Query 010458
Match_columns 510
No_of_seqs 684 out of 3322
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 00:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.1E-65 1.1E-69 519.1 55.5 450 40-496 372-855 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-64 3.2E-69 515.7 52.2 466 36-508 402-902 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-61 4.1E-66 502.3 44.4 455 37-509 149-612 (857)
4 PLN03081 pentatricopeptide (PP 100.0 5.8E-59 1.3E-63 472.5 45.9 420 53-484 104-559 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.9E-58 4.2E-63 468.7 48.4 416 67-499 83-505 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4.6E-59 1E-63 484.4 44.1 443 33-499 215-668 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-29 1.2E-33 265.0 53.0 430 53-497 448-880 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-29 1.1E-33 265.2 52.0 414 53-480 482-898 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 3.9E-23 8.5E-28 188.6 33.5 370 104-488 113-489 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 7.9E-23 1.7E-27 186.7 32.8 386 68-467 113-502 (966)
11 PRK11447 cellulose synthase su 99.9 3.3E-21 7.2E-26 206.2 49.9 405 78-496 276-759 (1157)
12 PRK11447 cellulose synthase su 99.9 6.7E-21 1.5E-25 203.9 51.3 418 53-482 164-700 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.7E-25 189.6 48.1 398 73-482 129-571 (615)
14 PRK11788 tetratricopeptide rep 99.9 2.9E-22 6.3E-27 191.5 34.0 297 186-489 46-354 (389)
15 PRK11788 tetratricopeptide rep 99.9 3.1E-22 6.6E-27 191.4 33.3 294 115-413 43-347 (389)
16 PRK15174 Vi polysaccharide exp 99.9 1.4E-20 3E-25 188.6 43.2 367 74-449 45-419 (656)
17 PRK10049 pgaA outer membrane p 99.9 3.6E-20 7.7E-25 189.6 43.8 414 68-494 12-466 (765)
18 PRK15174 Vi polysaccharide exp 99.9 5.1E-20 1.1E-24 184.5 43.9 376 81-466 15-398 (656)
19 PRK10049 pgaA outer membrane p 99.9 2.2E-19 4.7E-24 183.9 42.5 411 34-457 11-463 (765)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.7E-23 174.2 48.2 393 53-456 144-577 (615)
21 PRK14574 hmsH outer membrane p 99.9 1.3E-17 2.8E-22 167.7 47.5 440 33-481 29-512 (822)
22 PRK09782 bacteriophage N4 rece 99.9 3.8E-17 8.3E-22 167.7 49.7 229 243-482 476-706 (987)
23 PRK09782 bacteriophage N4 rece 99.9 3E-17 6.4E-22 168.5 47.6 413 53-489 61-677 (987)
24 KOG2002 TPR-containing nuclear 99.8 1.8E-16 3.8E-21 153.0 37.6 406 70-482 269-745 (1018)
25 KOG2003 TPR repeat-containing 99.8 1.7E-17 3.8E-22 146.7 26.9 417 53-479 218-719 (840)
26 KOG4422 Uncharacterized conser 99.8 1.9E-15 4.1E-20 133.1 38.9 437 43-498 120-606 (625)
27 PRK14574 hmsH outer membrane p 99.8 2.5E-15 5.5E-20 151.3 45.5 397 51-456 83-519 (822)
28 KOG2002 TPR-containing nuclear 99.8 6.1E-16 1.3E-20 149.4 37.3 446 42-497 205-725 (1018)
29 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.5E-18 121.1 36.7 376 67-465 203-606 (625)
30 KOG0495 HAT repeat protein [RN 99.7 1.6E-12 3.4E-17 120.8 44.2 334 141-481 517-879 (913)
31 KOG2076 RNA polymerase III tra 99.7 1.3E-13 2.9E-18 132.6 38.0 369 75-448 143-553 (895)
32 KOG2003 TPR repeat-containing 99.7 5.1E-15 1.1E-19 131.3 25.4 417 73-499 203-705 (840)
33 KOG1915 Cell cycle control pro 99.7 1.7E-12 3.8E-17 116.1 41.2 416 53-482 90-536 (677)
34 PRK10747 putative protoheme IX 99.7 4.4E-14 9.5E-19 133.8 33.6 282 120-411 97-388 (398)
35 KOG2076 RNA polymerase III tra 99.7 1.4E-12 3E-17 125.7 42.4 426 53-482 156-695 (895)
36 KOG0547 Translocase of outer m 99.7 2.8E-13 6E-18 121.6 34.3 393 75-480 119-564 (606)
37 TIGR00540 hemY_coli hemY prote 99.7 4.6E-14 9.9E-19 134.5 31.6 287 118-410 95-396 (409)
38 PF13429 TPR_15: Tetratricopep 99.7 2E-16 4.4E-21 143.2 14.1 259 147-411 15-275 (280)
39 PRK10747 putative protoheme IX 99.7 2.4E-13 5.2E-18 128.8 33.7 285 153-450 97-390 (398)
40 KOG1126 DNA-binding cell divis 99.7 1.4E-14 3E-19 135.0 24.2 287 86-383 334-625 (638)
41 KOG0495 HAT repeat protein [RN 99.7 1.2E-11 2.6E-16 115.1 42.4 412 43-470 383-802 (913)
42 PF13429 TPR_15: Tetratricopep 99.7 2.5E-16 5.5E-21 142.6 12.0 256 114-375 15-274 (280)
43 KOG1155 Anaphase-promoting com 99.7 4.6E-12 1E-16 113.2 37.8 293 148-449 235-535 (559)
44 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.6E-19 134.5 23.1 286 53-348 336-625 (638)
45 TIGR00540 hemY_coli hemY prote 99.7 4.9E-13 1.1E-17 127.4 33.2 292 151-449 95-398 (409)
46 COG2956 Predicted N-acetylgluc 99.6 1.4E-12 3E-17 111.2 28.9 221 190-412 50-277 (389)
47 COG2956 Predicted N-acetylgluc 99.6 1.5E-12 3.3E-17 111.0 26.7 288 153-449 48-346 (389)
48 COG3071 HemY Uncharacterized e 99.6 7.2E-12 1.6E-16 110.3 31.7 284 120-411 97-388 (400)
49 KOG1915 Cell cycle control pro 99.6 1.6E-10 3.4E-15 103.9 39.5 403 69-483 71-501 (677)
50 COG3071 HemY Uncharacterized e 99.6 1.2E-11 2.6E-16 108.8 31.0 284 153-448 97-388 (400)
51 KOG1173 Anaphase-promoting com 99.6 5.3E-11 1.2E-15 109.2 35.8 432 53-498 33-532 (611)
52 KOG1155 Anaphase-promoting com 99.6 1.8E-10 3.8E-15 103.3 36.7 375 105-499 162-551 (559)
53 KOG1129 TPR repeat-containing 99.5 1E-12 2.2E-17 112.1 19.0 256 219-482 189-458 (478)
54 PRK12370 invasion protein regu 99.5 1.7E-11 3.7E-16 121.4 28.7 248 122-378 276-535 (553)
55 KOG1173 Anaphase-promoting com 99.5 7E-11 1.5E-15 108.5 29.7 284 140-432 244-533 (611)
56 KOG1156 N-terminal acetyltrans 99.5 2E-09 4.3E-14 100.7 36.7 388 83-484 19-470 (700)
57 PRK12370 invasion protein regu 99.5 7.1E-11 1.5E-15 117.1 29.2 249 224-482 276-535 (553)
58 TIGR02521 type_IV_pilW type IV 99.5 2.7E-11 5.8E-16 107.0 23.7 197 71-270 31-229 (234)
59 KOG0547 Translocase of outer m 99.5 9.6E-10 2.1E-14 99.4 32.7 381 53-451 132-567 (606)
60 KOG2047 mRNA splicing factor [ 99.5 9.3E-09 2E-13 96.1 39.8 432 53-499 155-666 (835)
61 KOG2376 Signal recognition par 99.5 1.9E-09 4.2E-14 99.7 34.9 424 40-478 14-516 (652)
62 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 106.2 18.6 234 212-453 226-461 (478)
63 TIGR02521 type_IV_pilW type IV 99.5 1.1E-10 2.4E-15 103.1 26.7 199 245-449 32-231 (234)
64 PF12569 NARP1: NMDA receptor- 99.4 1.4E-09 3.1E-14 104.2 33.4 293 77-377 10-333 (517)
65 KOG4318 Bicoid mRNA stability 99.4 4.5E-10 9.7E-15 108.4 27.7 253 57-329 11-286 (1088)
66 KOG1156 N-terminal acetyltrans 99.4 2.8E-08 6E-13 93.3 38.3 406 33-452 36-470 (700)
67 KOG3785 Uncharacterized conser 99.4 1.2E-08 2.5E-13 88.8 33.1 417 53-498 39-504 (557)
68 KOG2047 mRNA splicing factor [ 99.4 5.3E-08 1.1E-12 91.3 39.2 405 72-487 103-583 (835)
69 KOG4162 Predicted calmodulin-b 99.4 2.2E-08 4.8E-13 95.8 36.9 411 60-481 312-782 (799)
70 PF12569 NARP1: NMDA receptor- 99.4 1.8E-09 3.8E-14 103.6 29.9 280 53-341 21-332 (517)
71 KOG1174 Anaphase-promoting com 99.4 2.4E-08 5.1E-13 88.7 33.4 299 153-461 209-511 (564)
72 KOG0548 Molecular co-chaperone 99.3 1.1E-08 2.3E-13 94.1 31.4 405 53-478 19-485 (539)
73 KOG1174 Anaphase-promoting com 99.3 5.7E-09 1.2E-13 92.5 28.5 269 103-378 228-500 (564)
74 COG3063 PilF Tfp pilus assembl 99.3 3E-09 6.4E-14 87.1 23.7 198 73-273 37-236 (250)
75 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.4E-14 103.6 23.2 130 212-341 328-477 (508)
76 KOG3785 Uncharacterized conser 99.3 4.6E-08 1E-12 85.1 30.7 378 53-453 74-493 (557)
77 PRK11189 lipoprotein NlpI; Pro 99.3 2.1E-09 4.5E-14 97.6 24.2 94 74-169 67-161 (296)
78 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 102.7 23.2 240 209-448 199-477 (508)
79 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 78.4 6.4 49 242-290 1-49 (50)
80 COG3063 PilF Tfp pilus assembl 99.3 6.9E-09 1.5E-13 85.0 23.4 199 141-342 36-235 (250)
81 KOG4318 Bicoid mRNA stability 99.3 8.9E-10 1.9E-14 106.4 21.3 253 162-436 12-286 (1088)
82 cd05804 StaR_like StaR_like; a 99.3 3.7E-08 8E-13 93.0 32.5 62 389-450 269-336 (355)
83 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 77.8 6.3 50 207-256 1-50 (50)
84 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-08 3.1E-13 92.2 27.4 200 245-454 65-269 (296)
85 cd05804 StaR_like StaR_like; a 99.2 7.9E-08 1.7E-12 90.8 32.2 304 107-413 6-336 (355)
86 KOG0624 dsRNA-activated protei 99.2 2E-07 4.4E-12 80.9 29.0 314 73-413 40-370 (504)
87 PRK04841 transcriptional regul 99.2 5.6E-07 1.2E-11 96.2 38.9 268 185-452 462-762 (903)
88 KOG4162 Predicted calmodulin-b 99.1 2.3E-07 5E-12 89.0 30.5 389 53-453 340-786 (799)
89 KOG4340 Uncharacterized conser 99.1 2.5E-07 5.4E-12 78.8 26.9 297 68-374 7-335 (459)
90 KOG2376 Signal recognition par 99.1 4.8E-06 1E-10 77.9 36.5 161 281-447 341-517 (652)
91 KOG0624 dsRNA-activated protei 99.1 1.3E-06 2.8E-11 76.0 29.8 325 104-458 35-378 (504)
92 PRK04841 transcriptional regul 99.1 2E-06 4.3E-11 92.0 38.2 413 52-482 291-760 (903)
93 KOG0548 Molecular co-chaperone 99.1 9.8E-07 2.1E-11 81.5 29.5 400 78-498 9-469 (539)
94 PF04733 Coatomer_E: Coatomer 99.0 9.9E-09 2.1E-13 91.8 15.5 68 400-470 183-250 (290)
95 KOG1914 mRNA cleavage and poly 99.0 2.1E-05 4.6E-10 72.9 38.8 406 67-480 16-499 (656)
96 PF04733 Coatomer_E: Coatomer 99.0 2.3E-08 4.9E-13 89.5 16.9 26 247-272 134-159 (290)
97 KOG4340 Uncharacterized conser 99.0 8.5E-07 1.8E-11 75.6 23.9 297 104-411 7-337 (459)
98 KOG1125 TPR repeat-containing 99.0 9.3E-08 2E-12 88.8 19.0 253 113-371 291-564 (579)
99 KOG1127 TPR repeat-containing 99.0 3.6E-06 7.9E-11 83.3 30.4 380 87-478 474-909 (1238)
100 KOG0985 Vesicle coat protein c 98.9 1.9E-05 4.1E-10 78.4 34.3 139 209-371 1104-1242(1666)
101 PLN02789 farnesyltranstransfer 98.9 3.8E-06 8.3E-11 76.3 27.9 125 183-309 45-172 (320)
102 KOG3617 WD40 and TPR repeat-co 98.9 7.3E-06 1.6E-10 79.5 30.3 359 71-470 757-1186(1416)
103 KOG1914 mRNA cleavage and poly 98.9 6E-05 1.3E-09 70.0 35.9 388 104-497 17-481 (656)
104 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.8E-11 76.9 26.2 149 141-292 38-189 (320)
105 KOG1125 TPR repeat-containing 98.9 4E-07 8.7E-12 84.7 20.3 244 218-470 294-557 (579)
106 KOG1070 rRNA processing protei 98.9 4.2E-07 9.2E-12 92.6 22.0 222 243-470 1457-1686(1710)
107 KOG1070 rRNA processing protei 98.9 1.6E-06 3.6E-11 88.5 25.5 241 88-335 1442-1692(1710)
108 TIGR03302 OM_YfiO outer membra 98.9 7.8E-07 1.7E-11 78.4 20.8 191 241-451 30-233 (235)
109 KOG1128 Uncharacterized conser 98.9 3.4E-07 7.4E-12 87.4 19.0 238 104-359 395-633 (777)
110 PRK14720 transcript cleavage f 98.8 2.5E-06 5.3E-11 86.4 26.0 241 68-360 28-268 (906)
111 KOG1128 Uncharacterized conser 98.8 7.3E-07 1.6E-11 85.2 19.6 232 212-466 401-634 (777)
112 TIGR03302 OM_YfiO outer membra 98.8 7.2E-07 1.6E-11 78.6 18.3 185 68-273 30-232 (235)
113 KOG3617 WD40 and TPR repeat-co 98.8 0.00014 3.1E-09 71.0 33.6 273 38-339 802-1170(1416)
114 KOG3081 Vesicle coat complex C 98.7 8E-06 1.7E-10 68.8 21.7 150 320-481 114-270 (299)
115 COG5010 TadD Flp pilus assembl 98.7 6.5E-06 1.4E-10 69.4 20.8 158 179-339 70-227 (257)
116 KOG2053 Mitochondrial inherita 98.7 0.00039 8.4E-09 68.8 41.4 426 53-498 26-518 (932)
117 COG4783 Putative Zn-dependent 98.7 1.8E-05 4E-10 72.7 24.8 198 122-343 252-454 (484)
118 PRK15359 type III secretion sy 98.7 1.6E-06 3.5E-11 69.3 16.2 110 352-465 27-136 (144)
119 PRK10370 formate-dependent nit 98.7 3.5E-06 7.6E-11 71.2 18.7 119 188-308 52-173 (198)
120 COG5010 TadD Flp pilus assembl 98.7 2.8E-06 6E-11 71.6 17.5 157 144-303 70-226 (257)
121 KOG3616 Selective LIM binding 98.7 1.3E-05 2.7E-10 77.0 23.8 169 251-446 739-907 (1636)
122 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.1E-13 56.2 4.0 32 239-270 2-33 (34)
123 KOG3616 Selective LIM binding 98.7 3.3E-05 7.2E-10 74.2 25.6 194 215-444 738-931 (1636)
124 PRK10370 formate-dependent nit 98.7 7.5E-06 1.6E-10 69.2 19.6 121 328-453 53-176 (198)
125 KOG1127 TPR repeat-containing 98.6 6.3E-05 1.4E-09 74.9 27.7 354 121-481 472-878 (1238)
126 PRK14720 transcript cleavage f 98.6 1.1E-05 2.5E-10 81.7 23.2 223 206-467 28-269 (906)
127 PRK15179 Vi polysaccharide bio 98.6 1.3E-05 2.8E-10 80.5 23.5 132 104-236 83-215 (694)
128 KOG0985 Vesicle coat protein c 98.6 0.00086 1.9E-08 67.3 36.2 306 115-470 1056-1369(1666)
129 PRK15359 type III secretion sy 98.6 1.6E-06 3.4E-11 69.4 13.5 96 73-170 26-122 (144)
130 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 55.0 3.8 34 65-98 1-34 (34)
131 KOG3081 Vesicle coat complex C 98.5 4E-05 8.7E-10 64.8 20.2 151 114-272 115-270 (299)
132 PRK15179 Vi polysaccharide bio 98.5 3.2E-05 7E-10 77.7 23.3 160 139-308 85-245 (694)
133 KOG3060 Uncharacterized conser 98.5 8.7E-05 1.9E-09 62.3 21.7 195 255-457 23-227 (289)
134 KOG3060 Uncharacterized conser 98.5 3.9E-05 8.5E-10 64.3 19.5 164 110-275 55-222 (289)
135 COG4783 Putative Zn-dependent 98.5 4.3E-05 9.4E-10 70.3 20.5 114 119-234 318-433 (484)
136 TIGR02552 LcrH_SycD type III s 98.5 8.3E-06 1.8E-10 64.8 14.2 117 58-179 5-122 (135)
137 TIGR02552 LcrH_SycD type III s 98.4 1.4E-05 3.1E-10 63.4 15.0 98 208-307 16-113 (135)
138 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.2E-05 1.6E-09 57.8 14.0 109 351-459 4-114 (119)
139 PF09976 TPR_21: Tetratricopep 98.2 5.1E-05 1.1E-09 60.9 12.8 112 84-199 24-142 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.3E-05 1.4E-09 69.9 14.6 125 143-272 172-296 (395)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4.1E-09 57.6 15.0 118 326-447 23-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00016 3.5E-09 67.3 16.2 121 319-448 174-295 (395)
143 PRK10866 outer membrane biogen 98.1 0.0035 7.5E-08 55.0 23.4 180 249-448 37-239 (243)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.3E-05 1.4E-09 58.1 11.3 97 73-169 4-105 (119)
145 TIGR00756 PPR pentatricopeptid 98.1 9.6E-06 2.1E-10 46.7 4.7 34 142-175 2-35 (35)
146 KOG0550 Molecular chaperone (D 98.1 0.002 4.3E-08 58.3 20.9 155 252-413 177-350 (486)
147 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.0097 2.1E-07 54.7 31.3 131 316-452 399-533 (660)
148 TIGR00756 PPR pentatricopeptid 98.0 1.5E-05 3.2E-10 46.0 4.7 33 351-383 2-34 (35)
149 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 45.5 4.4 33 141-173 2-34 (34)
150 cd00189 TPR Tetratricopeptide 98.0 0.00022 4.7E-09 52.2 11.7 95 353-451 4-98 (100)
151 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 45.0 4.5 31 246-276 3-33 (34)
152 KOG2053 Mitochondrial inherita 97.9 0.03 6.5E-07 56.1 43.4 197 37-240 39-257 (932)
153 PLN03088 SGT1, suppressor of 97.9 0.00043 9.3E-09 64.7 15.3 103 357-463 10-112 (356)
154 cd00189 TPR Tetratricopeptide 97.9 0.00019 4.1E-09 52.5 10.6 57 248-305 38-94 (100)
155 PRK02603 photosystem I assembl 97.9 0.00073 1.6E-08 56.1 14.8 112 353-470 39-166 (172)
156 PF10037 MRP-S27: Mitochondria 97.9 0.00031 6.8E-09 65.7 13.5 118 174-291 65-185 (429)
157 COG3898 Uncharacterized membra 97.9 0.019 4.1E-07 51.9 27.2 318 41-378 57-392 (531)
158 PF12895 Apc3: Anaphase-promot 97.9 4.4E-05 9.6E-10 54.6 6.0 80 362-446 2-83 (84)
159 KOG0553 TPR repeat-containing 97.9 0.00044 9.4E-09 59.9 12.8 167 323-499 90-270 (304)
160 PF10037 MRP-S27: Mitochondria 97.8 0.00037 8E-09 65.2 13.1 125 238-362 60-186 (429)
161 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.025 5.4E-07 52.1 30.4 418 67-499 38-546 (660)
162 PRK10866 outer membrane biogen 97.8 0.0041 8.9E-08 54.5 18.9 182 106-305 31-238 (243)
163 KOG1130 Predicted G-alpha GTPa 97.8 0.00032 7E-09 63.1 11.6 284 78-375 24-341 (639)
164 PLN03088 SGT1, suppressor of 97.8 0.00039 8.5E-09 64.9 13.0 100 78-181 9-109 (356)
165 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.7E-09 49.8 6.9 63 82-146 2-64 (68)
166 PF08579 RPM2: Mitochondrial r 97.8 0.00047 1E-08 50.3 9.7 77 320-396 31-116 (120)
167 PRK15363 pathogenicity island 97.8 0.00075 1.6E-08 53.3 11.7 91 113-204 41-132 (157)
168 PRK15363 pathogenicity island 97.8 0.0012 2.5E-08 52.2 12.8 89 251-341 42-130 (157)
169 PF08579 RPM2: Mitochondrial r 97.8 0.00053 1.2E-08 50.1 9.9 75 216-290 32-115 (120)
170 PF14938 SNAP: Soluble NSF att 97.7 0.0037 8E-08 56.6 17.9 58 284-341 119-182 (282)
171 PF14938 SNAP: Soluble NSF att 97.7 0.0057 1.2E-07 55.3 19.1 66 387-452 158-227 (282)
172 KOG2041 WD40 repeat protein [G 97.7 0.023 5E-07 55.2 23.2 367 36-449 688-1085(1189)
173 KOG0550 Molecular chaperone (D 97.7 0.026 5.6E-07 51.4 22.2 272 53-342 43-349 (486)
174 PRK02603 photosystem I assembl 97.7 0.0015 3.2E-08 54.2 14.0 88 70-157 34-123 (172)
175 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.5E-09 52.4 6.3 81 84-165 2-83 (84)
176 PF13525 YfiO: Outer membrane 97.7 0.013 2.8E-07 50.0 19.9 172 250-440 11-197 (203)
177 PF05843 Suf: Suppressor of fo 97.7 0.00097 2.1E-08 60.0 13.5 131 141-273 2-136 (280)
178 KOG2280 Vacuolar assembly/sort 97.7 0.062 1.3E-06 52.9 30.7 341 64-446 425-795 (829)
179 COG4700 Uncharacterized protei 97.7 0.004 8.7E-08 50.0 14.9 185 38-230 24-214 (251)
180 PF05843 Suf: Suppressor of fo 97.7 0.0019 4.2E-08 58.1 14.9 126 282-411 4-134 (280)
181 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.4E-08 53.2 13.3 61 247-307 38-100 (168)
182 KOG0553 TPR repeat-containing 97.6 0.00045 9.7E-09 59.9 9.3 108 358-470 90-198 (304)
183 CHL00033 ycf3 photosystem I as 97.6 0.0032 7E-08 52.0 14.3 62 351-412 37-100 (168)
184 COG4700 Uncharacterized protei 97.6 0.016 3.4E-07 46.7 17.0 125 312-442 87-214 (251)
185 PF12688 TPR_5: Tetratrico pep 97.6 0.0057 1.2E-07 46.5 14.2 109 355-466 7-117 (120)
186 PF01535 PPR: PPR repeat; Int 97.6 0.0001 2.2E-09 40.9 3.7 30 142-171 2-31 (31)
187 PF13432 TPR_16: Tetratricopep 97.6 0.0004 8.7E-09 46.7 7.3 60 391-453 4-63 (65)
188 PRK10153 DNA-binding transcrip 97.6 0.0061 1.3E-07 59.7 18.0 68 383-454 419-486 (517)
189 PRK10153 DNA-binding transcrip 97.6 0.0051 1.1E-07 60.2 17.4 61 280-342 421-481 (517)
190 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.3E-09 40.8 3.7 29 351-379 2-30 (31)
191 KOG1130 Predicted G-alpha GTPa 97.6 0.0018 3.9E-08 58.5 12.5 133 316-448 197-342 (639)
192 PF03704 BTAD: Bacterial trans 97.5 0.0026 5.5E-08 51.2 12.4 72 423-494 64-142 (146)
193 PF13432 TPR_16: Tetratricopep 97.5 0.00021 4.5E-09 48.1 5.1 54 115-168 5-59 (65)
194 PF14559 TPR_19: Tetratricopep 97.5 0.00032 6.9E-09 47.7 6.1 55 396-453 3-57 (68)
195 KOG2796 Uncharacterized conser 97.5 0.0092 2E-07 50.8 15.3 130 178-308 180-315 (366)
196 COG4235 Cytochrome c biogenesi 97.5 0.0048 1E-07 54.0 14.1 103 104-207 153-259 (287)
197 PRK10803 tol-pal system protei 97.5 0.0039 8.5E-08 55.1 13.9 103 352-454 146-250 (263)
198 PRK10803 tol-pal system protei 97.5 0.0019 4.1E-08 57.1 11.8 95 74-170 146-247 (263)
199 PF13525 YfiO: Outer membrane 97.5 0.036 7.8E-07 47.3 19.2 178 280-470 6-193 (203)
200 PF13414 TPR_11: TPR repeat; P 97.5 0.0006 1.3E-08 46.5 6.8 65 384-451 3-68 (69)
201 PF13414 TPR_11: TPR repeat; P 97.5 0.00036 7.7E-09 47.7 5.6 64 71-136 3-67 (69)
202 PF06239 ECSIT: Evolutionarily 97.4 0.0012 2.6E-08 54.7 9.0 87 207-293 45-152 (228)
203 COG4235 Cytochrome c biogenesi 97.4 0.016 3.4E-07 50.9 15.8 101 206-308 153-256 (287)
204 PF12688 TPR_5: Tetratrico pep 97.4 0.0076 1.6E-07 45.9 12.2 53 150-202 11-65 (120)
205 KOG2041 WD40 repeat protein [G 97.3 0.19 4.1E-06 49.3 27.3 356 68-469 689-1071(1189)
206 PF04840 Vps16_C: Vps16, C-ter 97.3 0.14 2.9E-06 46.9 28.9 111 315-447 178-288 (319)
207 PF06239 ECSIT: Evolutionarily 97.3 0.0031 6.7E-08 52.3 9.6 116 127-260 34-154 (228)
208 PF07079 DUF1347: Protein of u 97.2 0.17 3.7E-06 47.0 35.6 48 431-479 472-521 (549)
209 PF13281 DUF4071: Domain of un 97.2 0.085 1.9E-06 48.7 19.0 98 210-307 142-254 (374)
210 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.1E-06 45.4 26.9 110 281-410 179-288 (319)
211 COG3898 Uncharacterized membra 97.0 0.25 5.3E-06 45.1 29.9 296 141-450 83-392 (531)
212 PF13371 TPR_9: Tetratricopept 97.0 0.003 6.4E-08 43.6 6.5 59 79-139 3-61 (73)
213 PF13281 DUF4071: Domain of un 97.0 0.19 4.1E-06 46.5 19.3 36 419-454 303-338 (374)
214 COG4105 ComL DNA uptake lipopr 96.9 0.22 4.7E-06 43.0 20.4 184 251-453 41-236 (254)
215 PF13371 TPR_9: Tetratricopept 96.9 0.0074 1.6E-07 41.6 8.0 59 393-454 4-62 (73)
216 COG3118 Thioredoxin domain-con 96.9 0.093 2E-06 46.0 15.9 162 57-223 120-286 (304)
217 KOG2796 Uncharacterized conser 96.9 0.23 4.9E-06 42.7 22.0 27 142-168 71-97 (366)
218 COG4649 Uncharacterized protei 96.8 0.12 2.7E-06 41.2 14.3 134 70-204 58-196 (221)
219 KOG2280 Vacuolar assembly/sort 96.8 0.64 1.4E-05 46.2 33.1 102 349-470 684-785 (829)
220 PF07079 DUF1347: Protein of u 96.8 0.48 1E-05 44.2 32.4 402 80-494 15-501 (549)
221 PF13424 TPR_12: Tetratricopep 96.7 0.0074 1.6E-07 42.2 6.6 65 385-449 6-74 (78)
222 PRK15331 chaperone protein Sic 96.7 0.14 2.9E-06 41.0 13.9 87 324-412 47-133 (165)
223 KOG1538 Uncharacterized conser 96.6 0.3 6.5E-06 47.5 18.2 36 162-200 622-657 (1081)
224 PRK15331 chaperone protein Sic 96.6 0.12 2.6E-06 41.3 13.1 89 252-342 45-133 (165)
225 COG1729 Uncharacterized protei 96.6 0.028 6.1E-07 48.7 10.2 96 73-169 144-244 (262)
226 PF13428 TPR_14: Tetratricopep 96.5 0.0094 2E-07 36.1 5.3 42 422-463 2-43 (44)
227 PF13424 TPR_12: Tetratricopep 96.5 0.011 2.3E-07 41.4 6.2 60 246-305 7-72 (78)
228 PF03704 BTAD: Bacterial trans 96.5 0.02 4.4E-07 45.9 8.6 58 213-271 66-123 (146)
229 PF12921 ATP13: Mitochondrial 96.5 0.14 3E-06 39.5 12.6 100 349-470 2-103 (126)
230 KOG0543 FKBP-type peptidyl-pro 96.4 0.1 2.3E-06 47.7 13.2 94 385-481 258-354 (397)
231 PF13512 TPR_18: Tetratricopep 96.4 0.062 1.3E-06 41.8 10.2 80 108-187 11-94 (142)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.065 1.4E-06 50.2 12.1 64 70-135 74-140 (453)
233 COG1729 Uncharacterized protei 96.3 0.13 2.9E-06 44.6 12.9 103 351-454 144-248 (262)
234 KOG1258 mRNA processing protei 96.3 1.1 2.5E-05 43.4 32.0 185 278-470 296-490 (577)
235 PF04053 Coatomer_WDAD: Coatom 96.3 0.08 1.7E-06 50.8 12.7 133 71-234 295-427 (443)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.039 8.5E-07 51.6 9.9 67 103-169 71-141 (453)
237 PF08631 SPO22: Meiosis protei 96.2 0.94 2E-05 40.9 22.9 120 82-204 4-150 (278)
238 KOG1538 Uncharacterized conser 96.1 0.43 9.3E-06 46.5 16.0 168 90-272 619-801 (1081)
239 COG4105 ComL DNA uptake lipopr 96.1 0.84 1.8E-05 39.5 20.5 72 115-186 42-117 (254)
240 PF10300 DUF3808: Protein of u 96.0 0.5 1.1E-05 46.1 16.8 162 282-448 191-374 (468)
241 PF12921 ATP13: Mitochondrial 96.0 0.11 2.3E-06 40.1 9.8 98 313-431 1-98 (126)
242 PRK11906 transcriptional regul 95.9 0.61 1.3E-05 44.1 15.8 111 364-479 319-433 (458)
243 PF09205 DUF1955: Domain of un 95.9 0.56 1.2E-05 35.7 13.1 58 182-239 93-150 (161)
244 PF04053 Coatomer_WDAD: Coatom 95.8 0.14 3E-06 49.2 11.7 156 82-269 272-427 (443)
245 COG3629 DnrI DNA-binding trans 95.7 0.12 2.6E-06 45.7 10.1 77 421-497 153-236 (280)
246 KOG1585 Protein required for f 95.7 0.56 1.2E-05 40.0 13.4 54 317-371 193-249 (308)
247 COG4785 NlpI Lipoprotein NlpI, 95.7 0.97 2.1E-05 37.8 14.4 28 281-308 239-266 (297)
248 KOG3941 Intermediate in Toll s 95.6 0.11 2.4E-06 45.0 9.2 88 208-295 66-174 (406)
249 KOG0543 FKBP-type peptidyl-pro 95.6 0.17 3.8E-06 46.4 10.9 96 177-273 259-355 (397)
250 smart00299 CLH Clathrin heavy 95.6 0.87 1.9E-05 36.0 16.0 125 318-466 11-136 (140)
251 PF04184 ST7: ST7 protein; In 95.6 1.7 3.6E-05 41.4 17.3 60 352-411 262-322 (539)
252 PF09205 DUF1955: Domain of un 95.5 0.77 1.7E-05 35.0 16.1 136 291-453 14-152 (161)
253 PF10300 DUF3808: Protein of u 95.5 1.1 2.3E-05 43.9 16.7 25 354-378 310-334 (468)
254 PF13512 TPR_18: Tetratricopep 95.5 0.48 1E-05 37.0 11.4 80 72-151 11-93 (142)
255 KOG2610 Uncharacterized conser 95.4 0.47 1E-05 42.4 12.5 152 152-305 115-273 (491)
256 KOG4555 TPR repeat-containing 95.4 0.22 4.7E-06 37.7 8.8 90 79-170 51-145 (175)
257 COG0457 NrfG FOG: TPR repeat [ 95.3 1.7 3.7E-05 37.6 29.0 204 244-452 59-267 (291)
258 KOG1941 Acetylcholine receptor 95.3 1.8 4E-05 39.3 15.7 228 219-448 16-273 (518)
259 smart00299 CLH Clathrin heavy 95.3 1.1 2.4E-05 35.4 15.5 82 250-339 13-94 (140)
260 KOG2610 Uncharacterized conser 95.3 0.86 1.9E-05 40.8 13.6 156 115-271 111-274 (491)
