F  +  +   P   T + LL +     +   A  L  KM+  G 
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEK 230
                 Y+ ++N    +G++++  ++ +E+  +  + D+V YN  LA  A   + +   K
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              E+ +    PD  S++T+     K   P+ A      M +  C+ + ++Y+ L+  Y 
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G   +  ++ ++M+          Y  +I  L   G+ ++A  + +E E+     D  
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV 416

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-- 408
             N L+     R + + A   + ++  KG++P   ++ +   G     ++++ L  FK  
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476

Query: 409 KAIG 412
           KA+G
Sbjct: 477 KAVG 480



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 136/334 (40%), Gaps = 41/334 (12%)

Query: 64  EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ-YDIKLVSGDYAVHLDLISKIRG 122
           E G T +    N ++   RK+ +   AL +   M+ + +   +V+  Y + LD +     
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT--YNILLDALCSAGR 220

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A   F  +      PD  T S L++   ++ +  EA  +  +M + G     + YN 
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNS 280

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           +L      G +D+V ++++E+ +K   PD  ++N  + A    N  + A + F  + ++ 
Sbjct: 281 LLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESG 340

Query: 240 IDPDWISYSTLTSLYIKME-----------------LPE------------------KAA 264
             PD ISY+ L   Y +                   +PE                  +A 
Sbjct: 341 CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAF 400

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             L+EME   CR + V Y+ L+ +    G      R++++M     + +   Y   I  L
Sbjct: 401 AVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGL 460

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
                 ++A  ++ + +++    D  +  IL+ A
Sbjct: 461 AFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRA 494



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 46/337 (13%)

Query: 142 TCSALLHSY-------VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194
            CS  +H++       V + +   AE + +K+ + G       YN ++  +  +GQLD  
Sbjct: 60  ACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSA 119

Query: 195 PQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
            +M +E+K K + PD  TY   + A       + A   F  + +  + P+  +Y+ L   
Sbjct: 120 MEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDA 179

Query: 254 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
           + K+   + A     EM++R  + + V Y+ LL    + G      +++ KM       +
Sbjct: 180 FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239

Query: 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
              Y+ +++ L K G  E+A  ++ E                                  
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVFRE---------------------------------- 265

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
            +V +G+      +  L     K G M++V +  K+   S + + PD        + L +
Sbjct: 266 -MVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM--SRKGFHPDAFSFNTIMDALGK 322

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAG 469
               D A  +   +  +G     I YN L+ +YA+ G
Sbjct: 323 ANKPDAAREVFARMVESGCKPDLISYNILIDSYARFG 359


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 176/425 (41%), Gaps = 41/425 (9%)

Query: 86  RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TC 143
           + + AL + E M  ++++   +  Y   L  +SK   LS  ++   ++      P+  T 
Sbjct: 219 KLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTY 278

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           + L++ Y +     EA  ++E M +   L     YN ++N   + G + +  +++  +K 
Sbjct: 279 NNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKS 338

Query: 204 -NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
               PDVVTYN  +  C        A+K   +++   + P+ ++++       K E  E+
Sbjct: 339 LKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREE 398

Query: 263 AATTLKEM-EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
               +KE+ E      + V Y +L+  Y  +G     L + ++M     KMN      ++
Sbjct: 399 VTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL 458

Query: 322 SSLVK------------------------------LGEF-----EKAENIYDEWESISGT 346
            +L K                              +G F     EKA  ++DE + I  T
Sbjct: 459 DALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKIT 518

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
                 N L+    +  + E+A   ++ L   G+ P   T+  +  GY K+G++EK  E 
Sbjct: 519 PTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEF 578

Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466
           + ++I     + PD+       N L ++G  + A +   TL     V T  YN+++  + 
Sbjct: 579 YNESIK--HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTVTYNTMISAFC 636

Query: 467 KAGKM 471
           K  K+
Sbjct: 637 KDKKL 641



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 151/338 (44%), Gaps = 11/338 (3%)

Query: 142 TCSALLHSYVQNKKS---AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           TC+ LL   V+   S   A A  + + M + G       +N ++N Y   G+L+    ML
Sbjct: 168 TCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGML 227

Query: 199 QEL--KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
           + +  + N +PD VTYN  L A + +      +   L++K+  + P+ ++Y+ L   Y K
Sbjct: 228 ERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCK 287

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
           +   ++A   ++ M++     +   Y+ L++   N G   E L +   M SL  + +   
Sbjct: 288 LGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVT 347

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
           Y  +I    +LG   +A+ + ++ E+     +    NI L       + E        LV
Sbjct: 348 YNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELV 407

Query: 377 -TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL-ITAAYNKLEEQ 434
              G  P   T+  L   YLK G +   LE  ++ +G  +K +  + + +    + L ++
Sbjct: 408 EMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE-MG--QKGIKMNTITLNTILDALCKE 464

Query: 435 GDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             +D A +LL +    G++  E+ Y +L+  Y +  K+
Sbjct: 465 RKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKV 502



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 4/276 (1%)

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETA 228
           GF    + Y+ ++  Y+  G L    +M++E+ +K    + +T N  L A   +   + A
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEA 470

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
                   K     D ++Y TL   Y + E  EKA     EM++         ++SL+  
Sbjct: 471 HNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGG 530

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
             + G  +  +  + ++       +D  +  +I    K G  EKA   Y+E    S   D
Sbjct: 531 LCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPD 590

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
               NILL         E A +F+N L+T+  +    T+  +   + K  ++++  +   
Sbjct: 591 NYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCKDKKLKEAYDLLS 649

Query: 409 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
           +     ++  PD     +    L E G +  A+ LL
Sbjct: 650 EM--EEKRLEPDRFTYNSIITSLMEDGKLSEADELL 683



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L+     + K+  A    ++++E G L     +N ++  Y   G+++K  +   E 
Sbjct: 523 TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNES 582

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +K +  PD  T N+ L     +   E A   F  L  T+ + D ++Y+T+ S + K +  
Sbjct: 583 IKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLI-TEREVDTVTYNTMISAFCKDKKL 641

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
           ++A   L EME++    +R  Y+S+++     G   E   + KK    F  M
Sbjct: 642 KEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGKFGSM 693


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 51/355 (14%)

Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
           G  TCS LL+   ++ K + AE +++ +   G +   + YN ++N Y   G+L       
Sbjct: 154 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL------- 206

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
                                      E A   F ++K   I PD I+Y+ L +   K E
Sbjct: 207 ---------------------------EGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 239

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
               A   L EM+          +++L+  Y   G  ++   +  +M     K N   Y 
Sbjct: 240 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 299

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++++  K G+  +A  I D+        + +V N ++ AY+     + A     ++ + 
Sbjct: 300 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 359

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA--YNKLEE--- 433
           GI P   T+ LL  G   + Q+ +  E            + +HRLI  A  YN L     
Sbjct: 360 GISPSIVTYNLLIKGLCNQSQISEAEEIINS--------LSNHRLIPDAVSYNTLISACC 411

Query: 434 -QGDIDGAEHLLVTLRNAGHVST-EIYNSLLRTYAKAGKMPLI--IVERMQKDNV 484
            +G+ID A  L   +   G  ST   Y+ L+     AG++  +  + ++M ++NV
Sbjct: 412 YRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 466



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 197 MLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           ML+ + ++ +P  +  +YN+ +A          A + F E+ +  + P+ I+Y+T+   +
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
           IK    E       +M     + N + Y+ LLS     G   E   +  +M S     + 
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y+ +   L + G+ +   +++ ++     T      +ILL       ++ +AE     
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           LV  G+ P    +  L  GY + G++E     F +     R   PDH    A  N L + 
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM--KSRHIKPDHITYNALINGLCKA 238

Query: 435 GDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKMP--LIIVERMQKDNVQ 485
             I  A+ LL+ +++ G + + E +N+L+  Y + G++    I++  MQ++ ++
Sbjct: 239 ERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 292



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 1/198 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
            ++++++ +N K  EA A+++ M     L     YN +++ Y+ +G  D+   +++++K 
Sbjct: 299 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 358

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           N  SP +VTYNL +    +Q+    AE+    L   ++ PD +SY+TL S        +K
Sbjct: 359 NGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK 418

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M K   +     Y  L+S     G  +E+  +++KMM      ++A +  ++ 
Sbjct: 419 ALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVE 478

Query: 323 SLVKLGEFEKAENIYDEW 340
           +  K G   KAE++  E 
Sbjct: 479 AYSKYGNEIKAEDLRKEM 496



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 106/253 (41%), Gaps = 3/253 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   +++A++    + D    P  +T + L+ +Y +  +  +   ++ +M 
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKE 226
           E G     + Y  ++N +  NG++ +   +L ++  K+  P+   YN  + A       +
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A     ++K   I P  ++Y+ L           +A   +  +       + V+Y++L+
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 407

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
           S     G  D+ L + ++M     K     Y  +IS L   G   + E +Y +    +  
Sbjct: 408 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 467

Query: 347 GDPRVPNILLAAY 359
               + NI++ AY
Sbjct: 468 PSNAIHNIMVEAY 480



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 152/368 (41%), Gaps = 20/368 (5%)

Query: 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYN 213
           +  +A  + ++M+E   L   + YN M++ +I  G L+   ++  ++      P+ +TYN
Sbjct: 30  RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 89

Query: 214 LWLAA-CASQNDKETAEKAFL-ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           + L+  C +    ET+  A L E+   K+ PD  +YS L     +    +   +   +  
Sbjct: 90  VLLSGLCRAGRMGETS--ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 147

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
           K          S LL+     G       + + +++         Y  +I+   + GE E
Sbjct: 148 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 207

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A + + + +S     D    N L+       ++  A+     +   G+ P   T+  L 
Sbjct: 208 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 267

Query: 392 WGYLKKGQMEKVLECF----KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447
             Y + GQ+EK   CF    +     ++  V  +  I  A+ K    G I  A  +L  +
Sbjct: 268 DAYGRTGQLEK---CFIVLSEMQENGLKPNVVSYGSIVNAFCK---NGKIPEAVAILDDM 321

Query: 448 RNAGHV-STEIYNSLLRTYAKAG--KMPLIIVERMQKDNVQMDAETQKVL--KITSEMPV 502
            +   + + ++YN+++  Y + G      I+VE+M+ + +     T  +L   + ++  +
Sbjct: 322 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQI 381

Query: 503 SEVSSIFS 510
           SE   I +
Sbjct: 382 SEAEEIIN 389


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 12/390 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLP----DKMRGPDTCSALLHSYVQNKKSAEAEALMEK 165
           Y+V ++ + K+  +  A    + +     D +    T ++ L    +   +AEA  LM  
Sbjct: 154 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 166 MSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
           + +      P  + ++ +++     GQ D+       +     P+VVTYN  +      +
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACND-DMIAGGYVPNVVTYNALVNGLCKAD 272

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
             E A      +    + PD I+YS L   + K    ++A   L  M  R C  N V ++
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 332

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           S++          E  +I  ++ +     +   +  +I+   K G FE+A  +++E  + 
Sbjct: 333 SIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 392

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           +   D      L+       Q+E A    + +   G+ P   T+ +L  G  K G++E+ 
Sbjct: 393 NMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEP 452

Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLL 462
            E  ++ + S    VP+     +    L      D A  L+  L++ G    T  YN L+
Sbjct: 453 CEFLEEMVSS--GCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILV 510

Query: 463 RTYAKAGK--MPLIIVERMQKDNVQMDAET 490
               K+GK    + ++E M     Q D+ T
Sbjct: 511 DGLWKSGKTEQAITVLEEMVGKGHQPDSFT 540



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 5/314 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   ++ + K   +  A    E++ DK   PD  T S L+ ++ +  +  EA  L+  M+
Sbjct: 261 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 320

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQNDKE 226
             G     + +N +++    + +  +  Q+ LQ   +   PD VT+N+ +A      + E
Sbjct: 321 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFE 380

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F E+    + PD +++  L     K    E A   L  M       N V Y+ L+
Sbjct: 381 QASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLV 440

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                 G  +E     ++M+S         Y  ++ +L +    + A  +  + +S    
Sbjct: 441 HGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWD 500

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            D    NIL+       + E A +    +V KG +P   T+     G  + G +   +E 
Sbjct: 501 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMEL 560

Query: 407 FKKAIGSVRKWVPD 420
            +  +   +  +PD
Sbjct: 561 LRVVLA--KGMLPD 572



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 127/337 (37%), Gaps = 50/337 (14%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +   +P +VTYN  +      N+     + F EL K    PD ++Y+TL     K    E
Sbjct: 74  RDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLE 133

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--------------- 306
           +A      M  R C  N V YS L++    +G  DE   + ++M                
Sbjct: 134 EARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNS 193

Query: 307 ------------------------SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
                                   SL    +   ++ +I  L K G+ ++A N  D+   
Sbjct: 194 FLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDM-- 249

Query: 343 ISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400
           I+G   P V   N L+      +++E A +    +V KG+ P   T+ +L   + K  ++
Sbjct: 250 IAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 309

Query: 401 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YN 459
           ++ LE       + R   P+     +  + L +      A  + + + N   V  ++ +N
Sbjct: 310 DEALELLHGM--ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFN 367

Query: 460 SLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            L+    KAG       + E M   N+Q D  T   L
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGAL 404


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 150/355 (42%), Gaps = 46/355 (12%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDT-C-SALLHSYVQNKKSAEAEALMEKMS 167
           YA  +D + K   L  A      +P     P+  C + LL       +  EAE L+ +M 
Sbjct: 290 YATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMF 349

Query: 168 ECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLW-------- 215
           +     CPL    +N +++    NG +D+V ++L++ L+    PDV+TY           
Sbjct: 350 D---KDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406

Query: 216 -----------LAACASQNDKET----------------AEKAFLELKKTKIDPDWISYS 248
                      +AAC  + +  +                AE+   ++ +    P+ ++++
Sbjct: 407 LIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFN 466

Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
           TL +   K  L E+A   LK+M    C  + ++YS+++      G  DE L +   M+  
Sbjct: 467 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKK 526

Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
               N   Y+ + S+L   G   K   +++  +  +   D  + N ++++   R + + A
Sbjct: 527 GMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRA 586

Query: 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDH 421
             F   +V+ G  P  +T+ +L  G   +G +++  E   +    G++RK +  H
Sbjct: 587 IEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGALRKHLMKH 641



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 46/308 (14%)

Query: 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           L ++ G L+++P          SP+VV YN  L    S +  E AE    E+       D
Sbjct: 303 LEVARGILNRMPSY------GLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLD 356

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
            ++++ L     +  L ++    L++M +  C  + + Y+++++ +   G  DE + + +
Sbjct: 357 DVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLR 416

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
            M +   + N   YT V+  L        AE   D                         
Sbjct: 417 SMAACGCRPNTVSYTIVLKGLC------SAERWVD------------------------- 445

Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
               AE   ++++ +G  P   T+  L     KKG +E+ +E  K+ +  V    PD   
Sbjct: 446 ----AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML--VNGCSPDLIS 499

Query: 424 ITAAYNKLEEQGDIDGAEHLL-VTLRNAGHVSTEIYNSLLRTYAKAGKMPLII--VERMQ 480
            +   + L + G+ D A  LL V ++     +T IY+S+    +  G++  +I   E +Q
Sbjct: 500 YSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQ 559

Query: 481 KDNVQMDA 488
              V+ DA
Sbjct: 560 DTTVRSDA 567


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L +    PD  +  A++  + + K   EA 
Sbjct: 40  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREAR 99

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 100 SLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 159

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 219

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 220 VTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 279

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 280 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 335

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 336 IEEATYVFRQAIDAGEVKDITVFERMI 362



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/290 (17%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++  SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    
Sbjct: 2   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYS 61

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA +    ++      + VAY++++ ++       E   +  +M +     N   Y+ ++
Sbjct: 62  KAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLL 121

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           +  V+  +F +A +++ E   I    D    NI++  Y      + A+  +  +   GI+
Sbjct: 122 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    + A
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEH---EKA 238

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            +L+  +++ G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 239 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 221 TYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 281 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 336

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 337 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAIV 396

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 397 LNAYGKLHEFDKANDVYMEMQEVG 420


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 47  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 106

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 107 SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 166

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 167 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 226

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 227 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 286

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 287 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 342

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 343 IEEATYVFRQAIDAGEVKNIAVFERMI 369



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/290 (17%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++  SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    
Sbjct: 9   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYS 68

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA +    +++     + VAY+++++++       E   +  +M +     N   Y+ ++
Sbjct: 69  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 128

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           +  V+  +F +A +++ E   I    D    NI++  Y      + A+  +  +   GI+
Sbjct: 129 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 188

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    + A
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH---EKA 245

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            +L+  +++ G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 246 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 228 TYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 288 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 343

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       KN   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 344 EEATYVFRQAIDAGEVKNIAVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVV 403

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 404 LNAYGKLQEFDKANDVYMEMQEVG 427


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 30  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 89

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 90  SLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 149

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 150 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 209

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 210 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 269

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 270 LRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 325

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 326 IEEATYVFRQAIDAGEVKDITVFERMI 352



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 211 TYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270

Query: 202 KKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 271 RSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 326

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 327 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIV 386

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 387 LNAYGKLQEFDKANDVYMEMQEVG 410



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 44/258 (17%), Positives = 114/258 (44%), Gaps = 7/258 (2%)

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           ++++ ++  D + YS L  L  K+    KA +    +++     + VAY+++++++    
Sbjct: 24  KMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAK 83

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
              E   +  +M +     N   Y+ +++  V+  +F +A +++ E   I    D    N
Sbjct: 84  LFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 143

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-KAIG 412
           I++  Y      + A+  +  +   GI+P   ++  L   Y       + +  F+     
Sbjct: 144 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 203

Query: 413 SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           ++ + V  +  +   Y K  E    + A +L+  +++ G     I Y++++  + K GK+
Sbjct: 204 NIEQNVVTYNSMMMIYGKTLEH---EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKL 260

Query: 472 --PLIIVERMQKDNVQMD 487
               ++ ++++    ++D
Sbjct: 261 DRAAMLFQKLRSSGXEID 278


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 46  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 105

