BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010458
         (510 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
          Length = 452

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 10/169 (5%)

Query: 245 ISYSTLTSLYIKMELPEKAATTLKEME----KRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
           I Y  L ++Y K + PE+ A  LK+ME    + T    RV   + +     +G  DE  +
Sbjct: 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE--K 234

Query: 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360
             + ++   A    A +  +   L    E    E +    ++      PR   +L   Y 
Sbjct: 235 TAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294

Query: 361 NRN----QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
                    + AE+ + + V + +   Y   ++   GYL K   +K L+
Sbjct: 295 EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALD 343


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340
           A+ +L + Y   G  DE +  ++K + L  +  +A Y  + ++  K G++++A   Y + 
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKA 61

Query: 341 ESISGTGDPRVPNI---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397
             +    DPR       L  AY  +   + A  +Y + +    +     W  L   Y K+
Sbjct: 62  LEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-EAWYNLGNAYYKQ 116

Query: 398 GQMEKVLECFKKAI 411
           G  ++ +E ++KA+
Sbjct: 117 GDYDEAIEYYQKAL 130


>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
           Human Ranbp2
          Length = 130

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 21/119 (17%)

Query: 61  KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVC--EWMELQYDIKLVSGDYAVHLDLIS 118
           +WKE G    K   N +  +LR L R +  L+VC   W+    ++K +SG     + L S
Sbjct: 26  QWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLAS 85

Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
                S  +   E L  K + P+                 AE   +K  EC  L   +P
Sbjct: 86  ---DFSDGDAKLEQLAAKFKTPEL----------------AEEFKQKFEECQRLLLDIP 125


>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
           Terminal Aaa-Atpase Domain
          Length = 274

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228
            +LN+Y+  G+ ++  + + +  KN++P V+ ++   A C  ++D+ET 
Sbjct: 79  ELLNMYV--GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125


>pdb|2KLO|A Chain A, Structure Of The Cdt1 C-Terminal Domain
          Length = 138

 Score = 29.3 bits (64), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454
           L  G+MEK L    + +     W+  HR+ T  Y KL++  D+ G     +T R A HV 
Sbjct: 83  LSPGEMEKHLVLLAELLPD---WLSLHRIRTDTYVKLDKAVDLAG-----LTARLAHHVH 134

Query: 455 TE 456
            E
Sbjct: 135 AE 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,614,968
Number of Sequences: 62578
Number of extensions: 596786
Number of successful extensions: 1706
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 23
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)