261 PF13428 TPR_14: Tetratricopep 95.3 0.05 1.1E-06 32.9 4.5 39 73-113 3-41 (44)
262 COG3118 Thioredoxin domain-con 95.2 2 4.4E-05 38.0 17.7 143 323-470 143-287 (304)
263 PRK11906 transcriptional regul 95.2 1.7 3.8E-05 41.2 16.2 143 53-200 275-432 (458)
264 KOG4555 TPR repeat-containing 95.1 0.42 9.1E-06 36.3 9.7 93 358-453 52-147 (175)
265 KOG1941 Acetylcholine receptor 95.1 0.39 8.4E-06 43.4 11.1 198 110-307 46-274 (518)
266 PF04184 ST7: ST7 protein; In 95.1 1.5 3.2E-05 41.8 15.1 164 292-470 181-346 (539)
267 PF08631 SPO22: Meiosis protei 95.0 2.6 5.6E-05 38.1 26.1 226 220-448 4-273 (278)
268 KOG2114 Vacuolar assembly/sort 95.0 4.7 0.0001 41.0 26.6 179 72-271 335-517 (933)
269 KOG1585 Protein required for f 95.0 2.1 4.4E-05 36.7 16.8 206 108-338 32-251 (308)
270 PF13170 DUF4003: Protein of u 94.9 1.3 2.8E-05 40.1 14.3 132 156-289 78-227 (297)
271 KOG1920 IkappaB kinase complex 94.9 6.5 0.00014 41.8 23.9 113 317-451 942-1056(1265)
272 COG0457 NrfG FOG: TPR repeat [ 94.8 2.5 5.3E-05 36.5 28.8 221 257-481 36-264 (291)
273 KOG1258 mRNA processing protei 94.7 4.7 0.0001 39.4 32.1 366 53-435 62-489 (577)
274 PRK11619 lytic murein transgly 94.7 5.9 0.00013 40.5 28.5 117 292-411 254-373 (644)
275 COG1747 Uncharacterized N-term 94.6 4.4 9.5E-05 38.8 18.6 180 104-289 63-249 (711)
276 KOG2114 Vacuolar assembly/sort 94.5 0.65 1.4E-05 46.8 12.1 246 141-412 335-589 (933)
277 KOG2396 HAT (Half-A-TPR) repea 94.4 5 0.00011 38.3 32.9 391 68-478 102-555 (568)
278 PF09613 HrpB1_HrpK: Bacterial 94.3 2.3 4.9E-05 34.1 13.1 69 82-152 21-89 (160)
279 KOG3941 Intermediate in Toll s 94.0 0.83 1.8E-05 39.9 10.3 35 366-400 140-174 (406)
280 KOG1920 IkappaB kinase complex 94.0 10 0.00022 40.4 23.2 105 287-411 947-1053(1265)
281 PF02284 COX5A: Cytochrome c o 93.7 1.5 3.3E-05 31.7 9.4 75 388-464 12-88 (108)
282 PF13170 DUF4003: Protein of u 93.7 5.4 0.00012 36.2 20.5 129 226-356 79-224 (297)
283 PF10602 RPN7: 26S proteasome 93.6 1.1 2.3E-05 37.2 10.2 97 245-341 37-140 (177)
284 COG3629 DnrI DNA-binding trans 93.4 1.1 2.3E-05 39.8 10.3 79 209-288 153-236 (280)
285 COG2976 Uncharacterized protei 93.4 2.8 6.1E-05 34.7 11.7 88 115-204 97-188 (207)
286 KOG1550 Extracellular protein 93.3 9.9 0.00021 38.3 18.3 145 225-379 228-394 (552)
287 KOG0890 Protein kinase of the 93.2 20 0.00044 41.5 23.9 150 145-303 1388-1542(2382)
288 KOG2297 Predicted translation 92.9 6.6 0.00014 34.9 14.5 198 6-229 132-341 (412)
289 PF02259 FAT: FAT domain; Int 92.8 8.5 0.00018 36.1 22.8 33 435-467 272-304 (352)
290 TIGR02561 HrpB1_HrpK type III 92.7 2.9 6.3E-05 32.9 10.5 56 83-140 22-77 (153)
291 PF10602 RPN7: 26S proteasome 92.5 2.6 5.7E-05 34.9 11.0 97 210-306 37-140 (177)
292 COG3947 Response regulator con 92.5 7.3 0.00016 34.5 16.7 70 423-492 281-357 (361)
293 PF07719 TPR_2: Tetratricopept 92.3 0.46 1E-05 26.4 4.5 30 423-452 3-32 (34)
294 KOG1550 Extracellular protein 92.2 14 0.00031 37.2 25.1 180 123-310 228-428 (552)
295 PF13176 TPR_7: Tetratricopept 91.8 0.42 9E-06 27.2 4.0 24 387-410 2-25 (36)
296 PF11207 DUF2989: Protein of u 91.7 3.4 7.4E-05 34.5 10.4 82 358-441 116-198 (203)
297 PRK15180 Vi polysaccharide bio 91.6 13 0.00028 35.5 26.5 128 77-207 295-423 (831)
298 PF13176 TPR_7: Tetratricopept 91.6 0.52 1.1E-05 26.9 4.2 23 247-269 2-24 (36)
299 PF13431 TPR_17: Tetratricopep 91.5 0.21 4.5E-06 28.1 2.4 23 104-126 10-32 (34)
300 KOG2066 Vacuolar assembly/sort 91.4 18 0.0004 36.8 25.0 23 249-271 510-532 (846)
301 COG3947 Response regulator con 91.3 10 0.00022 33.7 14.8 70 247-317 282-356 (361)
302 PF02259 FAT: FAT domain; Int 91.3 13 0.00028 34.9 24.6 66 277-342 144-212 (352)
303 PF00515 TPR_1: Tetratricopept 91.3 0.66 1.4E-05 25.8 4.4 29 423-451 3-31 (34)
304 COG4785 NlpI Lipoprotein NlpI, 91.1 8.5 0.00018 32.5 18.2 183 258-454 79-270 (297)
305 PF13431 TPR_17: Tetratricopep 91.0 0.3 6.5E-06 27.4 2.7 23 206-228 10-32 (34)
306 PF09613 HrpB1_HrpK: Bacterial 90.8 7.4 0.00016 31.2 12.6 21 431-451 54-74 (160)
307 COG2909 MalT ATP-dependent tra 90.6 23 0.0005 36.7 26.6 221 186-409 426-684 (894)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 5.1 0.00011 28.8 9.8 64 399-464 22-85 (103)
309 KOG4570 Uncharacterized conser 90.5 5.5 0.00012 35.6 11.0 96 315-412 65-163 (418)
310 KOG0890 Protein kinase of the 90.2 43 0.00094 39.1 26.1 316 113-453 1389-1734(2382)
311 COG4649 Uncharacterized protei 90.1 9 0.00019 31.1 14.2 141 33-173 54-200 (221)
312 PRK09687 putative lyase; Provi 90.1 14 0.0003 33.3 25.8 58 419-481 204-262 (280)
313 COG2976 Uncharacterized protei 90.0 10 0.00022 31.6 12.0 126 108-239 55-189 (207)
314 PF00637 Clathrin: Region in C 89.9 0.017 3.6E-07 46.2 -4.3 84 77-166 13-96 (143)
315 PRK15180 Vi polysaccharide bio 89.8 18 0.0004 34.5 14.4 126 251-379 296-421 (831)
316 KOG4234 TPR repeat-containing 89.7 11 0.00024 31.5 11.4 59 391-453 141-200 (271)
317 PF00515 TPR_1: Tetratricopept 89.6 0.81 1.7E-05 25.4 3.8 27 386-412 3-29 (34)
318 PF07035 Mic1: Colon cancer-as 89.6 10 0.00022 30.9 14.7 132 56-200 14-145 (167)
319 TIGR02561 HrpB1_HrpK type III 89.5 8.9 0.00019 30.3 11.5 51 397-453 23-76 (153)
320 PRK09687 putative lyase; Provi 89.4 16 0.00034 33.0 27.3 80 68-152 34-117 (280)
321 KOG0276 Vesicle coat complex C 89.2 6.9 0.00015 38.3 11.5 100 151-270 648-747 (794)
322 KOG4648 Uncharacterized conser 89.0 2.8 6.1E-05 37.8 8.3 50 323-373 106-155 (536)
323 PF07719 TPR_2: Tetratricopept 89.0 0.52 1.1E-05 26.2 2.7 22 146-167 7-28 (34)
324 PF07035 Mic1: Colon cancer-as 88.7 12 0.00025 30.5 16.1 25 235-259 20-44 (167)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 2.2 4.8E-05 30.6 5.9 44 160-203 27-70 (103)
326 PF06552 TOM20_plant: Plant sp 88.5 3.4 7.4E-05 33.7 7.8 108 87-204 7-136 (186)
327 KOG0276 Vesicle coat complex C 88.3 6.9 0.00015 38.3 10.8 96 187-302 649-744 (794)
328 PF11207 DUF2989: Protein of u 88.1 6 0.00013 33.1 9.1 16 280-295 179-194 (203)
329 PF13929 mRNA_stabil: mRNA sta 88.0 19 0.00041 32.1 15.7 130 120-249 141-283 (292)
330 COG4455 ImpE Protein of avirul 87.5 5.6 0.00012 33.6 8.5 77 316-393 3-81 (273)
331 PF13174 TPR_6: Tetratricopept 87.3 1.3 2.7E-05 24.3 3.6 28 425-452 4-31 (33)
332 PF10345 Cohesin_load: Cohesin 87.3 38 0.00082 34.8 33.3 149 53-202 77-252 (608)
333 KOG4570 Uncharacterized conser 86.8 12 0.00026 33.6 10.6 103 169-273 58-164 (418)
334 PF02284 COX5A: Cytochrome c o 86.7 6.9 0.00015 28.5 7.6 46 228-273 29-74 (108)
335 PF13374 TPR_10: Tetratricopep 86.3 2.2 4.8E-05 24.8 4.5 28 422-449 3-30 (42)
336 COG4455 ImpE Protein of avirul 86.1 5.1 0.00011 33.8 7.6 59 75-135 5-63 (273)
337 KOG4648 Uncharacterized conser 85.8 3.7 8E-05 37.1 7.1 96 356-456 104-200 (536)
338 PF13374 TPR_10: Tetratricopep 85.3 2.6 5.6E-05 24.5 4.5 26 246-271 4-29 (42)
339 PF13929 mRNA_stabil: mRNA sta 85.1 28 0.0006 31.1 16.6 62 276-337 199-261 (292)
340 KOG4234 TPR repeat-containing 85.0 11 0.00025 31.4 9.0 88 392-482 103-197 (271)
341 PF13181 TPR_8: Tetratricopept 84.7 2 4.3E-05 23.7 3.5 29 423-451 3-31 (34)
342 PF04097 Nic96: Nup93/Nic96; 83.6 56 0.0012 33.5 21.8 88 215-307 264-355 (613)
343 PF10345 Cohesin_load: Cohesin 83.5 57 0.0012 33.5 37.7 423 54-479 39-603 (608)
344 KOG2471 TPR repeat-containing 83.3 45 0.00098 32.2 16.6 106 324-433 250-381 (696)
345 PF07163 Pex26: Pex26 protein; 81.9 21 0.00045 31.6 9.9 57 286-342 90-146 (309)
346 KOG2063 Vacuolar assembly/sort 81.2 79 0.0017 33.5 17.5 112 357-468 599-745 (877)
347 PF07721 TPR_4: Tetratricopept 80.9 3 6.4E-05 21.6 3.0 14 148-161 9-22 (26)
348 PF10579 Rapsyn_N: Rapsyn N-te 80.9 4.5 9.8E-05 27.8 4.5 47 396-443 18-65 (80)
349 KOG1464 COP9 signalosome, subu 80.6 40 0.00086 29.7 19.0 261 153-424 40-340 (440)
350 TIGR02508 type_III_yscG type I 80.2 20 0.00044 26.1 8.3 80 85-170 19-98 (115)
351 PF13181 TPR_8: Tetratricopept 80.1 5.4 0.00012 21.9 4.2 27 386-412 3-29 (34)
352 KOG4507 Uncharacterized conser 79.8 13 0.00028 36.4 8.7 106 359-467 617-722 (886)
353 PF11663 Toxin_YhaV: Toxin wit 79.4 3 6.6E-05 32.0 3.7 32 48-81 107-138 (140)
354 PF00637 Clathrin: Region in C 79.0 0.83 1.8E-05 36.3 0.7 51 253-303 16-66 (143)
355 PF08424 NRDE-2: NRDE-2, neces 78.8 55 0.0012 30.3 16.6 119 332-452 49-185 (321)
356 PF09477 Type_III_YscG: Bacter 78.6 24 0.00052 26.0 9.9 81 84-170 19-99 (116)
357 COG2909 MalT ATP-dependent tra 78.5 92 0.002 32.7 29.4 316 49-374 294-684 (894)
358 PRK11619 lytic murein transgly 78.1 88 0.0019 32.3 35.2 326 103-446 95-464 (644)
359 COG1747 Uncharacterized N-term 78.0 71 0.0015 31.1 24.4 66 399-465 184-249 (711)
360 PF07575 Nucleopor_Nup85: Nup8 77.8 85 0.0018 31.9 19.3 21 113-133 154-174 (566)
361 smart00386 HAT HAT (Half-A-TPR 77.6 6.2 0.00013 21.2 4.0 29 435-463 1-29 (33)
362 TIGR03504 FimV_Cterm FimV C-te 76.7 5.7 0.00012 23.9 3.6 27 426-452 4-30 (44)
363 KOG1586 Protein required for f 76.5 50 0.0011 28.6 20.6 18 326-343 166-183 (288)
364 PF09477 Type_III_YscG: Bacter 76.2 21 0.00046 26.3 6.9 80 154-239 20-99 (116)
365 TIGR03504 FimV_Cterm FimV C-te 76.1 6.2 0.00013 23.7 3.7 20 252-271 7-26 (44)
366 KOG0991 Replication factor C, 75.6 53 0.0011 28.4 10.3 141 320-469 136-286 (333)
367 smart00028 TPR Tetratricopepti 75.6 6.3 0.00014 20.5 3.7 26 424-449 4-29 (34)
368 PF06552 TOM20_plant: Plant sp 75.5 25 0.00055 28.9 8.1 96 68-171 22-138 (186)
369 PF04190 DUF410: Protein of un 75.4 60 0.0013 28.9 18.2 25 208-232 89-113 (260)
370 PHA02875 ankyrin repeat protei 75.1 49 0.0011 31.9 11.9 15 456-470 349-363 (413)
371 KOG0128 RNA-binding protein SA 75.0 1.1E+02 0.0024 31.8 29.7 200 70-273 112-341 (881)
372 KOG4077 Cytochrome c oxidase, 74.4 37 0.00079 26.0 10.1 60 402-463 67-126 (149)
373 PF10579 Rapsyn_N: Rapsyn N-te 74.3 12 0.00025 25.9 5.0 45 291-335 18-64 (80)
374 PF13762 MNE1: Mitochondrial s 74.2 41 0.00089 26.6 8.8 76 424-499 42-126 (145)
375 PF07163 Pex26: Pex26 protein; 74.0 56 0.0012 29.1 10.2 88 320-407 89-181 (309)
376 PF13762 MNE1: Mitochondrial s 73.0 45 0.00098 26.4 10.9 81 247-327 42-128 (145)
377 KOG4507 Uncharacterized conser 72.4 17 0.00036 35.8 7.3 102 241-343 604-705 (886)
378 PHA02875 ankyrin repeat protei 70.9 1E+02 0.0022 29.7 14.1 71 57-132 16-90 (413)
379 KOG4642 Chaperone-dependent E3 70.6 72 0.0016 27.7 10.5 81 119-201 22-104 (284)
380 KOG4077 Cytochrome c oxidase, 69.5 49 0.0011 25.4 8.2 33 103-135 80-112 (149)
381 cd08819 CARD_MDA5_2 Caspase ac 69.2 38 0.00082 24.0 6.7 63 54-123 20-82 (88)
382 PF11846 DUF3366: Domain of un 68.3 31 0.00067 29.0 7.8 37 416-452 139-175 (193)
383 KOG0991 Replication factor C, 68.2 80 0.0017 27.4 13.7 122 324-453 169-302 (333)
384 KOG1464 COP9 signalosome, subu 67.6 89 0.0019 27.7 23.3 273 169-449 20-331 (440)
385 COG5108 RPO41 Mitochondrial DN 67.0 33 0.00071 34.4 8.1 48 389-436 33-80 (1117)
386 TIGR02508 type_III_yscG type I 66.8 43 0.00094 24.5 6.7 6 154-159 53-58 (115)
387 PF14853 Fis1_TPR_C: Fis1 C-te 66.4 22 0.00047 22.4 4.7 28 427-454 7-34 (53)
388 KOG2297 Predicted translation 66.2 1E+02 0.0022 27.9 15.2 70 291-369 267-341 (412)
389 cd08819 CARD_MDA5_2 Caspase ac 66.0 41 0.00088 23.8 6.3 66 90-160 21-86 (88)
390 COG5187 RPN7 26S proteasome re 64.2 1.1E+02 0.0024 27.5 11.5 65 106-170 114-185 (412)
391 PF00244 14-3-3: 14-3-3 protei 63.4 1E+02 0.0023 27.0 11.4 60 249-308 6-66 (236)
392 PF08424 NRDE-2: NRDE-2, neces 62.8 1.3E+02 0.0028 27.9 17.3 118 226-345 48-185 (321)
393 KOG0292 Vesicle coat complex C 62.6 15 0.00033 37.9 5.3 100 76-201 625-724 (1202)
394 KOG0686 COP9 signalosome, subu 62.1 1.5E+02 0.0032 28.2 12.0 59 178-236 153-214 (466)
395 PF12862 Apc5: Anaphase-promot 61.9 57 0.0012 23.5 7.5 23 427-449 47-69 (94)
396 PF14669 Asp_Glu_race_2: Putat 61.4 96 0.0021 25.9 17.0 175 65-268 2-205 (233)
397 KOG0376 Serine-threonine phosp 61.3 6.8 0.00015 37.3 2.5 94 356-455 11-106 (476)
398 PF13934 ELYS: Nuclear pore co 60.8 1.1E+02 0.0024 26.5 13.5 21 390-410 114-134 (226)
399 PF10366 Vps39_1: Vacuolar sor 60.7 68 0.0015 23.9 7.6 28 141-168 40-67 (108)
400 PRK10941 hypothetical protein; 60.3 92 0.002 27.9 9.3 61 143-204 184-244 (269)
401 PF09986 DUF2225: Uncharacteri 60.1 1.1E+02 0.0024 26.3 10.0 66 386-453 120-197 (214)
402 COG0735 Fur Fe2+/Zn2+ uptake r 59.6 57 0.0012 26.0 7.2 66 56-123 6-71 (145)
403 PF14689 SPOB_a: Sensor_kinase 59.5 19 0.00042 23.6 3.8 27 107-133 23-49 (62)
404 KOG1308 Hsp70-interacting prot 59.1 5.2 0.00011 36.2 1.4 85 84-170 127-212 (377)
405 PF14689 SPOB_a: Sensor_kinase 58.9 15 0.00033 24.1 3.2 25 144-168 27-51 (62)
406 PF14669 Asp_Glu_race_2: Putat 58.7 1.1E+02 0.0023 25.6 15.7 58 389-446 137-206 (233)
407 PF09454 Vps23_core: Vps23 cor 58.5 34 0.00073 22.7 4.7 50 418-467 5-54 (65)
408 PF11846 DUF3366: Domain of un 57.9 34 0.00073 28.8 6.1 42 128-169 132-173 (193)
409 PF11663 Toxin_YhaV: Toxin wit 57.7 14 0.00029 28.6 3.1 26 471-498 113-138 (140)
410 KOG1586 Protein required for f 57.2 1.3E+02 0.0029 26.1 20.7 23 359-381 164-186 (288)
411 PF11817 Foie-gras_1: Foie gra 56.6 57 0.0012 28.8 7.5 60 388-447 182-244 (247)
412 KOG2396 HAT (Half-A-TPR) repea 56.1 2.1E+02 0.0045 28.1 34.8 385 89-497 89-539 (568)
413 PF09670 Cas_Cas02710: CRISPR- 55.8 1.9E+02 0.0041 27.6 11.5 56 148-204 139-198 (379)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 95 0.0021 24.0 8.9 44 89-132 81-124 (126)
415 COG0735 Fur Fe2+/Zn2+ uptake r 54.8 80 0.0017 25.1 7.3 62 231-293 8-69 (145)
416 PRK10941 hypothetical protein; 54.7 1.6E+02 0.0035 26.4 10.8 63 388-453 185-247 (269)
417 PF04762 IKI3: IKI3 family; I 54.1 1.6E+02 0.0035 32.0 11.5 29 210-238 813-843 (928)
418 KOG2034 Vacuolar sorting prote 53.8 3E+02 0.0064 29.2 26.6 68 113-192 364-433 (911)
419 PF00244 14-3-3: 14-3-3 protei 53.5 1.6E+02 0.0034 25.9 12.2 60 214-273 6-66 (236)
420 PF11848 DUF3368: Domain of un 53.4 51 0.0011 20.2 5.2 31 432-462 13-44 (48)
421 cd00280 TRFH Telomeric Repeat 53.2 1.3E+02 0.0029 25.0 11.6 45 124-168 86-139 (200)
422 KOG0376 Serine-threonine phosp 52.5 35 0.00077 32.7 5.6 105 78-186 11-116 (476)
423 KOG0545 Aryl-hydrocarbon recep 51.9 1.6E+02 0.0034 25.9 8.7 55 426-480 235-291 (329)
424 KOG0686 COP9 signalosome, subu 51.4 2.2E+02 0.0048 27.1 14.2 61 246-307 152-215 (466)
425 PF14853 Fis1_TPR_C: Fis1 C-te 50.8 61 0.0013 20.5 4.8 22 390-411 7-28 (53)
426 COG0790 FOG: TPR repeat, SEL1 50.7 1.9E+02 0.0042 26.1 20.9 17 152-168 53-69 (292)
427 PRK10564 maltose regulon perip 50.7 37 0.0008 30.6 5.2 38 210-247 258-295 (303)
428 PF09454 Vps23_core: Vps23 cor 50.5 53 0.0012 21.8 4.7 51 68-120 5-55 (65)
429 COG0790 FOG: TPR repeat, SEL1 50.2 2E+02 0.0042 26.1 22.0 45 366-413 172-220 (292)
430 COG4259 Uncharacterized protei 50.1 83 0.0018 22.9 5.8 53 90-143 56-108 (121)
431 PF07064 RIC1: RIC1; InterPro 48.6 2E+02 0.0043 25.7 12.8 39 74-115 85-123 (258)
432 PF12862 Apc5: Anaphase-promot 48.1 88 0.0019 22.5 6.1 17 186-202 52-68 (94)
433 KOG4642 Chaperone-dependent E3 47.1 2E+02 0.0043 25.2 11.2 19 252-270 86-104 (284)
434 PF04910 Tcf25: Transcriptiona 46.1 2.7E+02 0.0058 26.4 17.8 156 75-236 14-220 (360)
435 PF11848 DUF3368: Domain of un 45.8 69 0.0015 19.6 5.2 31 361-391 14-44 (48)
436 KOG0687 26S proteasome regulat 45.8 2.5E+02 0.0053 25.9 15.9 96 245-342 105-209 (393)
437 KOG1308 Hsp70-interacting prot 45.4 17 0.00037 33.1 2.4 90 187-278 126-216 (377)
438 PRK10564 maltose regulon perip 44.7 49 0.0011 29.8 5.0 30 352-381 260-289 (303)
439 PF03745 DUF309: Domain of unk 44.5 76 0.0016 20.8 4.7 17 291-307 11-27 (62)
440 KOG2659 LisH motif-containing 43.4 2.2E+02 0.0047 24.6 8.9 101 65-165 20-128 (228)
441 KOG3364 Membrane protein invol 42.8 1.6E+02 0.0036 23.1 10.0 70 382-454 30-104 (149)
442 PF14561 TPR_20: Tetratricopep 42.7 1.2E+02 0.0027 21.6 9.1 33 68-100 19-51 (90)
443 COG5191 Uncharacterized conser 42.7 68 0.0015 29.0 5.5 70 386-458 109-179 (435)
444 PF10366 Vps39_1: Vacuolar sor 42.0 1.5E+02 0.0031 22.2 7.9 26 247-272 42-67 (108)
445 KOG3807 Predicted membrane pro 42.0 2.8E+02 0.0061 25.5 10.6 59 181-239 281-341 (556)
446 KOG0403 Neoplastic transformat 41.3 3.4E+02 0.0074 26.3 20.4 373 75-470 218-631 (645)
447 KOG3677 RNA polymerase I-assoc 41.0 3.3E+02 0.0072 26.0 10.0 56 111-167 239-299 (525)
448 KOG4567 GTPase-activating prot 40.7 2.1E+02 0.0045 26.1 8.0 58 369-433 263-320 (370)
449 PF07575 Nucleopor_Nup85: Nup8 40.5 2.7E+02 0.0059 28.3 10.3 25 140-165 149-173 (566)
450 KOG2062 26S proteasome regulat 39.7 4.6E+02 0.01 27.3 24.2 46 428-473 508-556 (929)
451 PF04097 Nic96: Nup93/Nic96; 39.0 4.6E+02 0.0099 27.1 21.7 215 145-378 116-356 (613)
452 PHA00425 DNA packaging protein 38.9 1.3E+02 0.0028 20.7 5.3 54 436-498 14-67 (88)
453 PF10255 Paf67: RNA polymerase 38.6 3.5E+02 0.0075 26.0 9.8 55 113-167 128-191 (404)
454 KOG2062 26S proteasome regulat 38.4 4.8E+02 0.01 27.2 25.2 120 358-481 510-634 (929)
455 PF11817 Foie-gras_1: Foie gra 37.9 1E+02 0.0022 27.2 6.1 56 180-235 183-244 (247)
456 KOG2300 Uncharacterized conser 37.9 4E+02 0.0088 26.2 31.8 360 84-448 60-512 (629)
457 KOG4814 Uncharacterized conser 37.7 2.7E+02 0.0057 28.4 9.0 57 389-449 399-456 (872)
458 KOG1839 Uncharacterized protei 37.7 5.5E+02 0.012 28.8 12.0 111 197-307 960-1085(1236)
459 PRK13342 recombination factor 37.6 3.9E+02 0.0084 25.9 16.4 23 258-280 244-266 (413)
460 KOG4279 Serine/threonine prote 37.5 5E+02 0.011 27.1 14.1 25 430-454 375-399 (1226)
461 PRK11639 zinc uptake transcrip 36.3 2.4E+02 0.0052 23.1 7.9 58 236-294 18-75 (169)
462 PF09670 Cas_Cas02710: CRISPR- 36.1 3.9E+02 0.0085 25.5 11.6 18 221-238 143-160 (379)
463 KOG4521 Nuclear pore complex, 36.1 6.5E+02 0.014 28.0 13.8 118 178-301 986-1124(1480)
464 PF10255 Paf67: RNA polymerase 36.0 4E+02 0.0088 25.6 13.4 61 211-271 124-191 (404)
465 PF09868 DUF2095: Uncharacteri 35.1 1.5E+02 0.0033 22.2 5.4 27 77-103 67-93 (128)
466 cd00280 TRFH Telomeric Repeat 34.4 2.8E+02 0.006 23.2 12.6 48 295-342 85-139 (200)
467 PRK09857 putative transposase; 34.3 3E+02 0.0066 25.1 8.6 26 251-276 247-272 (292)
468 PF14561 TPR_20: Tetratricopep 33.8 1.8E+02 0.0039 20.8 8.8 29 208-236 21-49 (90)
469 COG4003 Uncharacterized protei 33.8 1.6E+02 0.0036 20.4 5.5 40 427-466 37-76 (98)
470 KOG3807 Predicted membrane pro 33.7 3.9E+02 0.0084 24.7 13.3 58 353-412 279-339 (556)
471 PF09868 DUF2095: Uncharacteri 33.4 2.1E+02 0.0045 21.5 5.9 43 427-469 67-109 (128)
472 KOG0545 Aryl-hydrocarbon recep 33.2 3.4E+02 0.0074 23.9 9.3 96 143-238 181-293 (329)
473 PF12793 SgrR_N: Sugar transpo 32.9 1.9E+02 0.0041 21.9 6.0 23 44-66 25-47 (115)
474 PRK13342 recombination factor 32.8 4.6E+02 0.01 25.3 18.2 24 327-350 243-266 (413)
475 COG2256 MGS1 ATPase related to 32.8 4.5E+02 0.0098 25.2 15.2 93 247-339 249-349 (436)
476 PF04090 RNA_pol_I_TF: RNA pol 32.7 3.1E+02 0.0067 23.3 8.1 26 387-412 44-69 (199)
477 PRK09462 fur ferric uptake reg 32.7 2.5E+02 0.0055 22.3 7.2 58 235-293 8-66 (148)
478 PRK09857 putative transposase; 32.6 3.3E+02 0.0071 24.8 8.5 63 425-487 210-274 (292)
479 KOG4567 GTPase-activating prot 32.6 3.9E+02 0.0085 24.5 10.5 43 161-203 264-306 (370)
480 KOG3364 Membrane protein invol 32.4 2.5E+02 0.0054 22.1 9.0 22 390-411 77-98 (149)
481 KOG4279 Serine/threonine prote 32.2 6.2E+02 0.013 26.6 15.3 189 192-412 180-394 (1226)
482 PRK11639 zinc uptake transcrip 31.7 2.8E+02 0.0061 22.7 7.3 60 270-330 17-76 (169)
483 PF12926 MOZART2: Mitotic-spin 31.1 2E+02 0.0042 20.5 7.9 43 265-307 29-71 (88)
484 PF11838 ERAP1_C: ERAP1-like C 30.5 4.3E+02 0.0093 24.2 18.8 112 295-411 146-264 (324)
485 KOG2066 Vacuolar assembly/sort 30.5 6.6E+02 0.014 26.4 28.1 74 71-152 392-467 (846)
486 COG4976 Predicted methyltransf 30.4 1.4E+02 0.0029 26.0 5.2 52 360-412 6-57 (287)
487 PRK14956 DNA polymerase III su 30.4 5.5E+02 0.012 25.5 11.5 99 53-174 183-282 (484)
488 KOG4521 Nuclear pore complex, 29.7 8.3E+02 0.018 27.3 13.3 127 74-200 986-1127(1480)
489 PRK07003 DNA polymerase III su 29.7 6E+02 0.013 27.1 10.4 112 38-152 163-291 (830)
490 COG4259 Uncharacterized protei 29.1 2.3E+02 0.0051 20.7 6.8 23 430-452 81-103 (121)
491 PRK12323 DNA polymerase III su 28.8 6.9E+02 0.015 26.1 12.4 28 143-171 254-281 (700)
492 PRK14700 recombination factor 28.8 4.6E+02 0.0099 24.0 11.4 45 214-258 128-175 (300)
493 COG2178 Predicted RNA-binding 28.7 3.6E+02 0.0078 22.8 8.5 17 359-375 39-55 (204)
494 PRK09462 fur ferric uptake reg 28.1 3.1E+02 0.0067 21.8 7.0 63 59-123 5-68 (148)
495 KOG2422 Uncharacterized conser 28.1 6.4E+02 0.014 25.5 18.6 96 356-451 349-449 (665)
496 PF03745 DUF309: Domain of unk 28.1 1.8E+02 0.0039 19.1 5.9 47 395-443 10-61 (62)
497 COG5108 RPO41 Mitochondrial DN 27.1 7.1E+02 0.015 25.7 11.1 74 318-394 32-113 (1117)
498 PF04762 IKI3: IKI3 family; I 26.7 8.8E+02 0.019 26.7 17.3 28 281-308 814-843 (928)
499 PF02847 MA3: MA3 domain; Int 26.6 2.3E+02 0.005 21.0 5.7 63 388-454 6-70 (113)
500 PF14929 TAF1_subA: TAF RNA Po 26.3 6.9E+02 0.015 25.3 15.0 181 121-304 272-480 (547)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-65 Score=519.06 Aligned_cols=450 Identities=14% Similarity=0.178 Sum_probs=423.1
Q ss_pred cHHHHHhhhcccC--CcHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHH
Q 010458 40 TLGRRLLSLVYAK--RSAAITMRKWKEEGH-TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116 (510)
Q Consensus 40 ~~~~~l~~~~~~~--~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (510)
.+......++..+ .+|.++|++|.+.|+ +++...++.++..|.+.|.+++|+.+|+.|.. |+..+|+.++.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHH
Confidence 3344444444333 899999999999985 57888889999999999999999999999863 689999999999
Q ss_pred HHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 117 ISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
|++.|++++|.++|+.|.+.+ ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999885 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK--TKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.++|+.|.+. ..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987 789999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... ++.||..+|+.++.+|
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH----c------------C-------C--ChHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK----A------------G-------K--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~------------g-------~--~a~~~~~~m~~~~~~ 485 (510)
++.|++++|.+++++|.+.|+. +..+|++++..|.+ . | . +|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999987 78999999876542 1 1 1 589999999999999
Q ss_pred CCHHHHHHHHh
Q 010458 486 MDAETQKVLKI 496 (510)
Q Consensus 486 pd~~t~~~l~~ 496 (510)
||..||..++.
T Consensus 845 Pd~~T~~~vL~ 855 (1060)
T PLN03218 845 PTMEVLSQVLG 855 (1060)
T ss_pred CCHHHHHHHHH
Confidence 99999999994
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-64 Score=515.67 Aligned_cols=466 Identities=15% Similarity=0.145 Sum_probs=423.3
Q ss_pred CCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 36 GGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 36 ~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
.+++.+....+...+.. .+|..+++.|.. |+..+|+.++.+|++.|++++|.++|+.|.+.+ +.|+..+|+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tyn 476 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYT 476 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 34555555443322222 778888887753 899999999999999999999999999999986 889999999
Q ss_pred HHHHHHHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 010458 112 VHLDLISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 189 (510)
.++.+|++.|++++|.++|++|.+.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999875 6899999999999999999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
++++|.++|++|... ..||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999763 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.++.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010458 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 426 (510)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+. ++.||..+|+.