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 106 SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 165

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 166 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 225

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 226 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 285

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 286 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 341

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 342 IEEATYVFRQAIDAGEVKDITVFERMI 368



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/290 (17%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++  SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    
Sbjct: 8   RRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYS 67

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           KA +    +++     + VAY+++++++       E   +  +M +     N   Y+ ++
Sbjct: 68  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLL 127

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
           +  V+  +F +A +++ E   I    D    NI++  Y      + A+  +  +   GI+
Sbjct: 128 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 187

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E    + A
Sbjct: 188 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH---EKA 244

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
            +L+  +++ G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 294



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 227 TYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 287 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 342

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 343 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIV 402

Query: 321 ISSLVKLGEFEKAENIYDEWESIS 344
           +++  KL EF+KA ++Y E + + 
Sbjct: 403 LNAYGKLQEFDKANDVYMEMQEVG 426


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 119/271 (43%), Gaps = 5/271 (1%)

Query: 144 SALLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYI----SNGQLDKVPQML 198
           + LL     +K++++A + ++ +M+E G +     YN +L        S   L+ +  M 
Sbjct: 126 TPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMA 185

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
            +    + PDVV+Y   +     + D + A   + E+    I PD ++Y+++ +   K +
Sbjct: 186 DDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQ 245

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             +KA   L  M K     + + Y+S+L  Y + G   E +   KKM S   + +   Y+
Sbjct: 246 AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYS 305

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            ++  L K G   +A  I+D         +      LL  Y  +  L       + +V  
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           GI P +  + +L   Y K+G++++ +  F K
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSK 396



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 19/337 (5%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQE-L 201
           LL       +S EA  L+  M++      P   + Y  ++N +   G  DK      E L
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
            +   PDVVTYN  +AA       + A +    + K  + PD ++Y+++   Y     P+
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A   LK+M       + V YS L+      G   E  +I+  M     K     Y  ++
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
                 G   +   + D         D  V +IL+ AY  + +++ A   ++++  +G+ 
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAI------GSVRKWVPDHRLITAAYNKLEEQG 435
           P   T+  +     K G++E  +  F++ I      G++      H L T   NK E   
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC--NKWER-- 459

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
               AE L++ + + G  ++T  +NS++ ++ K G++
Sbjct: 460 ----AEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 3/311 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL-DKVPQMLQELK 202
           S L+ +Y +  K  +A  +  KM + G     + Y  ++ +   +G++ D +    Q + 
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +  SP  + YN  +    + N  E AE+  LE+    I  + I ++++   + K     +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           +    + M +   + N + Y++L++ Y   G  DE +++   M+S+  K N   Y+ +I+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
              K+   E A  ++ E ES   + D    NI+L       +   A+  Y R+   G + 
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
             +T+ ++  G  K    +  L+ F+     +     + R      + L + G  D A+ 
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNL--CLMDLKLEARTFNIMIDALLKVGRNDEAKD 672

Query: 443 LLVTLRNAGHV 453
           L V   + G V
Sbjct: 673 LFVAFSSNGLV 683



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/274 (19%), Positives = 119/274 (43%), Gaps = 5/274 (1%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD M    T +++LH Y  + +  EA   ++KM   G     + Y+ +++    NG+  
Sbjct: 263 MPDCM----TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + K+   P++ TY   L   A++            + +  I PD   +S L 
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K    ++A     +M ++    N V Y +++ +    G  ++ +  +++M+     
Sbjct: 379 CAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS 438

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
             +  Y  +I  L    ++E+AE +  E        +    N ++ ++    ++  +E  
Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           +  +V  G+KP   T+  L  GY   G+M++ ++
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK 532



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/301 (18%), Positives = 129/301 (42%), Gaps = 3/301 (0%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   + ++ K   +  A  +FE + D+   P     ++L+H      K   AE L+ +M 
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKE 226
           + G     + +N +++ +   G++ +  ++ + + +    P+V+TYN  +         +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K    +    + P+ ++YSTL + Y K+   E A    KEME      + + Y+ +L
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
                         ++ ++     ++  + Y  ++  L K    + A  ++     +   
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406
            + R  NI++ A +   + + A+  +    + G+ P Y T+ L+    + +G +E++ + 
Sbjct: 649 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 407 F 407
           F
Sbjct: 709 F 709



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 156/405 (38%), Gaps = 61/405 (15%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   +++ + +   S +A +   +M + G L   + YN ++        +DK  ++
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 198 LQELKKN-TSPDVVTYNLWLAA-CASQNDKETAEKAFL-ELKKTKIDPDWISYSTLTSLY 254
           L  + KN   PD +TYN  L   C+S   KE     FL +++   ++PD ++YS L    
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI--GFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLL---------------------------- 286
            K     +A      M KR  +     Y +LL                            
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371

Query: 287 -------SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA----EN 335
                    Y   G  D+ + ++ KM       N   Y  VI  L K G  E A    E 
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
           + DE  S        V N L+      N+ E AE     ++ +GI      +  +   + 
Sbjct: 432 MIDEGLSPGNI----VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 487

Query: 396 KKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG- 451
           K+G++   EK+ E   + IG     +  + LI    N     G +D A  LL  + + G 
Sbjct: 488 KEGRVIESEKLFELMVR-IGVKPNVITYNTLI----NGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 452 HVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
             +T  Y++L+  Y K  +M   L++ + M+   V  D  T  ++
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/231 (16%), Positives = 97/231 (41%), Gaps = 1/231 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L++ Y    K  EA  L+  M   G     + Y+ ++N Y    +++    + +E+
Sbjct: 513 TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +  SPD++TYN+ L           A++ ++ + ++    +  +Y+ +     K +L 
Sbjct: 573 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A    + +     +     ++ ++     +G  DE   ++    S     N   Y  +
Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
             +++  G  E+ + ++   E    T D  + N ++   + R ++  A ++
Sbjct: 693 AENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTY 743


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 182/445 (40%), Gaps = 46/445 (10%)

Query: 60  RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
           ++  E G    K+ +    + L K  R+  AL + E  + + D  L +            
Sbjct: 231 KEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCT----------QM 280

Query: 120 IRGLSSAENFFENLP--DKMRG----PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGF 171
           I GL  A  F E +    +MR     P+  +   LL  +++ K+    + ++  M   G 
Sbjct: 281 ISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGC 340

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKET--- 227
              P  +N +++ Y +        ++L  +      P  V YN+++ +  S  +  +   
Sbjct: 341 NPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDL 400

Query: 228 ---AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
              AEK + E+  +    + ++ +        M   +KA   +K M ++    +   YS 
Sbjct: 401 LALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSK 460

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           +++        ++   ++++M S+    +   YT +I S  K+G  E+A + +DE ES+ 
Sbjct: 461 VITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVG 520

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            +        LL AY+   Q+  A   ++R+V  G  P   T+  L  G  K G+ +K  
Sbjct: 521 CSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKAC 580

Query: 405 ECFKKAIGSVRKWVPDHRL-----ITAAYNKLEEQGDIDG---------AEHLLVTLRNA 450
           E + K IG+      D         + A N +     IDG         A+ LL  + + 
Sbjct: 581 EVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSN 640

Query: 451 G----HVSTEIYNSLLRTYAKAGKM 471
           G    H+   IY++L+  + K GK+
Sbjct: 641 GCEPNHI---IYDALIDGFCKVGKL 662



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/383 (18%), Positives = 155/383 (40%), Gaps = 26/383 (6%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + +D   K+  +  A ++F+ +      P   T +ALLH+Y++ K+  +A  +  +M 
Sbjct: 493 YTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV 552

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-----------------KKNTSPDVV 210
           + G     + Y+ +++     G+  K  ++  ++                   + +P+VV
Sbjct: 553 DAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVV 612

Query: 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270
           TY   +      +    A++    +     +P+ I Y  L   + K+   + A      M
Sbjct: 613 TYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRM 672

Query: 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330
            K         Y+SL+         D  +++  +M+      N   YT +I  L ++GE 
Sbjct: 673 SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732

Query: 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
           +KA  +    E      +      L+       +++M+   + +++T+G  P Y T+ +L
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792

Query: 391 TWGYLKKGQMEKVLECFKKAIGSV-RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
                  G +++      +   +   K+V  +  +   ++K         +  LL  L +
Sbjct: 793 INHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK-----KFIASLGLLEELES 847

Query: 450 AGHVS-TEIYNSLLRTYAKAGKM 471
            G VS   +Y  L+ +++KAG++
Sbjct: 848 HGMVSIAPVYGLLIDSFSKAGRL 870



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 39/335 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K   +  A+   + +      P+     AL+  + +  K   A+ +  +MS
Sbjct: 614 YGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMS 673

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQML-QELKKNTSPDVVTYNLWLAACASQNDKE 226
           +CG+L     Y  +++    + +LD   ++L Q L+ + +P+VVTY   +       + +
Sbjct: 674 KCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQ 733

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A K    ++K   +P+ ++Y++L     K    + +     +M  + C  N V Y  L+
Sbjct: 734 KALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLI 793

Query: 287 -------------SLYTNM----------GYKDEVLRIWKKMMSLFAKMNDAE------- 316
                        SL + M          GY   V    KK ++    + + E       
Sbjct: 794 NHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSI 853

Query: 317 ---YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI---LLAAYINRNQLEMAES 370
              Y  +I S  K G  EKA  ++ E   +S + +    +    L+ A    +QLE A  
Sbjct: 854 APVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFE 913

Query: 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
            Y+ +  KG+ P  + +  L  G +K  +  + L+
Sbjct: 914 LYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQ 948



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 117/270 (43%), Gaps = 5/270 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T  AL+    +  K  +A+ L++ MS  G     + Y+ +++ +   G+LD   ++   +
Sbjct: 613 TYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRM 672

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K    P V TY   + A       + A K   ++ ++   P+ ++Y+ +     ++   
Sbjct: 673 SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA   L  MEKR C  N V Y+SL+      G  D  L+++ +M++     N   Y  +
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE-SFYNRLVTKG 379
           I+     G  ++A ++  E +    T  P+      +     ++  +A       L + G
Sbjct: 793 INHCCAAGLLDEAHSLLSEMKQ---TYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHG 849

Query: 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
           +      + LL   + K G++EK LE  K+
Sbjct: 850 MVSIAPVYGLLIDSFSKAGRLEKALELHKE 879


>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 700

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 29/321 (9%)

Query: 133 LPDKMRG----PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           L +KM G    PD  TCSA++++Y  +    +A +L ++     +      ++ ++ +Y 
Sbjct: 223 LFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAATFSALIKMYS 282

Query: 187 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
             G  DK  ++ QE+K     P+VVTYN  L A         A+  + E+K   + PD+I
Sbjct: 283 MAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDFI 342

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +Y+ L  +Y      E+A    KEM+          Y+ LL++  ++GY D    I+ +M
Sbjct: 343 TYACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEM 402

Query: 306 MSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
            S      D+  ++ +I+   + G+  +AE + +E           V   L+  Y    +
Sbjct: 403 KSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKR 462

Query: 365 LEMAESFYNRLVTKGIKP----CYTTWELLTWGYLKKGQMEKVLECFKKA---IGSVRKW 417
            +     + +L+  GI P    C +   +LT     K +  K+ +C +KA   +GSV K+
Sbjct: 463 TDDVVKVFKQLLDLGIVPNDHFCCSLLNVLTQ--TPKEEYGKLTDCIEKANTKLGSVVKY 520

Query: 418 VPDHRLITAAYNKLEEQGDID 438
           +            +EE+GD D
Sbjct: 521 L------------VEEEGDGD 529



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 127/274 (46%), Gaps = 22/274 (8%)

Query: 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKAA 264
           S  VV YN+ L    +  D E  EK F E+ +  + P+  ++ST+ +   K +EL EK +
Sbjct: 169 SRHVVLYNVTLKLFRAVRDFEGEEKLFDEMLQRGVKPNNFTFSTMVNCANKPVELFEKMS 228

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
               E +  TC     AY    +L  N+   D+ + ++ + ++    ++ A ++ +I   
Sbjct: 229 GFGYEPDGITCSAMVYAY----ALSNNV---DKAVSLYDRAIAEKWCLDAATFSALIKMY 281

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G ++K   +Y E + +    +    N LL A +   +   A++ Y  + + G+ P +
Sbjct: 282 SMAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDF 341

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-AYNKL----EEQGDIDG 439
            T+  L   Y        +  C ++A+G  ++   +   +TA  YNKL     + G  D 
Sbjct: 342 ITYACLLEVY-------TIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDR 394

Query: 440 AEHLLVTLRNAGHVSTE--IYNSLLRTYAKAGKM 471
           A  +   ++++G    +   ++S++  Y+++GK+
Sbjct: 395 AAEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKV 428


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 167/390 (42%), Gaps = 14/390 (3%)

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEK 165
           G+  + L+ I     +  A +   +LP     PD  S  A+L      K+    + LME+
Sbjct: 193 GNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEE 252

Query: 166 MSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACAS 221
           M     + CP   + +N +++    NG  ++V ++L ++ ++  +PD+  Y   +     
Sbjct: 253 MVR---MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICK 309

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           +   + A +    +    + P+ + Y+TL       E  E+    L EM  + C  + V 
Sbjct: 310 EGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           ++ L+  +   G  D V+ + ++M+      +   YT VI+   K G  ++A  +     
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMT 429

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
           +     +     I+L    +  +   AE   ++++ +G      T+  L     KKG +E
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 460
           + +E  K+ +  V    PD    +   + L + G  D A  LL  + N G   +T IY+S
Sbjct: 490 QAIELLKQML--VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 547

Query: 461 LLRTYAKAGKMPLII--VERMQKDNVQMDA 488
           +    ++ G++  +I   + +Q   ++ DA
Sbjct: 548 IASALSREGRINKVIQMFDNIQDTTIRSDA 577



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 120 IRGLSSAENF--FENLPDKMRGPD------TCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           ++GL SAE +   E L  +M   D      T + L+  + QN        L+E+M   G 
Sbjct: 339 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGC 398

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEK 230
           +   + Y  ++N +   G +D+   +L+ +      P+ ++Y + L    S      AE 
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAED 458

Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
              ++ +     + I+++TL +   K  L E+A   LK+M    C  + ++YS+++    
Sbjct: 459 LMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 518

Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
             G  DE L +   M++     N   Y+ + S+L + G   K   ++D  +  +   D  
Sbjct: 519 KAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAV 578

Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
           + N ++++   R + E A  F   +V+ G  P  +T+ +L  G   +G +++  E   + 
Sbjct: 579 LYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638

Query: 411 I--GSVRKWVPDH 421
              G++RK +  H
Sbjct: 639 CSKGALRKHLMKH 651



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 4/325 (1%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KN 204
           ++ +     + A+A A++++M   G    P  Y+ +L      G      ++L++L  + 
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
            + DV   NL L A   Q   + A     +L     +PD +SY+ +       +      
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
             ++EM +  C  N V +++L+S     G  + V  +  +M       +   Y  +I  +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
            K G  + A  I +   S     +    N LL    +  + E  E     +  K      
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+ +L   + + G +++V+E  ++ +  V   +PD    T   N   ++G ID A  LL
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQML--VHGCMPDVITYTTVINGFCKEGLIDEAVMLL 425

Query: 445 VTLRNAGHVSTEI-YNSLLRTYAKA 468
            ++   G     I Y  +L+    A
Sbjct: 426 KSMTACGCKPNTISYTIVLKGLCSA 450


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 2/264 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203
           S+L+ +  + ++   A +L ++M   G     L +  ++      G++    +  +++ K
Sbjct: 119 SSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK 178

Query: 204 N-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           +   P+V  YN+ L    S    E A   F E+K     PD ++Y+TL     K    E+
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
                + M       N + +S+L+      G  ++ L ++  M+    K N   YT +IS
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV-TKGIK 381
            L +  +  +A  ++++        D    N L+A Y  R  ++ AE  Y  +    G++
Sbjct: 299 GLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQ 358

Query: 382 PCYTTWELLTWGYLKKGQMEKVLE 405
           P   T+  L  G+ K G++ +  E
Sbjct: 359 PTIVTFNTLIDGFCKLGKLGRANE 382



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 4/332 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T S+++ S V+  K  E+  ++E+M   G       +N ++  +  +  ++K  ++ Q +
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            +    PD V+Y++ +   A     + + K   E+      P   +YS+L     K    
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           + A++   EM +     +R+ +  L+      G   +    +K+M     + N   Y  +
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L   G+ E+A  ++ E +S S + D    N LL A     ++E     +  +   G 
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
            P   T+  L  G  + G++EK LE F   + +  K  P+    T   + L     +  A
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK--PNKYTYTTLISGLCRAEKVIQA 309

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L   +  A      + YNSL+  Y K G M
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSM 341



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 121/295 (41%), Gaps = 5/295 (1%)

Query: 123 LSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           +  A   ++++ +    PD  S   L+H   +  K  E+  ++ +M   G       Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPD-VVTYNLWLAACASQNDKETAEKAFLELKKT 238
           ++       ++D    +  E+ +    PD ++ Y L L  C +   K+ +E+ F ++ K 
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASER-FKQMPKH 179

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
              P+   Y+ L          E+A T   EM+  +C  + V Y++LL         +E 
Sbjct: 180 GCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEG 239

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358
            ++++ M +     N   ++ +I  L + GE EKA  ++          +      L++ 
Sbjct: 240 CKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISG 299

Query: 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
                ++  A   + ++    I P    +  L  GY K+G M++  + +++  G 
Sbjct: 300 LCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/272 (19%), Positives = 113/272 (41%), Gaps = 7/272 (2%)

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
           KN + +V TY+  + +   +   E + K   E+     +PD  +++ +   + +    EK
Sbjct: 4   KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 63

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    + M +   + + V+Y  L+     +G  DE L+I  +M+      +   Y+ ++ 
Sbjct: 64  AREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVR 123

Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNI--LLAAYINRNQLEMAESFYNRLVTKGI 380
           +L K    + A +++DE   I G   P       L+       +++ A   + ++   G 
Sbjct: 124 ALAKARRVDHASSLFDEM--IRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGC 181

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440
           +P    + +L  G    GQ+E+    F +         PD        + + +   ++  
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEM--KSHSCSPDVVTYNTLLDAVCKARRVEEG 239

Query: 441 EHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
             L   +R AG+V   I +++L+    + G++
Sbjct: 240 CKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 12/268 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   LD + K R +      FE +      P+  T S L+H   +  +  +A  +   M 
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 168 ECGFLKCPLPYNHMLNLYISN-GQLDKVPQMLQELKKNTS----PDVVTYNLWLAACASQ 222
           E G   C  P  +     IS   + +KV Q  +  +K T     PD V YN  +A    +
Sbjct: 283 EAG---CK-PNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 338

Query: 223 NDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
              + AEK + E+     + P  ++++TL   + K+    +A   + EM  +    +   
Sbjct: 339 GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCT 398

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y  L++  +     DE L ++K+M      ++       +  L K G  ++A  +++   
Sbjct: 399 YRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 458

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAE 369
                 +P    IL  + I   ++E A+
Sbjct: 459 KSGAVPNPETFRILSESLIKLGRVEDAQ 486



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 102/236 (43%), Gaps = 5/236 (2%)

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           ++   I  +  +YS++    +K   PE++   L+EM    C  +  A++ ++  +     
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
            ++   +++ M+    K ++  Y  +I  L K+G+ +++  I  E      T   +  + 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
           L+ A     +++ A S ++ ++  G  P    +  L  G  + G+++   E FK+     
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQM--PK 178

Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKA 468
               P+  +     + L   G ++ A  L   +++    S ++  YN+LL    KA
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-CSPDVVTYNTLLDAVCKA 233



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 82/199 (41%), Gaps = 2/199 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+    + +K  +A  L EKM++       + YN ++  Y   G +D+  ++ +E+
Sbjct: 292 TYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351

Query: 202 KKNTS--PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259
                  P +VT+N  +           A +   E+    +  D  +Y  L +   +   
Sbjct: 352 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATK 411

Query: 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
            ++A    K+M ++    + V+  S +      G  D+   +++      A  N   +  
Sbjct: 412 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRI 471

Query: 320 VISSLVKLGEFEKAENIYD 338
           +  SL+KLG  E A+ + +
Sbjct: 472 LSESLIKLGRVEDAQKLME 490


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 5/267 (1%)

Query: 146 LLHSYVQNKKSAEA-EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
           L+      K++ +A + +  +M E G+      YN ++    +  +  +  ++L  +  N
Sbjct: 70  LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTAN 129

Query: 205 ----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
                SPDVV+YN+ +     + + + A   F E+      PD ++YS++     K +  
Sbjct: 130 GGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAM 189

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA  +L++M  +    N   Y+SL+  Y ++G   E +R+ KKM     ++N   Y  +
Sbjct: 190 DKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNML 249

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I    K+G   +A +I+D         +      LL  Y  +  L       + ++  GI
Sbjct: 250 IDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGI 309

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECF 407
              +  + +L + Y K   ++K +  F
Sbjct: 310 PIEHRVFNILIYAYAKHETVDKAMAVF 336



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ--YDIKLVSGDYAVHL 114
           +  R+  E G+T   +  N +++ L   K+ + ALE+   M     Y+       Y + +
Sbjct: 86  MVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVI 145

Query: 115 DLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           D + K   +  A   F  +P +   PD  T S+++    + +   +AEA +++M   G +
Sbjct: 146 DGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVM 205

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKA 231
               PYN +++ Y S GQL +  ++L+++       +VVTYN+ +           A   
Sbjct: 206 PNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSI 265

Query: 232 FLELKKTKIDPDWISYSTLTSLY 254
           F  + +    P+  +Y +L   Y
Sbjct: 266 FDSMVRRGQKPNATTYCSLLHGY 288



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 113/295 (38%), Gaps = 47/295 (15%)

Query: 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 267
           +VV   L    C  +   +  +  F  + +    PD  SY+ L    IK    EK     
Sbjct: 64  NVVLNQLIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNAL----IKGLCAEK----- 114

Query: 268 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327
                    K++ A   LL +  N GY                  +   Y  VI  L K 
Sbjct: 115 ---------KSQEALELLLHMTANGGYN--------------CSPDVVSYNIVIDGLFKE 151

Query: 328 GEFEKAENIYDEWESISGTGDPRVPNIL-----LAAYINRNQLEMAESFYNRLVTKGIKP 382
           GE +KA  ++ E   + G G P  P+++     +        ++ AE+   +++ KG+ P
Sbjct: 152 GEVDKAYFLFHE---MPGQGFP--PDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP 206

Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKK-AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
               +  L  GY   GQ+ + +   KK + G ++  V  + ++   Y K+    +     
Sbjct: 207 NTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIF 266

Query: 442 HLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDAETQKVL 494
             +V  R     +   Y SLL  YA  G +  +  +++ M +D + ++     +L
Sbjct: 267 DSMV--RRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNIL 319


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 167/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSAKTSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDIPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    YN +  + +  G+     
Sbjct: 76  LEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L    +  +A +I  E  +      D  +   L+++  N   L+ A     
Sbjct: 256 ITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKL 431
            ++   +      + +L   + K GQ ++ ++   K I       P     L  +AYN +
Sbjct: 316 AMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPM 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEG 417



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 115/297 (38%), Gaps = 46/297 (15%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++ Y + KK  EAE    +M         + Y  
Sbjct: 166 VETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++  Y+S  Q+D   ++++E                                  +K   I
Sbjct: 226 LIKGYVSVDQVDDALRLVEE----------------------------------MKGFGI 251

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            P+ I+YSTL       E   +A + LKE M+K     +   +  L+S   N G  D   
Sbjct: 252 KPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAA 311

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--------ESISGTGDPRV 351
            + K M+ L        Y  +I +  K G++++A  + D+            +   +P  
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSA 371

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408
            N ++    N  Q   AE+   +L+  G++   T    L  G+ ++G  +   E  K
Sbjct: 372 YNPMIEYLCNNGQAAKAEALVRQLLKLGVQDP-TALNTLIRGHSQEGSPDSAFELLK 427


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 155/364 (42%), Gaps = 39/364 (10%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+ ++ +  +   AE L++ M E G     + +N ++N     G+++   ++  E+
Sbjct: 194 TYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEM 253

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+  +PD V+YN  +           A   F E+ +  I PD +++++L  +  K    
Sbjct: 254 VKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNL 313

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A   ++EM +R  + N + +++L+  +   G+ D+ L   ++M     + +   Y  +
Sbjct: 314 ERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNAL 373

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY-----------INRNQLEM-- 367
           I+    +G  ++A  +  E E+     D    + +L+AY           +N+  LE   
Sbjct: 374 INGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGV 433

Query: 368 ----------------------AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                                 A   +  +++ G++P   T+  L  G+ K+G +E+ L 
Sbjct: 434 LPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALS 493

Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRT 464
              + + +    +PD    +   N L +      A+ LL  L +   V   I Y++L+R 
Sbjct: 494 LHDEMVKA--GVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRC 551

Query: 465 YAKA 468
              A
Sbjct: 552 CRNA 555



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 139/356 (39%), Gaps = 41/356 (11%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAA-C-ASQNDK--------- 225
           YN ++      G   +   +L++++     P+ VTYN  +AA C A + D+         
Sbjct: 160 YNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMR 219

Query: 226 ------------------------ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
                                   E A K F E+ K  + PD +SY+TL   Y K+    
Sbjct: 220 EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSH 279

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
           +A +   EM ++    + V ++SL+ +    G  +  + + ++M     +MN+  +T +I
Sbjct: 280 EALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALI 339

Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
               K G  + A     E             N L+  Y    +++ A      +  KG+K
Sbjct: 340 DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399

Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 441
           P   T+  +   Y K G      +  ++ + +    +PD    ++    L E+  +  A 
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLEN--GVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 442 HLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            L   + + G    E+ Y SL+  + K G +   L + + M K  V  D  T  VL
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 156/362 (43%), Gaps = 21/362 (5%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T +AL+  + +     +A   + +M +C      + YN ++N Y   G++D+  ++++E+
Sbjct: 334 TFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREM 393

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + K   PDVVTY+  L+A     D  +A +   ++ +  + PD I+YS+L  +  + +  
Sbjct: 394 EAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRL 453

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A    K M     + + V Y+SL+  +   G  +  L +  +M+      +   Y+ +
Sbjct: 454 GDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513

Query: 321 ISSLVKLGEFEKAENI---------------YDEWESISGTGDPRVPNILLAAYINRNQL 365
           I+ L K    ++A+ +               YD         + +    LL  +  +  +
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLM 573

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425
             A+  Y  ++ +      + + +L  G+ ++G + K L   K+ +     + P+     
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQC--GFAPNSTSTI 631

Query: 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRTYAKAGKMPLI--IVERMQKD 482
           +    L E+G +  A+ ++  L N   ++  E   +L+    K G +  +  ++  M +D
Sbjct: 632 SLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARD 691

Query: 483 NV 484
            +
Sbjct: 692 GL 693



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 125/286 (43%), Gaps = 3/286 (1%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           I K   +  A   F+ +  +   PD  S   L+  Y +   S EA ++  +M+  G +  
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
            + +  ++++    G L++   +++E++ +    + +T+   +     +   + A  A  
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
           E+++ +I P  + Y+ L + Y  +   ++A   ++EME +  + + V YS++LS Y   G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353
                 ++ ++M+      +   Y+ +I  L +      A  ++    S+    D     
Sbjct: 417 DTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYT 476

Query: 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            L+  +     +E A S ++ +V  G+ P   T+ +L  G  K  +
Sbjct: 477 SLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522



 Score = 38.5 bits (88), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 22/274 (8%)

Query: 127 ENFFEN--LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
           +   EN  LPD +    T S+L+    + K+  +A  L + M   G     + Y  +++ 
Sbjct: 426 QQMLENGVLPDAI----TYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDG 481

Query: 185 YISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           +   G +++   +  E+ K    PDVVTY++ +   +     + A++   +L   +  P 
Sbjct: 482 HCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPA 541

Query: 244 WISYSTLTSLYIKMELPEKAA--------TTLKEMEK-------RTCRKNRVAYSSLLSL 288
            I Y  L       EL    A          + E +K       R    +   YS L+  
Sbjct: 542 NIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHG 601

Query: 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348
           +   G   + L   K+M+      N      +I  L + G   +A+ +  +  +     D
Sbjct: 602 HCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLAD 661

Query: 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
                 L+   +    ++      + +   G+ P
Sbjct: 662 AEASKALIDLNLKEGNVDAVLDVLHGMARDGLLP 695


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 165/421 (39%), Gaps = 48/421 (11%)

Query: 116 LISKIRGLSSAENFFE---NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172
           ++ ++     A  FF+   N P       TC+ LL+++V+ K+  EA  L+++  E    
Sbjct: 49  VLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCF 108

Query: 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELK------------------------------ 202
              + Y  ++N +   GQ+D+  ++L E+K                              
Sbjct: 109 PNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQ 168

Query: 203 -----KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-----KIDPDWISYSTLTS 252
                +  SP+V+TYN  +      N  + A + F +++K        +PD ISYST+  
Sbjct: 169 FKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVID 228

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K +  +KA    K M    C  N V YSSL+     +    E L +   M      +
Sbjct: 229 ALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGI 288

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N  ++  ++ +L K  E EKA   ++         +    N+ +       +++ A    
Sbjct: 289 NIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRIL 348

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432
             +V   + P   T+  +  G+ K G+M+K  + F + +  V + +P         +   
Sbjct: 349 LEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM--VHECIPHPVTFMTLLHGFS 406

Query: 433 EQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAE 489
           E      A  +   + NAG +   + YN L+     A  +   L I  +M++   Q D  
Sbjct: 407 EHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCN 466

Query: 490 T 490
           T
Sbjct: 467 T 467



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 147/341 (43%), Gaps = 19/341 (5%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIK------LVSGDYAVHLDLISKIRGLSSAEN 128
           N +V  L K  R   ALE+ + ME +Y+        ++S  Y+  +D + K + +  A  
Sbjct: 184 NTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVIS--YSTVIDALCKAQRVDKAYE 241

Query: 129 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
           +F+ +      P+  T S+L+    +  + +E   L+  M E GF    + +N ML+   
Sbjct: 242 YFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALW 301

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
            N + +K  Q  + L K    P+VVTYN+ +         + A +  LE+ ++K+ PD I
Sbjct: 302 KNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVI 361

Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
           +YS++   + K    +KA      M    C  + V + +LL  ++      E  R+ + M
Sbjct: 362 TYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM 421

Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365
           ++         Y  ++  +      E A  IY + +      D      L+       ++
Sbjct: 422 VNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRV 481

Query: 366 EMAESFYNRLVTKGIKP----CYTTWELLTWGYLKKGQMEK 402
           + A+ F + +    + P    C+   E+L     K+G++++
Sbjct: 482 DEAKEFLDVMEADNVVPNGAICHALVEVLC----KQGEVDE 518



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 39/275 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENL--PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  +D   K   +  A++ F  +   + +  P T   LLH + ++KKS EA  + E M 
Sbjct: 363 YSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 422

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227
             GF+                                  P + TYN+ +      +  E+
Sbjct: 423 NAGFI----------------------------------PGLQTYNVLMDCVCGADSVES 448

Query: 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287
           A + + ++K+ K  PD  +Y+ L     +    ++A   L  ME      N     +L+ 
Sbjct: 449 ALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE 508

Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
           +    G  DE   +   ++ +  +     +  ++  L    ++E A  +     S     
Sbjct: 509 VLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKL---LRSPGFVA 565

Query: 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
           D    ++ +A      + + A     ++V KG++P
Sbjct: 566 DAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRP 600



 Score = 42.0 bits (97), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 8/202 (3%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           YA  +  + + R +  A+ F + +      P+   C AL+    +  +  EA ++++ + 
Sbjct: 468 YAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVV 527

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS--PDVVTYNLWLAACASQNDK 225
           E G      P      + +    L K  +   +L ++     D  TY+L +A        
Sbjct: 528 EVGCQ----PLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKP 583

Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
           + A +   ++    + PD  +Y  +      ++  E A    ++M  R C    V Y+ L
Sbjct: 584 DEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLL 643

Query: 286 LSLYTNMGYKDEVLRIWKKMMS 307
           +    +    DE  RI++ M++
Sbjct: 644 IGEACSADMADEAFRIFEAMVA 665


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 167/358 (46%), Gaps = 16/358 (4%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIR 121
           +E   +  KY  + ++    K   +  AL    W++ +++D   V GD  ++ +LI   R
Sbjct: 1   RERALSPDKYTYSTLITHFGKEGLFDDALS---WLQKMEHD--RVRGDLXLYSNLIELSR 55

Query: 122 GL---SSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
            L   S A + F  L      PD    +++++ + + K   EA +L+ +M   G +   +
Sbjct: 56  KLCDYSKAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTV 115

Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            Y  +L +Y+ N +  +   +  E+++     D+ T N+ +         + A+K F  +
Sbjct: 116 SYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSM 175

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
           +K  ++P+ +SY+TL  +Y   EL  +A    + M+++   +N V Y+S++ +Y      
Sbjct: 176 RKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEH 235

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++++  S     D  +   +
Sbjct: 236 EKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTM 295

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
           + AY     +  A+   + L T    P  T  ++L       G+ME+    F++AI +
Sbjct: 296 IVAYERAGLVSHAKRLLHELKTPDNIPRDTAIQILA----GSGRMEEATWVFRQAIDA 349



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 118/292 (40%), Gaps = 37/292 (12%)

Query: 85  KRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143
           K++  AL V  E  E++  + L + +  + +D+  ++     A+  F ++      P+  
Sbjct: 128 KKFIEALSVFAEMREIKCLLDLTTCN--IMIDVYGQLGMAKEADKLFWSMRKLGVEPNVV 185

Query: 144 S--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           S   LL  Y   +   EA  L   M      +  + YN M+ +Y    + +K   ++QE+
Sbjct: 186 SYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   P+ +TY+  ++        + A   F +L+ + I+ D + Y T+   Y +  L 
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLV 305

Query: 261 EKAATTLKE---------------------MEKRTCR----------KNRVAYSSLLSLY 289
             A   L E                     ME+ T            K+   +  ++ L+
Sbjct: 306 SHAKRLLHELKTPDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLF 365

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           +       V+ ++ KM  L    +      V+++  KL +FEKA ++Y E +
Sbjct: 366 SKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEKANDVYLEMQ 417


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 139/323 (43%), Gaps = 5/323 (1%)

Query: 84  LKRYKHALEVCEWMELQYDIKLVSGD--YAVHLDLISKIRGLSSAENFFENLPDK--MRG 139
           + R+  A E C +     D  L      + V +  + ++  L+SA+N F+ +  +   R 
Sbjct: 91  MSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRT 150

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
             + + ++    +      AE L  +MSE G       Y  ++      G+++    + +
Sbjct: 151 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 210

Query: 200 EL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           ++  +   P+ V + + + A   + D ET  +   E+++  + PD ++Y+ + +   +  
Sbjct: 211 KMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRAR 270

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             + A+  + EM     R + V Y++L+  Y      D  + I + M++    +++  YT
Sbjct: 271 DLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYT 330

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +IS L K G    AE +  E        D     +++ A+  +  ++        +  K
Sbjct: 331 ALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNK 390

Query: 379 GIKPCYTTWELLTWGYLKKGQME 401
           G KP   T+ ++  G+ K GQM+
Sbjct: 391 GRKPGVVTYNVIMNGFCKLGQMK 413



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/345 (17%), Positives = 130/345 (37%), Gaps = 44/345 (12%)

Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
           P +C+ L+  +     + EA A   ++ + G       +N ++   +  G+L     +  
Sbjct: 84  PTSCTGLMSRF---PTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFD 140

Query: 200 ELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           E++ +     VV++N  ++      D + AE     + +  + PD  +Y  L     ++ 
Sbjct: 141 EMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVG 200

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             E A    ++M  R  + N V ++ L+  +   G  + +L + ++M     + +   Y 
Sbjct: 201 RIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYN 260