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tyns 794 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRC 794 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHH----c-------------------CCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 427 AYNKLEE----Q-------------------GDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 427 l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
++..|.+ . +..++|..+|++|.+.|.. +..+|+.++.+++..+. .+..+++.|.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9876532 1 1246799999999999986 78999999977766666 7788888888
Q ss_pred hCCCCCCHHHHHHHHhhcCCcccccccc
Q 010458 481 KDNVQMDAETQKVLKITSEMPVSEVSSI 508 (510)
Q Consensus 481 ~~~~~pd~~t~~~l~~~~~~~~~~~~~~ 508 (510)
..+..|+..||++|+..+.....++..+
T Consensus 875 ~~~~~~~~~~y~~Li~g~~~~~~~A~~l 902 (1060)
T PLN03218 875 ISADSQKQSNLSTLVDGFGEYDPRAFSL 902 (1060)
T ss_pred cCCCCcchhhhHHHHHhhccChHHHHHH
Confidence 8899999999999999875333344433
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-61 Score=502.27 Aligned_cols=455 Identities=19% Similarity=0.151 Sum_probs=421.2
Q ss_pred CCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHH
Q 010458 37 GRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112 (510)
Q Consensus 37 ~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 112 (510)
.++.+.++.+...+.+ ++|.++|++|.+.|+.||..+|+.++++|++.+++..+.+++..+.+.+ +.++..+++.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhH
Confidence 4566666666655544 8999999999999999999999999999999999999999999999886 8899999999
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 192 (510)
++.+|++.|++++|.++|+.|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999986 4889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 193 ~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.+.+++..+.+. ..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988 78999999999999999999999999999996 4788999999999999999999999999999
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|. .+|..+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs 457 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVIS 457 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 468899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. ++.++..+++.++.+|
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~--g~~~~~~~~naLi~~y 534 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFDGFLPNALLDLY 534 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh--CCCccceechHHHHHH
Confidence 99999999999999999999999986 58999999999999999999999999999999987 8989999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC--Cccccccc
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE--MPVSEVSS 507 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~--~~~~~~~~ 507 (510)
+++|++++|.++|+++ .++..+||++|.+|++.|+ +|.++|++|.+.|+.||..||+.++.+|. +.+++..+
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 9999999999888887 4577889999999999988 88899999998899999999999988884 55666555
Q ss_pred cc
Q 010458 508 IF 509 (510)
Q Consensus 508 ~~ 509 (510)
+|
T Consensus 611 ~f 612 (857)
T PLN03077 611 YF 612 (857)
T ss_pred HH
Confidence 54
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-59 Score=472.50 Aligned_cols=420 Identities=17% Similarity=0.196 Sum_probs=226.6
Q ss_pred CcHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEG-HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
.+|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.+ +.|+..+|+.++..|++.|++++|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 56666666665542 45666666666666666666666666666666554 55566666666666666666666666666
Q ss_pred hcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC---
Q 010458 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP--- 207 (510)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--- 207 (510)
.|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+. ..|
T Consensus 183 ~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 183 EMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred cCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 6654 3566666666666666666666666666665555555555555444444444444444444444443 334
Q ss_pred ----------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 208 ----------------------------DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 208 ----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555442 23444555555555555555555555555
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-----~~~ 491 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-----PFK 491 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-----CCC
Confidence 55555555555555555555555555555555555543 344555555555555555555555555554443 334
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV 484 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~ 484 (510)
|+..+|+.++.+|...|+++.|..+++++.+.+|.+..+|+.|+..|++.|+ +|.+++++|++.|+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555555555544444444455555555555555 55555555555554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-58 Score=468.72 Aligned_cols=416 Identities=17% Similarity=0.232 Sum_probs=394.2
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC--CChhhHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM--RGPDTCS 144 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 144 (510)
..++...|+.+|..+.+.|++++|+++|++|...+++.++..+|+.++.+|.+.++++.|.+++..+.+.+ |+..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45567789999999999999999999999999876577899999999999999999999999999998875 7899999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcC
Q 010458 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 223 (510)
.++.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. ..|+..+|+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 89999999999999999999999999999887 7889999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
+.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 589999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC-CHHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHV-STEIYNSL 461 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l 461 (510)
..+|+.||.+|++.|+.++|+++|++|.+. |+.||..||+.++.+|.+.|++++|.++|+.|.+ .+.. +..+|+.+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 999999999999999999999999999998 9999999999999999999999999999999986 4554 67899999
Q ss_pred HHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 462 LRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 462 ~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
+++|++.|+ +|.+++++| ++.||..+|+.|+.+|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 999999999 899888776 78999999999999984
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-59 Score=484.42 Aligned_cols=443 Identities=17% Similarity=0.202 Sum_probs=373.2
Q ss_pred cCCCCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChh
Q 010458 33 KGAGGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (510)
..|..++....+.+..++.+ ++|..+|++|. .||..+||.+|.+|++.|++++|+++|++|.+.+ +.|+..
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ 289 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLM 289 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChh
Confidence 34455566555555554444 66777777764 4567777777777777777788888888877764 677777
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
+|+.++.+|++.|+.+.|.+++..+.+.+ ||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 88888888888888888888877777664 6777888888888888888888888888764 67778888888888
Q ss_pred hCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
+.|++++|+++|++|.+. ..||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888766 6788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
+|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|.
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 8888754 4777888888888888888888888888875 4889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
.+|..++++|+.+|++.|++++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+. ++.||..||+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~ 593 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFI 593 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHH
Confidence 999999999999999999999999999887 579999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hCCCC-CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLR-NAGHV-STEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
.++.+|.+.|++++|.++|++|. +.+.. +..+|+.++++|++.|+ +|.+++++| +++||..+|+.|+.+|.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998 56664 78999999999999999 999999998 58999999999999994
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-29 Score=265.05 Aligned_cols=430 Identities=15% Similarity=0.056 Sum_probs=352.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|..+++.+.... +.++..|..+...+...|++++|.+.|+++.+.. |.+...+..++..+...|++++|.+.++.
T Consensus 448 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 448 DKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888888877643 5677788888888888999999999998888764 56677788888888888999999999988
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+....| +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|.++++.+.+..+.+..+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 877765 46778888888888999999999998887765 2356677788888889999999999999888777778888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...|+++.+..+. +..++..++..+..
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999999887654 345677888888899999999999999988876443 67788888889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+.+.. |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999888764 3456677788888889999999999999888754 4446777788888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++++.+..+ .+...+..+...|...|++++|.+.|+++.+ ..+++..++..+...+...|+ .+|...++++.+..
T Consensus 759 ~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 759 LEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999888653 3677888888889999999999999999987 345677888888889999998 78999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhh
Q 010458 452 HVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKIT 497 (510)
Q Consensus 452 ~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~ 497 (510)
+.++..+..+...+...|+ +|...++++.+.+.. |..++..+..+
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 8788888889999999998 899999999886643 66665555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.1e-29 Score=265.24 Aligned_cols=414 Identities=15% Similarity=0.123 Sum_probs=370.5
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|.+.++++.+.. +.+...+..++..+...|++++|.+.|+.+.+.. |.+...+..+...+...|+.++|...+++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88999999988754 5567788889999999999999999999998875 67888999999999999999999999999
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+....| +...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+..+.+...
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 987766 46788889999999999999999999998754 4467889999999999999999999999998887778889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.++. +...+..+...+..
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHH
Confidence 9999999999999999999999998764 456788999999999999999999999999988644 77888999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.|++++|...|+.+...+ |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|+.++|..+
T Consensus 716 ~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred CCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999998854 555778888999999999999999999998765 44778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
|+++.+.++ ++...++.+...+...|+ .+|+.+++++.+. .+-+..++..+...+...|++++|..+++++.+.+
T Consensus 793 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 793 YRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL---APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998764 478889999999999999 8899999999874 33456677888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 452 HVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 452 ~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
+.++.++..+..++.+.|+ +|.+++++|.
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999 9999999985
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.9e-23 Score=188.64 Aligned_cols=370 Identities=16% Similarity=0.183 Sum_probs=309.0
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH-HHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHM 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 181 (510)
|.-.++|..+...+-..|++++|+.+++.+.+..|+ ...|-.+..++...|+.+.|...|.+..+.+ |+.... ..+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 334566888888888899999999999999888775 7889999999999999999999998888865 554433 334
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELP 260 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 260 (510)
...+-..|++++|...|.+..+..+--..+|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|-..+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 445556789999999998888776666788999999999999999999999998765 344 56788899999999999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+.|...|.+.....+. ....+..+...|...|+.|.|+..|++..+ ..|+ ...|+.+..++-..|++.+|.+.|.+
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999988876443 567888899999999999999999999988 4455 46799999999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p 419 (510)
.....+. .....+.|...|...|.+++|..+|....+..+. -...++.|...|-++|++++|+..|++++ .+.|
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal----rI~P 419 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL----RIKP 419 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH----hcCc
Confidence 9876533 4567788999999999999999999999886332 34578889999999999999999999998 5677
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH
Q 010458 420 D-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA 488 (510)
Q Consensus 420 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~ 488 (510)
+ ...|+.+...|-..|+.+.|.+.+.+....+|.-.+.++.|...|...|+ +|++-+++..+ ++||.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 7 45889999999999999999999999999988888899999999999999 88888888865 45554
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.9e-23 Score=186.66 Aligned_cols=386 Identities=16% Similarity=0.126 Sum_probs=332.8
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH-HHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-SAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l 146 (510)
+--..+|.-+...+-..|++++|+..++.+.+.. |...+.|..+..++...|+.+.|.+.|....+.+|+.... ..+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 4466789999999999999999999999999875 7788999999999999999999999999999998864433 334
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (510)
...+...|+.++|...|.+..+.. |. ...|..|...+...|+...|++.|++..+..+.-..+|-.|...|-..+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 455566899999999999988865 43 568999999999999999999999999887666788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.|...|.+..... +.....+..+...|...|.++-|+..|++..+..+. -...|+.|..++-..|++.+|.+.|.+.
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999976653 334677888889999999999999999999987444 4679999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 010458 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-Y 384 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 384 (510)
.... +......+.+...+...|.++.|..+|....+..+. -....+.|...|-.+|++++|+..|++.++. .|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8853 224567889999999999999999999998864322 3456889999999999999999999999985 455 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
..|+.+...|-..|+.+.|++.+.+++. +.|. ...++.|...|-..|++.+|+.-+++..+..|..+..|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 5899999999999999999999999994 4665 5688999999999999999999999999999987777777776
Q ss_pred HHHH
Q 010458 464 TYAK 467 (510)
Q Consensus 464 ~~~~ 467 (510)
++--
T Consensus 499 ~lq~ 502 (966)
T KOG4626|consen 499 CLQI 502 (966)
T ss_pred HHHH
Confidence 6543
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.3e-21 Score=206.19 Aligned_cols=405 Identities=11% Similarity=-0.013 Sum_probs=245.0
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh---hhHH----------
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP---DTCS---------- 144 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~---------- 144 (510)
...+...|++++|+..|++..+.. |.++..+..+..++.+.|++++|+..|++..+..|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344555666666776666666653 4566666666666666667777766666666554431 1111
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH---
Q 010458 145 --ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC--- 219 (510)
Q Consensus 145 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--- 219 (510)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|.+.|++..+..+.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 123345566666667666666666532 23445555666666666666666666666655444444444444443
Q ss_pred ---------------------------------------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 220 ---------------------------------------ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 220 ---------------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
...|++++|.+.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34445555555555544432 11233344444455555555
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh---------hhHHHHHHHHHhcCCHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND---------AEYTCVISSLVKLGEFE 331 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~ 331 (510)
++|...++++.+..+. +...+..+...+...++.++|...++.+......++. ..+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555554443222 2233333333334445555555544443221111110 01122344556667777
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+|..+++. .+.+...+..+...+.+.|++++|+..|++..+..+. +...+..++..+...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77776661 2445667778888999999999999999999987543 67788899999999999999999999887
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-H-----HHHHHHHHHHHHcCC--ChHHHHHHHH-hC
Q 010458 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-T-----EIYNSLLRTYAKAGK--MPLIIVERMQ-KD 482 (510)
Q Consensus 412 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~g~--~a~~~~~~m~-~~ 482 (510)
+. -+.+..++..+..++...|++++|.++++++....+.+ + ..+..+...+...|+ +|+..|++.. ..
T Consensus 665 ~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 665 AT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred cc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 53 22345667778888999999999999999998765532 2 456677888889999 8999988875 34
Q ss_pred CCCC----CHHHHHHHHh
Q 010458 483 NVQM----DAETQKVLKI 496 (510)
Q Consensus 483 ~~~p----d~~t~~~l~~ 496 (510)
|+.| +..++..+.+
T Consensus 742 ~~~~~~p~~~~~~~~l~~ 759 (1157)
T PRK11447 742 GITPTRPQDNDTFTRLTR 759 (1157)
T ss_pred CCCCCCCCCchHHHHHhc
Confidence 4432 2234555543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=6.7e-21 Score=203.86 Aligned_cols=418 Identities=11% Similarity=0.009 Sum_probs=288.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC---------------cccChh---hH----
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD---------------IKLVSG---DY---- 110 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~---~~---- 110 (510)
++|.+.++++.+.. |-+...+..+...+...|++++|+..++++.+.+. .+.++. .+
T Consensus 164 ~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l 242 (1157)
T PRK11447 164 PEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYL 242 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 88999999998875 55777888999999999999999999998754320 000000 00
Q ss_pred ------------------------------HHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHH
Q 010458 111 ------------------------------AVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEA 159 (510)
Q Consensus 111 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 159 (510)
......+...|++++|+..|++..+..| ++..+..+..++.+.|++++|
T Consensus 243 ~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA 322 (1157)
T PRK11447 243 QVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARA 322 (1157)
T ss_pred HHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 0123455677999999999999988877 578889999999999999999
Q ss_pred HHHHHHHHhCCCCC-CcchHH------------HHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 160 EALMEKMSECGFLK-CPLPYN------------HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 160 ~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+..|++..+..... ....|. .....+.+.|++++|...|++..+..+.+...+..+..++...|+++
T Consensus 323 ~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 323 VAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999988765221 111222 22445678899999999999999887778888888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH------------------------------------------HhcCChHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLY------------------------------------------IKMELPEKAA 264 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~------------------------------------------~~~g~~~~A~ 264 (510)
+|++.|+++.+.. +.+...+..+...| ...|++++|+
T Consensus 403 eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 403 AAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999987653 22344444444333 3345555555
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
+.|++..+..+. +...+..+...|.+.|++++|...++++...... +...+..+...+...++.++|...++.+....
T Consensus 482 ~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 482 ELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 555555554332 3444455555555555555555555555442211 22222222333344555555555555433211
Q ss_pred CCCCc---------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 010458 345 GTGDP---------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415 (510)
Q Consensus 345 ~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 415 (510)
..++. ..+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.|+++++.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-- 632 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-- 632 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 11111 0112334556667777777777661 1335566778888999999999999999999973
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 416 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.+.+...+..++..+...|++++|.+.++.+.+..+.++..+..+..++...|+ +|.++++++...
T Consensus 633 -~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 633 -EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 344678889999999999999999999999998888788888889999999999 899999998764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-20 Score=189.61 Aligned_cols=398 Identities=12% Similarity=0.022 Sum_probs=293.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 151 (510)
.+......+.+.|++++|+..|+...+.. |++..|..+..++.+.|++++|++.++...+..|+ ...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35566778889999999999999998764 56788999999999999999999999999988774 678899999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCC-------------------------
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS------------------------- 206 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------- 206 (510)
..|++++|+..|......+.. +......++..+... .+........+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999999888766543211 111111111111100 01111111111100
Q ss_pred -------C-ChhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 207 -------P-DVVTYNLWLAAC---ASQNDKETAEKAFLELKKTK-IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 207 -------~-~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
+ ....+..+...+ ...+++++|.+.|++..+.+ ..| ....|..+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 001111111111 22467899999999988764 223 4566888888999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH
Q 010458 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
.+. +...|..+...+...|++++|...|+++..... .+...+..+...+...|++++|...|++..+..+ .+...+.
T Consensus 361 ~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~ 437 (615)
T TIGR00990 361 DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHI 437 (615)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHH
Confidence 443 466888899999999999999999999987532 2457788889999999999999999999987653 3566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC---CH-HHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP---DH-RLITAAYN 429 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p---~~-~~~~~l~~ 429 (510)
.+..++.+.|++++|...|++..+..+ .+...+..+...+...|++++|++.|++++...+...+ +. ..++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 888999999999999999999988642 35778889999999999999999999999864111111 11 11222223
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.+...|++++|.+++++..+.++.+...+..+...+.+.|+ +|+..|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456999999999999999888888899999999999999 899999988764
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.9e-22 Score=191.51 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=147.5
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 262 (510)
...|++++|...|+++.+..+.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444333444444444444555555555555544443221111 1234444555555555555
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND----AEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
|..+|+++.+..+ ++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555544321 23444555555555555555555555555443222111 123334444555566666666665
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++.+|...|++++|...++++.+. .
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~----~ 279 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE----Y 279 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Confidence 555432 12233455555566666666666666666655432222344555666666666666666666666542 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCC--ChHHHHHHHHhCCCCCCHH
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK---AGK--MPLIIVERMQKDNVQMDAE 489 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--~a~~~~~~m~~~~~~pd~~ 489 (510)
|+...+..++..+.+.|++++|..+++++.+..|. ...++.++..+.. .|+ +++.++++|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45555555666666666666666666666555432 2345545544443 223 5566666666555555544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.1e-22 Score=191.37 Aligned_cols=294 Identities=13% Similarity=0.048 Sum_probs=154.7
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhCCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHMLNLYISNGQ 190 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 190 (510)
..+...|++++|...|+++.+.+|+ ..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344556666666666666655543 44556666666666666666666666555321111 1234555555556666
Q ss_pred cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 010458 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+++|..+|+++.+..+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666666666655544445555556666666666666666666665544322211 1233445555556666666666
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
|+++.+..+. +...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 6665554322 334455555555566666666666665554322211234455555555555555555555555543 2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhc
Q 010458 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK---KGQMEKVLECFKKAIGS 413 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 413 (510)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++.+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 33334455555555555555555555555544 3455555555544442 33555555555555543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.4e-20 Score=188.57 Aligned_cols=367 Identities=11% Similarity=-0.008 Sum_probs=284.2
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHh
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQ 152 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 152 (510)
...++..+.+.|++++|+.+++...... |..+..+..++......|++++|...++++....|+ +..+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4566778889999999999999998874 677778888888888899999999999999988774 6788888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+...+..+. .+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 999999999999998864 225667888899999999999999999988766555555554443 477889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHh
Q 010458 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE----VLRIWKKMMSL 308 (510)
Q Consensus 233 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 308 (510)
+.+.+....++...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|++++ |...++++...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99877643344555566678888999999999999999987544 67788889999999999885 79999998875
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 010458 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTW 387 (510)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 387 (510)
.+ .+...+..+...+...|++++|...++...+..+. +...+..+..++...|++++|...++++.+.+ |+. ..+
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 32 24567888899999999999999999998876433 45667788899999999999999999998864 443 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
..+..++...|++++|...|+++.+......|. ......+-.++...+..++...+..++.-
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 445677889999999999999998652111111 11233344444455555544455555544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3.6e-20 Score=189.62 Aligned_cols=414 Identities=11% Similarity=0.017 Sum_probs=269.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 146 (510)
+.++....-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.....| ++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4555556666667777788888888877776532 45555677777788888888888888888776655 35666777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 777778888888888888877653 22344 7777777778888888888888887776667777677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-cCCCChh-hHH----HHH
Q 010458 227 TAEKAFLELKKTKIDPDW------ISYSTLTSLYI-----KMELP---EKAATTLKEMEKR-TCRKNRV-AYS----SLL 286 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l~ 286 (510)
.|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 78777766543 2221 01112222221 11223 6677777777654 1222221 111 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINR 362 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 362 (510)
..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|+..|+.+.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667888888888887776432 222 22224667777888888888888776533211 122345556667778
Q ss_pred CCHHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGI-----------KPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
|++++|..+++.+.+..+ .|+. ..+..+...+...|++++|++.++++.. ..+.+...+..+.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 888888888887776521 1221 2345566677778888888888888876 3444566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVL 494 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l 494 (510)
..+...|++++|++.++++....|.+...+..++..+.+.|+ .|..+++++.+. .|+......+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 888888888888888888888877777777777777777777 778888887752 3444443333
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.1e-20 Score=184.49 Aligned_cols=376 Identities=9% Similarity=-0.007 Sum_probs=299.5
Q ss_pred HHhccChHHHHHHHHHHHHcc-CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHH
Q 010458 81 LRKLKRYKHALEVCEWMELQY-DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAE 158 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 158 (510)
+.++.+|+...-+|....++. .-..+......++..+.+.|+.++|..+++......|+ +..+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 456777777766676655431 01123344566777888999999999999999888775 6677777788888999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 159 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
|...|+++.+... .+...+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999998762 256678889999999999999999999999887778899999999999999999999999988665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++++..... .+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 432 33344333 34788999999999999998875444555666677889999999999999999988642 2456778
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 319 CVISSLVKLGEFEK----AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 319 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+...+...|++++ |...|+.+.+..+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 88899999999986 8999999987653 36778899999999999999999999999987543 556778889999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYA 466 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 466 (510)
.+.|++++|...|+++... .|+.. .+..+..++...|++++|...|++..+..|. .+..|...+..|.
T Consensus 329 ~~~G~~~eA~~~l~~al~~----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 9999999999999999864 45543 3444677899999999999999999988776 3444444444433
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.2e-19 Score=183.91 Aligned_cols=411 Identities=10% Similarity=0.003 Sum_probs=309.1
Q ss_pred CCCCCccHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 34 GAGGRDTLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
....+..+.-.+.+....+ .+|.+++.+..... +.+...+..+...+...|++++|+++++...+.. |.++..+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 3445555554444444444 88888888877632 5566679999999999999999999999998874 67788888
Q ss_pred HHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 112 VHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
.++.++...|++++|+..++++.+..|+ +. +..+..++...|+.++|+..++++.+.... +...+..+..++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999888774 56 888999999999999999999999987522 44566777888888999
Q ss_pred cCcHHHHHHHHHhCCCCCh------hHHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHH
Q 010458 191 LDKVPQMLQELKKNTSPDV------VTYNLWLAACAS-----QNDK---ETAEKAFLELKKT-KIDPDWI-SY----STL 250 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~l 250 (510)
.++|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 166 ~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 SAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred hHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999999987664 2221 122222332221 2234 7788888888753 2223221 11 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVK 326 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 326 (510)
+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999987532 332 22335778999999999999999987643221 12345666667889
Q ss_pred cCCHHHHHHHHHHHHhccC-----------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 327 LGEFEKAENIYDEWESISG-----------TGD---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
.|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|+.+++++....+. +...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999986532 122 123456777888999999999999999987543 6778889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+...|++++|++.+++++.. .|+ ...+...+..+...|++++|..+++++.+..|.++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l----~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL----EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999963 455 6677788888999999999999999999998886544
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.7e-18 Score=174.20 Aligned_cols=393 Identities=11% Similarity=-0.017 Sum_probs=288.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...+++.++ ..|+...|..+..+|.+.|++++|++.++...+.+ |.....+..+..++...|++++|+..|..
T Consensus 144 ~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 144 NKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999998876 46778889999999999999999999999999875 67788999999999999999999988876
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHh---------------------------CCCCCC-cchHHHHHH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSE---------------------------CGFLKC-PLPYNHMLN 183 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------------~~~~p~-~~~~~~l~~ 183 (510)
+...++ +......++..+........+...++.-.. ....|+ ...+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 654422 111111111111111001111111110000 000000 001111111
Q ss_pred HH---HhCCCcCcHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 184 LY---ISNGQLDKVPQMLQELKKNT--SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257 (510)
Q Consensus 184 ~~---~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 257 (510)
.+ ...+++++|.+.|+...... .| ....++.+..++...|++++|...|++..+.. +.....|..+...+...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHC
Confidence 11 12357889999999988752 33 56788889999999999999999999988763 23466888899999999
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
|++++|...|+++.+..+. +...|..+...+...|++++|...|++...... .+...+..+..++.+.|++++|...|
T Consensus 379 g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999887544 678899999999999999999999999988532 24566778888999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT------TWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+...+.. +.+...++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9998653 3457788999999999999999999999998864321111 12222233444799999999999998
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 412 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
.. .+.+...+..+...+...|++++|...|++..+.......
T Consensus 536 ~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 536 II---DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 64 2234457888999999999999999999999887654333
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.3e-17 Score=167.66 Aligned_cols=440 Identities=12% Similarity=0.037 Sum_probs=328.1
Q ss_pred cCCCCCccHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
..+..++...-..+.....+ ..|.+.|++..+.. +-+......++..+...|+.++|+..+++.... .+......
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHH
Confidence 33446666666666666555 88999999988754 323223338888888999999999999998832 23344444
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 189 (510)
..+...+...|++++|+++|+++.+..|+ +..+..++..+...++.++|++.++++.... |+...+..++..+...+
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~ 183 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcc
Confidence 44567888999999999999999999874 7778888899999999999999999998865 66555644444444456
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HhcC
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY------STLTSLY-----IKME 258 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~l~~~~-----~~~g 258 (510)
+..+|++.++++.+..+.+...+..+..++.+.|-...|.++..+-.+. +.+....+ ..+++.- ....
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 6666999999999988778999999999999999999998877653221 11111111 1111110 0112
Q ss_pred C---hHHHHHHHHHHHHc-cCCCChh-h----HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 259 L---PEKAATTLKEMEKR-TCRKNRV-A----YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 259 ~---~~~A~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
+ .+.|+.-++.+... +..|... . ..-.+-++...++..++++.|+.+...+.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 34455555665542 2223221 2 223456778899999999999999988877677789999999999999
Q ss_pred HHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHH
Q 010458 330 FEKAENIYDEWESISG-----TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-------------KPCYT-TWELL 390 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l 390 (510)
+++|+.+|+.+..... .++......|..+|...+++++|..+++++.+..+ .||-. .+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 9999999999876432 22333357789999999999999999999987322 12222 34456
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+..+...|+..+|++.++++.. .-+-|......+...+...|.+.+|++.++......|.+..+....+.++...|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 7778899999999999999986 4566888999999999999999999999999999888899999999999999999
Q ss_pred --ChHHHHHHHHh
Q 010458 471 --MPLIIVERMQK 481 (510)
Q Consensus 471 --~a~~~~~~m~~ 481 (510)
.|..+.+...+
T Consensus 500 ~~~A~~~~~~l~~ 512 (822)
T PRK14574 500 WHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHh
Confidence 78788877765
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=3.8e-17 Score=167.67 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45566666666665 7888888888877765 355444444455556899999999999987553 444555666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
++...|+.++|...++...+..+ .+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887542 22223333333444569999999999999986 4567888899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
|+..+++++.. .+.+...+..+..++...|++++|...+++..+..|.++..+..+..++...|+ +|...+++..
T Consensus 628 A~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999963 334566778888899999999999999999999999899999999999999999 8888899887
Q ss_pred hC
Q 010458 481 KD 482 (510)
Q Consensus 481 ~~ 482 (510)
+.
T Consensus 705 ~l 706 (987)
T PRK09782 705 DD 706 (987)
T ss_pred hc
Confidence 54
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=3e-17 Score=168.48 Aligned_cols=413 Identities=11% Similarity=0.037 Sum_probs=262.2
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...|+..++.. |-+..++..+...|.+.|++++|+..+++..+.+ |.+...+..+ . ..+++++|..++++
T Consensus 61 ~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a---~i~~~~kA~~~ye~ 133 (987)
T PRK09782 61 ATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-A---AIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-H---HhccChhHHHHHHH
Confidence 77888888877765 4457778888888888888888888888888764 3333333333 2 22777788888887
Q ss_pred cccCCCC-hhhHHHH----------------------------------------HHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 133 LPDKMRG-PDTCSAL----------------------------------------LHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
+....|+ ..++..+ ...|.+.|++++|++++.++.+.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 7776654 3333333 3334444455555555555544431
Q ss_pred CCCcchHHHHHHHHHh-CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHH--
Q 010458 172 LKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID-PDWISY-- 247 (510)
Q Consensus 172 ~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-- 247 (510)
. +..-...|..+|.. .++ +++..+++. ..+.+...+..+...+.+.|+.++|.+++.++...... |...+|
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 1 22223334444444 233 333333221 11235566667777788888888888888886432211 222222
Q ss_pred H----------------------------HHHH-----------------------------------------------
Q 010458 248 S----------------------------TLTS----------------------------------------------- 252 (510)
Q Consensus 248 ~----------------------------~l~~----------------------------------------------- 252 (510)
+ .++.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 0 0001
Q ss_pred ----------------HHHhcCChHHHHHHHHHHHHc-c-C---------------------------------------
Q 010458 253 ----------------LYIKMELPEKAATTLKEMEKR-T-C--------------------------------------- 275 (510)
Q Consensus 253 ----------------~~~~~g~~~~A~~~~~~~~~~-~-~--------------------------------------- 275 (510)
...+.|+.++|.++|+..... + -
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 112234455555555443331 0 0
Q ss_pred -----------------------CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 276 -----------------------RK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 276 -----------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
++ +...|..+..++.. +++++|...+.+.... .|+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 11 22334444444444 5566677766666553 34443333344455678999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.++. +...+..+.......|++++|...++++
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999887643 344445666777888899999999999998876422 3333334444455669999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA 488 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~ 488 (510)
++. .|+...+..+..++.+.|++++|...+++.....|.++..++.+..++...|+ +|+..+++..+. .|+.
T Consensus 603 L~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~ 676 (987)
T PRK09782 603 LNI----APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDD 676 (987)
T ss_pred HHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 854 67888999999999999999999999999999999999999999999999999 899999988764 4554
Q ss_pred H
Q 010458 489 E 489 (510)
Q Consensus 489 ~ 489 (510)
.
T Consensus 677 ~ 677 (987)
T PRK09782 677 P 677 (987)
T ss_pred H
Confidence 4
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.8e-16 Score=153.03 Aligned_cols=406 Identities=15% Similarity=0.078 Sum_probs=201.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCSAL 146 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l 146 (510)
++...+.|...+.-.|+++.++.+...+..... -+.-...|..+.+++-..|++++|..+|....+..++ ...+-.+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 444455555555555555555555444443210 0112233445555555555555555555544444333 2233344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC----CcCcHHHHHHHHHhCCCCChhH-----------
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG----QLDKVPQMLQELKKNTSPDVVT----------- 211 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~----------- 211 (510)
...+.+.|+.+.+...|+.+.+.. +-+..+...|...|...+ ..++|..++.+..+..+.|...
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 455555555555555555544432 112233333333333332 2233333333333333334444
Q ss_pred ---------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHH
Q 010458 212 ---------------------------YNLWLAACASQNDKETAEKAFLELKKT---KIDPDW------ISYSTLTSLYI 255 (510)
Q Consensus 212 ---------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l~~~~~ 255 (510)
.|.+...+...|++..|...|...... ...++. .+--.+..++-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 444444444445555555444443322 011111 11112333333
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (510)
..++.+.|.+.|..+.+..+. -+..|.-++......++..+|...++..... ...++..++.+...+.+..++..|.+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhccccc
Confidence 334444444444444443111 1222222222222234444555555554433 12233334444445555555555555
Q ss_pred HHHHHHhcc-CCCCcchHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 336 IYDEWESIS-GTGDPRVPNILLAAYIN------------RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 336 ~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
-|..+.+.- ..+|+.+.-.|...|.. .+..++|+++|.+.++..+. |...-+-+.-.++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 444443321 12344444445554432 23567777777777776543 66666777777788888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
|..+|.+..+. ..-...+|..+.++|..+|++-.|+++|+...+.... ++.+...|.+++.+.|. ++...+..
T Consensus 665 A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 665 ARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888887764 2234567777788888888888888888776554443 67778888888888887 66655555
Q ss_pred HHhC
Q 010458 479 MQKD 482 (510)
Q Consensus 479 m~~~ 482 (510)
....
T Consensus 742 a~~~ 745 (1018)
T KOG2002|consen 742 ARHL 745 (1018)
T ss_pred HHHh
Confidence 5443
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.7e-17 Score=146.73 Aligned_cols=417 Identities=14% Similarity=0.043 Sum_probs=283.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhccChHHHHHHHHHHHHccCccc-Ch----hhHHHHHHHHHHhcChhhH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELN-RIVRELRKLKRYKHALEVCEWMELQYDIKL-VS----GDYAVHLDLISKIRGLSSA 126 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g~~~~A 126 (510)
.+|...++..++...-|+.-.+. -+...+.+.+.+.+|+.+|+..... +|. +- ...+.+...+.+.|+++.|
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhh
Confidence 56666666666665556554432 3345667778888899988887765 221 11 2344455566788999999
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH--------HHHHHH---------HHhCC
Q 010458 127 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY--------NHMLNL---------YISNG 189 (510)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~~~---------~~~~g 189 (510)
+.-|+...+..|+-.+-..|+-++..-|+-++..+.|.+|......||..-| ..|+.- .-+.+
T Consensus 296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 9999999888888655444555555678999999999999865433333222 122211 11111
Q ss_pred --CcCcHHHHHHHHHhC-CCCChhH---H------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 190 --QLDKVPQMLQELKKN-TSPDVVT---Y------------------NLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245 (510)
Q Consensus 190 --~~~~a~~~~~~~~~~-~~~~~~~---~------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 245 (510)
+.++++-.-.++..- ..|+-.. | -.-..-+.+.|+++.|.++++-+.+..-..-..
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 112222222222211 1221100 0 011234778889998888887765433211111
Q ss_pred HHHHH------------------------------------HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 246 SYSTL------------------------------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 246 ~~~~l------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.-+.| .+.....|++++|.+.|++.......... ..-.+.-.+
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-alfniglt~ 534 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-ALFNIGLTA 534 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-HHHHhcccH
Confidence 11111 01112357899999999999876333222 222334456
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-..|+.++|++.|-++... ...+..+...+...|....+..+|++++.+... -++.|+.+...|...|-+.|+-..|.
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhh
Confidence 7789999999999888664 334667788888899999999999999988764 34668889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 010458 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL-EEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 448 (510)
+.+-+-.+. ++.+..+...|...|....-+++++.+|+++. -+.|+..-|..++..| .+.|++..|..+++.+.
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 887665554 45688899999999999999999999999987 5799999998888665 56899999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHH
Q 010458 449 NAGHVSTEIYNSLLRTYAKAGK-MPLIIVERM 479 (510)
Q Consensus 449 ~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~m 479 (510)
+.-|.+.+....|++.+...|- ++.++-+++
T Consensus 688 rkfpedldclkflvri~~dlgl~d~key~~kl 719 (840)
T KOG2003|consen 688 RKFPEDLDCLKFLVRIAGDLGLKDAKEYADKL 719 (840)
T ss_pred HhCccchHHHHHHHHHhccccchhHHHHHHHH
Confidence 9988899999999999999887 554444433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.9e-15 Score=133.06 Aligned_cols=437 Identities=13% Similarity=0.110 Sum_probs=300.1
Q ss_pred HHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---ccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 43 RRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRK---LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 43 ~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+++..+.++ .++--+++.|.+.|++.+...-..|++..+- ..-+-.-++-|-.|...+ ..+..+|
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 3444555555 7777788888888888877765555543332 222212223333344333 1122222
Q ss_pred HHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
+.|.+. .-+|+..++ .+.++..+|.++++--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..++
T Consensus 191 -K~G~vA--dL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~L 260 (625)
T KOG4422|consen 191 -KSGAVA--DLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKL 260 (625)
T ss_pred -ccccHH--HHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHH
Confidence 224333 334454443 578999999999999999999999999998888889999999997755332 2788
Q ss_pred HHHHHhC-CCCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 010458 198 LQELKKN-TSPDVVTYNLWLAACASQNDKET----AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEME 271 (510)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 271 (510)
+.+|... ..||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 8999887 89999999999999999998765 56778889999999999999999999999988855 455555555
Q ss_pred Hc----cCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCh---hhHHHHHHHHHhcCCHHHHHHH
Q 010458 272 KR----TCRK----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF----AKMND---AEYTCVISSLVKLGEFEKAENI 336 (510)
Q Consensus 272 ~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 336 (510)
.. .++| |...|..-+..|.+..+.+-|.++..-+.... +.|+. .-|..+..+.|.....+.....
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2222 44557777888889999998988877654321 22332 2367778888899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----
Q 010458 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QM--------EK----- 402 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~----- 402 (510)
|+.|.-.-+-|+..+...++++....|.++-..+++..++..|...+...-.-++..+++.+ ++ ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 99999777778888999999999999999999999999998886656665555555555544 11 11
Q ss_pred HHHHH---HHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHH---HHHHHHHHcCC--Ch
Q 010458 403 VLECF---KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH--VSTEIYN---SLLRTYAKAGK--MP 472 (510)
Q Consensus 403 a~~~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~l~~~~~~~g~--~a 472 (510)
|..++ +....++..........+.++-.+.+.|..++|.+++..+.+.+- +-....| -+++.-.+... .|
T Consensus 501 aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11111 111111112344566777788889999999999999999965543 2233455 44444444444 78
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 473 LIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 473 ~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
...++-|...+..--.---+-+..-|
T Consensus 581 ~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 581 IEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 88888887665543332334444444
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.5e-15 Score=151.31 Aligned_cols=397 Identities=11% Similarity=0.035 Sum_probs=297.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHH
Q 010458 51 AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130 (510)
Q Consensus 51 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 130 (510)
..++|...+++.... .+.+......+...+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.+
T Consensus 83 ~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 83 RDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred CcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 338888888887721 13334444455678888999999999999999985 778888888889999999999999999
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChh
Q 010458 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 210 (510)
+++.+..|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.....+...
T Consensus 160 ~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 160 TELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred HHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 9999998876666555555555677767999999999976 225667788899999999999999888765443333221
Q ss_pred HH------HHHHHHH---H--hcCC---HHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHH
Q 010458 211 TY------NLWLAAC---A--SQND---KETAEKAFLELKKT-KIDPDW-ISY----STLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 211 ~~------~~l~~~~---~--~~~~---~~~a~~~~~~m~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
-+ ...++.- . ...+ .+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11 1111111 0 1122 34455555555442 112322 222 23455778899999999999999
Q ss_pred HHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-----KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
...+.+....+-..+..+|...+++++|..+++.+..... .++......|.-++...+++++|..+++.+.+..+
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9887665566888999999999999999999999976532 12233357788899999999999999999987422
Q ss_pred -----------CCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 346 -----------TGDP---RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 346 -----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.|+. ..+..++..+...|++.+|++.++++....+. |......+...+...|.+.+|.+.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1221 12345677788999999999999999987544 88899999999999999999999997776
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 412 GSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 412 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
. +.| +..+....+.++...|++.+|..+.+.+.+..|.+..
T Consensus 478 ~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 478 S----LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred h----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 4 345 4567778888999999999999999999999887653
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.1e-16 Score=149.40 Aligned_cols=446 Identities=13% Similarity=0.120 Sum_probs=306.4
Q ss_pred HHHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHccCcccChhhHHHHHHHHH
Q 010458 42 GRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKL---KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118 (510)
Q Consensus 42 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (510)
.+..+.-+.....|...|++..+-+ |-+..++-.|...-... ..+..++..+...-..+ +.+|.+.+.+...+.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFY 281 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHh
Confidence 3444444455589999999988865 33455554444433333 45667888888887765 789999999999999
Q ss_pred HhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhCCCcC
Q 010458 119 KIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLD 192 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 192 (510)
..|+++.+..+.+.+..... -...|-.+..+|...|++++|...|.+..+.. |+.. .+--|...+.+.|+++
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHH
Confidence 99999999999888876532 25678899999999999999999998888765 5543 3455788999999999
Q ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQN----DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+...|+.+....+.+..+..++...|...+ ..+.|..++.+..+.- +.|...|-.+...+-.. ++..++..|.
T Consensus 360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~ 437 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYG 437 (1018)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 9999999999988888899999988888775 4566777777765543 44666776665555443 3444466655
Q ss_pred HHH----HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCh------hhHHHHHHHHHhcCCHHHHHH
Q 010458 269 EME----KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMND------AEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 269 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~ 335 (510)
.+. ..+-.+.+...|.+...+...|++++|...|+..... ...++. .+-..+....-..++.+.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 443 3344466777888888888888888888888777654 112222 122223334444455555555
Q ss_pred HHHHHHhccC---------------------------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 010458 336 IYDEWESISG---------------------------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-GIK 381 (510)
Q Consensus 336 ~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 381 (510)
.|..+.+..+ ..++..+..+...+.+...+..|..-|....+. ...
T Consensus 518 ~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 518 MYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 5555554321 223334444444555555555555544443331 112
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 382 PCYTTWELLTWGYLK------------KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 382 p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+|..+...|.+.|.+ .+..++|+++|.++++ ..+-|...-+.+.-+++..|++.+|..+|.+..+
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 455555555554432 2457789999999886 4456777888889999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC-CCCHHHHHHHHhh
Q 010458 450 AGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV-QMDAETQKVLKIT 497 (510)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~-~pd~~t~~~l~~~ 497 (510)
.......+|-.+..+|..+|+ .|+++|+...+.-. .-++.....|-++
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 877677899999999999999 99999998766444 3344445554443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.6e-13 Score=121.12 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=252.6
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC--CCChhhHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGPDTCS 144 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 144 (510)
.+.+..+|..+|.++|+....+.|.+++++..... ...+..+|+.++.+-.-... .+++.+|... .||..++|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 46677889999999999999999999999988765 57888999998877654333 5666776655 58999999
Q ss_pred HHHHHHHhCCCHHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc-HHHHHHHHHhC-----CC---C-Chh
Q 010458 145 ALLHSYVQNKKSAE----AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK-VPQMLQELKKN-----TS---P-DVV 210 (510)
Q Consensus 145 ~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~-----~~---~-~~~ 210 (510)
+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++... .+ | |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998865 46778889999999999999999999998887654 55556555543 22 2 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTK----IDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.|...+..|.+..|.+.|.++..-+.... +.|+. .-|..+....|+....+.....|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 78888899999999999988876654321 22331 235667778888889999999999998887788888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR- 362 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 362 (510)
.++++....+.++-.-++|.++...|....... -++++..+.+..+.|+...-..+-....++
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999998887654332222 223334444333344322111111111111
Q ss_pred CCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 010458 363 NQL-EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 363 g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 439 (510)
-++ +.....-.++.... ......+.++-.+.+.|..++|.++|....+.-.. ..|.......+++.-...+....
T Consensus 502 ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 011 11112222334332 34455666666677777777777777777544111 22333334455556666677777
Q ss_pred HHHHHHHHHhCCCCCHH-HHHHHHHHH
Q 010458 440 AEHLLVTLRNAGHVSTE-IYNSLLRTY 465 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~~-~~~~l~~~~ 465 (510)
|..+++-+...+.+.-+ .-+.+...|
T Consensus 580 A~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 77777777666665333 333343333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.6e-12 Score=120.84 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=211.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+|+.-.+.|.+.+.++-|..+|....+.- +-+...|......=-..|..++...+|++.....+.....|-....-+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 344444455555555666666665555532 1233344444444444455555555666555554445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..||+..|..++.+..+.. +.+...|-.-+..-.....++.|..+|.+.... .|+...|.--+...--.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 5666666666666655543 224555656666666666666666666666553 4455555555555555566666666
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
++++..+. .+.-...|..+.+.+-+.++++.|.+.|..-.+.. +..+..|-.|...=-+.|++-.|..++++..-+++
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 66666553 22123445566666666666666666666554332 33444566666666666777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---------------------------CCCCCCHHHHHHHHHHHHH
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV---------------------------RKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~p~~~~~~~l~~~~~~ 433 (510)
. +...|-..|+.-.+.|+.+.|..+..++++.. +...-|+.+...+...+..
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 4 66777777777777888777777777666531 1223356677778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 434 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
..+++.|++.|.+..+.++..-++|..+...+.+.|. ...+++.....
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8999999999999999999988999999999999997 55667776654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=1.3e-13 Score=132.57 Aligned_cols=369 Identities=16% Similarity=0.133 Sum_probs=270.8
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQN 153 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 153 (510)
-.....+...|+.++|.+++.++.+.. |..+..|..+..+|-..|+.+++...+-.+....| |...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 334444455599999999999999885 78889999999999999999999998877766655 578899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC-ChhH----HHHHHHHHHhcCCHHHH
Q 010458 154 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVT----YNLWLAACASQNDKETA 228 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~----~~~l~~~~~~~~~~~~a 228 (510)
|++++|.-.|.+..+... ++...+---+..|-+.|+...|.+.|.++....+| |..- --.++..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998752 24444445567788899999999999999888555 3222 23345667777777888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC---------------------------CCChh
Q 010458 229 EKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---------------------------RKNRV 280 (510)
Q Consensus 229 ~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 280 (510)
.+.++..... +-..+...++.++..+.+...++.|......+..... .++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 8888886552 2234556788888999999999999888887776211 11222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (510)
. -.++-++...+..+....+..........| +...|.-+..++...|++..|..+|..+.......+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 122233344444444444555555554333 3456888999999999999999999999876555667789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCCCCHHHHHHHHHHHH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV------RKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~p~~~~~~~l~~~~~ 432 (510)
|...|..++|.+.|+..+...+. +...-..|...+.+.|+.++|.+.+..+..-. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999999986432 45566677788889999999999998854210 135566666667777788
Q ss_pred HcCCHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLR 448 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~ 448 (510)
+.|+.++-..+..+|.
T Consensus 538 ~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 538 QVGKREEFINTASTLV 553 (895)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 8888877655555444
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=5.1e-15 Score=131.30 Aligned_cols=417 Identities=14% Similarity=0.095 Sum_probs=280.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC------hhhHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG------PDTCSAL 146 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l 146 (510)
.+.-|...|..+....+|+..|+-+.+..-+|.....-..+...+.+.+.+.+|+++++.....-|+ ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445556666677888999999988876545444444456778888999999999999887766443 3456667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CC------------CChhHHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TS------------PDVVTYN 213 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~------------~~~~~~~ 213 (510)
...+.+.|.++.|+.-|+...+.. |+..+-..|+-++...|+.++..+.|.+|... .. |+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 777889999999999999988765 88776666666777789999999999998754 22 2222222
Q ss_pred HHH-----HHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH---H------------------HHHHHHHHhcCChHHHHH
Q 010458 214 LWL-----AACASQND--KETAEKAFLELKKTKIDPDWIS---Y------------------STLTSLYIKMELPEKAAT 265 (510)
Q Consensus 214 ~l~-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~~A~~ 265 (510)
..+ .-.-+.+. .+.++-.--++...-+.|+-.. | -.-..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 222 22222221 1222211122222222332111 1 012346889999999999
Q ss_pred HHHHHHHccCCCChhhHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHHhc
Q 010458 266 TLKEMEKRTCRKNRVAYSSLL------------------------------------SLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
+++-..+..-+.-...-+.|- +.....|++++|.+.|++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 998776652221111111111 11123467888888888877653
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010458 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 389 (510)
.......|+. .-.+-..|+.++|++.|-++... ...+..+...+...|-...+...|++++.+.... ++.|+...+.
T Consensus 521 asc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 3322233433 33456778888888888765431 1335666677778888888888888888777665 4457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-c
Q 010458 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-A 468 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 468 (510)
|...|-+.|+-..|.+++-.-.+ -++.+..+...|..-|....-++.|+..|++..-.. ++..-|..++..|.+ .
T Consensus 598 l~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHhc
Confidence 89999999998888887766553 567788898889888998888999999999876543 355668777766655 5
Q ss_pred CC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 469 GK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 469 g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
|+ +|..+++..-. .++-|..++.+|.+.|.
T Consensus 674 gnyqka~d~yk~~hr-kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred ccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence 66 89988888754 57888899999999884
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.7e-12 Score=116.11 Aligned_cols=416 Identities=10% Similarity=0.051 Sum_probs=314.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
..|.++|++.+.-. .-+...|-..+..-.++.....|..+++..... +|--...|...+-+--..|++..|.++|+.
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 67888888877655 557778888888888999999999999998875 343444555666666677999999999999
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC---Ch
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DV 209 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~ 209 (510)
-.+-.|+...|++.|..=.+-+.++.|..+|++..-. .|++.+|.-..+.=.+.|....+..+|+...+.... +.
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 9998999999999999999999999999999998864 489999988888888999999999999988776222 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHHHccCCCCh
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATT--------LKEMEKRTCRKNR 279 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~ 279 (510)
..+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.....+. |+.+...++. |-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-Cc
Confidence 566777776677888899999998877652 222 33455555444455665444332 3455555444 77
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh-------hHHHHHHHH---HhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSL---VKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
.+|--.++.-...|+.+...++|+.+... ++|-.. .|..+=-+| ....|.+.+.++|+..++ -++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 78888888888889999999999999876 555321 222222222 346889999999999886 334455
Q ss_pred chHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 350 RVPNILL----AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 350 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
.|+..+- ..-.++.++..|.+++...+. ..|-..+|...|..-.+.++++.+..++++.++- -+-+..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~---~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF---SPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc---ChHhhHHHH
Confidence 5555433 334577889999999888774 4788889999999889999999999999999863 344667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.....-...|+.+.|..+|+-+.+.... +...|.+.|+--...|. .|..+++++...
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8887778889999999999998877654 45678888888888888 889999988753
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=4.4e-14 Score=133.82 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=158.5
Q ss_pred hcChhhHHHHHHhcccCCCChhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhCCCcCcHHH
Q 010458 120 IRGLSSAENFFENLPDKMRGPDTCSAL-LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN--HMLNLYISNGQLDKVPQ 196 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~ 196 (510)
.|++++|++.+....+..+++..+..+ .....+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777777777665554344444333 344467788888888887777643 4443222 23556677777777777
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
.++++.+..+.+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777777666677777777777777777777777777777665432211 122222222333334444444444
Q ss_pred HHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
+.+. .+.++.....+...+...|+.++|.+.+++..+. .++... .++.+....++.+++.+..+...+.. +.|+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 4332 1224555555666666666666666666555542 222211 11222233455556666655555433 2244
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666665554 4555555555556666666666666665554
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1.4e-12 Score=125.71 Aligned_cols=426 Identities=11% Similarity=0.077 Sum_probs=294.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.+|.+++.+.++.. +.+...|..|...|-+.|+.++++..+-.+-..+ |.+...|..+.....+.|.+++|.-+|.+
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999998876 7788899999999999999999998876665543 77889999999999999999999999999
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH----HHHHHHhCCCcCcHHHHHHHHHhC--C
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH----MLNLYISNGQLDKVPQMLQELKKN--T 205 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~--~ 205 (510)
+.+..|+ ...+-.-+..|-+.|+...|.+-|.++.+...+.|..-+.. .++.+...++-+.|++.++..... .
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 9998664 45555667789999999999999999998764223333333 345566777778899998887764 4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHHHHHhcCC
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY--------------------------STLTSLYIKMEL 259 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------------------~~l~~~~~~~g~ 259 (510)
..+...+++++..+.+...++.+......+.....++|..-| --++-++.+.+.
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~ 392 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE 392 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc
Confidence 446778889999999999999999888887662222222222 012334444444
Q ss_pred hHHHHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 260 PEKAATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 260 ~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
.+....+.....+.. +.-+...|.-+..+|...|++.+|+.++..+......-+...|..+..+|...|.++.|.+.|
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 444445555555554 333456778888888888888888888888877654445567888888888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK--------GIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
..++... +.+...--.|...+-+.|+.++|.+.+..+... +..|+..........+.+.|+.++-+.....
T Consensus 473 ~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 473 EKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888643 224444556677778888888888888875422 1233333333344455556665554333332
Q ss_pred Hhhc-------------------------------------------------------------cCCCCCC--HHHHHH
Q 010458 410 AIGS-------------------------------------------------------------VRKWVPD--HRLITA 426 (510)
Q Consensus 410 ~~~~-------------------------------------------------------------~~~~~p~--~~~~~~ 426 (510)
++.. ..++.-+ ...+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 2221 0000000 123456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHV--STE----IYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
++.++.+.|++++|..+...+...... +.. .-...+.+.+..++ .|...+..|...
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 677888999999999999888776543 332 33445555556666 778888877643
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.8e-13 Score=121.61 Aligned_cols=393 Identities=13% Similarity=0.042 Sum_probs=256.6
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhC
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQN 153 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 153 (510)
-....-|.++|++++|+++|.+..+.. |..+..|.....+|...|++++..+.-.+..+..|+ ...+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 344566788999999999999999864 333788889999999999999999888888887765 56666677777778
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhCCCcCcHHHHHHH-HHhC---CCCChhHHHHHHHH----------
Q 010458 154 KKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN---TSPDVVTYNLWLAA---------- 218 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~---~~~~~~~~~~l~~~---------- 218 (510)
|++++|+.=..-..-. |+. +..+--.+=+.+-+. |.+..++ +.+. ..|+.....+....
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 8887775433222111 111 111110000111000 0111111 1111 11222111111111
Q ss_pred -------------HHh--c---CCHHHHHHHHHHHHh---CCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 219 -------------CAS--Q---NDKETAEKAFLELKK---TKIDPD---------WISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 219 -------------~~~--~---~~~~~a~~~~~~m~~---~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
+.. . ..+..+.+.+.+-.. .....+ ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 100 0 123333333333111 000111 1122222233455788899999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
..+...+. +...|--+..+|....+.++.++.|.+..+.+.. +..+|..-.+...-.++++.|..=|++.++..+. +
T Consensus 351 ~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~ 427 (606)
T KOG0547|consen 351 AAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N 427 (606)
T ss_pred HHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence 99887555 3333777888889999999999999998876433 5677888888888889999999999998865422 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----CCCCHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-----WVPDHRL 423 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~p~~~~ 423 (510)
+..|-.+..+.-+.+++++++..|++..++ ++..+..|+.....+...+++++|.+.|+.+++.-+. +.+.+.+
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 666666777777888999999999999887 3446778999999999999999999999999864110 1122333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
...++..-. .+++..|.+++.+..+.+|.....|.+|...-.+.|+ +|+++|++-.
T Consensus 507 ~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334443333 3899999999999999999888899999999999999 8999998754
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=4.6e-14 Score=134.49 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=147.8
Q ss_pred HHhcChhhHHHHHHhcccCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhCCCcCcH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDT-CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 194 (510)
...|+++.|.+.+.+..+..|++.. +-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777776666555433 3444566667777777777777766543 4433 233346666677777777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHHHHH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS-TLTS---LYIKMELPEKAATTLKEM 270 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~~ 270 (510)
...++.+.+..+.+..+...+...+...|+++++.+.+..+.+.++. +...+. .-.. .....+..++..+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777766556677777777777777777777777777766533 222221 1111 112222222223333333
Q ss_pred HHccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--H-HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 271 EKRTCR---KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--Y-TCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 271 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
.+..+. .+...+..+...+...|+.++|.+.+++..+.. |+... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333211 245555666666666666666666666665532 22211 0 111111122344444444444444322
Q ss_pred CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 345 GTGDP--RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 345 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 3333444444555555555555553222122344444444555555555555555555444
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2e-16 Score=143.19 Aligned_cols=259 Identities=16% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (510)
...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.++++....+.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444444444444443322221 111222333333333444444444444444444332233344444443 344445
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|+..+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55544444433221 233334444444445555555555555444321 122344444444455555555555555555
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
..+..+. +......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|++..+.+. .|.
T Consensus 172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~ 248 (280)
T PF13429_consen 172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDP 248 (280)
T ss_dssp HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-H
T ss_pred HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-ccc
Confidence 5443111 23334444444444555555444444444322 23344444555555555555555555555544321 144
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.....+..++...|+.++|.++.+++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554443
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.4e-13 Score=128.80 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=215.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHH-HHHHHHHhCCCcCcHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYN-HMLNLYISNGQLDKVPQMLQELKKNTSPDV-VTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 230 (510)
.|++++|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+..+.+. .........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766643 2233333 334455789999999999999977533332 222234678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 446778888999999999999999999999988665322 123333444444555666777777
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
.+... .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++....+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 66443 3346677888899999999999999999998863 344422 2344445668999999999999887433 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
...+..+...+.+.+++++|.+.|+++.+ ..|+...+..+..++.+.|+.++|.+++++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788889999999999999999999995 4799999999999999999999999999987553
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.4e-14 Score=135.04 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=202.3
Q ss_pred ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 86 RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
+.++|+..|..+.++ ++...++...++.+|...+++++|+++|+.+.+..| +.++|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567788888886554 355667777888888888888888888888877754 46777777765532 22222
Q ss_pred HH-HHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LM-EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
.+ +++.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+..+....+|+.+..=+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22 3333332 23667888888888888888888888888877766677888888888888888888888887765432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
+.+-..|.-+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.|+|+++++++...... |...-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 112333445677788888888888888888887665 6667777777888888888888888887765333 33333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+..+...+++++|+..++++.+.- +.+...+..+...|.+.|+.+.|..-|.-+.+..+++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 556667788888888888877542 33556677778888888888888888777777655443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.2e-11 Score=115.10 Aligned_cols=412 Identities=12% Similarity=-0.005 Sum_probs=297.4
Q ss_pred HHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC
Q 010458 43 RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122 (510)
Q Consensus 43 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 122 (510)
+......-...+|.-++.+.++. ++-+...|. +|.+..-++.|..+++..++. +|.++..|..-...--..|+
T Consensus 383 WKaAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCC
Confidence 33333333334566666666553 344545443 445556677888888888775 57778888777777777888
Q ss_pred hhhHHHHHHhcccC----C--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCCcCcH
Q 010458 123 LSSAENFFENLPDK----M--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 123 ~~~A~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 194 (510)
.+...+++.+.... | .+...|..=...|-..|..-.+..+.......|+.-. ..||+.-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 88777777654322 2 2456677777777788888888888888777775432 34778888888888888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 274 (510)
..+|....+..+-+...|......--..|..+....+|++.... ++-....|-....-+-..|++..|..++.+..+..
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 88888888877777888888877777788888888888888765 34455667677777778889999999888888876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHH
Q 010458 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
+. +...|-.-+.....+.++++|..+|.+... ..|+...|..-+...-..++.++|.+++++.++. ++.-...|..
T Consensus 615 pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lm 690 (913)
T KOG0495|consen 615 PN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLM 690 (913)
T ss_pred CC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 55 777888888888888889999998888766 5667777777777777788888898888887753 2333556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
+...+-+.++++.|...|..-.+. ++-....|-.+...--+.|++-+|..++++..- .-+.+...|...|+.-.+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl---kNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL---KNPKNALLWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh---cCCCcchhHHHHHHHHHHc
Confidence 888888888888888877765554 222445666666666777888889889988876 3455677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
|+.+.|..++.++.+..|.+-..|..-|....+.++
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 999888888888877665555555555554444433
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=2.5e-16 Score=142.58 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=64.7
Q ss_pred HHHHHHhcChhhHHHHHHhc-ccC-CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 114 LDLISKIRGLSSAENFFENL-PDK-MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
...+...|++++|.++++.. ... +| ++..|..+.......++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44444444445554444322 121 12 2333344444444445555555555554443322 23334444443 34445
Q ss_pred cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010458 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
+++|.+++...-+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 93 ~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544443322 1233334444445555555555555555543221 223444455555555555555555555555
Q ss_pred HHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
..+..+. |......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|..+|++..+.. +.|+
T Consensus 172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 5554322 34445555555555555555555555544432 2233344445555555555555555555554432 2244
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRL 375 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 375 (510)
.....+..++...|+.++|..+.+++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44555555555555555555555443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.6e-12 Score=113.22 Aligned_cols=293 Identities=14% Similarity=0.122 Sum_probs=174.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCC
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS---PDVVTYNLWLAACASQND 224 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 224 (510)
.++......+++..-.+...+.|++.+...-+....+.....++++|+.+|+++.+..+ .|..+|+.++-+-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444455666666666666666654444444444445566677777777777776622 255666665543222111
Q ss_pred HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 225 KE-TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 225 ~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
.. .|..+++ + . +--+.|.-.+.+.|.-.++.++|...|+...+.++. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 1 1 112245555666677777777777777777776554 55667777777777777777777777
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
.+.+-+ +.|-..|..+.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 776642 2255667777777777777777777777776543 3466777777777777777777777777777654 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRK-WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...+..+...|-+.++..+|..+|.+.++. ..| ..| .......|..-+.+.+++++|.........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 566777777777777777777777766652 011 222 122333345555666666666655444433
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.7e-14 Score=134.47 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=233.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
.+|...|+. ....+.-+.+....+.++|...+++++|.++|+.+.+... ...+.+.|...+..+-+.-.+. -+-+
T Consensus 336 ~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~Laq 411 (638)
T KOG1126|consen 336 REALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLAQ 411 (638)
T ss_pred HHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHHH
Confidence 899999999 5555566667778999999999999999999999998642 1235567777766653322221 1223
Q ss_pred hcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh
Q 010458 132 NLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 132 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 209 (510)
.+.+..| .|.+|.++..+|.-+++.+.|++.|++..+.+ | ...+|+.+..-+.....+|.|...|+......+.+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 3344444 48999999999999999999999999999876 4 778999999999999999999999999987766677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.+|.-+.-.|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|+.+|++.....+. |+..--..+..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il 567 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASIL 567 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHH
Confidence 778888999999999999999999998875 345566667788899999999999999999988766 777777788888
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|..-|..+.+..+++.
T Consensus 568 ~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999999999999999988 45554 6788889999999999999999999887654443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=4.9e-13 Score=127.44 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=209.6
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLP-YNHMLNLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 228 (510)
...|+++.|.+.+.+..+.. |++.. +-....++.+.|+.+.|.+.+.+..+..+.+ ....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998887754 55443 3444677788899999999999987653322 23444457888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS-SLLSLY---TNMGYKDEVLRIWKK 304 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 304 (510)
...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998875 446677889999999999999999999999988655 333332 111221 223333334445555
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 305 MMSLFAK---MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 305 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
+...... .+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5543221 2667788888899999999999999999987543322111 11222223345778888888888887632
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 381 KPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 381 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
. |. ....++...+.+.|++++|.+.|+.+... ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~--~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC--KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33 55668889999999999999999953332 4579998899999999999999999999998643
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.4e-12 Score=111.21 Aligned_cols=221 Identities=13% Similarity=0.141 Sum_probs=96.8
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C--HHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-D--WISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+.++|.+.|-+|.+..+.+..+--+|.+.|.+.|..|.|+++.+.+.++.--+ + ....-.|..-|...|-+|.|+.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444333333333444444444444444444444443321000 0 01112233444444555555555
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+... -|.-+...+....+.+.|..++.+..+
T Consensus 130 f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 5554443211 23334444555555555555555555444433322221 133333333344455555555555554
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+.+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++.++.+
T Consensus 209 a~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3322 33333344445555555555555555555544333334445555555555555555555555554
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.5e-12 Score=111.02 Aligned_cols=288 Identities=14% Similarity=0.079 Sum_probs=170.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC---ChhHHHHHHHHHHhcCCHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP---DVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a 228 (510)
..+.++|.++|-+|.+... -+..+.-+|.+.|-+.|..|+|+.+.+.+.+. .-+ -..+...|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3455666666666665321 13334445556666666666666666665554 111 122334455566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
+.+|..+.+.| .--......|+..|....+|++|+++-+++.+.+..+.. ..|-.+...+....+.+.|...+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766544 223445566777777777777777777777766544332 2344455555556677777777777
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+.++.+... ..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 7664322 22333445566677777777777777777765554455667777777777777777777777776533 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRN 449 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 449 (510)
..-..+...-....-.+.|..++.+-+.. +|+...+..++..-.. .|..++...+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333444334444556666666655543 6777777777765433 3445566666666654
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=7.2e-12 Score=110.27 Aligned_cols=284 Identities=12% Similarity=0.057 Sum_probs=146.5
Q ss_pred hcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 198 (510)
.|++.+|++...+..+.++. ...|..-+.+.-+.|+.+.+-+++.+..+....++...+-+..+.....|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46666666666665555443 23444455556666666666666666666432344444555556666666666666666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.++.+..+.+........++|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 66666655566666666666666666666666666666665433322 23334433333333333333444333
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
.. .+.++..-..++.-+...|+.++|.++.++..+.+..|. ...+ -.+.+.++...-++..++..+.. +.++..
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 32 222334444445555555555555555555555444333 1111 12334444444444444444322 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555555555555555555544443 4455555555555555555555555555544
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.6e-10 Score=103.87 Aligned_cols=403 Identities=10% Similarity=0.043 Sum_probs=305.5
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
.+...|-....--..++++..|..+|+.....+ .-+...|...+.+-.+...+..|..+|+.+...-|. ...|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344455555555556778888999999998764 446667778888889999999999999998887665 35666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
..=-..|++..|.++|++-.+. .|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|-.....-.+.|+...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHH
Confidence 6666789999999999998876 499999999999999999999999999998654 5899999999999999999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC-hhhHHHHHHHHHhcCCHHHHHHH---
Q 010458 228 AEKAFLELKKT-KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRI--- 301 (510)
Q Consensus 228 a~~~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~--- 301 (510)
+..+|....+. |- ..+...+.+....-.++..++.|.-+|+-..+.-+... ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999987653 11 11233455555555667889999999998888733311 34555555554556665443332
Q ss_pred -----HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc--hHHHH--------HHHHHhcCCHH
Q 010458 302 -----WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNIL--------LAAYINRNQLE 366 (510)
Q Consensus 302 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l--------~~~~~~~g~~~ 366 (510)
++.+.+. .+.|-.+|--.+..-...|+.+...++|+..+. +++|-.. .|.-. +..=....+++
T Consensus 306 KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344443 233566777788888888999999999999985 4444221 12111 11223567899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 367 MAESFYNRLVTKGIKPCYTTWEL----LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 367 ~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.++|+..++. ++-...||.- ....-.++.++..|.+++..++ |.-|...+|...|..-.+.++++....
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999884 2223445443 3444557889999999999999 778999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC
Q 010458 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN 483 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~ 483 (510)
++++..+-+|.+-.+|......-...|+ .|..+|+-..+.+
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999988899988888888898 8889999887643
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.2e-11 Score=108.83 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
.|++.+|++...+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++....-+..+.....||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888777766332 233444556666778888888888877766 556667777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
++++.+.+ +.+.........+|.+.|++.....++.++.+.|.-.|. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 345566777778888888888888888888887765443 2456666666555555555556665
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
.... .+.++..-.+++.-+..+|+.++|.++..+..+.+..|+ . .....+.+-++.+.-.+..++-.+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 444555666666677777777777777777776665554 1 11223345566666666666555432 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
..+..+...|.+.+.+.+|...|+.+. ...|+..+|..+.+++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl----~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL----KLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH----hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666777777777777777777777776 447777777777777777777777777777665
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.3e-11 Score=109.23 Aligned_cols=432 Identities=11% Similarity=0.047 Sum_probs=303.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
..|.-+-++.... .-++..--.+...+.-.|+++.|..+...-.-. ..+..........+.+..++++|..++..
T Consensus 33 ~~a~f~adkV~~l--~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 33 KTALFWADKVAGL--TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred hHHHHHHHHHHhc--cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444444433 345555556677777788888888777654332 34677777888888999999999999883
Q ss_pred cccC----C-----------CCh-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 133 LPDK----M-----------RGP-----------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 133 ~~~~----~-----------~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
.... . ++. ..+-.-...|....++++|...|.+....++. ....+..++....