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +++ L +  + + A  I  E  S                                    
Sbjct: 261 AIVNGLCRARDLKSASGIVVEMRS-----------------------------------A 285

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G++P   T+  L  GY K+ +++  +E  +  +        D    TA  + L + G   
Sbjct: 286 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGL--DEVTYTALISGLSKAGRSA 343

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAG--KMPLIIVERMQ 480
            AE +L  +  AG       Y  ++  + + G  K  L +++ MQ
Sbjct: 344 DAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 388



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALME--- 164
           Y   +  + ++  +  A   FE +  +   P+    + L+ ++    K  +AE ++E   
Sbjct: 189 YGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHC---KKGDAETMLELHR 245

Query: 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQN 223
           +M E G     + YN ++N       L     ++ E++     PD VTY           
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTY----------- 294

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
                                   +TL   Y K E  + A    + M       + V Y+
Sbjct: 295 ------------------------TTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYT 330

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+S  +  G   +  R+  +MM    + ++  YT VI +  + G+ +    +  E ++ 
Sbjct: 331 ALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNK 390

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
                    N+++  +    Q++ A+   N ++  G+ P   T+ +L  G+ K G++  +
Sbjct: 391 GRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDI 450

Query: 404 LECFKKAIGSV 414
            E  K A G+V
Sbjct: 451 EE-LKSAKGTV 460


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 183/428 (42%), Gaps = 35/428 (8%)

Query: 75  NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI---RGLSSAENFFE 131
           N ++        ++ ALEVC+ M        V  D   H  ++S     R  S A ++FE
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNG----VGPDLVTHNIVLSAYKSGRQYSKALSYFE 272

Query: 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEAL------MEKMSECGFLKCPLPYNHMLNLY 185
            +      PDT +  +  Y  +K    ++AL       EK +EC      + +  +++LY
Sbjct: 273 LMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAEC--RPDVVTFTSIMHLY 330

Query: 186 ISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
              G+++    + + +  +   P++V+YN  + A A      TA     ++K+  I PD 
Sbjct: 331 SVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDV 390

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           +SY+ L + Y +   P KA      M K   + N V Y++L+  Y + G+  E + I+++
Sbjct: 391 VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQ 450

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M     K N      ++++  +  +    + +    +S     +    N  + +YIN  +
Sbjct: 451 MEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAE 510

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
           LE A + Y  +  K +K    T+ +L  G  +  +  + +   K+        + D  + 
Sbjct: 511 LEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKE--------MEDLSI- 561

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTY---AKAGKMPLIIVERMQ 480
                 L ++G +  AE +   ++ AG     I Y S+L  Y    K GK   + +E M+
Sbjct: 562 -----PLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLE-ME 615

Query: 481 KDNVQMDA 488
            + ++ D+
Sbjct: 616 ANGIEPDS 623



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 207/456 (45%), Gaps = 23/456 (5%)

Query: 57  ITMRKWKEEGHTVHKYELNRIVRE-----LRKLKRYKHALEVC----EWMELQYDIKLVS 107
           + + +W+E    ++ + + R  R+     +R+L R +  +E+C    +WM++Q +    +
Sbjct: 86  MALNRWEEVDGVLNSW-VGRFARKNFPVLIRELSR-RGCIELCVNVFKWMKIQKNYCARN 143

Query: 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEK 165
             Y + + L ++   +  A   F  +      PD  T  AL++++ +  +   A  LM+ 
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 203

Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQND 224
           M           YN+++N   S+G   +  ++ +++  N   PD+VT+N+ L+A  S   
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM-EKRT-CRKNRVAY 282
              A   F  +K  K+ PD  +++ +     K+    +A      M EKR  CR + V +
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323

Query: 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342
           +S++ LY+  G  +    +++ M++   K N   Y  ++ +    G    A ++  + + 
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383

Query: 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402
                D      LL +Y    Q   A+  +  +  +  KP   T+  L   Y   G + +
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAE 443

Query: 403 VLECFKKA-IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNS 460
            +E F++     ++  V     + AA ++ +++ ++D    +L   ++ G +++T  YNS
Sbjct: 444 AVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVD---TVLSAAQSRGINLNTAAYNS 500

Query: 461 LLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
            + +Y  A ++   + + + M+K  V+ D+ T  +L
Sbjct: 501 AIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 118/319 (36%), Gaps = 40/319 (12%)

Query: 123 LSSAENFFENLPDKMRGPDTCSA--LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           L+ A   F  +      P+  S   LL +  ++KK    + ++      G       YN 
Sbjct: 441 LAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNS 500

Query: 181 MLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLA-ACASQNDKET----------- 227
            +  YI+  +L+K   + Q + KK    D VT+ + ++ +C      E            
Sbjct: 501 AIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLS 560

Query: 228 -----------AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
                      AE  F ++K    +PD I+Y+++   Y   E   KA     EME     
Sbjct: 561 IPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 620

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
            + +A S+L+  +   G    V  +   M         A +  + S+   L E+++A ++
Sbjct: 621 PDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDL 680

Query: 337 YDEWESISGTGDPRVP-------NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
                      DP +P       N +L  +    ++E     + +++  G+     T+ +
Sbjct: 681 IQ-------MMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 733

Query: 390 LTWGYLKKGQMEKVLECFK 408
           L    L  G   K +E  +
Sbjct: 734 LLEHLLAVGNWRKYIEVLE 752


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 154/337 (45%), Gaps = 13/337 (3%)

Query: 96  WMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSY 150
           W++ + +   V GD  +  +LI   R L   S A + F  L      PD  +  A+++ +
Sbjct: 16  WLQ-KMEXDXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXAYNAMINVF 74

Query: 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS-PDV 209
            + K   EA +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+
Sbjct: 75  GKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMREXKCLXDL 134

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
            T N+ +         + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + 
Sbjct: 135 XTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRL 194

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+++   +N V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+
Sbjct: 195 MQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 254

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
            ++A  ++ +  S     D  +   ++ AY     +  A+   + L      P  T   +
Sbjct: 255 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 314

Query: 390 LTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLI 424
           L       G++E+    F++AI  G V+      R+I
Sbjct: 315 LAGA----GRIEEATYVFRQAIDSGEVKDITVFERMI 347



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 109/271 (40%), Gaps = 42/271 (15%)

Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSEC 169
           + +D+  ++     A+  F  +      P+  S   LL  Y   +   EA  L   M   
Sbjct: 139 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 198

Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA 228
              +  + YN M+ +Y    + +K   ++QE++ +   P+ +TY+  ++        + A
Sbjct: 199 NIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRA 258

Query: 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288
              F +L+ + ++ D I + T+   Y +  L   A   L E++    R + +   + + +
Sbjct: 259 AMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHI 314

Query: 289 YTNMGYKDE---VLR------------IWKKMMSLFAK----MNDAEY------------ 317
               G  +E   V R            ++++M+ L +K    MN  E             
Sbjct: 315 LAGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNVVEVFDKMRGLGYFPD 374

Query: 318 ----TCVISSLVKLGEFEKAENIYDEWESIS 344
                 V+++  KL EF+KA +IY E + + 
Sbjct: 375 SNVIAVVLNAYGKLHEFDKASDIYMEMQEVG 405


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 42  VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 101

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 102 SLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVY 161

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 162 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 221

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 222 VTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 281

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 282 LRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 337

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 338 IEEATYVFRQAIDAGEVKDITVFERMI 364



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/297 (17%), Positives = 133/297 (44%), Gaps = 21/297 (7%)

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           ++  SPD  TY+  +     +   + A     ++++ ++  D + YS L  L  K+    
Sbjct: 4   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 63

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-------ND 314
           KA +    +++     + VAY+++++++          +++++  SL ++M       N 
Sbjct: 64  KAISIFSRLKRSGFTPDLVAYNAMINVFGKA-------KLFREARSLISEMKXSGVMPNT 116

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
           A Y+ +++  V+  +F +A +++ E   +    D    NI++  Y      + A+  +  
Sbjct: 117 ASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 176

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVPDHRLITAAYNKLEE 433
           +   GI+P   ++  L   Y       + +  F+     ++ + V  +  +   Y K  E
Sbjct: 177 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLE 236

Query: 434 QGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMD 487
               + A +L+  +++ G     I Y++++  + K GK+    ++ ++++   V++D
Sbjct: 237 H---EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 290



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++++  Y +  +  +A  L+++M   G     + Y+ +++++   G+LD+   + Q+L
Sbjct: 223 TYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 282

Query: 202 KKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +    D + +   + A         A++   ELK+    PD I   T   +       
Sbjct: 283 RSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRI 338

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           E+A    ++       K+   +  ++ L +       V+ ++ KM  L    +      V
Sbjct: 339 EEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALV 398

Query: 321 ISSLVKLGEFEKAENIY 337
           +++  KL EF+KA ++Y
Sbjct: 399 LNAYGKLHEFDKANDVY 415


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 155/344 (45%), Gaps = 24/344 (6%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + L+ +  + ++S++A  L+E+M + G     + +N ++      GQL++    
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGR 408

Query: 198 LQEL-KKNTSPDVVTYNLWLAA-CASQNDKETAEKAFL---ELKKTKIDPDWISYSTLTS 252
           L+ + ++  +PDV+TYN  + A C ++N      KAF+   E+ ++ +  D  + +TL  
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARN----VAKAFVLMDEMVRSGLKMDTFTLNTLLY 464

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
              K +  E+A   L+   +R    + V+Y ++++ Y      +  L +W +M       
Sbjct: 465 NLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTP 524

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           +   Y  +I  L  +G+  +A +  +E        D    NI++ AY     LE A  F+
Sbjct: 525 SIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFH 584

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-AYNKL 431
           N+++    KP   T   L  G    G++EK ++ F+        W    + +    YN L
Sbjct: 585 NKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFE-------SWAEKGKKVDVITYNTL 637

Query: 432 EE----QGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGK 470
            +     GD+D A H    +   G       YN +L   ++AG+
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGR 681



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 3/267 (1%)

Query: 139 GPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
            PD  T + L+ +Y + +  A+A  LM++M   G        N +L       + ++  +
Sbjct: 418 APDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEE 477

Query: 197 MLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
           +L+   ++   PD V+Y   +AA   +N  E A   + E+ K K+ P   +Y+TL     
Sbjct: 478 LLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLC 537

Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315
            +    +A   L E+ K+    +   Y+ ++  Y   G  ++  +   KM+  + K +  
Sbjct: 538 TIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVV 597

Query: 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRL 375
               +++ L   G+ EKA  +++ W       D    N L+ A      ++ A  F+  +
Sbjct: 598 TCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADM 657

Query: 376 VTKGIKPCYTTWELLTWGYLKKGQMEK 402
             +G++P   T+ ++     + G+ E+
Sbjct: 658 EARGLQPDAFTYNVVLSALSEAGRSEE 684



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 1/199 (0%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P+  T+NL +    S+     A      ++   + PD ++Y+TL   + +  +  +A T 
Sbjct: 208 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTL 267

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L  M+K      R  Y++L+S Y  +G+  +   + + M +   + +   Y  + + L +
Sbjct: 268 LARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQ 327

Query: 327 LGEFEKAENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385
            G+ ++A  + DE E +S  + D    N L+ A     +   A +    +  KG+K    
Sbjct: 328 AGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLV 387

Query: 386 TWELLTWGYLKKGQMEKVL 404
           T  ++  G  ++GQ+E+ L
Sbjct: 388 THNIVVKGLCREGQLEEAL 406



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 117/296 (39%), Gaps = 5/296 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +++ + S G L      L  ++    SPDVVTYN  L A   +     A      +K
Sbjct: 213 FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK 272

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K  I P   +Y+TL S Y ++   ++A   ++ M       +   Y+ L +     G  D
Sbjct: 273 KEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVD 332

Query: 297 EVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
           E  ++  +M  L     D   Y  ++ +  K      A N+ +E             NI+
Sbjct: 333 EAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIV 392

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415
           +       QLE A      +  +G+ P   T+  L   Y K   + K      + + S  
Sbjct: 393 VKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGL 452

Query: 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGK 470
           K +    L T  YN  +E+   + AE LL +    G V  E+ Y +++  Y K  K
Sbjct: 453 K-MDTFTLNTLLYNLCKEK-RYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENK 506



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 1/239 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + LL++  + K+  EAE L+    + GF+   + Y  ++  Y    + +    +  E+
Sbjct: 458 TLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEM 517

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K+  +P + TYN  +    +      A     EL K  + PD  +Y+ +   Y K    
Sbjct: 518 SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDL 577

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           EKA     +M +   + + V  ++L++     G  ++ +++++       K++   Y  +
Sbjct: 578 EKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTL 637

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           I +L K G+ + A + + + E+     D    N++L+A     + E A++  ++L   G
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 95/463 (20%), Positives = 158/463 (34%), Gaps = 112/463 (24%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+H++      A+A + +  M   G     + YN +L  +   G L +   +L  +
Sbjct: 212 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARM 271

Query: 202 KK----------NT--------------------------SPDVVTYNLWLAACASQNDK 225
           KK          NT                           PD+ TYN+  A        
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331

Query: 226 ETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEME------------- 271
           + A K   E++   I  PD ++Y+TL     K +    A   L+EM              
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 272 --KRTCRKNR--------------------VAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
             K  CR+ +                    + Y++L+  Y       +   +  +M+   
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSG 451

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA- 368
            KM+      ++ +L K   +E+AE +           D      ++AAY   N+ E A 
Sbjct: 452 LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPAL 511

Query: 369 ------------ESFY----------------------NRLVTKGIKPCYTTWELLTWGY 394
                        S Y                      N L+ KG+ P  TT+ ++   Y
Sbjct: 512 YLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAY 571

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HV 453
            K+G +EK  +   K + +  K  PD        N L   G ++ A  L  +    G  V
Sbjct: 572 CKEGDLEKAFQFHNKMLENYFK--PDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKV 629

Query: 454 STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
               YN+L++   K G +   L     M+   +Q DA T  V+
Sbjct: 630 DVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVV 672



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 3/146 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  T + ++H+Y +     +A     KM E  F    +  N ++N    +G+L+K  ++
Sbjct: 559 PDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKL 618

Query: 198 LQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            +   +K    DV+TYN  + A     D +TA   F +++   + PD  +Y+ + S   +
Sbjct: 619 FESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSE 678

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAY 282
               E+A   L ++++      R +Y
Sbjct: 679 AGRSEEAQNMLHKLDESGKLSERFSY 704



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 60/310 (19%), Positives = 121/310 (39%), Gaps = 16/310 (5%)

Query: 196 QMLQELKK--NTSPDVVTYNLWLAACA--SQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           Q+L   ++  +  P +   N  L+A A       + +   F  L   ++ P+  +++ L 
Sbjct: 158 QLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLV 217

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             +        A +TL  M+      + V Y++LL  +   G   E   +  +M      
Sbjct: 218 HTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIA 277

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
              A Y  ++S+  +LG  ++A N+ +   +     D    N+L A      +++ A   
Sbjct: 278 PTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKL 337

Query: 372 YNRLVTKGI-KPCYTTWELLT---WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
            + +    I  P   T+  L    + Y +      +LE  +     V+  +  H ++   
Sbjct: 338 KDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK--GVKSSLVTHNIVVKG 395

Query: 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNV 484
              L  +G ++ A   L  +   G     I YN+L+  Y KA  +    ++++ M +  +
Sbjct: 396 ---LCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGL 452

Query: 485 QMDAETQKVL 494
           +MD  T   L
Sbjct: 453 KMDTFTLNTL 462


>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
 gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
          Length = 381

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 129/268 (48%), Gaps = 6/268 (2%)

Query: 180 HMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KK 237
            +++LY S+G  D   ++  E L++  +  V+++N  L AC +    +     F  L ++
Sbjct: 99  RLISLYGSSGMFDNARKVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGGLFRGLSEE 158

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS-LYTNMGYKD 296
            +I+PD +SY+T+   + +M   + A + L E+EK+  + + + +++LL+ LY N G  D
Sbjct: 159 LEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGLYAN-GRFD 217

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
              RIW++M     K +   Y   +  L      + A  + +E +S     D    N L+
Sbjct: 218 AGERIWQRMKEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEFDIFSYNALI 277

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             ++N   LE A+ +Y  +    IKP   T++ L    ++KG +    +  K A+ S  K
Sbjct: 278 RGFVNEGDLEEAKGWYGEIRKSDIKPDKLTFKTLIPFVVEKGDVAFAFDLCKDALSS--K 335

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLL 444
                 LI    + L ++  I+ A+ L+
Sbjct: 336 LAVKEALIQPVLDALAKESKINEAKELV 363



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 140 PDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197
           PD  S   ++ ++ +      A +L++++ + G     + +N +LN   +NG+ D   ++
Sbjct: 163 PDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGLYANGRFDAGERI 222

Query: 198 LQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256
            Q +K KN  PD  +YN  L   A +   + A K   E+K   I+ D  SY+ L   ++ 
Sbjct: 223 WQRMKEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVN 282

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293
               E+A     E+ K   + +++ + +L+      G
Sbjct: 283 EGDLEEAKGWYGEIRKSDIKPDKLTFKTLIPFVVEKG 319


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 7/320 (2%)

Query: 86  RYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--T 142
           R   A+E  E ME +  ++ LV+  Y   +D    +     A    E+L  K   P+  T
Sbjct: 233 RVAQAVEFVEEMEGMGLEVNLVA--YHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVT 290

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQEL 201
            + L+  Y ++ +  EAE ++++M E G +    + Y  M+N Y   G++D   ++  E+
Sbjct: 291 YTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM 350

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +      ++  YN  +         E  +K   E++   + PD  SY+TL   Y +    
Sbjct: 351 RDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSM 410

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA    + M +       + Y++LL  + ++   D+ LR+W  M+      N+   + +
Sbjct: 411 RKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTL 470

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K G+ E+A N++ E  +     +    N ++       ++  AE   +R+     
Sbjct: 471 LDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRC 530