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHM 186 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHh
Confidence 2111 0 010 00111112455566778888888877764322 2223333333322
Q ss_pred hCC------------------CcCcHHHHHHHH----HhC-------------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 187 SNG------------------QLDKVPQMLQEL----KKN-------------TSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 187 ~~g------------------~~~~a~~~~~~~----~~~-------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
-.- +.+....+|+-. ... ...+.........-|...+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 111 001111122211 000 111344445555667788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
++...+.. ++....+..-|.++...|+..+-..+=.++.+..+. ...+|-++.--|...|+..+|..+|.+.... .
T Consensus 267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~l--D 342 (611)
T KOG1173|consen 267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTL--D 342 (611)
T ss_pred hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--C
Confidence 99987764 556666777778999999999888888889887544 7889999999999999999999999998664 3
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 312 MN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 312 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
|. ...|-.+...++-.|.-++|...+....+.-.. ....+--+.--|.+.++.+.|.++|.+.....+ .|+...+-+
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~El 420 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHEL 420 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhh
Confidence 33 357888899999999999999999887763211 222233455667889999999999999987643 366778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVP----DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
.......+.+.+|..+|+..+...+.+.+ ...+++.|..+|.+.+++++|+..+++.....+.+..++.++...|.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 77778889999999999998843222222 45678999999999999999999999999999999999999999999
Q ss_pred HcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 467 KAGK--MPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 467 ~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
..|+ .|...|++.. .+.||..+...+++-+
T Consensus 501 llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999 8999999875 5789987777777644
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.8e-10 Score=103.32 Aligned_cols=375 Identities=17% Similarity=0.113 Sum_probs=251.6
Q ss_pred cChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH---HH
Q 010458 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN---HM 181 (510)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~l 181 (510)
.|+..+...+..+.+.|..+.|++.|....... |..|.+-+....-..+.+.+ ..+.. |.+.| .+|. .+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~-~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELITDIEIL----SILVV-GLPSD-MHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhchHHHH----HHHHh-cCccc-chHHHHHHH
Confidence 344444555566677888888888888776553 33444433332222333322 22222 11112 2221 23
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKME 258 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g 258 (510)
..++....+.+++..-.+.....+-|+ ...-+....+.....|+++|+.+|+++.+..+ --|..+|+.++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 445555667777877777777775553 33444444555678899999999999987641 125667776653 3332
Q ss_pred ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+-. +..+-+-.-.--+--+.|...+.+-|...++.++|..+|+...+.+.. ....|+.+..-|....+...|.+-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 112211111101123457778888999999999999999999885432 44678888899999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
..++.+ +.|-..|-.|.++|.-.+...-|+-+|++..+..+ -|...|..|..+|.+.++.++|++.|+++... + .
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~-d 463 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--G-D 463 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--c-c
Confidence 999766 44888999999999999999999999999998743 37889999999999999999999999999974 3 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCH---HHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHH
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHVST---EIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAE 489 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~ 489 (510)
.+...+..+...+.+.++.++|...|++..+. |..++ ..---|..-+.+.++ +|....... -.| .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~-~~~-~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV-LKG-ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH-hcC-CchHH
Confidence 46788999999999999999999999887652 23332 223335666677777 444333333 334 66667
Q ss_pred HHHHHHhhcC
Q 010458 490 TQKVLKITSE 499 (510)
Q Consensus 490 t~~~l~~~~~ 499 (510)
--+.|++-+.
T Consensus 542 eak~LlReir 551 (559)
T KOG1155|consen 542 EAKALLREIR 551 (559)
T ss_pred HHHHHHHHHH
Confidence 7777777553
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1e-12 Score=112.12 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=211.3
Q ss_pred HHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 219 CASQNDKETAEKAFLELKK---------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
|...+|+..|........+ .+...|..--+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 4456667666644433221 122233334478999999999999999999998886 55677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEY-TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
.+..++..|+.++.+-.+. .|..+|| .-....+...++.++|.++|+...+.. +.++.....+...|.-.++.+.|
T Consensus 267 ~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 9999999999999998774 4555554 556678888999999999999999765 44677777788888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+++|+++++.|+. +...|+.+.-+|...+++|-++..|.+++.. ...|+ ..+|..+.......|++..|.+.|+-
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 9999999999986 8899999999999999999999999999976 34444 56888999899999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 447 LRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
....++.+.+.+|.|.-.-.+.|+ .|..++......
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999899999999999999999 888888887653
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1.7e-11 Score=121.45 Aligned_cols=248 Identities=10% Similarity=0.020 Sum_probs=157.2
Q ss_pred ChhhHHHHHHhcccCCCC-hhhHHHHHHHHH---------hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 122 GLSSAENFFENLPDKMRG-PDTCSALLHSYV---------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
.+++|..+|++..+..|+ ...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 456777777777777664 445555544433 224477888888887776522 556677777777778888
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++|...|++..+..+.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888888887776667777777888888888888888888887766432 22233334445666788888888888776
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCCc
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESIS-GTGDP 349 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 349 (510)
+...+-+...+..+..++...|++++|...++++... .|+. ...+.+...++..| +.|...++.+.+.. ..+..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 6532224455667777777888888888888776543 2332 33444445556656 36666666655421 11222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
..+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222 33344556666666655 766664
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7e-11 Score=108.50 Aligned_cols=284 Identities=12% Similarity=0.044 Sum_probs=209.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+.......+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.-.|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 4444555566777888888888888888754 456666666777888888888888888888888777888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
.-.|+..+|.++|.+....+. .=...|-.+.+.|.-.|..++|...+....+.-+. ..-.+--+.--|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHH
Confidence 888999999999888654321 12456788888888888889888888877765211 2233444555677788888899
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCC----CcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS--GTG----DPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
++|.+.... .+-|+..++-+.......+.+.+|..+|+.....- ..+ -..+++.|.++|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 988888764 22355667777666677788888888888776311 111 23357788888888899999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 374 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+.+....+ +..++.++.-.|...|+++.|++.|.+++ .+.|+..+...++..+.
T Consensus 480 ~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL----~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL----ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH----hcCCccHHHHHHHHHHH
Confidence 88876543 77888888888888899999999998888 56788777666665443
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=2e-09 Score=100.70 Aligned_cols=388 Identities=15% Similarity=0.133 Sum_probs=183.7
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
..+++...+.+.+.+.+. .|.-.++....+-.+...|+.++|....+.....++ +...|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555553 244444444444444455555555555555544433 34455555555555555555555
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-I 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~ 240 (510)
.|......+. -|...|.-+.-.-++.|+++.....-..+.+..+.....|..++.++.-.|+...|..++++..+.. -
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555554431 1333444444444455555555555555444434444555555555555555555555555554332 1
Q ss_pred CCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 010458 241 DPDWISYSTLT------SLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 241 ~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
.|+...+.-.. ....+.|.+++|.+.+..-... +. |.. .-..-...+.+.+++++|..++..+... .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 23333332211 1223344445554444443332 11 111 1122333444555555555555555542 334
Q ss_pred hhhHHHHHH-HHHhcCCH-----------------------------------HHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 314 DAEYTCVIS-SLVKLGEF-----------------------------------EKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 314 ~~~~~~l~~-~~~~~~~~-----------------------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
...|..... ++.+..+. +...+++....+.|++ .++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHH
Confidence 433332222 22111111 2222233333333322 12333333
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCC----------CCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCH
Q 010458 358 AYINRNQLEMAESFYNRLV----TKGI----------KPCYTT--WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~----~~~~----------~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 421 (510)
.|-.-...+-..++.-.+. ..|. +|.... +-.++..+-+.|+++.|..+++.++. ..|+.
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTl 404 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTL 404 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchH
Confidence 3322111111111111111 1110 233333 33456667777888888888887774 35553
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC
Q 010458 422 -RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV 484 (510)
Q Consensus 422 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~ 484 (510)
..|..=.+.+...|++++|..++++..+.+.+|..+-..-..-..++.+ +|..+.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3455556677777888888888888777766654444345555555555 67777776666654
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=7.1e-11 Score=117.09 Aligned_cols=249 Identities=12% Similarity=0.007 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIK---------MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (510)
++++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3456666676666543 1233445444444332 23366777777777666444 55666666666667777
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
+++|...++++.+.++. +...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777776664321 3345566666667777777777777776655432 222223333345556677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 375 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
+.+...+-+...+..+..++...|++++|...+.++... .|+.. ..+.+...|...| +.|...++.+.+..-.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 665432213334555666666777777777777665532 33332 3344444455555 3566655555443222
Q ss_pred CHHHHHHHHHHHHHcCC-ChHHHHHHHHhC
Q 010458 454 STEIYNSLLRTYAKAGK-MPLIIVERMQKD 482 (510)
Q Consensus 454 ~~~~~~~l~~~~~~~g~-~a~~~~~~m~~~ 482 (510)
.......+-..|.-.|+ +...+++++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 11111113333444555 444455665544
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.7e-11 Score=106.99 Aligned_cols=197 Identities=11% Similarity=-0.071 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
...+..+...+...|++++|.+.++.+.+.. |.+...+..+...+...|++++|.+.+++..+..| +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4445556666666666666666666665543 44455556666666666666666666666655543 24455555566
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+...|++++|.+.++...+....| ....+..+...+...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655432111 1223344444444555555555555554444333344444444444445555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444333 1223333334444444444444444444443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9.6e-10 Score=99.36 Aligned_cols=381 Identities=13% Similarity=0.038 Sum_probs=251.6
Q ss_pred CcHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVH-KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
++|...+...+. ..|+ +.-|.-...+|...|+|++.++......+.+ |.-...+..-..++-..|++++|+.=+.
T Consensus 132 ~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 132 DEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 899999998887 5667 7778888899999999999999998888764 4444566666777888888888754221
Q ss_pred hcccC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh-CC--CCCCcchHHHHHHHHH---------------------
Q 010458 132 NLPDK-MRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-CG--FLKCPLPYNHMLNLYI--------------------- 186 (510)
Q Consensus 132 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~p~~~~~~~l~~~~~--------------------- 186 (510)
-..-. +-+......++.-..+ ..|..-.++-.+ .+ +-|+.....+....+.
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 11100 0000011111111100 111111111111 11 1222222222221111
Q ss_pred --h--CC---CcCcHHHHHHHHHhC--CCC--C---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010458 187 --S--NG---QLDKVPQMLQELKKN--TSP--D---------VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246 (510)
Q Consensus 187 --~--~g---~~~~a~~~~~~~~~~--~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 246 (510)
. .+ .+.+|.+.+.+-... ..+ + ..+...-...+.-.|+.-.+..-|+..+.....++ ..
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence 0 01 122222222221111 111 1 12222222334557889999999999888764433 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLV 325 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 325 (510)
|--+...|....+.++.++.|.+..+.++. ++.+|..-.+.+.-.+++++|..=|++.+.. .| +...|-.+..+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHH
Confidence 777888899999999999999999998776 8889999999999999999999999999874 33 4456777777778
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HHHHHHHHhcC
Q 010458 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTW--ELLTWGYLKKG 398 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~--~~l~~~~~~~~ 398 (510)
+.+.++++...|++..+. ++..+..|+.....+...++++.|.+.|+...+.... .+..++ ..++..- =.+
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhh
Confidence 999999999999999864 4557889999999999999999999999998875322 112222 1111111 248
Q ss_pred CHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++..|..++.++.+. .|. ...|..|...-.+.|+.++|+++|++.....
T Consensus 518 d~~~a~~Ll~KA~e~----Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 518 DINQAENLLRKAIEL----DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hHHHHHHHHHHHHcc----CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999953 444 4578999999999999999999999876543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=9.3e-09 Score=96.15 Aligned_cols=432 Identities=14% Similarity=0.147 Sum_probs=280.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-----cccChhhHHHHHHHHHHhcCh---h
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-----IKLVSGDYAVHLDLISKIRGL---S 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~---~ 124 (510)
..+..++++-++ .++..-+-.|..+++.+++++|.+.+......+. .+.+...|..+.+..++.-+. -
T Consensus 155 ets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 155 ETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 567777777654 3444567778889999999999988888765421 123444555565555544322 2
Q ss_pred hHHHHHHhcccCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC--------------
Q 010458 125 SAENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN-------------- 188 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------- 188 (510)
....+++.+....+| ...|++|.+.|.+.|.+++|..+|++..+.- .+..-|+.+.++|+.-
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334456666666565 5689999999999999999999999877642 3444455555555431
Q ss_pred --CC------cCcHHHHHHHHHhC------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 010458 189 --GQ------LDKVPQMLQELKKN------------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----- 243 (510)
Q Consensus 189 --g~------~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----- 243 (510)
|+ ++-...-|+.+... .+.++..|..-... ..|+..+-...|.+..+. +.|.
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs 385 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGS 385 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCC
Confidence 11 11222333333221 23355555544443 456777777778776543 2221
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------
Q 010458 244 -WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM------- 312 (510)
Q Consensus 244 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 312 (510)
...|..+.+.|-..|+++.|..+|++..+...+-- ..+|......=.+..+++.|+++.+......-.|
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 24578889999999999999999999988643311 2355556666667888999999888875431111
Q ss_pred ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010458 313 ----------NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382 (510)
Q Consensus 313 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 382 (510)
+...|...++..-..|-++....+|+.+.+..+. ++.+.-.....+-.+.-++++.++|++-+..-.-|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 1123566666666778999999999999876543 33333333333445666888888888766654455
Q ss_pred CHH-HHHHHHHHHHh---cCCHHHHHHHHHHHhhccCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C
Q 010458 383 CYT-TWELLTWGYLK---KGQMEKVLECFKKAIGSVRKWVPDHRL--ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--S 454 (510)
Q Consensus 383 ~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 454 (510)
+.. .|+..+.-+.+ ...++.|..+|+++++ +.+|...- |......-.+.|-...|+.+++++...-.. -
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 554 67766665554 3478999999999997 66655432 222233334568899999999998765443 2
Q ss_pred HHHHHHHHHHHHHc-CC-ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 455 TEIYNSLLRTYAKA-GK-MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 455 ~~~~~~l~~~~~~~-g~-~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
..+||..|.--... |- ....+|++..+. -||...-...++..+
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 46788887665543 54 778888888775 678887777777664
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.9e-09 Score=99.74 Aligned_cols=424 Identities=12% Similarity=0.052 Sum_probs=235.2
Q ss_pred cHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 40 TLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 40 ~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+...+-+..... ++|.....++...+ +-+...+..=+-++.+.+++++|+.+.+.-... .....-+.--.-+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHH
Confidence 3444444444444 67777777766654 445556666666677778888887554432210 11111111223333
Q ss_pred HHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hCCCcCcHHH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQ 196 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 196 (510)
.+.++.|+|...++...+. +..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+ ..+....+.
T Consensus 90 Yrlnk~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred HHcccHHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHH-
Confidence 4777888888877743332 3445555566677788888888888888775422 2222222211 111111111
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------C-----CCCHH-HHHHHHHHHHhcCChHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK--------I-----DPDWI-SYSTLTSLYIKMELPEK 262 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~-----~~~~~-~~~~l~~~~~~~g~~~~ 262 (510)
+.+........+-..+......+...|++.+|+++++...+.+ . ..... .-..|.-.+...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1221111111122222223445667899999999998872211 0 00111 12235556778899999
Q ss_pred HHHHHHHHHHccCCCChhh----HHHHHHHHHhcCCHH----------------HHHHHHH-------------------
Q 010458 263 AATTLKEMEKRTCRKNRVA----YSSLLSLYTNMGYKD----------------EVLRIWK------------------- 303 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~----------------~a~~~~~------------------- 303 (510)
|..++...++..+. |... -|.|+..-....-++ .....+.
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887554 4322 122221111000000 0000000
Q ss_pred ------HHHHhcCCCC--hhhHHHHHHHHHh--cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 304 ------KMMSLFAKMN--DAEYTCVISSLVK--LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 304 ------~~~~~~~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
+... ..++. ...+..++..+.+ ......+.+++....+..+.....+.-..+......|+++.|.+++.
T Consensus 322 k~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0000 01111 2334444444332 22466777777776655433334455667778889999999999999
Q ss_pred --------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH----HHHHHcCCHHHHH
Q 010458 374 --------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY----NKLEEQGDIDGAE 441 (510)
Q Consensus 374 --------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~ 441 (510)
.+.+.+..|-.+ ..+...+.+.++-+.|..++.+++.....-.+.......++ ..-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 666655555444 45666677777766677777766653222233333333333 3345679999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCC-ChHHHHHH
Q 010458 442 HLLVTLRNAGHVSTEIYNSLLRTYAKAGK-MPLIIVER 478 (510)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~ 478 (510)
.+++++.+.++.+..+...++.+|++..- .|..+-..
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 99999999999999999999999999887 66555444
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1e-11 Score=106.16 Aligned_cols=234 Identities=16% Similarity=0.185 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..++..|+.++.+-.+.- +-|+....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999997765 5667789899999999999999999999998862 3255555668888889
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.++.++|.++|+...+. .+.+.....++...|.-.++++.|...|+.+.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999886 3346677778888888999999999999999999966 888999999999999999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 372 YNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 372 ~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
|++....--.|+ ...|-.+.......|++.-|.+.|+-++.. -.-+...++.|...-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999887543344 357888888888899999999999999973 344577899999889999999999999999998
Q ss_pred CCCC
Q 010458 450 AGHV 453 (510)
Q Consensus 450 ~~~~ 453 (510)
..|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 8775
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.1e-10 Score=103.07 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (510)
..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++...... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 44455555555566666666666655554322 344555555555566666666666665555321 1333444555555
Q ss_pred HhcCCHHHHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
...|++++|.+.++...+.... .....+..+..++...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666665542211 12234445556666666666666666666654322 344566666666667777777
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...++++.+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666652 233445555556666666777777666666544
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.4e-09 Score=104.20 Aligned_cols=293 Identities=14% Similarity=0.091 Sum_probs=167.1
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH-HHHHHHHHhC--
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-SALLHSYVQN-- 153 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~-- 153 (510)
....+...|++++|++.++.-... +......+......+.+.|+.++|...+..+.+.+|+...| ..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 345566778888888888775543 34455666677778888888888888888888887765444 4444444221
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC-cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 154 ---KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 154 ---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
.+.+...++|+++...- |...+...+.-.+.....+. .+..++..+...+.| .+|+.+-..|......+-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP--slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP--SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHcChhHHHHHH
Confidence 24566677777776654 44333333322222211222 233333444444443 34555555555444444444
Q ss_pred HHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 230 KAFLELKKT----K----------IDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 230 ~~~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+++...... + -+|+. .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 554443221 1 12333 23345566666777777777777777766332 3556666677777777
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchH--------HHHHHHHHhcCCH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--------NILLAAYINRNQL 365 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~ 365 (510)
++.+|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....+ .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777777777776664322 4455555566666777777777777776655433222111 2345566667777
Q ss_pred HHHHHHHHHHHh
Q 010458 366 EMAESFYNRLVT 377 (510)
Q Consensus 366 ~~A~~~~~~~~~ 377 (510)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777766666554
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=4.5e-10 Score=108.41 Aligned_cols=253 Identities=11% Similarity=0.095 Sum_probs=158.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 57 ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
.++-.+...|+.|+..+|.++|..||..|+.+.|- +|..|.-+. .|.....++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 45666778899999999999999999999999998 999998775 7889999999999888888877665
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH-------hCCCCCCcchH---------------HHHHHHHHhCCCcCcH
Q 010458 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMS-------ECGFLKCPLPY---------------NHMLNLYISNGQLDKV 194 (510)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~p~~~~~---------------~~l~~~~~~~g~~~~a 194 (510)
.|.+.+|+.|..+|.+.|+...-..+=+.|. ..|+. ....| ...+......|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999865222211122 12211 11111 1122222233334444
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
++++..+.......+... +++-+.... .+++-........+ .|+..+|..++++-...|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444433322211111111 233332222 22222222222222 467777777777777777777777777777777
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
|++.+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777666655555544 56666677777777777777777777766666655444
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=2.8e-08 Score=93.26 Aligned_cols=406 Identities=13% Similarity=0.065 Sum_probs=247.1
Q ss_pred cCCCCCccHHHH--HhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRR--LLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~--l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
+-+.+++.+.-. .+-+....++|......-.+. ..-+.+.|+.+.-.+....++++|+..|..+...+ +.+...+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qil 112 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQIL 112 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhcc-CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHH
Confidence 445555555422 222222337777766665553 35567777777777777778888888888877764 5566666
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCcchHHHHH------
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHML------ 182 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~------ 182 (510)
.-+.-.-+..|+++........+.+..|. ...|..++.++.-.|+...|..+++...+.. -.|+...+....
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n 192 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN 192 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 66666666777777777776666666554 5667777777777788888888877776544 245555554332
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-TSLYIKMELPE 261 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~ 261 (510)
......|.+++|++.+.............-..-...+.+.+++++|..++..+... .||...|... ..++.+-.+.-
T Consensus 193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 23345666677776666655443334444455566677778888888888887766 3555544443 33443333444
Q ss_pred HHH-HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
++. .+|....+.-+. ....-..=++......-.+..-.++..+.+.|+++ ++..+...|-.-...+-..++...+
T Consensus 271 ~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y 346 (700)
T KOG1156|consen 271 EALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSY 346 (700)
T ss_pred HHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHH
Confidence 444 555555544111 11111111222222222334555666666666654 3444444333222222112222222
Q ss_pred H----hcc----------CCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 010458 341 E----SIS----------GTGDPRV--PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 341 ~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a 403 (510)
. ..+ -+|.... +-.++..+-..|+++.|..+++..... .|+.+ .|..=.+.+...|++++|
T Consensus 347 ~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 347 QHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred HhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHH
Confidence 1 111 1344333 345778888999999999999999976 55543 555566888999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..+++++.+. -.||..+-.--..-..+.++.++|.++.....+.|.
T Consensus 425 a~~l~ea~el---D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 425 AAWLDEAQEL---DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhc---cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999999863 345555544566677889999999999999988876
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.2e-08 Score=88.75 Aligned_cols=417 Identities=11% Similarity=0.044 Sum_probs=243.4
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.-|..+++.-...+-.-...+-..+...+.+.|++++|+..+..+.... .++......+.-...-.|.+.+|..+-.+
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 5566666654432222112222334556678899999999999988765 45666777777777788999999998887
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.++. +..-..++....+.++-++-..+-+.+.+. ..---+|.......-.+.+|+++|.++.... |+-...
T Consensus 117 a~k~---pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-~ey~al 187 (557)
T KOG3785|consen 117 APKT---PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-PEYIAL 187 (557)
T ss_pred CCCC---hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhh
Confidence 6643 333334444444555554444444333321 1111223333333334556666666665442 222222
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-------------------------------
Q 010458 213 NL-WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM--E------------------------------- 258 (510)
Q Consensus 213 ~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g------------------------------- 258 (510)
|. +.-+|.+..-++-+.++++--.+. ++.+....|..+....+. |
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 22 223344555555555555544332 122223333222222221 1
Q ss_pred --ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC-------C
Q 010458 259 --LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-------E 329 (510)
Q Consensus 259 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 329 (510)
+-+.|++++-.+.+. . +..-..|+--|.+.+++.+|..+.+++.- ..|.......+. +...| .
T Consensus 267 FrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreH 338 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREH 338 (557)
T ss_pred EeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHH
Confidence 223344444433332 1 22334566667889999999988877522 223333333222 22333 3
Q ss_pred HHHHHHHHHHHHhccCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010458 330 FEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (510)
..-|.+.|+.+-+.+..-|... -.++...+.-..++++.+.+++.....-...|... -.+..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHh
Confidence 5567777777666655544332 45666777777889999999998887644434444 457889999999999999998
Q ss_pred HHhhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC
Q 010458 409 KAIGSVRKWVPDHRLI-TAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVERMQKDN 483 (510)
Q Consensus 409 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~ 483 (510)
..... .++ |..+| ..+.++|.++|+.+.|..++-++ +.+ .-.....+..-|.+.++ .|...|+.+..
T Consensus 418 ~is~~--~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-- 489 (557)
T KOG3785|consen 418 RISGP--EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-- 489 (557)
T ss_pred hhcCh--hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--
Confidence 88753 333 44455 56678899999999988776544 333 23456667788888888 78888888865
Q ss_pred CCCCHHHHHHHHhhc
Q 010458 484 VQMDAETQKVLKITS 498 (510)
Q Consensus 484 ~~pd~~t~~~l~~~~ 498 (510)
..|++..|.-=-.+|
T Consensus 490 lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 490 LDPTPENWEGKRGAC 504 (557)
T ss_pred cCCCccccCCccchH
Confidence 467777776555555
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=5.3e-08 Score=91.29 Aligned_cols=405 Identities=10% Similarity=0.062 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
..|-..+..+.++|+.......|+.....-.+..-...|...+......+-.+.+..++++..+. +|..-+-.+..++
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 45666666777788888888888877765323333445667777777777777888888888776 4455677778888
Q ss_pred hCCCHHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHhCCC---cCcHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 010458 152 QNKKSAEAEALMEKMSECG------FLKCPLPYNHMLNLYISNGQ---LDKVPQMLQELKKNTSP-DVVTYNLWLAACAS 221 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 221 (510)
..+++++|-+.+....... .+.+-..|..+....++.-+ --....+++.+....+. -...|..|...|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 8888888888887765321 12344556666666655433 23445555555544222 34568888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHccC----
Q 010458 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----------------E------LPEKAATTLKEMEKRTC---- 275 (510)
Q Consensus 222 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~~---- 275 (510)
.|.++.|.++|++....- .+..-|..+.+.|+.- | +++-.+..|+.+...++
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 888888888888865542 2333333333333321 1 22333444444443311
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 276 -------RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 276 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+.++..|..-+. ...|+..+....|.++.+. +.|.. ..|..+.+.|-..|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 112333333222 2345566666667666654 33322 2366667777777777777777777665
Q ss_pred ccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHH
Q 010458 343 ISGTGD---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK----------P-------CYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 343 ~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~ 402 (510)
...+-- ..+|..-...=.++.+++.|.++.+.....--. | +...|...+..--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 332211 123333334444556666677666655432000 0 11234444444444556666
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHc-C-C---ChHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS--TEIYNSLLRTYAKA-G-K---MPLII 475 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g-~---~a~~~ 475 (510)
...+|+++++. .+ .++.+.......+..+.-++++.+++++-...-+.+ .+.|+..+..+.+. | . .|..+
T Consensus 496 tk~vYdriidL--ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 496 TKAVYDRIIDL--RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHH--hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666666653 21 122222222223344444555555555544433321 24455544444432 1 1 45555
Q ss_pred HHHHHhCCCCCC
Q 010458 476 VERMQKDNVQMD 487 (510)
Q Consensus 476 ~~~m~~~~~~pd 487 (510)
|++..+ |++|.
T Consensus 573 FEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 573 FEQALD-GCPPE 583 (835)
T ss_pred HHHHHh-cCCHH
Confidence 555554 44444
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-08 Score=95.80 Aligned_cols=411 Identities=15% Similarity=0.024 Sum_probs=273.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC--
Q 010458 60 RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM-- 137 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 137 (510)
.+++.....-++..|..+.-++...|+++.+.+.|++.... .-.....|..+...+...|.-..|..+++......
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33333345668888999999999999999999999987654 23456778888888889999999999998876665
Q ss_pred C-ChhhHHHHHHHHH-hCCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhCC-----------CcCcHHHHHHH
Q 010458 138 R-GPDTCSALLHSYV-QNKKSAEAEALMEKMSEC--GF--LKCPLPYNHMLNLYISNG-----------QLDKVPQMLQE 200 (510)
Q Consensus 138 ~-~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~ 200 (510)
| ++..+-..-..|. +.+..+++++.-.+.... +. ...+..|..+.-+|...- ...++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3444444444454 346677777666665541 11 123444555555554321 13467778888
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChh
Q 010458 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280 (510)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 280 (510)
..+..+.|+.+...+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+.-.. |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 8777555665555566667788999999999999888766778889999999999999999999999877665111 221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------cC-----CC--ChhhHHHHHHHHHhcCCHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSL---------------------FA-----KM--NDAEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-----~~--~~~~~~~l~~~~~~~~~~~~ 332 (510)
....-+..-...++.+++......+... |. .| ...++..+.......+....
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1112222223355666655544443221 00 00 01112222111110000000
Q ss_pred HHHHHHHHHhccCCCCc--------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 333 AENIYDEWESISGTGDP--------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
-... +......|.. ..|......+.+.++.++|...+.+..... .-....|......+...|+..+|.
T Consensus 629 se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHH
Confidence 0000 1111112221 234556677888899999998888888753 335566777777888899999999
Q ss_pred HHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 405 ECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEH--LLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
+.|..+.. +.|+ +....++..++.+.|+..-|.. ++.++.+.++.+.+.|..+...+-+.|+ .|.+.|...
T Consensus 705 ~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 705 EAFLVALA----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999985 3554 5678899999999999888888 9999999999999999999999999999 777888776
Q ss_pred Hh
Q 010458 480 QK 481 (510)
Q Consensus 480 ~~ 481 (510)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 54
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=1.8e-09 Score=103.58 Aligned_cols=280 Identities=13% Similarity=0.071 Sum_probs=167.7
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-----ChhhHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-----GLSSAE 127 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~ 127 (510)
.+|.+.|+.-.. .+......+......+.+.|+.++|..++..+.+.+ |.+..-|..+..+..-.. ..+...
T Consensus 21 ~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 21 EEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 666666655222 223333445666777777888888888888887775 444444444444442222 455666
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhCCCHH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--
Q 010458 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSA-EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-- 204 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 204 (510)
++++.+....|.......+.-.+.....+. .+...+..+..+|+++ +|+.|-..|....+.+-..+++......
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhc
Confidence 777777666555444433332233323333 3444556666666543 4555555555444444444455444322
Q ss_pred -------------CCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 205 -------------TSPDV--VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 205 -------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+|.. .++..+...|-..|++++|++++++.++.. |+ +..|..-.+.+-+.|++.+|.+.++
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 12333 344556677777888888888888777663 43 5667777777788888888888888
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--------YTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
.....+.. |...=+.....+.+.|++++|.+++......+..|.... ......+|.+.|++..|++-|..+
T Consensus 253 ~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 253 EARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 87776555 666666677777778888888888777766554332211 133456677777777777777766
Q ss_pred H
Q 010458 341 E 341 (510)
Q Consensus 341 ~ 341 (510)
.
T Consensus 332 ~ 332 (517)
T PF12569_consen 332 L 332 (517)
T ss_pred H
Confidence 5
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.4e-08 Score=88.66 Aligned_cols=299 Identities=13% Similarity=0.077 Sum_probs=220.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
.++...|...+-.+.... ++-|......+...+...|+.++|...|++..-..+-+........-.+.+.|+++....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 445445544444333322 3446677888999999999999999999998766555555555556666788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
...+.... ..+...|-.-+......+++..|+.+-++.++.... +...|-.-...+...+++++|.-.|+..+.. -+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML-AP 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-ch
Confidence 77775432 234444555555667788899999999998887544 5666766678888999999999999998764 22
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010458 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAYI-NRNQLEMAESFYNRLVTKGIKPCY-TTWE 388 (510)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 388 (510)
-+...|.-++.+|...|.+.+|.-+-+...+. .+.+..+...+. ..+. .-.--++|..++++.+.. .|+. ..-+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 35688999999999999999988777766542 233455554442 2222 112347888888887775 4543 3556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 461 (510)
.+...+...|..++++.++++.+. ..||....+.|.+.+...+.+++|.+.|....+.+|.+..+..-|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 777888899999999999999994 489999999999999999999999999999999999876555443
No 72
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=94.06 Aligned_cols=405 Identities=14% Similarity=0.083 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...|-+-+.-. ++|...|+-=..+|.+.|++++|++=-.+-.+.+ |.-+..|...+.++.-.|++++|+..|.+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 77777777776655 4477778888888888899888887777766654 55667888888888888999999999888
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHH---HHHHHHHHhC---CCCCCcchHHHHHHHHHhCC-------CcCcHHHHH
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEA---EALMEKMSEC---GFLKCPLPYNHMLNLYISNG-------QLDKVPQML 198 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g-------~~~~a~~~~ 198 (510)
-.+..|+ ...++.+.+++.......+. -.++..+... ........|..++..+-+.- +.+...+..
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 8887764 56777777776211000000 0011111100 00001112222222211100 000000000
Q ss_pred HHHHh----------------CCCC------------C----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 199 QELKK----------------NTSP------------D----------VVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 199 ~~~~~----------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
-.+.. ...| | ..-...+.++..+..+++.+.+-+....+..
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~- 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA- 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-
Confidence 00000 0000 0 1124556677777788888888888877654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS-------LLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
.+..-++....+|...|.+.++...-+...+.|.. ...-|+. +..+|.+.++++.++.+|.+.......|+
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH
Confidence 45555667777788888877777777766665443 2233333 33455556777888888887665544433
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
. ..+....+++........-.+ |.. .-...-...+.+.|++..|+..|.+++..++. |...|....-
T Consensus 333 ~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAa 400 (539)
T KOG0548|consen 333 L---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAA 400 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 2 223334444444444333222 221 11122366778899999999999999988643 7788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCC-
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-AGK- 470 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~- 470 (510)
+|.+.|.+..|++-.+..++. -++....|..=..++....+++.|.+.|++..+.++.+.+....+.++... .|+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC
Confidence 999999999999998888863 233455666666677777899999999999999998776666666555554 334
Q ss_pred ChHHHHHH
Q 010458 471 MPLIIVER 478 (510)
Q Consensus 471 ~a~~~~~~ 478 (510)
...++.++
T Consensus 478 ~~ee~~~r 485 (539)
T KOG0548|consen 478 TPEETKRR 485 (539)
T ss_pred CHHHHHHh
Confidence 44444444
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.7e-09 Score=92.46 Aligned_cols=269 Identities=9% Similarity=-0.007 Sum_probs=116.5
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++.+......+.+.+...|+.++|+..|++....+|. ........-.+.+.|+++....+...+.... .-+...|-.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3444444555555555555555555555555444332 1111111222334455554444444443321 0122223333
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
.......++++.|+.+-++..+..+.+...|-.-...+...++.++|.-.|+...... +-+...|.-|+++|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 3333344445555555555444444444444444444555555555555555543321 223445555555555555555
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLL-SLYTN-MGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+|.-.-+...+. .+.+..+.+.+. ..+.- ..--++|.+++++... ..|+- ...+.+...|...|..+++..+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 554444433332 111333333331 11111 1122444455444433 22322 223334444444555555555555
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
..... .||....+.|.+.+...+.+++|...|...++.
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44421 344455555555555555555555555555443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=3e-09 Score=87.10 Aligned_cols=198 Identities=9% Similarity=-0.070 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
+...|.-.|.+.|++..|..-+++..+.+ |.+..++..+...|.+.|..+.|.+.|++..+..| +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45566677888888888888888888875 67777888888888888888888888888887766 4677888888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
..|++++|...|+.......-| -..+|..+.-+..+.|+.+.|.+.|++..+..+....+.-.+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888877642211 245677777777788888888888888877766667777777788888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
+++.....+. ++....-..|..-...|+.+.+.+.=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888776664 77777767777777788887777766666654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.1e-09 Score=103.60 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----c-CCC-
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKK-----TKID--PDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRK- 277 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~- 277 (510)
++.++..+...+++++|..+++...+ .|.. .-..+++.|...|.+.|++++|.++++++... | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44455556666666666666655321 1110 12345667777777777777777777766554 1 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK-MN-DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
....++.+...|.+.+++++|.++|.+...- |+. |+ ..+|..|...|...|++++|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1345666777777777777666666654321 211 12 2457777777777777777777776655
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=4.6e-08 Score=85.11 Aligned_cols=378 Identities=13% Similarity=0.071 Sum_probs=245.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.+|..+++.+..+. .++...+--|.-.+.-.|.+.+|..+-... |.++-.-..++...-+.|+-++-..+.+.
T Consensus 74 ~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 74 EEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888888877755 455555555555556678899998877654 34555556666666777877777666666
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH-HHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML-NLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+.+. ..--.+|.+..--.-.+.+|+++|.+....+ |+-...|..+ -+|.+..-++-+.+++....+..+.++.+
T Consensus 147 LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 147 LQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred Hhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 5543 2333445555445567889999999988765 5666666544 44567777888888888887776666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------------CCCC-----HHHHHHHHHHHHhcCCh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTK--------------------------IDPD-----WISYSTLTSLYIKMELP 260 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------------~~~~-----~~~~~~l~~~~~~~g~~ 260 (510)
.|..+....+.=+-..|++-.+.+.+.+ +-|. +..--.|+-.|.+.+++
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 6666554444322222222222221111 0011 11223456678899999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-------KDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 332 (510)
.+|..+.+++.-. ++.-|-.-.-.++..|+ ..-|.+.|+..-..+..-|. ..-.++...+.-..++++
T Consensus 302 qeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 302 QEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999887766421 22222222222333333 44466666655444444443 235666777777889999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
++-.+..+...-...|...+| +..+++..|++.+|+++|-.+....++ |..+| ..+.++|.+.++++-|++++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888655454555554 788999999999999999888766555 55555 456688999999999999887764
Q ss_pred hccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 412 GSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 412 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
. +.+. .....+..-|.+.+.+--|-+.|+.+...+|.
T Consensus 456 t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 456 T-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred C-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 2 2222 34456667899999999999999999888774
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=2.1e-09 Score=97.64 Aligned_cols=94 Identities=6% Similarity=-0.159 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHh
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQ 152 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 152 (510)
|..+...+.+.|++++|...|+...+.. |.++..|..+...+...|++++|...|+...+..|+ ..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555543 445555555555555555555555555555555443 4445555555555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010458 153 NKKSAEAEALMEKMSEC 169 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~ 169 (510)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555543
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.5e-09 Score=102.68 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHc-----cCC
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKT-----K-IDPDWIS-YSTLTSLYIKMELPEKAATTLKEMEKR-----TCR 276 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 276 (510)
..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556778888888888888888775442 2 1233222 344777888899999999999888664 222
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCC-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---c
Q 010458 277 -K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FAKM-ND-AEYTCVISSLVKLGEFEKAENIYDEWESI---S 344 (510)
Q Consensus 277 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 344 (510)
| -..+++.|..+|.+.|++++|..+++.+..- +..+ .. ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1346777888899999998888887776442 1111 11 23667777888889999999888876542 1
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 345 GTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK----GI--KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 345 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
+.++ ..+++.|...|...|++++|.+++++.+.. +. .+ ....++.|...|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 346888999999999999999999987652 11 11 2346788888898899988888888876643
Q ss_pred cCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 414 VRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 414 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
...+.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2122232 4578889999999999999999888765
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.3e-11 Score=78.36 Aligned_cols=49 Identities=35% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=6.9e-09 Score=85.00 Aligned_cols=199 Identities=16% Similarity=0.024 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+...|.-.|...|+...|..-+++.++.+.. +..+|..+...|.+.|+.+.|.+.|++..+..+.+..+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 34556667777788888888888887776522 45577777777778888888888888877776667777788888888
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
..|.+++|...|++..... ...-..+|..+.-+..+.|+.+.|...|++..+..+. ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888887765432 2222456777777777888888888888877776544 4556667777777778888888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
.+++.....+. ++..+.-..|..-...||.+.+.+.=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88777766654 6666776677777777777777666555543
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=8.9e-10 Score=106.41 Aligned_cols=253 Identities=12% Similarity=0.128 Sum_probs=140.7
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|+-. .+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666677777777777777777777777666 66666655 3336666666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHH----ccCCCChhhHH--------------HHHHHHHhcCCHHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEK---AATTLKEMEK----RTCRKNRVAYS--------------SLLSLYTNMGYKDEVL 299 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~ 299 (510)
.|...||..|..+|...||+.. +.+.+..+.. .|+......+- ..+.-....|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776543 2221111111 12210011110 1111122223333333
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+++..+-..... ..+..+++-+.. +..-.+++........-.|++.+|..++.+-...|+++.|..++.+|.+.|
T Consensus 160 kll~~~Pvsa~~---~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN---APFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccccc---chHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322111000 011112322222 222333343333332225777778888887777888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
+..+..-|..++.+ .++..-+..+++-|.+. |+.|+..|+...+..+.++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHHHHhhhcchh
Confidence 77777777777665 66666777777777776 788888887777666666554
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=3.7e-08 Score=93.01 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCC---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRK---WV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
....++...|+.+.|...++.+...... .. ...........++...|+.++|.+.+.+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777776653111 00 01122223333456788888888888777653
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.7e-11 Score=77.79 Aligned_cols=50 Identities=40% Similarity=0.527 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 207 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.5e-08 Score=92.15 Aligned_cols=200 Identities=13% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISS 323 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 323 (510)
..|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|...|+...+. .|+ ...+..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555666666666666666666665433 4556666666666666666666666666553 232 3445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|.+.++...+.. |+..........+...++.++|...|++..... .|+...+ . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence 666666666666666665433 221111111112233455666666665544321 1221111 1 112223333322
Q ss_pred HHHHHHHhhccC-C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 404 LECFKKAIGSVR-K--WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 404 ~~~~~~~~~~~~-~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+.+..+.+... . +.| ....|..+...+.+.|++++|...|++..+.++++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23333332100 0 111 23456666777777777777777777777666653
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=7.9e-08 Score=90.79 Aligned_cols=304 Identities=10% Similarity=-0.015 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCC---C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMR---G-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
+..|..+...+...|+.+.+.+.+.......+ + ..........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 33444444444444555554444444332221 1 1111122233445566666666666655543 112222221 1
Q ss_pred HHHHh----CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 183 NLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 183 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
..+.. .+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 12222 2333333333333111122233444455556666777777777777766653 233455666666777777
Q ss_pred ChHHHHHHHHHHHHccCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhH-H--HHHHHHHhcCCHH
Q 010458 259 LPEKAATTLKEMEKRTCR-KNR--VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEY-T--CVISSLVKLGEFE 331 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~--~l~~~~~~~~~~~ 331 (510)
++++|...+++....... |+. ..|..+...+...|++++|..++++.......+.. ... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 777777777766654221 121 23445666666777777777777766432211111 111 1 1122222233222
Q ss_pred HHHHH--HHHHHhccCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCC
Q 010458 332 KAENI--YDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP--------CYTTWELLTWGYLKKGQ 399 (510)
Q Consensus 332 ~a~~~--~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~ 399 (510)
.+..+ +..............+ .....++...|+.+.|...++.+......+ ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111111101111112 245556667778888888887776522110 11122223344567888
Q ss_pred HHHHHHHHHHHhhc
Q 010458 400 MEKVLECFKKAIGS 413 (510)
Q Consensus 400 ~~~a~~~~~~~~~~ 413 (510)
.++|.+.+..++..
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887753
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=2e-07 Score=80.90 Aligned_cols=314 Identities=11% Similarity=0.003 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh-hhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 151 (510)
-..-+.+.+...|++..|+.-|....+-+ |.+-.++..-...|...|+...|+.-+..+.+..||- ..--.-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 34456677888899999999999887643 4444445555678888999999999898888886662 22333445678
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
+.|.+++|..-|+.+.+.. |+..+- ..++.+.-..++- ......+..+...||...|+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~---------------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH---------------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH---------------HHHHHHHHHHhcCCchhhHHHH
Confidence 8999999999999998865 432221 1111111000000 1111122233445555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
...+.+.. +-|...|..-..+|...|++..|+.-++...+..-. +..++..+-..+...|+.+.++...++..+ ..
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 55555542 234444555555555555555555555554443222 344444455555555555555555555544 23
Q ss_pred CChhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 312 MNDAE----YTCV---------ISSLVKLGEFEKAENIYDEWESISGTGDPRV---PNILLAAYINRNQLEMAESFYNRL 375 (510)
Q Consensus 312 ~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 375 (510)
||... |..+ +......++|.++.+-.+...+..+...... +..+-.++...|++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 33321 1111 1123345677777777777766544422222 334445666677888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 376 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
++... .|..++.--..+|.-...++.|+.-|+++.+.
T Consensus 334 L~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 334 LDIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77532 24667777777888788888888888888753
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=5.6e-07 Score=96.17 Aligned_cols=268 Identities=10% Similarity=0.083 Sum_probs=113.0
Q ss_pred HHhCCCcCcHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 010458 185 YISNGQLDKVPQMLQELKKNTS-PD----VVTYNLWLAACASQNDKETAEKAFLELKKT----KI-DPDWISYSTLTSLY 254 (510)
Q Consensus 185 ~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~ 254 (510)
+...|++++|...+++.....+ .+ ....+.+...+...|++++|...+.+.... |. .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3445556666665555544211 11 122334444455556666666555554321 10 00112233344455
Q ss_pred HhcCChHHHHHHHHHHHHc----cCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCC--hhhHHHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN--DAEYTCVISS 323 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 323 (510)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 5556666666555554432 110 0 11123333444445566666655555543321 0111 1122333344
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCC-cchH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGD-PRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGY 394 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~ 394 (510)
+...|+++.|...++.......... ...+ ...+..+...|+.+.|..++............. .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4555666666555555533110000 0000 001122333555555555554433321111100 022344445
Q ss_pred HhcCCHHHHHHHHHHHhhccCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRK--WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
...|++++|...+.++...... ..+ ...+...+..++.+.|+.++|...+.+..+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 5556666666666655542101 111 112344444555556666666666666655543
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=2.3e-07 Score=89.05 Aligned_cols=389 Identities=10% Similarity=-0.052 Sum_probs=261.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH-HhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS-KIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 131 (510)
..+.+.|++... +..-....|+.+...+...|.-..|+.+++.-.....-|+++..+......|. +.+.+++++++-.
T Consensus 340 ~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 340 EVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred HHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 667777777554 33446677999999999999999999999887665433556666766666665 4577788777777
Q ss_pred hcccC--C----CChhhHHHHHHHHHhC-----------CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 132 NLPDK--M----RGPDTCSALLHSYVQN-----------KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 132 ~~~~~--~----~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
++... + ..+..|..+.-+|... ....++++.+++..+.+.. |+.+.-.+.--|+..++.+.|
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHH
Confidence 66652 1 2356666666655432 2345778888888877643 555555555667788899999
Q ss_pred HHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
.+..++..+. ...+...|..+.-++...+++.+|+.+.+...+. |. |......-++.-..-++.++++.....+..
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999888 6678999999999999999999999999886443 21 111122223333345666666655544432
Q ss_pred c---------------------c-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--Ch------hh
Q 010458 273 R---------------------T-------CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--ND------AE 316 (510)
Q Consensus 273 ~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~------~~ 316 (510)
. | ..-...++..+..-....+........ +......| +. ..
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHH
Confidence 1 0 000111222111111100000000000 11111112 21 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
|......+.+.++.++|.-.+.+..+.. +-....|......+...|+.++|.+.|......++. ++.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 5556677888899999988888877543 345667777888888999999999999999886533 55678889999999
Q ss_pred cCCHHHHHH--HHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 397 KGQMEKVLE--CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 397 ~~~~~~a~~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.|+..-|.. ++..+++. -+-+...|..+...+.+.|+.++|.+.|....+....
T Consensus 731 ~G~~~la~~~~~L~dalr~---dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRL---DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hCCcchHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999888887 99999963 3457889999999999999999999999999887765
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.5e-07 Score=78.79 Aligned_cols=297 Identities=11% Similarity=0.029 Sum_probs=184.2
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHH-H
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA-L 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l 146 (510)
....-.+.+.+..+.+..++..|++++..-.++. |.+......+..+|-...++..|...++++....|...-|.. -
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3333346677777788888899999888877764 456677778888888888899999999888877776544432 3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL--YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
...+-+.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.... .+..+.+.......+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecccc
Confidence 45566778888888888877653 222222222222 23467788888887776532 244555555566678889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-------------Chh--------hHH
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-------------NRV--------AYS 283 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~ 283 (510)
++.|.+-|+...+.+--.....|+. .-+..+.|+.+.|++...++.++|++. |+. .-.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999998888766543334456664 445667888899999888888876531 111 111
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 284 SLL-------SLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 284 ~l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.++ ..+.+.++++.|.+.+-.|.-. ....|+.|...+.-. --.+++.+...-+.-+.+.++- ...|+..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 222 2334566666666666655321 123344554433211 1234455555555555554432 34566667
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 010458 356 LAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~ 374 (510)
+-.||+..-++.|-.++.+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 7777777767766666544
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.8e-06 Score=77.87 Aligned_cols=161 Identities=13% Similarity=0.060 Sum_probs=108.6
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCCcc
Q 010458 281 AYSSLLSLYTN--MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD--------EWESISGTGDPR 350 (510)
Q Consensus 281 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~ 350 (510)
.+.+++..+.+ ...+..+..++...-+....-...+.-..+......|+++.|.+++. .+.+.+. .+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Chh
Confidence 34444444332 22466677777766554322223456667778889999999999999 4444333 345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTK--GIKPCYT----TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 424 (510)
+...+...+.+.++.+.|..++.+.... .-.+... ++.-....-.+.|+-++|..++++..+ -.++|..+.
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k---~n~~d~~~l 495 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK---FNPNDTDLL 495 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH---hCCchHHHH
Confidence 6667788888888877788887776642 1112223 333344445567999999999999997 457889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 010458 425 TAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
..++.+|++. +.+.|..+-+.+
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999987 688888777655
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=1.3e-06 Score=76.03 Aligned_cols=325 Identities=11% Similarity=0.014 Sum_probs=227.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH-HHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHM 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 181 (510)
+.+..-..-+...+...|++..|+.-|....+.+|+. .++-.-...|...|+...|+.-+....+. +||...- ..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445556667788888899999999999988885542 23333445677888888888888888875 3664321 223
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
...+.+.|.+++|..=|+.+.+..+.+.. ...+..+.-..++-. .....+..+...|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 34567888888888888888776332211 111111111111111 1223455567789999
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
.|+.....+.+..+- |...|..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999987544 88899999999999999999998888876653 2345666677778889999999999988887
Q ss_pred hccCCCCcch----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 010458 342 SISGTGDPRV----PNIL---------LAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 342 ~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~ 405 (510)
+. .||... |..+ +......+++.++..-.+...+..+..... .+..+-.++...+++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 64 344322 2111 223455678888888888888764432223 33445567777899999999
Q ss_pred HHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 406 CFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
...+.++ +.|+ +.++.--..+|.-...++.|+.-|+...+.+..+..+-
T Consensus 329 qC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 329 QCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999985 3555 88888888999999999999999999999887765443
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=2e-06 Score=92.04 Aligned_cols=413 Identities=12% Similarity=0.021 Sum_probs=237.4
Q ss_pred CCcHHHHHHHHHHcCCC--C-C----HHHHHHHHHHHHhcc----ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHh
Q 010458 52 KRSAAITMRKWKEEGHT--V-H----KYELNRIVRELRKLK----RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120 (510)
Q Consensus 52 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (510)
.+++.++++.+.+.|.- + + .+.|+-++..+.+.. ..++... .+......+...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~----------------lh~raa~~~~~~ 354 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPE----------------LHRAAAEAWLAQ 354 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHH----------------HHHHHHHHHHHC
Confidence 36678888888887752 1 1 123455555444321 1222222 222334445566
Q ss_pred cChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
|++.+|............-..........+...|+++.+..+++.+.......++.........+...|+++++..++..
T Consensus 355 g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 355 GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77766666555543221111222223344556777777777776653211112333334445555677888888888877
Q ss_pred HHhCCC-------CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 010458 201 LKKNTS-------PD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTL 267 (510)
Q Consensus 201 ~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 267 (510)
...... +. ......+...+...|+++.|...+++..+.-...+. ...+.+...+...|++++|...+
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~ 514 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM 514 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654311 11 122233344556788898888888886553111121 23456667778889999888888
Q ss_pred HHHHHc----cC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCC--C-ChhhHHHHHHHHHhcCCHHHHHH
Q 010458 268 KEMEKR----TC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK--M-NDAEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 268 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 335 (510)
++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|..
T Consensus 515 ~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 515 QQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 877643 11 111235566677788889999888888776542 211 1 12334455566777799998888
Q ss_pred HHHHHHhcc--CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHH
Q 010458 336 IYDEWESIS--GTG--DPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYT--TW--ELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 336 ~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~ 405 (510)
.+++..... ..+ ....+..+...+...|+.+.|...+++..... ...... .. ...+..+...|+.+.|..
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 888765421 111 23334456667778889888888888775421 111111 11 112244455788888888
Q ss_pred HHHHHhhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--CHHHHHHHHHHHHHcCC--ChHH
Q 010458 406 CFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHV--STEIYNSLLRTYAKAGK--MPLI 474 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~--~a~~ 474 (510)
++...... ..... ...+..+..++...|++++|...+++.... +.. ...+...+..++.+.|+ .|..
T Consensus 675 ~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 675 WLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776542 11111 112456777788888898888888877653 222 23567777788888888 7777
Q ss_pred HHHHHHhC
Q 010458 475 IVERMQKD 482 (510)
Q Consensus 475 ~~~~m~~~ 482 (510)
.+.+..+.
T Consensus 753 ~L~~Al~l 760 (903)
T PRK04841 753 VLLEALKL 760 (903)
T ss_pred HHHHHHHH
Confidence 77766543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.8e-07 Score=81.48 Aligned_cols=400 Identities=12% Similarity=-0.023 Sum_probs=250.0
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 156 (510)
-.+.+..|+++.|+..|.+..... |++...|..-..++...|++++|.+=-.+-.+..|+ +..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678899999999999998875 668888889999999999999998887777777776 78999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc---CcHHHHHHHHHhC----CCCChhHHHHHHHHHHhc-------
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL---DKVPQMLQELKKN----TSPDVVTYNLWLAACASQ------- 222 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~------- 222 (510)
++|+..|.+-++... -+...++-+..++...... -.--.++..+... .......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999999888652 2445566666666211000 0000111111111 000112233333222111
Q ss_pred ---CCHHHHHHHHHHH-----HhC-------CCCC------------C----------HHHHHHHHHHHHhcCChHHHHH
Q 010458 223 ---NDKETAEKAFLEL-----KKT-------KIDP------------D----------WISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 223 ---~~~~~a~~~~~~m-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
..+..+...+... ... +..| | ..-...+.+...+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0011111111100 000 0111 0 0113456777777788888888
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH-------HHHHHHHHhcCCHHHHHHHHH
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-------TCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 338 (510)
-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-| ..+..++.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888887764 35666677777888888877777666665554422 11122 223345556677888888888
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
+.......|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|+..|.+++.. .+
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P 389 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DP 389 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CC
Confidence 76654333322 233444555555555444433221 112223366788999999999999999974 35
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHh
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKI 496 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~ 496 (510)
-|...|....-+|.+.|.+..|+.-.+...+.++.....|..=..++....+ .|++.|.+-.+. .|+..-+.--++
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5778899999999999999999999999999988766666555555544444 677777776553 355554444444
Q ss_pred hc
Q 010458 497 TS 498 (510)
Q Consensus 497 ~~ 498 (510)
-|
T Consensus 468 rc 469 (539)
T KOG0548|consen 468 RC 469 (539)
T ss_pred HH
Confidence 33
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=9.9e-09 Score=91.78 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++..+.++.++.+...++......|+
T Consensus 183 ~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 183 YQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp CCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 4444444444433 3334444444444444444444444444444444444444444444444444444
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=2.1e-05 Score=72.93 Aligned_cols=406 Identities=13% Similarity=0.088 Sum_probs=247.9
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.|-|..+|+.||+-+..+ ..+++.+.++++... +|.++..|..-+......++++..+.+|.+....-.+...|...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 477999999999987666 999999999999875 68899999999999999999999999999987766677888777
Q ss_pred HHHHHh-CCCHHH----HHHHHHHH-HhCCCCCC-cchHHHHHHHHH---------hCCCcCcHHHHHHHHHhCCCCCh-
Q 010458 147 LHSYVQ-NKKSAE----AEALMEKM-SECGFLKC-PLPYNHMLNLYI---------SNGQLDKVPQMLQELKKNTSPDV- 209 (510)
Q Consensus 147 ~~~~~~-~~~~~~----A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~- 209 (510)
++--.+ .|+... ..+.|+-. .+.|+.+- ...|+..+..+- ...+.+...++|+++....-.+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764332 233222 23334433 34453332 234555554332 23355667777777765411121
Q ss_pred ------hHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcC-
Q 010458 210 ------VTYNLWLAAC-------ASQNDKETAEKAFLELKK--TKIDPDWIS---------------YSTLTSLYIKME- 258 (510)
Q Consensus 210 ------~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~l~~~~~~~g- 258 (510)
..|..=|+.. -+..++..|.+++++... .|+.....+ |..+|..=...+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222222211 223456777777777532 232211111 333333211111
Q ss_pred -----Ch--HHHHHHHHHHHH-ccCCCChhhHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCChhhHH
Q 010458 259 -----LP--EKAATTLKEMEK-RTCRKNRVAYS-----SLLSLYTNMGY-------KDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 259 -----~~--~~A~~~~~~~~~-~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
.. ....-++++... .+..|+..... ..-+.+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 111222333222 23333332211 11122333333 345566666555432222333344
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010458 319 CVISSLVKL---GEFEKAENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWG 393 (510)
Q Consensus 319 ~l~~~~~~~---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 393 (510)
.+.+---.. +..+....++++....- ..|+ -+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 333221111 12556666777666532 2333 467778888888888999999999999987776 66777888877
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCC
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 470 (510)
+| .++..-|.++|+--+. .+.-++.-....++-+...|+-..++.+|++......+ ..++|..++.--..-|+
T Consensus 412 ~c-skD~~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred Hh-cCChhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 76 4788899999998886 44445555577888889999999999999999887443 46899999999999999
Q ss_pred --ChHHHHHHHH
Q 010458 471 --MPLIIVERMQ 480 (510)
Q Consensus 471 --~a~~~~~~m~ 480 (510)
.+..+-+++.
T Consensus 488 L~si~~lekR~~ 499 (656)
T KOG1914|consen 488 LNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHHHH
Confidence 4555555553
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=2.3e-08 Score=89.48 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
....+..|.+.++++.|.+.++.|.+
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=8.5e-07 Score=75.65 Aligned_cols=297 Identities=12% Similarity=0.043 Sum_probs=209.2
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH-H
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH-M 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l 181 (510)
......+...+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..|+.+...- |...-|.. -
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 34455677888888999999999999998888877 56677788889999999999999999998754 55555543 3
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
...+.+.+.+..|+.+...|... |+... ...-.......+|+..+..++++....| +..+.+...-...+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 45677889999999999988754 22222 1222223446789999999998875432 44555666666789999
Q ss_pred hHHHHHHHHHHHHc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------------Chhh--------H
Q 010458 260 PEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-------------NDAE--------Y 317 (510)
Q Consensus 260 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~--------~ 317 (510)
++.|.+-|+...+- |.. ....|+.-+ +..+.++++.|+++..++...|++. |... -
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998876 454 556676544 4556789999999999998877542 1110 1
Q ss_pred HHHH-------HHHHhcCCHHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010458 318 TCVI-------SSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389 (510)
Q Consensus 318 ~~l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 389 (510)
+.++ ..+.+.++++.|.+.+..|.-. ....|+.|...+.-.- ..+++.+..+-+.-+.+.++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 2222 3345778899998888777532 2345666665543322 234555555556666666553 4578889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 010458 390 LTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
++-.||+..-++-|-+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 9999999999998888887643
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=9.3e-08 Score=88.81 Aligned_cols=253 Identities=15% Similarity=0.076 Sum_probs=162.5
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
.+.-+.+.|++.+|.-.|+.....+| +...|..|......+++-..|+..+.+..+.... +..+...|.-.|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34455677777788777877777766 3677777777777777777777777777776522 455666666777777777
Q ss_pred CcHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 192 DKVPQMLQELKKNTSPDV---------VTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..|++.+++.....+|-. ..-+. ..+.....+....++|-++ .+.+..+|...+..|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 777777777654322110 00000 1122223344444555444 44444466677777777788888888
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
+|.+.|+......+. |...||.|...++...+.++|+..|.++++ +.|.- .+...|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888888876555 677888888888888888888888888877 44543 33344445677888888888777665
Q ss_pred Hhcc---------CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 341 ESIS---------GTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 341 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
+... ..++..+|..|=.++.-.++.|.+...
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4311 122335666666666666666644443
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=3.6e-06 Score=83.25 Aligned_cols=380 Identities=12% Similarity=0.016 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEK 165 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (510)
...|+..|=+..+.. +.-...|..++..|....+...|.+.|+++.+.++ +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555543 34455777788888777777788888888777755 466777788888888888888877433
Q ss_pred HHhCCCC-CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 166 MSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244 (510)
Q Consensus 166 ~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 244 (510)
..+.... .-...|....-.|.+.++..+|+.-|+...+..+.|...|..++.+|.++|.+..|.++|++.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~- 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL- 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-
Confidence 3332110 011223344445667778888888888777776667888888888888888888888888776554 333
Q ss_pred HHHHH--HHHHHHhcCChHHHHHHHHHHHHc------cCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-------HHHhc
Q 010458 245 ISYST--LTSLYIKMELPEKAATTLKEMEKR------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK-------MMSLF 309 (510)
Q Consensus 245 ~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~ 309 (510)
.+|.. ..-.-+..|.+.+|+..+...... +..--..++..+...+...|=..++..++++ .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222 223345667777777777766543 1111122333333333333322222222222 22211
Q ss_pred CCCChhhHHHHHHHH-----------------------HhcCCH---H---HHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 310 AKMNDAEYTCVISSL-----------------------VKLGEF---E---KAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
...+...|-.+.++| -..+.. + -+.+.+-.-. ....+..+|..++..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHH
Confidence 111111121111111 111111 1 0111111000 11123445555554443
Q ss_pred h----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 361 N----R----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 361 ~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|++.-+...|-+... ..+-...+|..+...+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEE
Confidence 3 1 23457888888877653 2256667666554 666888888888877765 33456778888888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
+..+++.|...|.......|.+...|-.........|+ ++..+|..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999998887777776666667776 66666654
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.9e-05 Score=78.42 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (510)
+..|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++...+.|.+++-.+.+.-..+....|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555555544221 133455555555555666665555555444443333322 345555
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
|++.++..+..+++ ..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 55555554443332 2244444445555555555555555444322 2344455555555555554
Q ss_pred HHH
Q 010458 369 ESF 371 (510)
Q Consensus 369 ~~~ 371 (510)
...
T Consensus 1240 VD~ 1242 (1666)
T KOG0985|consen 1240 VDA 1242 (1666)
T ss_pred HHH
Confidence 443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=3.8e-06 Score=76.32 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP- 260 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~- 260 (510)
..+...++.++|+.++.++.+..+.+..+|+.-..++...| ++++++..++++.+.. +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555666666666665554445555555555555554 3556666665555443 22334444443334444432
Q ss_pred -HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 010458 261 -EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 261 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
++++.+++++.+..++ +..+|+....++...|+++++++.++++++.+
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 4455555555555444 55555555555555555555666555555543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=7.3e-06 Score=79.51 Aligned_cols=359 Identities=14% Similarity=0.123 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCc-------ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDI-------KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (510)
...|..+.+.|.+..+.+-|.-.+-.|....+. ..+.+.-..+.......|.+++|+.++++-...
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 344555555555555555554444333321100 001112222223334455555555555553321
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHH----------hCCC-------
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK----------KNTS------- 206 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~------- 206 (510)
..|=..|-..|.+++|.++-+.=.+.. =..||.....-+-..++.+.|++.|++.. ...+
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 222233444555555555543322111 12234444444444555555555554321 1111
Q ss_pred ---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 207 ---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 207 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.|...|.-.....-..|+.+.|+.+|...++ |-.+++..|-.|+.++|-++-++- -|.....
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY 971 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY 971 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence 1223333333444444555555555544321 333444445555555555544332 2555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcC--CC--ChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFA--KM--NDAEYTCVISSLVKL--GEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
.+.+.|-..|++.+|..+|.+...... +. ....-..+...+... .+.-.|-.+|++.- . -....+.
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVm 1043 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVM 1043 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHH
Confidence 788888888888888888877654210 00 000001111111111 22223333343311 0 1223344
Q ss_pred HHHhcCCHHHHHHHHHH--------HHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------------
Q 010458 358 AYINRNQLEMAESFYNR--------LVT--KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS-------------- 413 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~--------~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------- 413 (510)
.|-+.|.+.+|+++--+ ++. .....|+...+....-++...++++|..++-.+.+-
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 56677777776654221 222 223345666666667777777777777766544331
Q ss_pred -------c---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 414 -------V---RKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 414 -------~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+ +.-.|+ ..+...+...|.++|.+..|.+-|.+.-. --..++++.+.|+
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGd 1186 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGD 1186 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCC
Confidence 0 011222 23566777888999999988877766533 2335666777777
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=6e-05 Score=70.04 Aligned_cols=388 Identities=11% Similarity=0.037 Sum_probs=236.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|.|..+|..+++-+... .++++.+.++++....|. +..|..-|..-...++++..+.+|.+-...- -+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 78999999999988666 999999999999988775 7899999999999999999999999877654 4566777777
Q ss_pred HHHHh-CCCcCcH----HHHHHHHHhC---CCCChhHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 183 NLYIS-NGQLDKV----PQMLQELKKN---TSPDVVTYNLWLAA---------CASQNDKETAEKAFLELKKTKIDPDWI 245 (510)
Q Consensus 183 ~~~~~-~g~~~~a----~~~~~~~~~~---~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~~~~~~~~ 245 (510)
..-.+ .|+...+ .+.|+-.... ...+...|+..+.. +....+++...++++++....+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 64443 3344332 3334444443 12244556655543 334456778888898887543322122
Q ss_pred HHHH------HHHHH-------HhcCChHHHHHHHHHHHHc--cCCCChhh---------------HHHHHHHHHhcCCH
Q 010458 246 SYST------LTSLY-------IKMELPEKAATTLKEMEKR--TCRKNRVA---------------YSSLLSLYTNMGYK 295 (510)
Q Consensus 246 ~~~~------l~~~~-------~~~g~~~~A~~~~~~~~~~--~~~~~~~~---------------~~~l~~~~~~~~~~ 295 (510)
.|+- =|+.. -+...+..|.++++++... |..-...+ |..+|.-=..++--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2321 11111 1234566777888777643 33222111 33333322111110
Q ss_pred --------HHHHHHHHHHHH-hcCCCChhh-HHH----HHHHHHhcCCH-------HHHHHHHHHHHhccCCCCcchHHH
Q 010458 296 --------DEVLRIWKKMMS-LFAKMNDAE-YTC----VISSLVKLGEF-------EKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 296 --------~~a~~~~~~~~~-~~~~~~~~~-~~~----l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
....-.+++... .+..|+..- +.. .-+.+...|+. +++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222221 122222211 111 11223334443 445555555443222223333333
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHH
Q 010458 355 LLAAYINR---NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 430 (510)
Q Consensus 355 l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 430 (510)
+...--.. .+.+....+++++...-..--..+|..+++.--+..-+..|..+|.++.+. +..+ ++.+.++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~--~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED--KRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc--cCCcchhhHHHHHHHH
Confidence 33211111 135566677777765322222356788888888888999999999999987 6666 66777888876
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH--HHHHHHHhh
Q 010458 431 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA--ETQKVLKIT 497 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~--~t~~~l~~~ 497 (510)
++. ++.+-|.++|+--.+.-..++.--...++-+...++ .+..+|++....++.||. ..|..++..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 664 689999999999887777777777778888888887 899999999988777765 456666653
No 104
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=3.1e-06 Score=76.87 Aligned_cols=149 Identities=7% Similarity=0.024 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
.++..+-..+...++.++|+.+.+++.+.... +..+|+....++...| ++++++..++++.+..+.+..+|+....++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 34445555666778888899998888876522 3345666666666666 578888888888887777777888776666
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc
Q 010458 220 ASQNDK--ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 220 ~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (510)
.+.|+. +++..+++++.+.. +-+..+|+...-.+.+.|+++++++.++++.+.++. +...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 666653 67788888887765 456778888888888888899999999998888766 666777666555443
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4e-07 Score=84.71 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=159.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
-+.+.|++.+|.-.|+...+.+ +-+...|-.|.......++-..|+..+++..+..+. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456677777777777766553 345667777777777777777777777777776544 56666777777777777777
Q ss_pred HHHHHHHHHHhcCC-----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 298 VLRIWKKMMSLFAK-----M---NDAEYTCVISSLVKLGEFEKAENIYDEWES-ISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 298 a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
|..+++.-+...++ + +...-.. ..+..........++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777766443211 0 0000000 112222334444555555443 33346777777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
...|+.++...+. |..+||.|...++...+.++|+..|.++++ ++|+ +++...|.-+|...|.+++|.+.|-.+
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 8888888876433 666888888888888888888888888884 4666 446667777888888888888887765
Q ss_pred HhCCCC----------CHHHHHHHHHHHHHcCC
Q 010458 448 RNAGHV----------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 448 ~~~~~~----------~~~~~~~l~~~~~~~g~ 470 (510)
...... +..+|.+|=.++.-.++
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 432211 23577777777666666
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=4.2e-07 Score=92.57 Aligned_cols=222 Identities=13% Similarity=0.091 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
+...|-..|......++.++|.+++++.... ++.-. ...|.++++.-..-|.-+...++|+++.+- --.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455666666666666666666666666543 11111 124555555555556556666666666553 11224466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKK 397 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~ 397 (510)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.++++-+.|..++.+.++.=++ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 66666666666666666666666432 235556666666666666666666666666654111 1122334444455566
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCC
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS---TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 470 (510)
|+.+++..+|+..+. ..+.....|+.+++.-.++|+.+.++.+|+++...+... ...|...+..--..|+
T Consensus 1614 GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred CCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 666666666666665 344455666666666666666666666666666666542 2345555555555565
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=1.6e-06 Score=88.47 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CC-----ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 88 KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MR-----GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
+.|.++-+.++.. |.+.-.|...|......++.++|+++++++... ++ ....|.+++..-..-|.-+...+
T Consensus 1442 esaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3444444444432 566677888888888889999999988887655 22 14677788777777788888888
Q ss_pred HHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
+|+++.+.- |+ ..|..|...|.+.+.+++|.++|+.|.+........|..++..+.+.++-+.|..++.+..+.-.