Query: 381 KPCYTTWELLTWGYLKKGQM 400
            P   T+  L  GY K GQ+
Sbjct: 531 PPDSLTYRTLFDGYCKLGQL 550



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 125/293 (42%), Gaps = 3/293 (1%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL 216
           E + ++++M + G       YN +++ Y   G + K  +M + + +N  +   +TYN  L
Sbjct: 377 EVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLL 436

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
               S +  + A + +  + K  + P+ IS STL     K    E+A    KE   R   
Sbjct: 437 KGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLA 496

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           KN + ++++++    +G   E   +  +M  L    +   Y  +     KLG+   A ++
Sbjct: 497 KNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            ++ E +       + N  +  +    Q       ++ +  +G+ P   T+  L  G+ K
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +G + +    + + + +     P+  + +A  +   ++G +D A  +L  L N
Sbjct: 617 EGNLHEACNLYFEMVNNGMN--PNVFICSALMSCFYKEGKVDEANLVLQKLVN 667



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 13/317 (4%)

Query: 158 EAEALMEKMSEC--GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNL 214
            AE L   ++E    F    + ++ +L  +   GQL     +   + K    P + + N 
Sbjct: 129 HAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNR 188

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            L       D   A   + +++   + PD  + + +   Y +     +A   ++EME   
Sbjct: 189 LLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMG 248

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
              N VAY +++  Y  MG+ ++  RI + +       N   YT ++    K G  E+AE
Sbjct: 249 LEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAE 308

Query: 335 NIYDEWESISGTGDPRVPNI----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +  E +    TGD  V  +    ++  Y  R +++ A    N +   GI      +  +
Sbjct: 309 RVVKEMKE---TGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA-EHLLVTLRN 449
             G  K G+ME+V +  ++      +  PD        +    +G +  A E   + +RN
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMR--PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRN 423

Query: 450 AGHVSTEIYNSLLRTYA 466
               +T  YN+LL+ + 
Sbjct: 424 GLAATTLTYNTLLKGFC 440



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 135/359 (37%), Gaps = 64/359 (17%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + KI  ++ AE   + + +    PD+ +   L   Y +  +   A  LM KM   GF   
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              +N  +  +    Q  KV  +  E+  +  SP++VTY   +A    + +   A   + 
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK----------------EMEKRT--- 274
           E+    ++P+    S L S + K    ++A   L+                E++K +   
Sbjct: 629 EMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVV 688

Query: 275 ----------------------CRKNRVA--------------------YSSLLSLYTNM 292
                                 C+  R+A                    YSSL+      
Sbjct: 689 DTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAAS 748

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  DE   +   M+S     N   Y  +I  L K G+  +A N++++ +S   + +    
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808

Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           N L+  Y    +   A     ++V +GI+P   T+ +L +G   +G ME+ ++   + I
Sbjct: 809 NTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMI 867



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 1/197 (0%)

Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ-ELK 202
           + ++    ++ + A+A++L E +    FL     Y+ +++   ++G +D+   +    L 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763

Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
              +P+++TYN  +           A   F +L+   I P+ I+Y+TL   Y K     +
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
           A    ++M +   +   + YS L+      GY +E +++  +M+      N   Y  +I 
Sbjct: 824 AFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIH 883

Query: 323 SLVKLGEFEKAENIYDE 339
             +K G  E+   +YDE
Sbjct: 884 GYIKSGNMEEISKLYDE 900



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 133/335 (39%), Gaps = 54/335 (16%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQML 198
           T + +++   +  + AEAE L+++M E   L+CP   L Y  + + Y   GQL     ++
Sbjct: 501 TFNTVINGLCKIGRMAEAEELLDRMKE---LRCPPDSLTYRTLFDGYCKLGQLGTATHLM 557

Query: 199 QELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
            +++    +P V  +N ++                 E+    + P+ ++Y  L + + K 
Sbjct: 558 NKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKE 617

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
               +A     EM       N    S+L+S +   G  DE   + +K++++     D   
Sbjct: 618 GNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI-----DMIP 672

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
            C IS++    E +K  ++ D        G+P   N++                      
Sbjct: 673 GCSISTI----EIDKISHVVDTIAD----GNPHSANVM---------------------- 702

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437
                    W ++ +G  K G++      F+      ++++PD+   ++  +     G I
Sbjct: 703 ---------WNVIIFGLCKSGRIADAKSLFESL--RNKRFLPDNFTYSSLIHGCAASGSI 751

Query: 438 DGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           D A  L   + +AG     I YNSL+    K+GK+
Sbjct: 752 DEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKL 786



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           ++ A++ FE+L +K   PD  T S+L+H    +    EA +L + M   G     + YN 
Sbjct: 716 IADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNS 775

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
           ++     +G+L +   +  +L+ K  SP+ +TYN  +     +     A K   ++ +  
Sbjct: 776 LIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEG 835

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
           I P  I+YS L          E+A   L +M +     N + Y +L+  Y   G  +E+ 
Sbjct: 836 IQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEIS 895

Query: 300 RIWKKM 305
           +++ +M
Sbjct: 896 KLYDEM 901



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T ++L++   ++ K + A  L  K+   G     + YN +++ Y   G+  +  ++ Q++
Sbjct: 772 TYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM 831

Query: 202 -KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            ++   P V+TY++ +    +Q   E A K   ++ +  +DP++I+Y TL   YIK    
Sbjct: 832 VEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 891

Query: 261 EKAATTLKEMEKR 273
           E+ +    EM  R
Sbjct: 892 EEISKLYDEMHIR 904



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 41/277 (14%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L E+ ++ +   V+++L L A A      +A   F  + K    P   S + L +  ++ 
Sbjct: 137 LAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQS 196

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
             P  AA    +M       +    + +   Y   G   + +   ++M  +  ++N   Y
Sbjct: 197 GDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAY 256

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             V+     +G  E A  I +                                    L  
Sbjct: 257 HAVMDCYCGMGWTEDARRILES-----------------------------------LQR 281

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQG 435
           KG+ P   T+ LL  GY K G+ME+     K  K  G +   V D        N   ++G
Sbjct: 282 KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDI---VVDEVAYGMMINGYCQRG 338

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            +D A  +   +R+AG HV+  +YN+++    K G+M
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM 375


>gi|302804432|ref|XP_002983968.1| hypothetical protein SELMODRAFT_423071 [Selaginella moellendorffii]
 gi|300148320|gb|EFJ14980.1| hypothetical protein SELMODRAFT_423071 [Selaginella moellendorffii]
          Length = 598

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 175/419 (41%), Gaps = 35/419 (8%)

Query: 77  IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136
           I+R+L K ++YK AL+     E+     ++  DY  H+D+         AE  F  LPD 
Sbjct: 107 IIRKLTKRQKYKTALDKA--FEIDDRDYVLQVDYYAHVDMYL-------AEMAFNRLPDD 157

Query: 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 196
            +  +  + +L  YV+N+   +A  +M+K+ E G +        M  L+   G   ++P 
Sbjct: 158 KKTEEAYNYILAGYVRNRMLEKAVVVMDKIRELGLVSA-FSLEQMTLLFHYLGLERRIPA 216

Query: 197 MLQELKK---NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253
           ++ E +    +  P  +  +LW+       D    E+   EL+       W +Y  + S 
Sbjct: 217 LVVEARSLGLHFHPHFLNTHLWIK--RRHGDLSGMEEIVEELELMGRSNAW-TYIFIASA 273

Query: 254 YIKMELPEKAATTLKE----MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-- 307
           YI+   PEKA   L      +     +K R  Y+ +L LY  +   + + R+W  + S  
Sbjct: 274 YIQAGFPEKAHAALGAAEAGIRNGRFKKQRKVYNKILLLYGLLKDMEGIERVWGILNSRP 333

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL-- 365
           L A  N   +  +I +L   G   +AE I++E     G        I++A    +N L  
Sbjct: 334 LVAVHN---HLFMIEALGSAGNIGRAEEIFEELRKCRGVRKEYRQFIVMAGAYTKNGLMD 390

Query: 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-----WVPD 420
           +  E  Y+       +P    +     GY+K+ + +  +E +++    VR      W   
Sbjct: 391 KATEVLYDYPAKYKARPVPELYHYFIKGYIKRNEKDWAIEAYEEGQSLVRYRSTKLWYET 450

Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
              + + Y    E+GD+  A  +    +   H    ++  L +TY  A +    +++RM
Sbjct: 451 MLEVMSIY---AERGDVTSALAMFKHCKACKHRDIRMFTLLFKTYVVAKEPAHGLIKRM 506


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 148/334 (44%), Gaps = 6/334 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           TC+ L+    ++ +  EA  L+E M + GF    + Y  +++ + +NG LD+  ++  E 
Sbjct: 70  TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM 129

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K  S +VVTY+  +         + A      + +  I PD ++Y+ L     K    
Sbjct: 130 LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRA 189

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L  M ++    + V Y+ LLS     G   +  +I + M+    K +   Y  +
Sbjct: 190 THAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTL 249

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRV--PNILLAAYINRNQLEMAESFYNRLVTK 378
           +  L   G+ ++A  +++         +P V   N+L+       +L  A   + ++V K
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G      T+ +L  G LK G++++ +E +K+ +     +VP+    +   +   +   ++
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD--LGFVPNSFTYSILIDGFCKMRMLN 367

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            A+ L   +R  G + +   YN+L+ +  K G +
Sbjct: 368 IAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 401



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 8/342 (2%)

Query: 140 PD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQ 196
           PD  T + L+    ++ ++  A  L+  M E G     + YN +L+     G  +D    
Sbjct: 171 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 230

Query: 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL--KKTKIDPDWISYSTLTSLY 254
           +   ++K    DVVTYN  +     +   + A K F  +   +  ++P+  +++ L    
Sbjct: 231 LRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 290

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            K     KA    ++M K+    N V Y+ LL      G   E + +WK+++ L    N 
Sbjct: 291 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNS 350

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
             Y+ +I    K+     A+ ++ E  +          N L+A+      LE A+S +  
Sbjct: 351 FTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQE 410

Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434
           +     +P   ++  +  G LK G  + V E   K +    +  PD    +   N+L + 
Sbjct: 411 MGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR--PDALTFSTLINRLSKL 468

Query: 435 GDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAGKMPLII 475
           G++D A+  L  +  +G      +Y+SLL+  +  G    II
Sbjct: 469 GELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEII 510



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 179 NHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWL-AACASQNDKETAEKAFLELK 236
           N +L     NG + +   +++E+ +K+ SPD+V+YN  +   C ++  KE A    LE++
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKE-AVGLLLEME 60

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
                P+ ++ +TL     K    ++A   L+ M+K+    + V Y +L+S + N G  D
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
               ++ +M+      N   Y+C++  L +LG++++A  + +         D      L+
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
                  +   A    N +V KG +P   T+ +L  G  K+G +    +  +  I   +K
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTL---RNAGHVSTEIYNSLLRTYAKAGKM 471
              D          L ++G +D A  L  ++    N    +   +N L+    K G++
Sbjct: 241 --ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRL 296



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACAS 221
           M K   CG L   + YN +L   +  G++ +  ++  Q L     P+  TY++ +     
Sbjct: 306 MVKKGSCGNL---VTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
                 A+  F E++   ++P    Y+TL +   K    E+A +  +EM    C  + ++
Sbjct: 363 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 422

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           +++++      G    V  +  KM+ +  + +   ++ +I+ L KLGE ++A++  +   
Sbjct: 423 FNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 482

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379
           +   T D  V + LL    ++       +  +++  KG
Sbjct: 483 ASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 173/396 (43%), Gaps = 16/396 (4%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV-------QNKKSAEAEAL 162
           + V L  +   R L  A ++F ++      P+ C   L +Y        +  K   A  +
Sbjct: 166 HGVILSALCARRDLDKAVSYFNSV-----SPNKCEPTLFTYTVLVDGLCKAHKVERACDV 220

Query: 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACAS 221
            E+M   G+    + Y+ +++     G++D+  +++  +  +   P  V Y   +A    
Sbjct: 221 FEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCK 280

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
               + A K   E+++ ++ P   +YS + + YI M   EKA   ++EM  R C  + ++
Sbjct: 281 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTIS 340

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
           Y+  +    ++G ++E  ++++ M+    K +   Y  +I +  K G    A ++    +
Sbjct: 341 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 400

Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
             +   +  +  +++  ++  ++LE A   Y R++  GI P   T+  +     K  +M+
Sbjct: 401 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMD 460

Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNS 460
           + LE  ++      +  P     +   + L + G  + A  LL  + + G +     Y S
Sbjct: 461 EALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTS 520

Query: 461 LLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           L++T A AGK+   + ++E M K  +  D  T   L
Sbjct: 521 LIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTL 556



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 132/311 (42%), Gaps = 6/311 (1%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           +N +L  + +    + V  +L+E+K +  + +  T+ + L+A  ++ D + A   F  + 
Sbjct: 131 FNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVS 190

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
             K +P   +Y+ L     K    E+A    +EM ++  + + +AYSSL+   +  G  D
Sbjct: 191 PNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVD 250

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356
           E  ++   M++         YT +++ L K G  ++A     E             + ++
Sbjct: 251 EARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIV 310

Query: 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416
             YI   ++E A +    +  +   P   ++ +        G+ E+  + F+  +    K
Sbjct: 311 TGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCK 370

Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM--PL 473
             PD        +   ++G +  A H+L  +  A    +  IY  ++  + K+ ++   L
Sbjct: 371 --PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 428

Query: 474 IIVERMQKDNV 484
            + +R+ KD +
Sbjct: 429 ELYQRILKDGI 439



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y + ++ +  I     AE  FE + +K   PD  T   ++ ++ +    A A  ++  M 
Sbjct: 341 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 400

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKE 226
           +         Y  +++ ++ + +L++  ++ Q  LK    P  VTYN  + A       +
Sbjct: 401 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMD 460

Query: 227 TAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            A +   E+++ K  ++P  ++YS +     K+ + E+A   L EM       +   Y+S
Sbjct: 461 EALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTS 520

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
           L+      G     + + ++M+      +D  Y  ++  L +
Sbjct: 521 LIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCR 562


>gi|387219245|gb|AFJ69331.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 521

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 22/285 (7%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAE---KAFLELKKTKID--------PDWISYST 249
           L +   PDVVTY   + A A + D E AE   +  LE +  ++         P+ ++Y+T
Sbjct: 220 LARGLLPDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTT 279

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + Y      E +   L+ ME+     N + Y+ L++ YT  G       + ++M+S +
Sbjct: 280 LMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAY 339

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   YT ++ +    G    AE +    E+            L+  Y  R ++E A+
Sbjct: 340 VAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAK 399

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
               R+   G+ P    ++ L   Y+  G +    +  ++      +  PD  L    YN
Sbjct: 400 GVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRR---REAEAYPDFPLT---YN 453

Query: 430 KL----EEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG 469
            L     ++GD+ GAE +L  +R  G    E   ++LL  YA+AG
Sbjct: 454 TLMNGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAG 498



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 117/279 (41%), Gaps = 16/279 (5%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM--SECG---------FLKCPLPYNHM 181
           LPD +    T + L+H+Y     +  AEA++ +M   E G          L   + Y  +
Sbjct: 225 LPDVV----TYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTL 280

Query: 182 LNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +  Y + G ++    +L+ +++   +P+V+TY + + A   + D + AE     +    +
Sbjct: 281 MTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYV 340

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P+  +Y+TL   Y        A   L  ME        + +++L+++Y   G  +    
Sbjct: 341 APNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAKG 400

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +  +M +         +  ++++ V  G+   AE +    E+ +    P   N L+  Y 
Sbjct: 401 VLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYA 460

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           ++  +  AE    R+  KG+ P  TT   L   Y + G 
Sbjct: 461 DKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAGD 499



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG------ 293
           + PD  ++ T+  +Y     PE A   L  +  R    + V Y++L+  Y   G      
Sbjct: 189 LSPDLPTFHTVMKVYADERDPEGAEMVLGWLLARGLLPDVVTYTTLMHAYAGRGDTEGAE 248

Query: 294 --------------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                          ++EVLR+   +M+         YT ++++    G+ E +E + + 
Sbjct: 249 AVLRRMLEGEGGRVREEEVLRVLPNVMT---------YTTLMTAYAAGGDVEGSEAVLER 299

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            E      +     +L+ AY  R  ++ AE    R+++  + P   T+  L   Y   G 
Sbjct: 300 MEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYVAPNANTYTTLLHAYTVNGN 359

Query: 400 MEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
                E   +  A G +   +    L+T        +G+++ A+ +L  +  AG   T +
Sbjct: 360 AAGAEEVLARMEAAGVLPTALTFATLMTV----YAARGEVESAKGVLARMEAAGVGPTAM 415

Query: 458 -YNSLLRTYAKAGKM 471
            +++LL  Y  AG +
Sbjct: 416 AFDTLLNAYVVAGDV 430



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+  Y    +   A+ ++ +M   G     + ++ +LN Y+  G +    Q+L+  
Sbjct: 381 TFATLMTVYAARGEVESAKGVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRR 440

Query: 202 KKNTSPDV-VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +    PD  +TYN  +   A + D   AE     ++   + PD  + STL   Y +   P
Sbjct: 441 EAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAGDP 500

Query: 261 EKAATTL 267
             A   L
Sbjct: 501 LGAEAVL 507


>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic [Vitis vinifera]
 gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
          Length = 659

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 26/385 (6%)

Query: 43  RRLLSLVYAKRSAAITMRKWKEE--------GHTVHKYELNRIVRELRKLKRYKHALEVC 94
           +R  S+ Y  R +AI   +   +        G  +   +LN I+R   KL R++   ++ 
Sbjct: 65  KRCHSVGYKARQSAILEVQQSSDLGSALARLGDMLKVQDLNVILRHFGKLCRWQDLSQLF 124

Query: 95  EWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQ 152
           +WM+    I   S  Y+ ++  + K      A   + ++ D+        C+++L   ++
Sbjct: 125 DWMQKHEKITFSS--YSTYIKFMGKSLNPIKALEIYNSIQDESVRNNVSVCNSVLSCLIR 182