T Consensus 1519 VFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1519 VFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 999888753 33 35778888888899999999999999888657778888888888888888889888888766421
Q ss_pred C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--hhH
Q 010458 241 D-PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEY 317 (510)
Q Consensus 241 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 317 (510)
. -........+..-.+.|+.+.+..+|+......++ -...|+..++.-.+.|+.+.+..+|+++...++.|.. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 1 12333445566667888888888899888877554 6678888888888888888899999888887766543 234
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 010458 318 TCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~ 335 (510)
...+..--..|+-+.++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHhcCchhhHHH
Confidence 444444344455444333
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=7.8e-07 Score=78.44 Aligned_cols=191 Identities=14% Similarity=0.027 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--h
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--A 315 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 315 (510)
......+..++..+...|++++|...|+++....+. +. ..+..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345566777888888999999999999988876432 22 46677888888999999999999998875432121 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 316 EYTCVISSLVKL--------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387 (510)
Q Consensus 316 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 387 (510)
++..+..++... |+.++|.+.++.+.+..+. +...+..+.... .... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHH------HHH--------HHH
Confidence 344444555543 6677788888887754322 222222111110 0000 000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
..+...+.+.|++.+|+..++++++..++.+.....+..+..++.+.|++++|...++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2455667888888888888888886522222345678888888888888888888888876654
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=3.4e-07 Score=87.41 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=154.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
||-...-..+...+...|-...|..+|+++ ..|..++.+|...|+..+|..+.....++ +||+..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 333344455667777778778887777763 45666777777778777777777666663 377777777777
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 263 (510)
......-+++|+++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 766666677777777765332 11222222334677788887777754443 23456677777777778888888
Q ss_pred HHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
.+.|.......+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+..+...
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 8888777765333 55678888888888888888888888877765 334455666666677778888888877776652
Q ss_pred c-CCCCcchHHHHHHHH
Q 010458 344 S-GTGDPRVPNILLAAY 359 (510)
Q Consensus 344 ~-~~~~~~~~~~l~~~~ 359 (510)
. ...|..+...++...
T Consensus 617 ~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhcccchhhHHHHHHH
Confidence 1 112444444444433
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=2.5e-06 Score=86.36 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
+.+...|..|+..+...+++++|.++.+...+.. |.....|...+..+...++.+++.-+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL---------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh---------------hhh
Confidence 3466778999999999999999999999877764 66667777777777777776655444 344
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
+......++.....+...|.+.+ -+..++..+..+|-+.|+.+++..+|+++.+..+.|+.+.|.+...+... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 44445555555555555666643 34457888889999999999999999999888877899999999999888 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|.+++.+.... +...+++.++.+++.++....+. +...+..+.+.....-....
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~---------- 221 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTR---------- 221 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccch----------
Confidence 99888876543 55566777777777777765332 32222222222211111111
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
-..++..+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 222 -----~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 -----LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1122333344455556666666666666654422 4444555555554
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=7.3e-07 Score=85.23 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
-..+...+...|-...|..+|++. ..|..++.+|...|+..+|..+..+..++ +||...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 355677788889999999999775 35777899999999999999999988884 6789999999988877
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.--+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788898888775432 12222223345789999999999877654 33567888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
|.......+. +...||.+-.+|.+.++-.+|...++++.+. + .-+..+|...+....+.|.+++|.+.+.++....
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999886432 5678999999999999999999999999986 5 4456677777778899999999999999887654
Q ss_pred CC--CHHHHHHHHHHHH
Q 010458 452 HV--STEIYNSLLRTYA 466 (510)
Q Consensus 452 ~~--~~~~~~~l~~~~~ 466 (510)
.. +..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 32 4444444444433
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=7.2e-07 Score=78.64 Aligned_cols=185 Identities=12% Similarity=-0.009 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-h---
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPDKMRG-P--- 140 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--- 140 (510)
+.+...+..+...+.+.|++++|...|+.+.... |.++ ..+..+..++...|++++|...++.+.+..|+ +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677788888889999999999999988764 4333 46677888889999999999999998877664 2
Q ss_pred hhHHHHHHHHHhC--------CCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 141 DTCSALLHSYVQN--------KKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 141 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.++..+..++... |++++|.+.|+.+.+.. |+.. .+..+..... ..... ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----------~~~~~-------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----------LRNRL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----------HHHHH-------HHH
Confidence 2455555666554 77888999998888764 4432 2222211100 00000 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12456678889999999999999876532 223567888999999999999999998888765
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=0.00014 Score=70.99 Aligned_cols=273 Identities=13% Similarity=0.104 Sum_probs=160.8
Q ss_pred CccHHHHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 38 RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 38 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+.-+..+-.....-++|..++.+-.+ |..|=+.|-..|+|++|+++-+.--+. .-..+|......+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYL 868 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHH
Confidence 333344444444444788888877655 444556677789999999887653332 3456777777778
Q ss_pred HHhcChhhHHHHHHhcccC----------C-----------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc
Q 010458 118 SKIRGLSSAENFFENLPDK----------M-----------RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~----------~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 176 (510)
-..++.+.|++.|++.... . .++..|.-....+-..|+.+.|+.+|....+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 8888899988888874321 1 1234445555555567888888888876654
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH----------hCCCCCCHHH
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK----------KTKIDPDWIS 246 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----------~~~~~~~~~~ 246 (510)
|-++++..|-.|+.++|..+-++-. |..+...+.+.|-..|++.+|..+|.+.. +++. +...
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L 1012 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRL 1012 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHH
Confidence 4555666666677777766655432 55566667777777777777777766542 1221 1111
Q ss_pred HH-------------------------HHHHHHHhcCChHHHHHHHH--------HHHHc--cCCCChhhHHHHHHHHHh
Q 010458 247 YS-------------------------TLTSLYIKMELPEKAATTLK--------EMEKR--TCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 247 ~~-------------------------~l~~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~ 291 (510)
+| ..+..|-+.|.+.+|+++-- +++.. ....|+...+.-...++.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 11 12234555666666655321 12222 233355566666667777
Q ss_pred cCCHHHHHHHHHHHHH----------hc----------------CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS----------LF----------------AKMND----AEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
..++++|..++-.... .| ..|+. .....+...|.+.|.+..|-+-|.+
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 7777777766544321 11 11222 2356667778888888777665544
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=8e-06 Score=68.84 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK--- 396 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 396 (510)
-...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3445667777777777765521 22222223344556667777777777777642 55566656555544
Q ss_pred -cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC---h
Q 010458 397 -KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM---P 472 (510)
Q Consensus 397 -~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---a 472 (510)
.+.+.+|.-+|+++.+ +..|+..+.+....++...|++++|..++++.......++++...++..-...|.. .
T Consensus 185 ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 3456777777777775 56777777777777777778888888888877777777777777777766666763 3
Q ss_pred HHHHHHHHh
Q 010458 473 LIIVERMQK 481 (510)
Q Consensus 473 ~~~~~~m~~ 481 (510)
.+.+.+++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 344444443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=6.5e-06 Score=69.42 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
..+-..+...|+-+....+..+.....+.|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445555566666666666665554444455555556666666677777776666665443 456666666666666777
Q ss_pred ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+.+.|..-|.+..+..+. +...++.+.-.+.-.|+++.|..++......+. -|..+-..+..+....|+++.|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777776666666665333 555666666666666666666666666655422 244445555555666666666666554
Q ss_pred H
Q 010458 339 E 339 (510)
Q Consensus 339 ~ 339 (510)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=0.00039 Score=68.78 Aligned_cols=426 Identities=13% Similarity=0.120 Sum_probs=239.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVREL--RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 130 (510)
..|.+....+.+. .||.. |..+++++ .+.|+.++|..+++.....+ +.|..+...+-..|.+.++.++|..+|
T Consensus 26 kkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 26 KKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6777777776654 23322 34444443 46788888888888776554 346777777888888889999999999
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCc---------HHHHHHH
Q 010458 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDK---------VPQMLQE 200 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~---------a~~~~~~ 200 (510)
+.+....|+......+..+|.+.+++.+-.++=-++-+ .++-++..+=++++...+.- ..+. |.+.++.
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99888888877777777888888877665554444443 22334444444555554432 2222 3334444
Q ss_pred HHhCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 201 LKKNT-SP-DVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 201 ~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
+.+.. +- +..-.......+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D- 258 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND- 258 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-
Confidence 44432 11 222233334445567888888888833 333333334444455677778888888888888888887544
Q ss_pred ChhhHHHHHHHHH----------------hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH---hcCCHHHHHHHHH
Q 010458 278 NRVAYSSLLSLYT----------------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV---KLGEFEKAENIYD 338 (510)
Q Consensus 278 ~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~ 338 (510)
| |...+..+. ..+..+...+...+..... ....|-+-+.+.. .-|+.+++.-.|-
T Consensus 259 d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 259 D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 3 333222211 1112222222222222211 1122333333333 3466666544433
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----H---HHHHHHHHHhcC-----CHHHHHHH
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT----T---WELLTWGYLKKG-----QMEKVLEC 406 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~~-----~~~~a~~~ 406 (510)
+ +.| +-..|..=+..|...=..+.-..++...... .++.. . +...+..-.-.| .-+....+
T Consensus 333 ~--kfg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 333 K--KFG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred H--HhC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 2 122 2223344444555555556666666666543 12221 0 111111111122 12233333
Q ss_pred HHHHhh---c----cCCCCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 407 FKKAIG---S----VRKWVPDH---------RLITAAYNKLEEQGDID---GAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 407 ~~~~~~---~----~~~~~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+.+... . .++.-|+. -+.+.+++.+.+.++.. +|+-+++......+.+..+--.+|+.|+-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 322221 1 11233332 24567778888888754 66777777777777788888899999999
Q ss_pred cCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 468 AGK--MPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 468 ~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
.|- .|.++|+.|.-..++-|+.-+-++-.+.
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 998 8999999998888888877766665544
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=1.8e-05 Score=72.66 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=123.0
Q ss_pred ChhhHHHHHHhcccC----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 122 GLSSAENFFENLPDK----MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
++..+...-+.++.. +|+...+...+.+......-..+-.++.+..+. --...+--....+...|++++|...
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHH
Confidence 344455555555443 234555555555444333333333333322221 1112222233344567778888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
++.+....+.|+..+......+.+.++..+|.+.++++.... |+ ....-.+..++.+.|++.+|+.+++......+.
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 888777766677777777778888888888888888876653 33 455566777788888888888888777776544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
|+..|..|.++|...|+..++..-..+ .+...|+++.|...+....+.
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 777888888888888877776655544 344567777777777766653
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=1.6e-06 Score=69.26 Aligned_cols=110 Identities=9% Similarity=-0.067 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+...|++++|...|+.+....+. +...|..+...+...|++++|...|+++... .+.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHH
Confidence 445667777888888888888888776533 6677788888888888888888888888863 344677778888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
...|++++|...|+...+..|.++..|.....+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8888888888888888888877777666555444
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=3.5e-06 Score=71.22 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=83.7
Q ss_pred CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHH
Q 010458 188 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY-IKMEL--PEKAA 264 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 264 (510)
.++.+++...++...+..+.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4455566666666666666677777777777777788888877777776654 33566666666653 56566 47777
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+++++..+.++. +...+..+...+...|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777555 6677777777777777888888777777765
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.8e-06 Score=71.61 Aligned_cols=157 Identities=15% Similarity=0.025 Sum_probs=78.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
..+-..+...|+-+.+..+........ +.|....+..+....+.|++..|...+.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 333444444455555444444433221 1133333445555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
+.+.|..-|.+..+.. ..+....+.+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555554432 223344455555555555555555555555544322 44444555555555555555555443
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=1.3e-05 Score=77.00 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
+.+......|.+|+.+++.+++... -..-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556667777777777766522 23345666777777777777777775431 244456677777777
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
++|.++-.+.. ++......|-+-..-+-.+|++.+|.++|-... .|+ ..|..|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 333344445444555556666666666553322 122 2344555556555555555543
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
... .-..|...+..-+...|+.+.|...|-+
T Consensus 877 h~d-----~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 877 HGD-----HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred Chh-----hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 211 1123444455555555666665555443
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.3e-08 Score=56.16 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 123
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=3.3e-05 Score=74.22 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=126.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC
Q 010458 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (510)
.+.+......|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.- .++--|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555667788888888887766532 23456777888888888888888886542 34456778888888
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
|+.|.++-.+.. |.......|-.-..-+-..|++.+|+++|-.+. .|+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888888776653 233344455555566667788888887775543 344 356778888888887777665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 375 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
-... .-..|-..+..-+-..|+...|..-|-++-+ |.+-++.|...+.|++|.++-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d-----------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-----------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----------HHHHHHHhhhhhhHHHHHHHH
Confidence 4322 1224555666777777888887777766542 334445555666666665443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=7.5e-06 Score=69.23 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY-LKKGQ--MEKVL 404 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~ 404 (510)
++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.++. +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444333 224445555555555555555555555555554322 344444444432 34444 35555
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
++++++++. .+-+..++..+...+.+.|++++|...|+++.+..++
T Consensus 131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555542 1223445555555555555555555555555555544
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.64 E-value=6.3e-05 Score=74.87 Aligned_cols=354 Identities=12% Similarity=0.007 Sum_probs=221.6
Q ss_pred cChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 121 RGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
.+...|...|-+.....++ ...|..|...|....+...|.+.|+...+.+.. +...+......|+...+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3477788877777777665 678999999999888999999999999887633 67788999999999999999999954
Q ss_pred HHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 200 ELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 200 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
..-+..+. -...|....-.|.+.++...+..-|+...... +.|...|..++.+|..+|++..|.++|.+.....+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 44333222 22334445667788999999999999987765 457888999999999999999999999999875322
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhcCCH-------HHHHHHHHHHHhcc
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA------KMNDAEYTCVISSLVKLGEF-------EKAENIYDEWESIS 344 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~ 344 (510)
+...--...-..+..|.+.++...+.......- .--..++......+...|-. +++++.|.-.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222222233445678999999998887755311 00112222222222222222 23333333332222
Q ss_pred CCCCcchHHHHHHHHHhcCCHH------HHHHHH-HHHHhCCC--------------------CCCHHHHHHHHHHHHh-
Q 010458 345 GTGDPRVPNILLAAYINRNQLE------MAESFY-NRLVTKGI--------------------KPCYTTWELLTWGYLK- 396 (510)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~------~A~~~~-~~~~~~~~--------------------~p~~~~~~~l~~~~~~- 396 (510)
...+...|-.+..++.-.-..+ ....++ .+....+. ..+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1122222222222211100000 000001 11111111 1123445444444333
Q ss_pred ---c----CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 397 ---K----GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 397 ---~----~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
. .+...|+..+++.++. ...+..+|+.|... ...|++.-|...|-+-....+.+..+|..+...+....
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 2334788888888863 23355566666544 66688888888888888888888888988888888888
Q ss_pred C--ChHHHHHHHHh
Q 010458 470 K--MPLIIVERMQK 481 (510)
Q Consensus 470 ~--~a~~~~~~m~~ 481 (510)
+ .|.+.|...+.
T Consensus 865 d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS 878 (1238)
T ss_pred cHHHhhHHHHhhhh
Confidence 8 67777877765
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=1.1e-05 Score=81.68 Aligned_cols=223 Identities=15% Similarity=0.177 Sum_probs=147.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (510)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 347778888888888889999999988876554 333 33444444466666665555544 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+.......++..+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333343333333344332 2233467777778888888888888888888766 44777788888888888 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------------ccCCCCCCHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG------------------SVRKWVPDHRLITA 426 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~p~~~~~~~ 426 (510)
+++|..++.+.+.. +...+++..+.++|.++.. .. +..--+.++..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~-~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR-EFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh-ccchhHHHHHH
Confidence 88888888877654 2333344444444444433 20 22223445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+-..|...++++++..+++.+.+..+.+.....-++..|..
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 66778888999999999999999999988888999988883
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=1.3e-05 Score=80.53 Aligned_cols=132 Identities=8% Similarity=0.008 Sum_probs=66.4
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
+.++..+..+..+....|++++|..+++.+.+..|+ ......++..+.+.+++++|+..+++....... +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 344555555555555555555555555555555443 344444555555555555555555555554311 223334444
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
.++.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555554333344555555555555555555555555543
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00086 Score=67.25 Aligned_cols=306 Identities=13% Similarity=0.135 Sum_probs=199.1
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
..+...+-+++|..+|++..- +....+.|+. .-++.+.|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555666666655422 2333333333 2345555555444332 456799999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 274 (510)
++-|-+. .|+..|..++..+.+.|.+++-.+++...++..-+|... +.|+-+|++.++..+.++++
T Consensus 1124 ieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1124 IESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------
Confidence 8877654 378889999999999999999999998887776666544 46888999999887655443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHH
Q 010458 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
..|+......+..-|...+.++.|.-+|... ..|..+...+...|++..|.+.-++. .+..+|..
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKE 1254 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHH
Confidence 2467777888888888888888887777643 33677777788888888887665543 25677877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
+-.+|...+.+.-| +|-..++-....-..-++..|-..|-+++.+.+++..+.. -+..-..|+.+.-.|.+-
T Consensus 1255 VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL---ERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL---ERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHhc
Confidence 77777766655433 2333333344555677788888888888888888877631 122344566666666554
Q ss_pred CCHHHHHHHHHHHHh-CCCC-------CHHHHHHHHHHHHHcCC
Q 010458 435 GDIDGAEHLLVTLRN-AGHV-------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 g~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~g~ 470 (510)
+++...+.++-.-. .+++ ....|+-++..|.+-..
T Consensus 1327 -kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1327 -KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444443322 1211 23456666666665444
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=1.6e-06 Score=69.36 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
.+..+...+...|++++|...|+.....+ |.+...+..+..++...|++++|...|+......| ++..+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35556677777888888888888877764 66777778888888888888888888888877766 4677777778888
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010458 152 QNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~ 170 (510)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877754
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.3e-08 Score=54.98 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred cCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010458 65 EGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98 (510)
Q Consensus 65 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 98 (510)
.|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999874
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4e-05 Score=64.77 Aligned_cols=151 Identities=12% Similarity=0.104 Sum_probs=73.7
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CC
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NG 189 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 189 (510)
+..|+..|++++|.+..+... +......=+..+.+..+++-|...++.|.+.. +..+.+.|..++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 344555556666655555421 23333333344455555566666666665532 44455545544443 23
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLK 268 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 268 (510)
...+|.-+|++|.++.+|+..+.+-...++...+++++|..+++...... ..+..+...++-+-...|...+ ..+.+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 45555555555555555555555555555555555555555555554443 2234444444444444443322 233444
Q ss_pred HHHH
Q 010458 269 EMEK 272 (510)
Q Consensus 269 ~~~~ 272 (510)
++..
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 4443
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=3.2e-05 Score=77.67 Aligned_cols=160 Identities=10% Similarity=-0.036 Sum_probs=122.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 217 (510)
++..+..|.....+.|++++|..+++...+.. |+ ...+..+...+.+.+++++|...+++.....+.+....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 47888888888889999999999999888865 54 4466778888888999999999999988887778888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..+. +...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHH
Confidence 8999999999999999988743 344778888888888999999999999988876 2334445554443 3334
Q ss_pred HHHHHHHHHHh
Q 010458 298 VLRIWKKMMSL 308 (510)
Q Consensus 298 a~~~~~~~~~~ 308 (510)
-...++.+.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 44455555433
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8.7e-05 Score=62.32 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=142.7
Q ss_pred HhcCChHHHHHHHHHHHHc---c-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcC
Q 010458 255 IKMELPEKAATTLKEMEKR---T-CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLG 328 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 328 (510)
....+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+.... |.. .+-..-..-+-..|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh
Confidence 3456788999999888754 4 4445443 5556667778899999999999988874 333 22222222345679
Q ss_pred CHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010458 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (510)
++++|+++++.+.+.. +.|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-+++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999766 335666666666667788888888888888876 45589999999999999999999999999
Q ss_pred HHhhccCCCCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHH
Q 010458 409 KAIGSVRKWVPD-HRLITAAYNKLEEQG---DIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 409 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
+++- +.|- +..+..+...+.-.| +.+.|++.|.+..+..+.+...
T Consensus 179 E~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 179 ELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9984 3554 445566666655544 5678899999999887755433
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.9e-05 Score=64.32 Aligned_cols=164 Identities=15% Similarity=0.037 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 010458 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188 (510)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 188 (510)
|..++-+....|+.+.|..+++.+....|. ..+-..-.-.+-..|++++|.++|+.+.+.+ +.|..++.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444455555666777777777666655443 1111111122334566777777777776655 22445555445555556
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAAT 265 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 265 (510)
|+.-+|++-+....+....|...|.-+...|...|+++.|.-.++++.-.. +.+...+..+...+.-.| +.+.+.+
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666677776666666666677777777777777777777777777765432 223344444544444433 4455666
Q ss_pred HHHHHHHccC
Q 010458 266 TLKEMEKRTC 275 (510)
Q Consensus 266 ~~~~~~~~~~ 275 (510)
.|.+..+...
T Consensus 213 yy~~alkl~~ 222 (289)
T KOG3060|consen 213 YYERALKLNP 222 (289)
T ss_pred HHHHHHHhCh
Confidence 7776666533
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.3e-05 Score=70.30 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=61.6
Q ss_pred HhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHH
Q 010458 119 KIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQ 196 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 196 (510)
..|++++|+..++.+....|+ +..+....+.+.+.++.++|.+.++.+.... |+ ...+..+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHH
Confidence 445555555555555555443 3344444455555555555555555555543 33 3344455555555555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+++......+.|...|..|.++|...|+..++.....+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555555554444
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=8.3e-06 Score=64.79 Aligned_cols=117 Identities=10% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC
Q 010458 58 TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137 (510)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (510)
.++...+.. +.+......+...+...|++++|.+.|+.+...+ |.++..+..+...+...|++++|...++......
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445544432 2344556677777888888888988888887764 6677888888888888888888888888887766
Q ss_pred C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH
Q 010458 138 R-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179 (510)
Q Consensus 138 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 179 (510)
| ++..+..+...+...|++++|...|+...+.. |+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 5 46777778888888888888888888888765 5555443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1.4e-05 Score=63.44 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+......+...+...|++++|.+.++.+...+ +.+...+..+..++.+.|++++|...+++..+.++. +...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 44444445555555555555555555554433 234455555555555555555555555555554322 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~ 307 (510)
.+...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=7.2e-05 Score=57.77 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIK--PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
++..++..+.+.|++++|...|+.+.+.... .....+..+...+.+.|+++.|...|+.+....++.+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666677777777777776654221 11234555666677777777777777776653111111244566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
.++.+.|+.++|...++++.+..|.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6777777777777777777776665544443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=5.1e-05 Score=60.89 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKS 156 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 156 (510)
.++...+...++.+.+.. |.+ ......+...+...|++++|...|+.+....|++ .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555554432 222 1222233344455555555555555555443332 2233344455555555
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
++|+..++...... ..+..+......+.+.|+.++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554422211 122233344444445555555554444
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=6.3e-05 Score=69.92 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
-.+|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++++..+..+.+..........+.+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3456666777888888999998888764 33 4556777777777778888888888776666777777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
++++.|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888877653 33455788888888888888888888776653
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00019 Score=57.60 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 010458 326 KLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY--TTWELLTWGYLKKGQME 401 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~ 401 (510)
..++...+...++.+.+...... ....-.+...+...|++++|...|+.+......|+. .....+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36666777666777665432210 112233445666777777777777777765432221 23334566667777777
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
+|+..++.... -......+....+.+.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777765432 2234445666677777777777777777653
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00016 Score=67.27 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.++..+...++++.|.++|+++.+.. | .....++..+...++-.+|.+++++.++..+. +...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 33444444455555555555555432 2 23334555555555555555555555544221 3444444455555566
Q ss_pred CHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
+++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666532 333 3356666666666666666665555443
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.0035 Score=54.98 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=104.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (510)
.....+.+.|++++|.+.|+++....+.+ ... .-.++.++.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34455566777777777777777653332 222 13455666777777777777777766533322233333333322
Q ss_pred h--c---------------CCH---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 326 K--L---------------GEF---EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385 (510)
Q Consensus 326 ~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 385 (510)
. . .|. ..|...|+.+++. -|+. .-..+|...+..+... -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHH
Confidence 1 1 122 2344555555543 2222 1223333333333221 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
.--.+..-|.+.|.+..|+.-++.+++..++.+........++.+|.+.|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112456678888999999999999988765666667778888899999999999988777654
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=6.3e-05 Score=58.11 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALL 147 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~ 147 (510)
++..++..+.+.|++++|.+.|+.+.+... .+..+..+..+..++.+.|++++|.+.|+.+....|+ +.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344444555555555555555555554320 0111234444555555555555555555555443332 23344444
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=9.6e-06 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 175 (510)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998874
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.002 Score=58.34 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH-------------H
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-------------T 318 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 318 (510)
.++.-.|+.++|.++--.+.+.... +......-..++.-.++.+.+...|++.+.. .|+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 4556677777777776666665322 2222222223334466777777777776653 3333211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTW 392 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~ 392 (510)
.-..-..+.|++..|.+.|.+.+... ..++...|.....+..+.|+.++|+.--++..+. |.. .|..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 11222344556666666666555322 2233333444444555556666666555555543 221 1112223
Q ss_pred HHHhcCCHHHHHHHHHHHhhc
Q 010458 393 GYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~ 413 (510)
++...++|++|.+-|+++.+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555543
No 147
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.05 E-value=0.0097 Score=54.67 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWG 393 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 393 (510)
.|...+....+..-.+.|..+|.+..+.+ ..+++.++++++..++ .|+...|.++|+--... -||...| +-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 35556666666677777888888877766 5577777777777665 56667777777754443 2344433 344555
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+..-++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+++.+.-|
T Consensus 476 Li~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 476 LIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 56677777777888776653 3333 55777777777777777777777777766544
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.5e-05 Score=45.96 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.5e-05 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 173 (510)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988877
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00022 Score=52.21 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
..+...+...|++++|...++++.+.... +...+..+...+...+++++|.+.++..... .+.+..++..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHHH
Confidence 34455555566666666666666554221 2344555555666666666666666666542 2223345555666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 010458 433 EQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~ 451 (510)
..|+++.|...+.+..+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 6666666666666655443
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=2e-05 Score=45.02 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.93 E-value=0.03 Score=56.09 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCccHHHHHhh---hcc--cCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 37 GRDTLGRRLLS---LVY--AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 37 ~~~~~~~~l~~---~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
.|+..+..++. +.. ..++|..+++.....+.. |..+...+-..|...++.++|..+|+...... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHH
Confidence 45555444433 222 338899999987765544 88889999999999999999999999999875 4577777
Q ss_pred HHHHHHHHhcChhh----HHHHHHhcccCCCChhhHHHHHHHHHhCC-C---------HHHHHHHHHHHHhCC-CCCCcc
Q 010458 112 VHLDLISKIRGLSS----AENFFENLPDKMRGPDTCSALLHSYVQNK-K---------SAEAEALMEKMSECG-FLKCPL 176 (510)
Q Consensus 112 ~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~A~~~~~~~~~~~-~~p~~~ 176 (510)
.+..+|.+.+.+.+ |.++++..++ ++..+=++++...+.. . ..-|.+.++.+.+.+ ..-+..
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 78888888877664 5566665443 3444444455444321 1 134556666666654 111112
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHH-HHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQE-LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
-.......+...|++++|++++.. ..+. ..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 222333445578899999999954 3333 333566667778888999999999999999988864
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.92 E-value=0.00043 Score=64.67 Aligned_cols=103 Identities=9% Similarity=-0.003 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
..+...|++++|+..|+++++.+.. +...|..+..+|...|++++|+..+++++.. .+.+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCC
Confidence 3445667777777777777765433 4556666667777777777777777777653 22345566666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 437 IDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
+++|...|++..+.++.+......+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777777777777665554444433
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00019 Score=52.53 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
..+...+...|++++|.+.++...+.... +..++..+...+...|++++|...+...
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333444444444444444443333211 2233333344444444444444444333
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.00073 Score=56.06 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 430 (510)
..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.++++. .+-+...+..+..+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 115 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 3344444444444444444444443222111 233444444445555555555555554432 11123333334444
Q ss_pred HHHcCC--------------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 431 LEEQGD--------------IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 431 ~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+...|+ +++|.+++++....++.+ |..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 444443 456666666666665544 4445554444443
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.88 E-value=0.00031 Score=65.67 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNT---SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250 (510)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 250 (510)
+......+++.+....+.+.+..++.+..... .--..|.+++++.|.+.|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44444445555544555555555555554431 012233345555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555544444444444444444433
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.87 E-value=0.019 Score=51.90 Aligned_cols=318 Identities=15% Similarity=0.091 Sum_probs=198.5
Q ss_pred HHHHHhhhcccC-CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--ccChHHHHHHHHHHHHccCcccChhhHHHHHHH-
Q 010458 41 LGRRLLSLVYAK-RSAAITMRKWKEEGHTVHKYELNRIVRELRK--LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL- 116 (510)
Q Consensus 41 ~~~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 116 (510)
+.+.+.+.+-.+ ..+...|..-++. ..|..|-.++.. .|+-..|.++-.+..+. +..|......++.+
T Consensus 57 llwwlv~~iw~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQ 128 (531)
T COG3898 57 LLWWLVRSIWESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQ 128 (531)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHH
Confidence 344555544333 6666666664432 135555555543 57888888877765532 34455555555543
Q ss_pred -HHHhcChhhHHHHHHhcccCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc
Q 010458 117 -ISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193 (510)
Q Consensus 117 -~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 193 (510)
-.-.|+++.|.+-|+.|... |.. .-...|.-..-+.|..+.|.+.-+...+.-.. =...+...+...+..|+|+.
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 45679999999999999864 221 12233444445788999998888887765422 35678889999999999999
Q ss_pred HHHHHHHHHhC--CCCChhH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHH
Q 010458 194 VPQMLQELKKN--TSPDVVT--YNLWLAAC---ASQNDKETAEKAFLELKKTKIDPDWIS-YSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 194 a~~~~~~~~~~--~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~ 265 (510)
|+++++.-+.. ..++..- -..|+.+- .-..|...|...-.+..+ +.||... -..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 99999887665 4444322 12222221 123456666666655544 3455332 2334678899999999999
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
+++.+-+..+.|+.. .+..+.+.|+ .++.-++..... ..+|+ ..+...+..+....|++..|..--+...+.