Query: 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLN--LYISNGQLDKVPQMLQELKKNTSP-DV 209
           N K   +  L  +M + G     + Y+ +L   + + +G   K  +++QE++++  P D 
Sbjct: 183 NGKFENSLKLFHQMKQDGLRPDAVTYSTLLAGCMKVKHG-YSKALELVQEMERSRLPMDS 241

Query: 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 269
           V Y   LA CAS N  + AE  F ++K     P+   YS+L + Y      +KA   +++
Sbjct: 242 VIYGTLLAVCASNNRCKEAENYFNQMKDEGHLPNVFHYSSLLNAYSADGDYKKADMLVQD 301

Query: 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329
           M+      N+V  ++LL +Y   G  ++   +  ++  L    ++  Y  ++  L K   
Sbjct: 302 MKSAGLVPNKVILTTLLKVYVRGGLFEKSRELLAELEDLGYAEDEMPYCLLMDGLAKSRR 361

Query: 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389
             +A++I++E +      D    +I+++A+     L+ A+      + +  +  Y  ++L
Sbjct: 362 ILEAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLKEAKQ-----LARDFEATYDKYDL 416

Query: 390 -----LTWGYLKKGQMEKVLECFKK 409
                +   Y + G+ME V++  +K
Sbjct: 417 VMLNTMLCAYCRAGEMESVMQMMRK 441



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 205
           L+    ++++  EA+++ E+M +         Y+ M++ +  +G L +  Q+ ++ +   
Sbjct: 352 LMDGLAKSRRILEAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLKEAKQLARDFEATY 411

Query: 206 SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
              D+V  N  L A     + E+  +   ++ +  I PDW ++  L   + K +L   A 
Sbjct: 412 DKYDLVMLNTMLCAYCRAGEMESVMQMMRKMDELAISPDWNTFHILIKYFCKEKLYLLAY 471

Query: 265 TTLKEMEKRTCRKNRVAYSSLLS 287
            T+++M  +  +      SSL+S
Sbjct: 472 RTMEDMHNKGHQPEEELCSSLIS 494


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 1/181 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           TC  ++  Y +     EA   + KM E G    P+ +N ++  Y+     D V + L  +
Sbjct: 258 TCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLM 317

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           ++    PDVVTY+  + A +S    +  E+ F ++ K +I+PD  +YS L   Y++   P
Sbjct: 318 EEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQP 377

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +KA   L  M K   + N V +++++S +   G  D  LR+++KM  +   +N   Y  +
Sbjct: 378 DKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETL 437

Query: 321 I 321
           I
Sbjct: 438 I 438



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 119/268 (44%), Gaps = 4/268 (1%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +  N+   V++    ++    +     A   F  L +    P  I+Y+TL +   +++  
Sbjct: 35  MGSNSCQTVISRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRF 94

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
               + L ++E+   + + + ++++++ +++ G   E ++I++KM     K   + +  +
Sbjct: 95  NSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTL 154

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDP--RVPNILLAAYINRNQLEMAESFYNRLVTK 378
           I     +G   +A  +  E     G   P  R  NIL+ A+  +N+LE A +  +++V  
Sbjct: 155 IKGFGIVGRPHEAMKLL-EMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNS 213

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438
           G++P   T+  L   + + G+ +       K      K  P+ R          ++G++ 
Sbjct: 214 GMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMT 273

Query: 439 GAEHLLVTLRNAG-HVSTEIYNSLLRTY 465
            A   L  ++  G H +  ++NSL++ Y
Sbjct: 274 EALRFLYKMKELGVHPNPVVFNSLIKGY 301



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 23/346 (6%)

Query: 59  MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
            RK KE G        N +++    + R   A+++ E M    ++K     Y + +    
Sbjct: 136 FRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWC 195

Query: 119 KIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSE-------- 168
               L  A N    + +    PD  T + L  ++ QN ++  AE L+ KM +        
Sbjct: 196 TKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPN 255

Query: 169 ---CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQND 224
              CG +         +  Y   G + +  + L ++K+    P+ V +N  +       D
Sbjct: 256 ERTCGII---------IRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITD 306

Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284
            +  E+A   +++  I PD ++YST+ + +    L +       +M K     +  AYS 
Sbjct: 307 TDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSI 366

Query: 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344
           L   Y   G  D+   +   M     + N   +T +IS     G+ + A  +Y++   + 
Sbjct: 367 LAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMG 426

Query: 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
              + +    L+  Y    Q   AE     +   G+ P  +T EL+
Sbjct: 427 TPLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEMSTIELV 472



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/256 (17%), Positives = 111/256 (43%), Gaps = 3/256 (1%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM---L 198
           T + L+ ++    +  EA  +M KM   G     + YN +   +  NG+ D   ++   +
Sbjct: 186 TYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKM 245

Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258
           Q+      P+  T  + +     + +   A +   ++K+  + P+ + +++L   Y+ + 
Sbjct: 246 QQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDIT 305

Query: 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
             +     L  ME+   + + V YS++++ +++ G  D    I+  M+    + +   Y+
Sbjct: 306 DTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYS 365

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +    V+ G+ +KAE + +         +  +   +++ +    +++ A   Y ++   
Sbjct: 366 ILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEM 425

Query: 379 GIKPCYTTWELLTWGY 394
           G      T+E L WGY
Sbjct: 426 GTPLNLKTYETLIWGY 441


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 167/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSAKNSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    Y+ +  + +  G+     
Sbjct: 76  LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 CRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L    +  +A +I  E  E      D  +   L++       L+ A +   
Sbjct: 256 ITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI--TAAYNKL 431
            ++   +      + +L   Y K G+ +K ++   K I       P   L   ++AYN L
Sbjct: 316 AMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIILRPQSTLHMESSAYNPL 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEG 417


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 9/305 (2%)

Query: 185 YISNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 243
           ++ +G++DK   +  E+ ++   P ++  N  +       + + AE    ++  + I PD
Sbjct: 220 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
             +YS +     K +  +KA   L++M +   R N + Y+SL+  Y+  G  +E +R++K
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
           +M S             I +L K G   +A+ I+D         D    + +L  Y    
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 399

Query: 364 QLEMAE--SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
              +A+  + +N ++TKGI P    + +L   Y + G M+K +  F+      +  +PD 
Sbjct: 400 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDM--QNKGMIPDT 457

Query: 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG---KMPLIIVE 477
                  + L   G +D A H    + + G   +E +Y  L++     G   K   +I E
Sbjct: 458 VTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISE 517

Query: 478 RMQKD 482
            M KD
Sbjct: 518 MMNKD 522



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 138/333 (41%), Gaps = 49/333 (14%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + K++ +  AE+  + + D    PD  T S ++    ++K   +AE ++E+M E G    
Sbjct: 255 LCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPN 314

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-------------------------------- 202
            + YN +++ Y  +G  ++  ++ +++                                 
Sbjct: 315 SITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFD 374

Query: 203 ----KNTSPDVVTYNLWLAACASQNDKETAE-KAFLELKKTK-IDPDWISYSTLTSLYIK 256
               K   PD+++Y+  L   A+  D   A+      L  TK I P+   ++ L + Y +
Sbjct: 375 SMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYAR 434

Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
             + +KA    ++M+ +    + V +++++S    +G  D+ L  +  M+ +    ++A 
Sbjct: 435 CGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV 494

Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI-LLAAYINR----NQLEMAESF 371
           Y C+I      GE  KA+ +  E  +     D   P +   ++ IN      ++   +  
Sbjct: 495 YGCLIQGCCNHGELVKAKELISEMMN----KDIPPPGVKYFSSIINNLCKEGRVAEGKDI 550

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404
            + +V  G +P   T+  L  GY   G ME+  
Sbjct: 551 MDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAF 583



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/336 (17%), Positives = 147/336 (43%), Gaps = 11/336 (3%)

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL- 201
           C++++    + K+  +AE++++KM + G       Y+ +++    +  +DK  ++L+++ 
Sbjct: 248 CNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMV 307

Query: 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
           +  T P+ +TYN  +   +       + + F ++    + P   + ++      K     
Sbjct: 308 EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTN 367

Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLY---TNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318
           +A      M  +  + + ++YS++L  Y   T+    D V  I+  M++     N   + 
Sbjct: 368 EAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD-VHNIFNLMLTKGIAPNKHVFN 426

Query: 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378
            +I++  + G  +KA  I+++ ++     D      ++++     +L+ A   +N +V  
Sbjct: 427 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 486

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKLEEQGD 436
           G+ P    +  L  G    G++ K  E   + +    K +P    +  ++  N L ++G 
Sbjct: 487 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMM---NKDIPPPGVKYFSSIINNLCKEGR 543

Query: 437 IDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
           +   + ++  +   G     + +NSL+  Y   G M
Sbjct: 544 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 579



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/377 (19%), Positives = 154/377 (40%), Gaps = 17/377 (4%)

Query: 129 FFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            FE++ +K   PDT +   ++ S  +  +  +A      M + G       Y  ++    
Sbjct: 444 IFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCC 503

Query: 187 SNGQLDKVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK-KTKIDPDW 244
           ++G+L K  +++ E+  K+  P  V Y   +     +  +    K  +++  +T   P+ 
Sbjct: 504 NHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNV 563

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
           +++++L   Y  +   E+A   L  M       N   Y +L+  Y   G  D+ L +++ 
Sbjct: 564 VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 623

Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
           M+    K     Y+ ++  L +      A+ ++ E      T       ++L      N 
Sbjct: 624 MLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNC 683

Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424
            + A     +L    +K    T+ ++     K G+ ++  E F     S    VP+ +  
Sbjct: 684 TDEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAI--STYGLVPNIQTY 741

Query: 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-TEIYNSLLRT------YAKAGKMPLIIVE 477
           +     L ++   + A++L +++  +GH S + + N ++R        AKA     II E
Sbjct: 742 SMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGE 801

Query: 478 RMQKDNVQMDAETQKVL 494
               +N+ ++A T  +L
Sbjct: 802 ----NNLTLEASTISLL 814



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 116/259 (44%), Gaps = 1/259 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
           T ++L+  Y       EA AL++ M+  G       Y  +++ Y  NG++D    + ++ 
Sbjct: 565 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 624

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L K   P  V Y++ L           A+K F E+ ++       +Y  +     +    
Sbjct: 625 LHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCT 684

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   L+++     + + + ++ ++S    +G + E   ++  + +     N   Y+ +
Sbjct: 685 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 744

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I++L+K   +E+A+N++   E      D R+ N ++   +N+ ++  A ++ + +    +
Sbjct: 745 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 804

Query: 381 KPCYTTWELLTWGYLKKGQ 399
               +T  LL   + ++G+
Sbjct: 805 TLEASTISLLASLFSREGK 823



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 114/294 (38%), Gaps = 6/294 (2%)

Query: 126 AENFFENLPDKMRGPD--TCSALLHSYVQNKKS--AEAEALMEKMSECGFLKCPLPYNHM 181
           A+  F+++  K   PD  + S +LH Y     S  A+   +   M   G       +N +
Sbjct: 369 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNIL 428

Query: 182 LNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +N Y   G +DK   + ++++ K   PD VT+   +++       + A   F  +    +
Sbjct: 429 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGV 488

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY-SSLLSLYTNMGYKDEVL 299
            P    Y  L           KA   + EM  +      V Y SS+++     G   E  
Sbjct: 489 PPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGK 548

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            I   M+    + N   +  ++     +G  E+A  + D   SI    +  +   L+  Y
Sbjct: 549 DIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 608

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
               +++ A + +  ++ KG+KP    + ++  G  +  +     + F + I S
Sbjct: 609 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIES 662


>gi|422294672|gb|EKU21972.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 535

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 22/285 (7%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAE---KAFLELKKTKID--------PDWISYST 249
           L +   PDVVTY   + A A + D E AE   +  LE +  ++         P+ ++Y+T
Sbjct: 234 LARGLLPDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTT 293

Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
           L + Y      E +   L+ ME+     N + Y+ L++ YT  G       + ++M+S +
Sbjct: 294 LMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAY 353

Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
              N   YT ++ +    G    AE +    E+            L+  Y  R ++E A+
Sbjct: 354 VAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAK 413

Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
               R+   G+ P    ++ L   Y+  G +    +  ++      +  PD  L    YN
Sbjct: 414 GVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRR---REAEAYPDFPLT---YN 467

Query: 430 KL----EEQGDIDGAEHLLVTLRNAGHVSTE-IYNSLLRTYAKAG 469
            L     ++GD+ GAE +L  +R  G    E   ++LL  YA+AG
Sbjct: 468 TLMNGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAG 512



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 117/279 (41%), Gaps = 16/279 (5%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM--SECG---------FLKCPLPYNHM 181
           LPD +    T + L+H+Y     +  AEA++ +M   E G          L   + Y  +
Sbjct: 239 LPDVV----TYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTL 294

Query: 182 LNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           +  Y + G ++    +L+ +++   +P+V+TY + + A   + D + AE     +    +
Sbjct: 295 MTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYV 354

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
            P+  +Y+TL   Y        A   L  ME        + +++L+++Y   G  +    
Sbjct: 355 APNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGEVESAKG 414

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
           +  +M +         +  ++++ V  G+   AE +    E+ +    P   N L+  Y 
Sbjct: 415 VLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYA 474

Query: 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
           ++  +  AE    R+  KG+ P  TT   L   Y + G 
Sbjct: 475 DKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAGD 513



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG------ 293
           + PD  ++ T+  +Y     PE A   L  +  R    + V Y++L+  Y   G      
Sbjct: 203 LSPDLPTFHTVMKVYADERDPEGAEMVLGWLLARGLLPDVVTYTTLMHAYAGRGDTEGAE 262

Query: 294 --------------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
                          ++EVLR+   +M+         YT ++++    G+ E +E + + 
Sbjct: 263 AVLRRMLEGEGGRVREEEVLRVLPNVMT---------YTTLMTAYAAGGDVEGSEAVLER 313

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            E      +     +L+ AY  R  ++ AE    R+++  + P   T+  L   Y   G 
Sbjct: 314 MEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYVAPNANTYTTLLHAYTVNGN 373

Query: 400 MEKVLECFKK--AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
                E   +  A G +   +    L+T        +G+++ A+ +L  +  AG   T +
Sbjct: 374 AAGAEEVLARMEAAGVLPTALTFATLMTV----YAARGEVESAKGVLARMEAAGVGPTAM 429

Query: 458 -YNSLLRTYAKAGKM 471
            +++LL  Y  AG +
Sbjct: 430 AFDTLLNAYVVAGDV 444



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + L+  Y    +   A+ ++ +M   G     + ++ +LN Y+  G +    Q+L+  
Sbjct: 395 TFATLMTVYAARGEVESAKGVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRR 454

Query: 202 KKNTSPDV-VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +    PD  +TYN  +   A + D   AE     ++   + PD  + STL   Y +   P
Sbjct: 455 EAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARMRAKGVGPDETTLSTLLHAYAEAGDP 514

Query: 261 EKAATTL 267
             A   L
Sbjct: 515 LGAEAVL 521


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 147/332 (44%), Gaps = 5/332 (1%)

Query: 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAE 160
           I+   G Y + +D +S  R ++  E  FE +  K    D    S+++++Y +      A 
Sbjct: 209 IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRAS 268

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAAC 219
            + ++    G       Y  ++N +   GQ++    ++ +++ +    + + +N  +   
Sbjct: 269 EVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGY 328

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
             +N  + A +  + ++K  I+ D  +Y+TL     +    ++A   L+ M ++  R N 
Sbjct: 329 CRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNH 388

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V+Y++L+S++ N G   E  R++++M    A+ +   Y  ++   +K G   +AE   +E
Sbjct: 389 VSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNE 448

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
            E      D      L+  +    ++++A   +  +  +G KP    +  L  G  K+G+
Sbjct: 449 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 508

Query: 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
            E+  + +   +G      PD  L +A    L
Sbjct: 509 SEEAFQLYDNMLGD--GLTPDDALYSALVGSL 538



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 2/281 (0%)

Query: 134 PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193
           PD +  P + S ++  Y ++ + A A  L+++M   G     L YN +L+ Y      D+
Sbjct: 138 PDSVT-PLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDR 196

Query: 194 VPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 252
           V +ML+ ++ +   P V TY + +   ++  D    E  F E+K   +  D   YS++ +
Sbjct: 197 VAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVIN 256

Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
            Y +     +A+    E        N   Y +L++ +  +G  +    +   M      +
Sbjct: 257 AYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGI 316

Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 372
           N   +  +I    +    +KA  I    E +    D    N L       N+++ A++  
Sbjct: 317 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 376

Query: 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
             ++ KG++P + ++  L   +  +G M +    F++  G+
Sbjct: 377 RIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGN 417


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 177/424 (41%), Gaps = 8/424 (1%)

Query: 14  RVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKW--KEEGHTVHK 71
           R+     +++  L LA ++ G   R  L  R+L+      +       W  K+ G+  H 
Sbjct: 63  RILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYR-HS 121

Query: 72  YELNR-IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130
           YE+ + +++ L K++++     + E M  +    +    + V +   +  R +  A    
Sbjct: 122 YEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVL 181

Query: 131 ENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
           + +P     PD      LL +  +N    EA +L E M    F      +  +L  +   
Sbjct: 182 DEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM-RIRFTPTLKHFTSLLYGWCRE 240

Query: 189 GQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247
           G+L +   +L ++++    PD+V YN  L   A+      A     E+++ + +P+ +S+
Sbjct: 241 GKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSF 300

Query: 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307
           +TL       +  E+A     EM+   C  + V Y++L+S +   G   +   +   M+ 
Sbjct: 301 TTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQ 360

Query: 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 367
                N   Y  ++++  K  E E+   + +E   I  T D  + NI++       +++ 
Sbjct: 361 QGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKE 420

Query: 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427
               +N +   G+ P   T+ ++  G+L +  + +  E FK+ +G      P +  +   
Sbjct: 421 GVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKEL 480

Query: 428 YNKL 431
            N L
Sbjct: 481 LNSL 484



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 160/381 (41%), Gaps = 44/381 (11%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122
           +E    V  Y    ++R     +  K A+EV + M  +Y  +     +   LD + K   
Sbjct: 150 RENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMP-KYGCEPDEHVFGCLLDALCKNGS 208

Query: 123 LSSAENFFENLPDKMRGPDTC---SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           +  A + FE++  ++R   T    ++LL+ + +  K  EA+ ++ ++ E GF    + YN
Sbjct: 209 VKEAASLFEDM--RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYN 266

Query: 180 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
           ++L  Y + G++     +L+E++ K   P+V+++   + A  ++   E A + F E++  
Sbjct: 267 NLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSC 326

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
               D ++Y+TL S + K     K    L  M ++    N + Y  +++ +      +E 
Sbjct: 327 GCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEEC 386

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES---------------- 342
           + + ++M  +    +   Y  VI    KLGE ++   +++E E+                
Sbjct: 387 IELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHG 446

Query: 343 ----------------ISGTGDPRVPNI-----LLAAYINRNQLEMAESFYNRLVTKGIK 381
                           + G G    P       LL + +   +LEM++  ++ ++TKG  
Sbjct: 447 FLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCD 506

Query: 382 PCYTTWELLTWGYLKKGQMEK 402
                W +        G +++
Sbjct: 507 LNVYAWTIWIHALFSNGHVKE 527


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 167/402 (41%), Gaps = 16/402 (3%)

Query: 81  LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI---SKIRGLSSAENFFENLPDKM 137
           L   K  +HAL+   W+E      L   +   HL +I    +   L+ A     ++P K 
Sbjct: 19  LHSAKTSEHALQFFRWVERS---NLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG 75

Query: 138 R--GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 195
                D    ++ SY +     E+  + +KM E G  +    YN +  + +  G+     
Sbjct: 76  LEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRYMMAK 135

Query: 196 QMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254
           +   + L +   P   T+N+ +         ETA + F ++K  +I PD ++Y+T+ + Y
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
            +++  E+A     EM+ R      V Y++L+  Y ++   D+ LR+ ++M     K N 
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNA 255

Query: 315 AEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373
             Y+ ++  L    +  +A +I  E  +      D  +   L+++  N   L+ A     
Sbjct: 256 ITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLK 315

Query: 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH--RLITAAYNKL 431
            ++   +      + +L   + K GQ ++ ++   K I       P     L  +AYN +
Sbjct: 316 AMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPM 375

Query: 432 EE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469
            E     G    AE L+  L   G       N+L+R +++ G
Sbjct: 376 IEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEG 417



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 52/320 (16%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           + +A  FFE++  +   PD  T + +++ Y + KK  EAE    +M         + Y  
Sbjct: 166 VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTT 225

Query: 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240
           ++  Y+S  Q+D   ++++E                                  +K   I
Sbjct: 226 LIKGYVSVDQVDDALRLVEE----------------------------------MKGFGI 251

Query: 241 DPDWISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
            P+ I+YSTL       E   +A + LKE M+K     +   +  L+S   N G  D   
Sbjct: 252 KPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAA 311

Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--------ESISGTGDPRV 351
            + K M+ L        Y  +I +  K G++++A  + D+            +   +P  
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSA 371

Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
            N ++    N  Q   AE+   +L+  G++   T    L  G+ ++G  +   E  K  +
Sbjct: 372 YNPMIEYLCNNGQAAKAEALVRQLLKLGVQDP-TALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 412 GSVRKWVPDHRLITAAYNKL 431
              R+ V   +   +AYN L
Sbjct: 431 ---RRKVDSEK---SAYNSL 444


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 7/303 (2%)

Query: 174 CP---LPYNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAE 229
           CP   + Y+ ++N +   G LDK      E L K  SP+VVTYN  +AA       + A 
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
           +    + K+ + PD ++Y+++   +     P++A   LK+M       + V Y+SL+   
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYL 127

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G   E  +I+  M     K +   Y  ++      G   +   + D         + 
Sbjct: 128 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 187

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            V +IL+ AY  + ++E A   ++++  +G+ P   T+  +     K G++E  +  F++
Sbjct: 188 YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 247

Query: 410 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKA 468
            I    +  PD  +  +  + L      + AE L + + + G  +ST  +NS++ ++ K 
Sbjct: 248 MIDEGLR--PDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKE 305

Query: 469 GKM 471
           G++
Sbjct: 306 GRV 308



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 115/262 (43%), Gaps = 10/262 (3%)

Query: 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192
           +PD M    T ++++H +  + +  EA   ++KM   G     + YN +++    NG+  
Sbjct: 79  MPDCM----TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 134

Query: 193 KVPQMLQEL-KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +  ++   + K+   PD+ TY   L   A++            + +  I P+   +S L 
Sbjct: 135 EARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 194

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K E  E+A     +M ++    N V Y +++ +    G  ++ +  +++M+    +
Sbjct: 195 CAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLR 254

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  +I SL    ++EKAE ++ E             N ++ ++    ++  +   
Sbjct: 255 PDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKL 314

Query: 372 YNRLVTKGIKPCYTTWELLTWG 393
           ++ +V  G+KP     +++T G
Sbjct: 315 FDLMVRIGVKP-----DIITLG 331


>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
          Length = 394

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 139/300 (46%), Gaps = 16/300 (5%)

Query: 114 LDLISKIRGLSSAENFFEN--LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
           L L +K + L+ A+    +  L   +R P   + LL+ YV+     +A    + M++   
Sbjct: 18  LHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGDV 77

Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAE 229
                P+N M+  Y+ +G+  +  ++  +++K  +T+PD  TY+  L ACA        +
Sbjct: 78  F----PWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGK 133

Query: 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289
             + E+     + D I  + L ++++K    E A     +M    C +N V++++++S Y
Sbjct: 134 LIYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKM----CERNLVSWTAMVSGY 189

Query: 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349
              G+ DE LR++ +M     K N      V+ +  +L + ++ + I+            
Sbjct: 190 AQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGI 249

Query: 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409
            V N L+  Y     +  A+  +++++ + +     +W +   GY + G+ ++ +E F+K
Sbjct: 250 VVGNALIDMYAKCGSIGSAQKVFDKMLQRDV----VSWNVAIAGYAQNGRFDECMELFRK 305


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 136/307 (44%), Gaps = 28/307 (9%)

Query: 179 NHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
           N +L+  +    L +V ++  E L +   P VVTYN  + AC  Q D   A + + ++  
Sbjct: 142 NAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVA 201

Query: 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297
            +IDP+ ++Y+T+     + +    A     EM++   R N   Y++L+S +        
Sbjct: 202 RRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKH 261

Query: 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NIL 355
            L  +  ++      ND  +T +I  L +     +A+NI+ +         P VP  N L
Sbjct: 262 ALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVA--PTVPVYNSL 319

Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---KVLECFKKAIG 412
           +         + A +F+  ++ KG++P   T  ++  G    GQM+   + LE  +++  
Sbjct: 320 IHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQS-- 377

Query: 413 SVRKWVPDHRLITAAYNKLEEQ----GDIDGAEHLLVTLRNAGHVSTE----IYNSLLRT 464
                     L  AAYN L ++    G++D A   LVT      V  E     Y+SL+  
Sbjct: 378 -------GIALNAAAYNVLIDEYCKSGNLDEA---LVTCTRMSEVGVEPNVVTYSSLIDG 427

Query: 465 YAKAGKM 471
           ++K G+M
Sbjct: 428 HSKNGEM 434



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 6/258 (2%)

Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
           P++ TYN  +++   +++ + A   + +L K  + P+ + ++TL     +     +A   
Sbjct: 241 PNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNI 300

Query: 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC--VISSL 324
             +M +         Y+SL+      GY  E L  +++++     +   E+TC  V+  L
Sbjct: 301 FLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIR--KGLRPDEFTCSIVVRGL 358

Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
              G+ + A    +  +      +    N+L+  Y     L+ A     R+   G++P  
Sbjct: 359 CDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNV 418

Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
            T+  L  G+ K G+ME  +  + + +   +   P+    TA  +   + GD+D A  L 
Sbjct: 419 VTYSSLIDGHSKNGEMEIAMAIYTEMVA--KGVEPNVVTYTALIHGHAKNGDMDAAFWLQ 476

Query: 445 VTLRNAGHVSTEIYNSLL 462
             +   G  S  I  S+L
Sbjct: 477 KEMEEKGIYSNAITVSVL 494



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 139/351 (39%), Gaps = 22/351 (6%)

Query: 63  KEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI---KLVSGD--YAVHLDLI 117
           KE G   + Y  N ++    K    KHAL         YD+    LV  D  +   +D +
Sbjct: 235 KEAGMRPNLYTYNALMSSHFKRDNIKHALV------FYYDLLKCGLVPNDVIFTTLIDGL 288

Query: 118 SKIRGLSSAENFFENLPDKMRGPDTC--SALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175
            +   ++ A+N F ++P     P     ++L+H   ++  + EA A  +++   G     
Sbjct: 289 CQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDE 348

Query: 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234
              + ++      GQ+    + L+ ++++  + +   YN+ +       + + A      
Sbjct: 349 FTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTR 408

Query: 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
           + +  ++P+ ++YS+L   + K    E A     EM  +    N V Y++L+  +   G 
Sbjct: 409 MSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGD 468

Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPN 353
            D    + K+M       N    + ++  L +    + A     E+     +  +P + N
Sbjct: 469 MDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIAN 528

Query: 354 ------ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
                 ++   YI+  Q   A  F++ +   G+ P   T+ L+  G    G
Sbjct: 529 SVTYMTLIYGLYID-GQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLG 578


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 183/435 (42%), Gaps = 36/435 (8%)

Query: 55  AAITMRKWKEEGHTVHKYELNRIVREL------RKLKRYKHALEVCEWMELQ---YDIKL 105
           A   +RK  E G  ++ Y  N ++  L        LK YK  +   E M+     Y   +
Sbjct: 185 APFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMIS--EGMKPSMKTYSALM 242

Query: 106 VS----GDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161
           V+    GD    ++L+ +++ +    N +           T +  + +  + ++  +A  
Sbjct: 243 VALGRRGDTRKIMNLLEEMKSIGLRPNIY-----------TYTICIRALGRARRIDDAWG 291

Query: 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACA 220
           + ++M + G     + Y  +++   + G+LDK  ++  +++ ++ SPD VTY   +    
Sbjct: 292 IFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFG 351

Query: 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280
              D ET ++ + E++     PD ++Y+ L     K    ++A   L  M  +    N  
Sbjct: 352 KVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLH 411

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
            Y++++         DE L + + M SL  K     Y   I    K G+  KA    D +
Sbjct: 412 TYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKA---IDTF 468

Query: 341 ESISGTGD-PRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
           E++   G  P +   N  L       ++  AE  +N L   G+ P   T+ +L   Y K 
Sbjct: 469 ETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKA 528

Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457
           GQ++K  +   + I   +   PD  +I +  N L + G +D A  +   L+N     T +
Sbjct: 529 GQIDKATQLLSEMIS--KGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVV 586

Query: 458 -YNSLLRTYAKAGKM 471
            YN LL    K GK+
Sbjct: 587 TYNILLTGLGKEGKI 601



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 121/271 (44%), Gaps = 5/271 (1%)

Query: 207  PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266
            P + +YN  +      N  E A + F ++K     P+  +Y+ L   + K +   K    
Sbjct: 794  PTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDL 853

Query: 267  LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326
              EM  R C  N + ++ ++S        ++ L ++ ++MS         Y  +I  L+K
Sbjct: 854  YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLK 913

Query: 327  LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386
             G  E+A  I++E        +  + NIL+  +    +++ A   + ++V +GI+P   +
Sbjct: 914  AGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKS 973

Query: 387  WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446
            + +L       G++++ ++ F++    +    PD        N L +   +D A  L   
Sbjct: 974  YTILVECLCITGRIDEAVQYFEEL--KLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSE 1031

Query: 447  LRNAGHVSTEI--YNSLLRTYAKAGKMPLII 475
            ++N G +S ++  YN+L+     AGK+ + +
Sbjct: 1032 MKNRG-ISPDLYTYNALILHLGIAGKVDVAV 1061



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 1/248 (0%)

Query: 144  SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK- 202
            + L+   + +  + +A  L E M   G       YN +L+ +  + +++K+  +  E++ 
Sbjct: 800  NCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS 859

Query: 203  KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
            +   P+ +T+N+ ++A    N+   A   + EL      P   +Y  L    +K    E+
Sbjct: 860  RGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQ 919

Query: 263  AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
            A    +EM    C  N V Y+ L++ +   G  D    ++KKM+    + +   YT ++ 
Sbjct: 920  AMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVE 979

Query: 323  SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
             L   G  ++A   ++E +      D    N ++       +L+ A S ++ +  +GI P
Sbjct: 980  CLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISP 1039

Query: 383  CYTTWELL 390
               T+  L
Sbjct: 1040 DLYTYNAL 1047



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 38/336 (11%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHS-------------YVQNK 154
           Y + +  + + R +  A   F+ + D+  GPD  T + L+ +             YV+ +
Sbjct: 273 YTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR 332

Query: 155 KSAEAE------ALMEKMSECGFLK--------------CP--LPYNHMLNLYISNGQLD 192
            S+ +        LM+K  + G L+               P  + Y  ++     +G +D
Sbjct: 333 ASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392

Query: 193 KVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251
           +   ML  +  K   P++ TYN  +         + A +    ++   + P   SY    
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFI 452

Query: 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311
             Y K   P KA  T + M+KR    +  A ++ L      G   E   I+  +      
Sbjct: 453 DYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLS 512

Query: 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371
            +   Y  ++    K G+ +KA  +  E  S     D  + N L+       +++ A   
Sbjct: 513 PDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKM 572

Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407
           + RL    + P   T+ +L  G  K+G++ K LE F
Sbjct: 573 FGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELF 608



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 7/263 (2%)

Query: 236  KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            K   I P   SY+ L    +     EKA    ++M+      N   Y+ LL  +      
Sbjct: 788  KNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRI 847

Query: 296  DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            +++  ++ +M S   + N   +  +IS+LVK     KA ++Y E  S   +  P     L
Sbjct: 848  NKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPL 907

Query: 356  LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SV 414
            +   +   + E A   +  ++  G  P    + +L  G+ K G+++   E FKK +   +
Sbjct: 908  IDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI 967

Query: 415  RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM-- 471
            R   PD +  T     L   G ID A      L+  G    T  YN ++    K+ ++  
Sbjct: 968  R---PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDE 1024

Query: 472  PLIIVERMQKDNVQMDAETQKVL 494
             L +   M+   +  D  T   L
Sbjct: 1025 ALSLFSEMKNRGISPDLYTYNAL 1047



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 136/346 (39%), Gaps = 54/346 (15%)

Query: 69  VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
           +H Y  N ++  L K +R   ALE+ E ME    +K  +  Y + +D   K    + A +
Sbjct: 410 LHTY--NTMICGLLKARRLDEALELLENME-SLGVKPTAFSYVLFIDYYGKSGDPAKAID 466

Query: 129 FFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
            FE +  +   P    C+A L++  +  + +EAE +   + +CG                
Sbjct: 467 TFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGL--------------- 511

Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246
                              SPD VTYN+ +   +     + A +   E+     +PD + 
Sbjct: 512 -------------------SPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMI 552

Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
            ++L +   K    + A      ++        V Y+ LL   T +G + ++L    K +
Sbjct: 553 INSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILL---TGLGKEGKIL----KAL 605

Query: 307 SLFAKM-------NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
            LF  M       N   +  ++  L K    + A  ++     ++   D    N ++   
Sbjct: 606 ELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGL 665

Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
           I   +++ A  F++++  K + P Y T   L  G ++ G++E  ++
Sbjct: 666 IREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIK 710



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/258 (18%), Positives = 108/258 (41%), Gaps = 1/258 (0%)

Query: 142  TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE- 200
            T + ++ + V++    +A  L  ++    F   P  Y  +++  +  G+ ++  ++ +E 
Sbjct: 868  THNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927

Query: 201  LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            L     P+ V YN+ +       + + A + F ++ K  I PD  SY+ L          
Sbjct: 928  LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRI 987

Query: 261  EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            ++A    +E++      + V+Y+ +++        DE L ++ +M +     +   Y  +
Sbjct: 988  DEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNAL 1047

Query: 321  ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
            I  L   G+ + A  +Y+E + +         N L+  +      + A S + +++  G 
Sbjct: 1048 ILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGC 1107

Query: 381  KPCYTTWELLTWGYLKKG 398
             P   T+  L   Y + G
Sbjct: 1108 SPNTETFAQLPNKYPRAG 1125


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 184/467 (39%), Gaps = 36/467 (7%)

Query: 46  LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
           L +V    +A   +R   + G   +      ++  L K  R   AL++ E M L   +  
Sbjct: 218 LCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPD 277

Query: 106 VSGDYAVHLDLISKIRGLSSAENFFEN--LPDKM--RG--PD--TCSALLHSYVQNKKSA 157
           V     V       I GL       E   L D+M  RG  P+  T   L++   +  K  
Sbjct: 278 VDTFNDV-------IYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVD 330

Query: 158 EAEALMEKMSECGFLKCPLP----YNHMLNLYISNGQLDKVPQMLQE--LKKNTSPDVVT 211
           EA+ L+ K+        P P    +  ++N Y+ +G+LD+    L +  +K    PDV T
Sbjct: 331 EAQVLLNKV--------PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFT 382

Query: 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271
           +N  +     +    +A     ++      P+ I+Y+TL   + K    E+A   L EM 
Sbjct: 383 FNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMS 442

Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
            +    N + Y+ LL      G   + L +  +M     K +   +  +I  L K+   E
Sbjct: 443 AKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKE 502

Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391
            A  +Y +        +    N L+ A++    ++ A    N ++ +G      T+  L 
Sbjct: 503 DALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLI 562

Query: 392 WGYLKKGQMEKVLECFKKAIGSVRK-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450
             + K G  EK L  F +    VRK  VP +       N L   G +  A  LL  + + 
Sbjct: 563 KAFCKLGATEKALGLFDEM---VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHR 619

Query: 451 GHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVL 494
           G     + YNSL+    K G +     +  ++Q + +Q DA T   L
Sbjct: 620 GLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTL 666



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 117/261 (44%), Gaps = 1/261 (0%)

Query: 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           T + LL  + +  +  EA  ++ +MS  GF    + YN +L     NG++ K   ML E+
Sbjct: 417 TYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEM 476

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
             K   PD+ T+N  +      + KE A   + ++    +  + ++Y+TL   +++    
Sbjct: 477 SDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAI 536

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           ++A   + +M  R C  + + Y+ L+  +  +G  ++ L ++ +M+      ++     +
Sbjct: 537 QEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLL 596

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I+ L ++G+   A  +  +        D    N L+        +  A + +N+L  +GI
Sbjct: 597 INGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGI 656

Query: 381 KPCYTTWELLTWGYLKKGQME 401
           +P   T+  L   + + G  +
Sbjct: 657 QPDAITYNTLICWHCRAGMFD 677



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 130/303 (42%), Gaps = 19/303 (6%)

Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
           YN +L++ +S         +  E L K   P V T+ + + A    N+ + A     ++ 
Sbjct: 176 YNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
           K    P+ + Y TL     K +   +A   L+EM    C  +   ++ ++     +    
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN--- 353
           E  ++  +M+      ND  Y  +++ L ++G+ ++A+ + ++  +         PN   
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT---------PNDVH 346

Query: 354 --ILLAAYINRNQLEMAESF-YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
             IL+  Y+   +L+ A +F Y++++  G +P   T+  L  G  KKG M   ++     
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH-VSTEIYNSLLRTYAKAG 469
             S     P+    T   +   ++  ++ A ++L  +   G  ++   YN LLR   K G
Sbjct: 407 --SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464

Query: 470 KMP 472
           K+P
Sbjct: 465 KVP 467


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 12/327 (3%)

Query: 106 VSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAE 160
           V GD  ++ +LI   R L   S A + F  L      PD  +  A+++ + + K   EA 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAAC 219
           +L+ +M   G +     Y+ +L +Y+ N +  +   +  E+++     D+ T N+ +   
Sbjct: 61  SLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279
                 + A+K F  ++K  I+P+ +SY+TL  +Y   EL  +A    + M+++   +N 
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 180

Query: 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
           V Y+S++ +Y      ++   + ++M S   + N   Y+ +IS   K+G+ ++A  ++ +
Sbjct: 181 VTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQK 240

Query: 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399
             S     D  +   ++ AY     +  A+   + L      P  T   +L       G+
Sbjct: 241 LRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA----GR 296

Query: 400 MEKVLECFKKAI--GSVRKWVPDHRLI 424
           +E+    F++AI  G V+      R+I
Sbjct: 297 IEEATYVFRQAIDAGEVKDITVFERMI 323



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 122/299 (40%), Gaps = 45/299 (15%)

Query: 85  KRYKHALEV-CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143
           K++  AL V  E  E++  + L + +  + +D+  ++     A+  F  +      P+  
Sbjct: 89  KKFLEALSVFSEMREIKCLLDLTTCN--IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 144 S--ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201
           S   LL  Y   +   EA  L   M      +  + YN M+ +Y    + +K   ++QE+
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 202 K-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           + +   P+ +TY+  ++        + A   F +L+ + I+ D I + T+   Y +  L 
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLV 266

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE---VLR------------IWKKM 305
             A   L E++    R + +   + + +    G  +E   V R            ++++M
Sbjct: 267 AHAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERM 322

Query: 306 MSL-------------FAKMNDAEY-------TCVISSLVKLGEFEKAENIYDEWESIS 344
           + L             F KM    Y         V+++  KL EF+KA ++Y E + + 
Sbjct: 323 IHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 141/306 (46%), Gaps = 9/306 (2%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y   +D + K R ++ A N F  +  K   P+  T ++++H   +  +      LM +M 
Sbjct: 217 YNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMV 276

Query: 168 ECGFLKCPLPYNHMLNLYISNGQL----DKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
           +   +   + +  +++     G +    D V  M+Q   +   PDVVTY   +     ++
Sbjct: 277 DSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQ---RGVEPDVVTYTALMDGHCLRS 333

Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
           + + A+K F  + +    P+ ISYSTL + Y K++  +KA    +EM +R    N V Y+
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYN 393

Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
           +L+    ++G   + + ++ +M++     +   Y  ++  L K    ++A  +    E  
Sbjct: 394 TLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
           +   D +  NI++       +LE A   ++ L +KG+ P   T+ ++  G   +G + + 
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEA 513

Query: 404 LECFKK 409
            + F++
Sbjct: 514 TKLFRE 519



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/274 (18%), Positives = 109/274 (39%), Gaps = 7/274 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
            K    PD  T+   +     +     A   F ++      P+ ++Y TL     K+   
Sbjct: 136 FKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNS 195

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
             A   L+ M ++ C  N + Y++++         +E L I+ +M++     N + Y  +
Sbjct: 196 RAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSI 255

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           I  L K  E++    + +E        +  +   L+ A      + +A    + ++ +G+
Sbjct: 256 IHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGV 315

Query: 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAI--GSVRKWVPDHRLITAAYNKLEEQGDID 438
           +P   T+  L  G+  + +M++  + F   +  G     +    LI   Y K++    ID
Sbjct: 316 EPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLIN-GYCKIQR---ID 371

Query: 439 GAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM 471
            A +L   +     V   + YN+L+      G++
Sbjct: 372 KAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL 405



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 96/234 (41%), Gaps = 3/234 (1%)

Query: 110 YAVHLDLISKIRGLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMS 167
           Y+  ++   KI+ +  A   FE +  +   P+  T + L+H      +  +A AL  +M 
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMV 416

Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
             G +   + Y  +L+       LD+   ML+ ++  N +PD+ +YN+ +       + E
Sbjct: 417 ASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELE 476

Query: 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 286
            A   F  L    + PD  +Y+ + +      L  +A    +EM    C  +   Y+ + 
Sbjct: 477 AAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLIT 536

Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
             +         +++ ++M+      + +  T ++  L   G  +  + I  E+
Sbjct: 537 RGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEF 590



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 6/237 (2%)

Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           L     P VV +   L + A+     T      ++    I  D  + + + + +  +   
Sbjct: 66  LHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRV 125

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
           +   + L ++ K   + +   +++L+      G   E L ++ KM+    + N   Y  +
Sbjct: 126 DFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTL 185

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTK 378
           I  L K+G    A  +      +    +P V   N ++       Q+  A + ++ ++ K
Sbjct: 186 IHGLCKVGNSRAAIRLLRSM--VQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAK 243

Query: 379 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435
           GI P  +T+  +  G  K  + + V     + + S  K +P+  + T   + L ++G
Sbjct: 244 GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDS--KIMPNVVIFTTLVDALCKEG 298


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 7/320 (2%)

Query: 86  RYKHALEVCEWME-LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPD--T 142
           R   A+E  E ME +  ++ LV+  Y   +D    +     A    E+L  K   P+  T
Sbjct: 233 RVAQAVEFVEEMEGMGLEVNLVA--YHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVT 290

Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQEL 201
            + L+  Y ++ +  EAE ++++M E G +    + Y  M+N Y   G++D   ++  E+
Sbjct: 291 YTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM 350

Query: 202 KK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
           +      ++  YN  +         E  +K   E++   + PD  SY+TL   Y +    
Sbjct: 351 RDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSM 410

Query: 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320
            KA    + M +       + Y++LL  + ++   D+ LR+W  M+      N+   + +
Sbjct: 411 RKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTL 470

Query: 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380
           +  L K G+ E+A N++ E  +     +    N ++       ++  AE   +R+     
Sbjct: 471 LDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRC 530

Query: 381 KPCYTTWELLTWGYLKKGQM 400
            P   T+  L  GY K GQ+
Sbjct: 531 PPDSLTYRTLFDGYCKLGQL 550



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 125/293 (42%), Gaps = 3/293 (1%)

Query: 158 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWL 216
           E + ++++M + G       YN +++ Y   G + K  +M + + +N  +   +TYN  L
Sbjct: 377 EVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLL 436

Query: 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276
               S +  + A + +  + K  + P+ IS STL     K    E+A    KE   R   
Sbjct: 437 KGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLA 496

Query: 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336
           KN + ++++++    +G   E   +  +M  L    +   Y  +     KLG+   A ++
Sbjct: 497 KNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556

Query: 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
            ++ E +       + N  +  +    Q       ++ +  +G+ P   T+  L  G+ K
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616

Query: 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449
           +G + +    + + + +     P+  + +A  +   ++G +D A  +L  L N
Sbjct: 617 EGNLHEACNLYFEMVNNGMN--PNVFICSALMSCFYKEGKVDEANLVLQKLVN 667



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 13/317 (4%)

Query: 158 EAEALMEKMSEC--GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNL 214
            AE L   ++E    F    + ++ +L  +   GQL     +   + K    P + + N 
Sbjct: 129 HAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNR 188

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            L       D   A   + +++   + PD  + + +   Y +     +A   ++EME   
Sbjct: 189 LLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMG 248

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
              N VAY +++  Y  MG+ ++  RI + +       N   YT ++    K G  E+AE
Sbjct: 249 LEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAE 308

Query: 335 NIYDEWESISGTGDPRVPNI----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390
            +  E +    TGD  V  +    ++  Y  R +++ A    N +   GI      +  +
Sbjct: 309 RVVKEMKE---TGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA-EHLLVTLRN 449
             G  K G+ME+V +  ++      +  PD        +    +G +  A E   + +RN
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMR--PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRN 423

Query: 450 AGHVSTEIYNSLLRTYA 466
               +T  YN+LL+ + 
Sbjct: 424 GLAATTLTYNTLLKGFC 440



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 133/367 (36%), Gaps = 80/367 (21%)

Query: 117 ISKIRGLSSAENFFENLPDKMRGPDTCS--ALLHSYVQNKKSAEAEALMEKMSECGFLKC 174
           + KI  ++ AE   + + +    PD+ +   L   Y +  +   A  LM KM   GF   
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 175 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 233
              +N  +  +    Q  KV  +  E+  +  SP++VTY   +A    + +   A   + 
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK----------------EMEKRT--- 274
           E+    ++P+    S L S + K    ++A   L+                E++K +   
Sbjct: 629 EMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVV 688

Query: 275 ----------------------CRKNRVA--------------------YSSLLSLYTNM 292
                                 C+  R+A                    YSSL+      
Sbjct: 689 DTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAAS 748

Query: 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 352
           G  DE   +   M+S     N   Y  +I  L K G+  +A N++++ +S   + +    
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808

Query: 353 NILLAAY----------------INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396
           N L+  Y                +    +E A    ++++   + P Y T+  L  GY+K
Sbjct: 809 NTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIK 868

Query: 397 KGQMEKV 403
            G ME++
Sbjct: 869 SGNMEEI 875



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 123 LSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 180
           ++ A++ FE+L +K   PD  T S+L+H    +    EA +L + M   G     + YN 
Sbjct: 716 IADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNS 775

Query: 181 MLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETA--------EKA 231
           ++     +G+L +   +  +L+ K  SP+ +TYN  +     +     A        E+ 
Sbjct: 776 LIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEG 835

Query: 232 FLE--------LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
           ++E        + +  +DP++I+Y TL   YIK    E+ +    EM  R
Sbjct: 836 YMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIR 885



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 41/277 (14%)

Query: 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
           L E+ ++ +   V+++L L A A      +A   F  + K    P   S + L +  ++ 
Sbjct: 137 LAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQS 196

Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
             P  AA    +M       +    + +   Y   G   + +   ++M  +  ++N   Y
Sbjct: 197 GDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAY 256

Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377
             V+     +G  E A  I +                                    L  
Sbjct: 257 HAVMDCYCGMGWTEDARRILES-----------------------------------LQR 281

Query: 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFK--KAIGSVRKWVPDHRLITAAYNKLEEQG 435
           KG+ P   T+ LL  GY K G+ME+     K  K  G +   V D        N   ++G
Sbjct: 282 KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDI---VVDEVAYGMMINGYCQRG 338

Query: 436 DIDGAEHLLVTLRNAG-HVSTEIYNSLLRTYAKAGKM 471
            +D A  +   +R+AG HV+  +YN+++    K G+M
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM 375



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 99/262 (37%), Gaps = 45/262 (17%)

Query: 123 LSSAENFFENLPDKMRGPDT--CSALLHSYVQNKKSAEAEALMEKMSECGFLK-C----- 174
           L  A N +  + +    P+   CSAL+  + +  K  EA  +++K+     +  C     
Sbjct: 620 LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTI 679

Query: 175 ----------------PLPYNHMLNLYI----SNGQLDKVPQMLQELK-KNTSPDVVTYN 213
                           P   N M N+ I     +G++     + + L+ K   PD  TY+
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273
             +  CA+    + A      +    + P+ I+Y++L     K     +A     +++ +
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 274 TCRKNRVAYSSLLSLY----------------TNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
               N + Y++L+  Y                   GY +E +++  +M+      N   Y
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITY 859

Query: 318 TCVISSLVKLGEFEKAENIYDE 339
             +I   +K G  E+   +YDE
Sbjct: 860 CTLIHGYIKSGNMEEISKLYDE 881


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 157/360 (43%), Gaps = 23/360 (6%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           GL  A   +E +      PD  T  ++L+   ++ K +E + L+ +M + G     + Y 
Sbjct: 4   GLEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYT 63

Query: 180 HMLNLYISNGQLDKVPQMLQELK----KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235
            +L+     G   KV + L  L     +  + DV+   + +         + AE  F  L
Sbjct: 64  ILLDALFKAG---KVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNL 120

Query: 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
            +  + P++I+YS L     K+     A + L EME++ C  N + YSSL++ Y   G  
Sbjct: 121 YQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLL 180

Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
            +  ++ +KM+   A  N   Y  ++    K G  + A ++Y + +     G  +    +
Sbjct: 181 HDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQ----GGLKDNVFI 236

Query: 356 LAAYINR----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
           L A++N      ++E AE    ++ + G+KP    +  L  G+LK G++   L   ++  
Sbjct: 237 LDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEM- 295

Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI--YNSLLRTYAKAG 469
            + +  V D        N L + G  D  E +   +R  G +S ++  YN++L    K G
Sbjct: 296 -TSKNVVFDIVTFNVLINCLFKLGKSD-TESIYSAMREMG-LSPDLATYNTMLNGNFKKG 352



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 149/364 (40%), Gaps = 55/364 (15%)

Query: 74  LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133
           L+   + LRK+        +C +  L  D    +G   + LDL SK++     +N F   
Sbjct: 180 LHDAFKVLRKMVHKNAMPNICTYAIL-LDGSFKAGWQDIALDLYSKMKQGGLKDNVF--- 235

Query: 134 PDKMRGPDTCSALLHSYVQNKKSA----EAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189
                       +L ++V N K +    EAE L+ KM+  G     + Y ++++ ++ +G
Sbjct: 236 ------------ILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSG 283

Query: 190 QLDKVPQMLQEL-KKNT----------------------------------SPDVVTYNL 214
           ++     + QE+  KN                                   SPD+ TYN 
Sbjct: 284 KVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNT 343

Query: 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
            L     + +  +A + + E+K  K+ P+ I+ + + +   +    E A   LKEM    
Sbjct: 344 MLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMG 403

Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
                  Y  LL++ +     D +L+  + ++++  K++   Y  +IS+L KLG   KA 
Sbjct: 404 LYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKAT 463

Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
            +  + E      D    N L+  Y   + L+ A   Y+ ++++ + P   T+ LL  G 
Sbjct: 464 AVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGL 523

Query: 395 LKKG 398
            K G
Sbjct: 524 SKAG 527



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 131/329 (39%), Gaps = 43/329 (13%)

Query: 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281
           QN  E A   + E+  + I PD +++ ++     K     +    L+EM K     N V+
Sbjct: 2   QNGLEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVS 61

Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE------- 334
           Y+ LL      G   E L     M+      +    T +I  L K G+ ++AE       
Sbjct: 62  YTILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLY 121

Query: 335 --NIYDEWESISGTGDPR---------------------VPNI-----LLAAYINRNQLE 366
             N+   + + S   D R                     VPN+     L+  Y+ +  L 
Sbjct: 122 QLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH 181

Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426
            A     ++V K   P   T+ +L  G  K G  +  L+ + K     +  + D+  I  
Sbjct: 182 DAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKM---KQGGLKDNVFILD 238

Query: 427 AY-NKLEEQGDIDGAEHLLVTLRNAGHVSTEI-YNSLLRTYAKAGKM--PLIIVERMQKD 482
           A+ N ++  G ++ AE L+  + + G     + Y +L+  + K+GK+   L + + M   
Sbjct: 239 AFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSK 298

Query: 483 NVQMDAETQKVL-KITSEMPVSEVSSIFS 510
           NV  D  T  VL     ++  S+  SI+S
Sbjct: 299 NVVFDIVTFNVLINCLFKLGKSDTESIYS 327



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 38/311 (12%)

Query: 122 GLSSAENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
           G S  E+ +  + +    PD  T + +L+   +      A  L  +M     +   +  N
Sbjct: 318 GKSDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCN 377

Query: 180 HMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
            M+N     G+++    +L+E+      P   TY + L   +     +T  +    L   
Sbjct: 378 IMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNM 437

Query: 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298
           ++  D   Y+ L S   K+ +  KA   LK+ME+R    +   Y++L+  Y    +    
Sbjct: 438 QLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRA 497

Query: 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE------------WES---- 342
              +  M+S     +   Y  ++  L K G   +A+++  E            +E+    
Sbjct: 498 FMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCG 557

Query: 343 ------------------ISG-TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383
                             I G    PR  N+L+  +    +++ A+   N + TKG+ P 
Sbjct: 558 HCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPT 617

Query: 384 YTTWELLTWGY 394
            TT+++L  G+
Sbjct: 618 CTTYDILICGW 628


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,563,799,228
Number of Sequences: 23463169
Number of extensions: 303078043
Number of successful extensions: 946965
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4426
Number of HSP's successfully gapped in prelim test: 4775
Number of HSP's that attempted gapping in prelim test: 868914
Number of HSP's gapped (non-prelim): 37751
length of query: 510
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 363
effective length of database: 8,910,109,524
effective search space: 3234369757212
effective search space used: 3234369757212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)