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999998876665542 2233345554 333333333221 13444 456667777788889998887766666543
Q ss_pred cCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 010458 344 SGTGDPRVPNILLAAYIN-RNQLEMAESFYNRLVTK 378 (510)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 378 (510)
.|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5677777777765544 48999999988888764
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=4.4e-05 Score=54.59 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 439 (510)
.|+++.|+.+++++.+.... |+...+-.+..++.+.|++++|+.++++ . ...|+ ......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~----~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L----KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H----THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h----CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46777788888877775432 2344455577777888888888888877 2 22332 3455555777778888888
Q ss_pred HHHHHHH
Q 010458 440 AEHLLVT 446 (510)
Q Consensus 440 A~~~~~~ 446 (510)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877765
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00044 Score=59.93 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=109.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
-+.+.+++++|...|.+.++..+ -|...|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 46788999999999999987653 36777888888999999999999988888876432 44589999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHH-HcCCHH---HHHHHHHHHHhCCC-C-CHHHHHHHHHHHHHcCCChHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLE-EQGDID---GAEHLLVTLRNAGH-V-STEIYNSLLRTYAKAGKMPLIIV 476 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~---~A~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~a~~~~ 476 (510)
|++.|++++ .+.|+..+|..=+.... +.+... .+..-++.....|. + ....++ +-.........+-
T Consensus 168 A~~aykKaL----eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~----~~l~nnp~l~~~~ 239 (304)
T KOG0553|consen 168 AIEAYKKAL----ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN----GDLMNNPQLMQLA 239 (304)
T ss_pred HHHHHHhhh----ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc----cccccCHHHHHHH
Confidence 999999998 56888887755544432 222222 33333333333333 2 223333 0000111344555
Q ss_pred HHHHh------CCCCCC--HHHHHHHHhhcC
Q 010458 477 ERMQK------DNVQMD--AETQKVLKITSE 499 (510)
Q Consensus 477 ~~m~~------~~~~pd--~~t~~~l~~~~~ 499 (510)
..|.. .+-.|+ .-+...++.+.+
T Consensus 240 ~~m~~~~~~~~~~~~~~~~~~~i~~~~~a~~ 270 (304)
T KOG0553|consen 240 SQMMKDGALNGPKNGPDNKTDMIASLIGAGG 270 (304)
T ss_pred HHHhhcccccCccCCCcchhhHHHHHHhccC
Confidence 66665 234466 555666666554
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00037 Score=65.21 Aligned_cols=125 Identities=11% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh
Q 010458 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315 (510)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (510)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=..-|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556777778888888888888888888887765 222224456688888989888899988888888888888999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
+++.+|+.+.+.|++..|.++...|.......+..++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999998888888887776666666666555555554
No 161
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.83 E-value=0.025 Score=52.12 Aligned_cols=418 Identities=11% Similarity=0.091 Sum_probs=246.4
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.|.|...|-.||..+..+|..++..++++++... +|.-+.+|..-+..-...+++...+.+|.+......+...|...
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 4778999999999999999999999999999875 57778888888888888899999999999988777778888887
Q ss_pred HHHHHhCCCH------HHHHHHHHHHHh-CCCCCCc-chHHHHHHHHH---hCCC------cCcHHHHHHHHHhCCCCCh
Q 010458 147 LHSYVQNKKS------AEAEALMEKMSE-CGFLKCP-LPYNHMLNLYI---SNGQ------LDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 147 ~~~~~~~~~~------~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~~~~~~ 209 (510)
++.-.+..+. ..-.+.|+-... .++.|-. .-|+..+..+- ..|. .+.....|.++....-.+.
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 7754443211 112233444333 4455543 34665554433 2333 3445556666654411122
Q ss_pred -hHHHHH------HHHHHh---cC----CHHHHHHHHHHHHh--CCCC----CCHHHHHH-----------HHHHHHhc-
Q 010458 210 -VTYNLW------LAACAS---QN----DKETAEKAFLELKK--TKID----PDWISYST-----------LTSLYIKM- 257 (510)
Q Consensus 210 -~~~~~l------~~~~~~---~~----~~~~a~~~~~~m~~--~~~~----~~~~~~~~-----------l~~~~~~~- 257 (510)
..|+.. ++-... .| -+-.|...+++... .|+. .+..+++. .|..-...
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 222221 111100 11 13455556655421 2221 11222221 22211111
Q ss_pred ----CCh--HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH-HHHhcCCH
Q 010458 258 ----ELP--EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-SLVKLGEF 330 (510)
Q Consensus 258 ----g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 330 (510)
|+. ...--++++.... +.-....|----.-+...++-+.|++....... ..|. .+..+. .+...++-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccH
Confidence 111 1112233333322 122334444444444556677777766654332 1222 111111 11222222
Q ss_pred HHHHHHHHHHHh--------------ccC---------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 010458 331 EKAENIYDEWES--------------ISG---------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG-I 380 (510)
Q Consensus 331 ~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 380 (510)
+.....|+...+ .+. ..-..+|...+..-.+..-++.|..+|-++.+.+ +
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 222222222110 000 1122345667777777788999999999999988 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHH
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI-TAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEI 457 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 457 (510)
.+++..+++++..++ .|+..-|.++|+--+.. -||...| .-.+..+...++-+.|..+|+.....-.. -..+
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 778889999998776 57888999999987753 4555544 56677788999999999999976554332 3678
Q ss_pred HHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 458 YNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 458 ~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
|..+|..-..-|+ .+..+-++|.. +.|...+..++.+-+.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 9999999999999 66777777765 4577777766666554
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0041 Score=54.53 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++..+......+...|++++|.+.|+.+....|+. ...-.++.++.+.+++++|...+++..+....-....|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34444445555566777777777777777766542 22244556677777778887777777765422222233333
Q ss_pred HHHHHh--CC---------------C---cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 182 LNLYIS--NG---------------Q---LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 182 ~~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
+.+.+. .+ + ..+|++.|+++. .-|-...-..+|...+..+... +
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li--------------~~yP~S~ya~~A~~rl~~l~~~-l- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV--------------RGYPNSQYTTDATKRLVFLKDR-L- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH--------------HHCcCChhHHHHHHHHHHHHHH-H-
Confidence 433331 10 0 011222222222 2222222333444333333211 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
...--.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|.++...+
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0011134555666677777777777766652 1222334455666666666666666655544
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00032 Score=63.13 Aligned_cols=284 Identities=16% Similarity=0.075 Sum_probs=134.5
Q ss_pred HHHHHhccChHHHHHHHHHHHHccC--cccChhhHHHHHHHHHHhcChhhHHHHHHhcc-------cCCCChhhHHHHHH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYD--IKLVSGDYAVHLDLISKIRGLSSAENFFENLP-------DKMRGPDTCSALLH 148 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~ 148 (510)
..-+|+.|+....+.+|+...+.|. +..-...|..+..+|...+++++|.++...=. ..--...+...|..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567888999999999998888751 11122346667777777888888888643211 11112445556666
Q ss_pred HHHhCCCHHHHHHHHHH----HHhCCCC-CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 149 SYVQNKKSAEAEALMEK----MSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~----~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
.+-..|.+++|+-.-.+ ..+.|-. .....+-.+...|...|+.-... .+.+...++.=+ ..
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pee~g~f~~ev-----~~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APEEKGAFNAEV-----TS 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------ChhhcccccHHH-----HH
Confidence 77777888887655332 2333311 12334555666666555421100 000000000000 00
Q ss_pred CHHHHHHHHHH----HHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----ccCC-CChhhHHHHHHHHHhcC
Q 010458 224 DKETAEKAFLE----LKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEK----RTCR-KNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 224 ~~~~a~~~~~~----m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~ 293 (510)
.++.|.++|.+ +.+.|- -.--..|..|.+.|.-.|+++.|+..-+.-.. .|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 12222233222 111110 00112344455555555666666554432211 1111 11234555666666666
Q ss_pred CHHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCCCcchHHHHHHHHHhcC
Q 010458 294 YKDEVLRIWKKMMSLFAK-----MNDAEYTCVISSLVKLGEFEKAENIYDEWESI-----SGTGDPRVPNILLAAYINRN 363 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 363 (510)
+++.|.+.|+.-...-+. ....+..++...|.-..++++|+.++..-... ...-....+-+|..+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 666666666554322111 11223445555555555666666555442210 01112344555666666666
Q ss_pred CHHHHHHHHHHH
Q 010458 364 QLEMAESFYNRL 375 (510)
Q Consensus 364 ~~~~A~~~~~~~ 375 (510)
..++|+.+.+.-
T Consensus 330 ~h~kAl~fae~h 341 (639)
T KOG1130|consen 330 EHRKALYFAELH 341 (639)
T ss_pred hHHHHHHHHHHH
Confidence 666665554443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00039 Score=64.93 Aligned_cols=100 Identities=10% Similarity=-0.050 Sum_probs=78.4
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 156 (510)
...+...|++++|++.|+++.+.. |.++..|..+..++...|++++|+..++.+....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 455667788889999998888875 66778888888888888899999888888888776 467788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++|+..|+...+.+ |+.......
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHH
Confidence 88888888888765 554444333
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=0.00012 Score=49.81 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=49.7
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.+.|++++|+++|+.+.+.. |.+...+..+..++.+.|++++|.++++.+....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46788899999999988875 6788888888899999999999999999988887774444433
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00047 Score=50.31 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRN--------QLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
.|..|...+++.....+|+.+++.++ .|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444555666666666666666666 666666666666655432 233455566666666666666666666
Q ss_pred HHHHHh
Q 010458 391 TWGYLK 396 (510)
Q Consensus 391 ~~~~~~ 396 (510)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.00075 Score=53.25 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
+...+...|++++|.++|+.+...+| +..-|..|.-++-..|++++|+..|......++ -|+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 33344444555555555554444433 234444444444445555555555554444442 2444444444455555555
Q ss_pred CcHHHHHHHHHhC
Q 010458 192 DKVPQMLQELKKN 204 (510)
Q Consensus 192 ~~a~~~~~~~~~~ 204 (510)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.0012 Score=52.18 Aligned_cols=89 Identities=6% Similarity=-0.111 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
..-+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|+..|.......+ -+...+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 33344444444444444444444332 333444444444444444444444444444321 1233344444444444444
Q ss_pred HHHHHHHHHHH
Q 010458 331 EKAENIYDEWE 341 (510)
Q Consensus 331 ~~a~~~~~~~~ 341 (510)
+.|.+.|+..+
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00053 Score=50.05 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHccCCCChhhHHHHH
Q 010458 216 LAACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKME--------LPEKAATTLKEMEKRTCRKNRVAYSSLL 286 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 286 (510)
|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444666666666666666665 566666666655554432 2233444555555555555555555555
Q ss_pred HHHH
Q 010458 287 SLYT 290 (510)
Q Consensus 287 ~~~~ 290 (510)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0037 Score=56.56 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=22.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 284 SLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 284 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
.+...|-.. |++++|++.|++....-...+ ...+..+...+.+.|++++|.++|+++.
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444 555555555555433210000 0123334444444455555555554444
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0057 Score=55.31 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC---CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+..+...+.+.|++++|.++|++....... .+.+.. .+...+-++...|+...|.+.+++.....|
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455556666666666666655542101 111221 222333344555666666666666655543
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.023 Score=55.18 Aligned_cols=367 Identities=9% Similarity=0.022 Sum_probs=183.3
Q ss_pred CCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HhccChHHHHHHHHHHHHcc
Q 010458 36 GGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVREL----------RKLKRYKHALEVCEWMELQY 101 (510)
Q Consensus 36 ~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------~~~~~~~~a~~~~~~~~~~~ 101 (510)
..|.+-.|++++...-. +.|...|-+. |..+.......|-..+ +-.|++++|.++|-++-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc---~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRC---GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhh---ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 44556667776643222 5555555443 3333332222222222 22478888888887776553
Q ss_pred CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH
Q 010458 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178 (510)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 178 (510)
..+....+.|++-...++++.-.....| ...|+.+...+.....+++|.+.|..-.. -
T Consensus 765 ----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 ----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred ----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 5567777888888877777764433222 46788888888888888888887764322 1
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
...+.++.+..++++...+...+ +.+....-.+..++.+.|.-++|.+.|-+. + .|. ..++.|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHH
Confidence 23456666666665554444433 334555566677777777777777666432 1 121 2345566666
Q ss_pred ChHHHHHHHHHHHHccCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCChhhHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCR-----------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF---AKMNDAEYTCVISSL 324 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~ 324 (510)
+|.+|.++-+...-..+. .+..+ ..-|..+.+.|+.-.|-+++.+|.+.. ..|-...-...+-+.
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 666666554432211000 01111 112344556666666666666664321 222222111111111
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
.-..+..++.+-.+.....|...+... +...|-..++-++.+..-. -.....|..|..-....|..+.|+
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHH
Confidence 112233344444444444443322211 1223333333344333222 113344455555555666776666
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+.--...+- ..+-|...+|..+.-+-+....+...-+.|-++..
T Consensus 1042 ~Tal~L~DY-Ed~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1042 QTALILSDY-EDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHhhhccH-hhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 544333321 24556666666665555554455544444444443
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.026 Score=51.44 Aligned_cols=272 Identities=14% Similarity=0.055 Sum_probs=151.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.++.+.-++....| ..+.+..++..|+..+....+.. |.+..-|..-+..+...|++++|.--.+.
T Consensus 43 ~~~~~~Ae~~k~~g------------n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEG------------NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred chHHHHHHHHHhhc------------chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhh
Confidence 45555555555544 35677788899999999988874 66777777777777788888887766655
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHH---------------HHHhCC-CCCCcchHHHH-HHHHHhCCCcCcH
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALME---------------KMSECG-FLKCPLPYNHM-LNLYISNGQLDKV 194 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~---------------~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~a 194 (510)
-.+..+. ...+...-.++...++..+|.+.++ .+.... -+|.-.+|..+ ..++...|+.++|
T Consensus 109 ~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 109 SVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred heecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 5444322 1222222223333333333333222 111111 11223344333 2345567888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHHhcCChH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS-------------TLTSLYIKMELPE 261 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------~l~~~~~~~g~~~ 261 (510)
.+.--.+++....+....-.-..++.-.++.+.+...|++.+..+ |+...-. .=.+-..+.|++.
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 887777776644454444433445555777888888888776553 3332211 1123345667777
Q ss_pred HHHHHHHHHHHc---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 262 KAATTLKEMEKR---TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 262 ~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+..... .+. ...|..-..++...++|++|.+-+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776654 22334445555556666667777766666555442 111 122333334445556666666666
Q ss_pred HHHHh
Q 010458 338 DEWES 342 (510)
Q Consensus 338 ~~~~~ 342 (510)
+...+
T Consensus 345 ~~a~q 349 (486)
T KOG0550|consen 345 EKAMQ 349 (486)
T ss_pred HHHHh
Confidence 66554
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0015 Score=54.19 Aligned_cols=88 Identities=13% Similarity=-0.038 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc-ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL-VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
....+..+...+...|++++|+..|++..+...-++ ....+..+...+.+.|++++|...+++.....|+ ...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344567777788888999999999998876531112 2357778888888999999999999888877663 56666777
Q ss_pred HHHHhCCCHH
Q 010458 148 HSYVQNKKSA 157 (510)
Q Consensus 148 ~~~~~~~~~~ 157 (510)
..+...|+..
T Consensus 114 ~~~~~~g~~~ 123 (172)
T PRK02603 114 VIYHKRGEKA 123 (172)
T ss_pred HHHHHcCChH
Confidence 7777777643
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=0.00011 Score=52.43 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=53.0
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
.|+++.|+.+++.+.+.....++...+..+..++.+.|++++|..+++. .+.++ +......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778888888888877641111334455567788888888888888877 33333 334445557778888888888887
Q ss_pred HHH
Q 010458 163 MEK 165 (510)
Q Consensus 163 ~~~ 165 (510)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.72 E-value=0.013 Score=50.01 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=74.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK- 326 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 326 (510)
....+...|++++|.+.|+.+....+.. -....-.++.++.+.|+++.|...++......+.-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445556666666666666666552221 1223444555666666666666666666554322111112222222111
Q ss_pred ------------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 327 ------------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 327 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+...+|...|+.+++ -|=...-..+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1112233333333332 222222333333333333221 001111245556
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 440 (510)
.+.|.+..|..-++.+++..++.+........++.++.+.|..+.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 6777777777777777664222222234455666666666666644
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00097 Score=60.03 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356666666666666777777777776432 1233344443333222 45555577777777766666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776554 22222 36777777777777777777777777664
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.062 Score=52.89 Aligned_cols=341 Identities=14% Similarity=0.136 Sum_probs=191.0
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC---hhhHHHHHHhccc
Q 010458 64 EEGHTVHKYELN-----RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFENLPD 135 (510)
Q Consensus 64 ~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 135 (510)
+-|++.+..-|. .+|.-+...+.+..|+++..++.... ......|......+.+..+ .+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 347888777775 56777888899999999998886432 1124566666666665532 2223333333333
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL----KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.-.+...|..+......+|+++-|..+++.=...+.. -+..-+...+.-+...|+.+-...++-.+.... +...
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s~ 580 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRSS 580 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHHH
Confidence 2224567788888788899999998887642221100 112223444455556666666666666555430 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHH----HccCCCChhhHHH
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK--EME----KRTCRKNRVAYSS 284 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~----~~~~~~~~~~~~~ 284 (510)
.+....+.-.|..+|.+..+ .+- .+ +- .+.+.++-.++...|. ... ..+..|+ ...
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~----~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDR----AT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhch----hh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 11122334455555555432 221 11 11 1222222222222221 100 0122222 223
Q ss_pred HHHHHHhcCCHH----------HHHHHHHHHHH-hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH
Q 010458 285 LLSLYTNMGYKD----------EVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353 (510)
Q Consensus 285 l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
..+.+.+..... +-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -||-..|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 334444433311 11222222222 1333444556666667778899999988887766 67888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.=+.+++..+++++-+++-+... .+.-|..++.+|.+.|+.++|.+++.+.-. .+ -...+|.+
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~ 782 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLR 782 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHH
Confidence 88889999999887766654433 245677788899999999999988876542 11 45677888
Q ss_pred cCCHHHHHHHHHH
Q 010458 434 QGDIDGAEHLLVT 446 (510)
Q Consensus 434 ~g~~~~A~~~~~~ 446 (510)
.|++.+|.++--+
T Consensus 783 ~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 783 VGDVKEAADLAAE 795 (829)
T ss_pred hccHHHHHHHHHH
Confidence 8888888766443
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.004 Score=49.96 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=103.1
Q ss_pred CccHHHHHhhhcccC-CcHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHH
Q 010458 38 RDTLGRRLLSLVYAK-RSAAITMRKWKEE-GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115 (510)
Q Consensus 38 ~~~~~~~l~~~~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (510)
....+|.-...++.. ..+.-.+--|+.+ +..-. -..+..+..+.=+++...+-..+-.. ..|+......+..
T Consensus 24 hqe~YWlfIif~Fp~iG~VaYfvav~LPEl~~~R~---a~~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~ 97 (251)
T COG4700 24 HQERYWLFIIFCFPVIGCVAYFVAVMLPELGADRH---AHTLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLAN 97 (251)
T ss_pred cchHHHHHHHHHhcccchhhHHHHHhhhHhcccch---hHHHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHH
Confidence 445566666666555 3333333333322 21111 22233333444444444333322222 2355666667777
Q ss_pred HHHHhcChhhHHHHHHhcccC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhCCCcC
Q 010458 116 LISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~ 192 (510)
.+.+.|+..+|...|++.... ..|+.....+.++....+++..|...++++.+.... .++.+.-.+.+.+...|++.
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 778888888888888776654 135667777777777778888888888777765410 13344556667777788888
Q ss_pred cHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 193 ~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
+|..-|+..... ..|....| ....+.+.|+.+++..
T Consensus 178 ~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~a 214 (251)
T COG4700 178 DAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHH
Confidence 888888777665 22222222 2334445565544443
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0019 Score=58.08 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-LGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
|..+++..-+.+..+.|..+|.++.+. ...+..+|......-.. .++.+.|.++|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444444444444445555555544422 11122223222222112 33333445555444432 2233444444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..|+.+.|..+|++.... + |.. ..|...+..-.+.|+.+.+.++.+++.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444433 1 111 244444444444444444444444444
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0021 Score=53.16 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444555555555555554432111 122444455555555555555555555444
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00045 Score=59.86 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=83.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCC
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGD 436 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 436 (510)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+.++. +.|. ..+|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 355678888888888888887544 677778888888888888888888888874 3443 5588888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+++|.+.|++..+.+|.+...++.|-.+-.+.+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888877666666555554444
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0032 Score=51.97 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+..++..+...|++++|...|++.......| ...++..+...+...|++++|+..++++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555556666666666666665442222 123556666666666666666666666664
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.016 Score=46.71 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHH
Q 010458 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---KPCYTTWE 388 (510)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~ 388 (510)
|+...-..+..++...|+..+|...|++...--+..|....-.+..+....++...|...++++-+.++ .|| +--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 333334445555555555555555555555332334444455555555555555555555555554321 222 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.+.+...|.+.+|..-|+.+.+ .-|+...-......+.++|+..++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555666666666665553 24454444444444555555554443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.0057 Score=46.54 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....++-.-+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777766655433 2244455566666777777777777666531000002222233344566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
..|+.++|...+-..... ....|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE---TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 667777777666554432 1224544444443
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=0.0001 Score=40.92 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877663
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.0004 Score=46.71 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...+...|++++|.+.|+++++. .+-+...+..+..++...|++++|...|+++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34455566666666666666643 1224455566666666666666666666666555544
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0061 Score=59.68 Aligned_cols=68 Identities=21% Similarity=0.085 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+...|..+.......|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++....+|.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4456666666666678888888888888854 5677778888888888888888888888888777764
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0051 Score=60.20 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
..|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|.+.+++..+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444455555555555555553 23444555555555555555555555555544
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=0.00011 Score=40.83 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.0018 Score=58.51 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWES----ISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLV----TKGI-KPCYT 385 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~p~~~ 385 (510)
.|..+...|.-.|+++.|+...+.-.+ .|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555555566677766655443221 1111 122345556666666777777776666533 2221 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGS---VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
+.-+|...|.-..++++|+.++.+-+.- +....-....+.+|..++...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455666666666777777766654431 00122234566667777777777777776665543
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.0026 Score=51.16 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHHHH
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQKVL 494 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~~l 494 (510)
+...++..+...|++++|..+++.+...+|.+...|..+|.+|...|+ .|.+.|+++. +.|+.|+..|-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 455666778889999999999999999999999999999999999999 8888887763 46999999886654
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00021 Score=48.14 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
..+...|++++|+..|+.+.+..|+ +..+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555554444442 34444444455555555555555554443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00032 Score=47.72 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
..|++++|++.|+++... .+-+..+...+..+|.+.|++++|..+++++....+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345555555555555542 2224444455555555555555555555555554444
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0092 Score=50.80 Aligned_cols=130 Identities=16% Similarity=0.070 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HH
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-----LT 251 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----l~ 251 (510)
.+.++..+.-.|.+.-...++.++.+.. +.++.....+++.-.+.||.+.|...|+...+..-..|..+++. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555666666667777666664 33666666677777777777777777775543322223333322 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..|.-++++..|...+.++...+.. |+...|.-.-+..-.|+...|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677777777766665443 4444554444444566777777777777664
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0048 Score=53.99 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=58.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC-CChhhHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCCCCcchHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM-RGPDTCSALLHSYVQN---KKSAEAEALMEKMSECGFLKCPLPYN 179 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~ 179 (510)
|.|...|..+..+|...|+.+.|...|.+..+.. +++..+..+..++... ....++..+|+++...+.. |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 5566666666666666666666666666665553 3455555555444332 2234566666666654421 444555
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
.|...+...|++.+|...++.|.+..+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 5555666666666666666666665444
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0039 Score=55.10 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
|...+..+.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+++..++.+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444455777777777777776532211 2355566677777777777777777777542222223455555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
++...|+.++|..+|+++.+..|.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6777777777777777777766654
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.48 E-value=0.0019 Score=57.07 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHH
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSAL 146 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l 146 (510)
|...+..+.+.|++++|+..|+.+.+.. |.+ +..+..++..+...|++++|...|+.+....|+ +..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444455567777777777766653 322 346666667777777777777777766655443 4455555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
...+...|+.++|..+|+.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556666677777777777666543
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.47 E-value=0.036 Score=47.29 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
..+-.....+...|++++|...|+.+....+... ....-.++.++.+.|+++.|...++...+..+.....-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3444556667788999999999999987643221 23466677888899999999999999887654433333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKP-----CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+.+......... .....+ -...+..++.-|-.+....+|...+..+.+. =...-..+...|.
T Consensus 86 g~~~~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~------la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR------LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 332211111110 000000 0123445555555566666666666555432 1122234677899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCC
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVS---TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 470 (510)
+.|.+..|..-++.+.+.-|.+ ......++.+|.+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987764 3678888999999888
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.0006 Score=46.51 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCC
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAG 451 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 451 (510)
...|..+...+...|++++|+..|+++++. .+-+...+..+..++...| ++++|.+.+++..+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555666666666666666666666642 1223445555666666666 4666666666655543
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00036 Score=47.66 Aligned_cols=64 Identities=14% Similarity=-0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccC
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDK 136 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 136 (510)
+..|..+...+...|++++|+..|+...+.+ |.++..+..+..++...| ++++|++.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455666666666666666666666666654 445556666666666666 466666666655443
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.42 E-value=0.0012 Score=54.67 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 010458 207 PDVVTYNLWLAACASQ-----NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAAT 265 (510)
Q Consensus 207 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~ 265 (510)
.+..+|..++..+.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3667777777776543 667777778888888888888888888887765421 2344556
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
++++|...|+.||..++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666655444
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.016 Score=50.85 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCChhhH
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKNRVAY 282 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 282 (510)
+.|...|-.|..+|...|+++.|..-|....+.. .++...+..+..++..+. ...++..+|+++....+. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3355555555555555555555555555544432 223333444433333221 234455555555554333 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 283 SSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555553
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.0076 Score=45.87 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCCcCcHHHHHHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 202 (510)
+-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444432221 1122333333444444444444444433
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.19 Score=49.26 Aligned_cols=356 Identities=9% Similarity=0.002 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc--------ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL--------VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
.|.+..|..+.......-.++.|...|-....-.|+.. +.+.-. ...-+--|++++|++++-++..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchh---
Confidence 68889999999988888888888888776654433321 111111 12223348999999999888766
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGF--LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 217 (510)
...|..+.+.|++-...+++..--. +. ..-..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHH
Confidence 3345666777888777666543111 10 011246888899999989999999998865321 34567
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
++.+..++++-+.+-..+ +-+....-.+..++...|.-++|.+.|-+-.. | ..-+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 777777777766655544 33445566778888888888888877654321 1 134566677777777
Q ss_pred HHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CCCcchHHH-HHHHHHhc
Q 010458 298 VLRIWKKMMSLFA-----------KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG---TGDPRVPNI-LLAAYINR 362 (510)
Q Consensus 298 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~-l~~~~~~~ 362 (510)
|.++-+...-..+ -.+.. ..-.|..+.+.|..-+|-+++.+|.+... .|-...-.. ++.++ -.
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-Lv 974 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LV 974 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HH
Confidence 7776554311000 00111 12234556778887777777777765322 222221111 11111 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+..++.+-.+.....|...+... +...+-..++-++.+..-. -.....|..+..--...|.++.|.+
T Consensus 975 E~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-----gAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 975 ENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-----GAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHhchHHHHHH
Confidence 234445555555555555433221 2334444555555554433 1234445555555667788888887
Q ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHHcC
Q 010458 443 LLVTLRNAG--HVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 443 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g 469 (510)
.--.+.... .++.++|..|.-+-+...
T Consensus 1043 Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1043 TALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred HHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 655554332 346677776665554433
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.14 Score=46.91 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+.+..+.-+...|+...|.++-.+.. .|+...|..-+.+++..++|++-..+... + -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 345555666677788877777766654 56777888888888888888876665432 1 1346778888888
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
.+.|+..+|..+..++. + ..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~--------~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP--------D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC--------h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888888887777631 1 23456677888888877654443
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.0031 Score=52.34 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=83.6
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 127 ENFFENLPDKMRGPDTCSALLHSYVQ-----NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
...|+.......+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 44555554444567777777777764 47888888889999999999999999999988764 3322 11111111
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
-.- .-.+-+-|++++++|...|+-||..++..+++.+.+.+..
T Consensus 112 --------------F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 --------------FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred --------------hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111 1234567899999999999999999999999999887654
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.17 Score=46.99 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 431 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
+...|++.++.-.-.-+.+..| ++.+|..+.-.+....+ +|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3456666666655555555444 56666666555555555 566655543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.085 Score=48.68 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTK---IDPDWISYSTLTSLYIK---MELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.+...++-.|....+++...++.+.+.... +......--...-++-+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333444555777777888888777775431 11112222233444555 777888888877755555556777777
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHH
Q 010458 284 SLLSLYTNM---------GYKDEVLRIWKKMMS 307 (510)
Q Consensus 284 ~l~~~~~~~---------~~~~~a~~~~~~~~~ 307 (510)
.+...|-.. ...++|+..|.+.-.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 776665321 124555555555443
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.24 Score=45.36 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
+.+..+.-+...|+...|.++-++. -.|+..-|...+.+++..++|++-.++-.. .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4444455556666666655554443 235556666667777777777665554321 223455666677777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766666551 1 133455566666666665554433
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.25 Score=45.05 Aligned_cols=296 Identities=11% Similarity=0.034 Sum_probs=164.3
Q ss_pred hhHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH--HhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 141 DTCSALLHSYV--QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 141 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
..|.+|-.+++ -.|+-..|.++-.+..+. +.-|......++.+- .-.|+++.|.+-|+.|......-..-...|.
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLy 161 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLY 161 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHH
Confidence 44555554443 356777777666554321 223444455555433 3467888888888888754111112222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCCChh--hHHHHHHHHH---
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRV--AYSSLLSLYT--- 290 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--- 290 (510)
-...+.|+.+.|.++-+..-+.-. .-...+...+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 333456777777777776644321 223456677778888888888888887665542 233322 1222222211
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-.-+...|...-.+..+ ..|+.. .-.....++.+.|+..++-.+++.+.+..+.|++. .+..+.+.|+ .+.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TAL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHH
Confidence 12244555555544443 445442 23334456777888888888888887765555432 2223334443 333
Q ss_pred HHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 010458 370 SFYNRLVT-KGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVT 446 (510)
Q Consensus 370 ~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 446 (510)
.-+++... ..++| +..+...+..+-...|++..|..--+.+. ...|....|..|.+.-.. .|+-.++..++.+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~----r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA----REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh----hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333222 11222 44555666677777788877777666665 346777777777766544 4888888888777
Q ss_pred HHhC
Q 010458 447 LRNA 450 (510)
Q Consensus 447 ~~~~ 450 (510)
..+.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.003 Score=43.60 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=40.3
Q ss_pred HHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 79 RELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
..|.+.+++++|+++++.+...+ |.++..+.....++...|++++|.+.|+...+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45666677777777777777664 556666666777777777777777777776666554
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.19 Score=46.52 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.+-..+.+++.++.-.|+.+.|.+..++|.+..++.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 445566777788888888888888888888776543
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.22 Score=42.96 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=103.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL- 327 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 327 (510)
+..-.+.|++++|.+.|+.+....+- -...+.-.++.++.+.++++.|+..+++.....+.-....|...|.+++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 44456778888888888888765221 123445566677777888888888888877764443334455555544421
Q ss_pred ------CCHHHHHHHH---HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 328 ------GEFEKAENIY---DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 328 ------~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.|...+...+ +++++. -||.. |. -+.+.-+..++..+. ..=..+.+-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-Ya---------~dA~~~i~~~~d~LA-------~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQR--YPNSR-YA---------PDAKARIVKLNDALA-------GHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHH--CCCCc-ch---------hhHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 2333333333 333322 12221 00 001111111111111 00123556788888
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.+..|..-++++++......-....+-.+..+|...|-.++|...-+-+....+.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888888888753333334456677778888888888888876666555443
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0074 Score=41.56 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.|.+.+++++|.++++.++.. .+.+...+.....++.+.|++++|.+.|++..+.+|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 455566666666666666642 22344455555556666666666666666666655543
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.093 Score=45.99 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=84.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 57 ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
+.+++|+.+-.++....-..-.......|++.+|...|+...... +.+......+...|...|+++.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344444444333323333333445566777788888777777664 455666777777777888888888887777665
Q ss_pred CCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCChhH
Q 010458 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVT 211 (510)
Q Consensus 137 ~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 211 (510)
..+.. ....-|..+.+.....+...+-...-.. | |...-..+...+...|+.+.|.+.+-.+.+. .-.|...
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 33211 1112233333333333333333333321 3 3334445555566666666666555554443 2234444
Q ss_pred HHHHHHHHHhcC
Q 010458 212 YNLWLAACASQN 223 (510)
Q Consensus 212 ~~~l~~~~~~~~ 223 (510)
-..++..+...|
T Consensus 275 Rk~lle~f~~~g 286 (304)
T COG3118 275 RKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcC
Confidence 444444444444
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.23 Score=42.71 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
.|+.-+.++.+...+++|..-++.+.+
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~ 97 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGN 97 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhcc
Confidence 344444555555555555544444433
No 218
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.12 Score=41.24 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH--
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL-- 147 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~-- 147 (510)
+...|..-++ +.+.+..++|+.-|..+.+.|.-....-............|+...|...|+++-...+.|....-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555444 3455666777777777766542222222233334455566677777777776655544333332221
Q ss_pred ---HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 148 ---HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 148 ---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 234456666666555555544332222222334445555666666666666666554
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.64 Score=46.18 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
--+.+--+.-+...|+..+|.++-.+.. -||-..|..=+.+++..+++++-.++-+... .+.-|..+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--------sPIGy~PFV 751 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--------SPIGYLPFV 751 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--------CCCCchhHH
Confidence 3445556667778899999988877665 5788899999999999999988776665543 245577788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+|.+.|+.++|.+.+.+.... .-...+|.+.|+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGD 785 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhcc
Confidence 9999999999999998776432 246667777777
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.77 E-value=0.48 Score=44.22 Aligned_cols=402 Identities=13% Similarity=0.065 Sum_probs=209.0
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhH------HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH--HH
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDY------AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS--YV 151 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~--~~ 151 (510)
.+-+++++.+|..+|.++.+.. ..++..+ +.++++|. .++.+.....+....+..| ...|..+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4457889999999999987753 2333322 23455553 3556666666666655544 3444444443 34
Q ss_pred hCCCHHHHHHHHHHHHhC--CCCCC---cc---------hHHHHHHHHHhCCCcCcHHHHHHHHHhC-CC----CChhHH
Q 010458 152 QNKKSAEAEALMEKMSEC--GFLKC---PL---------PYNHMLNLYISNGQLDKVPQMLQELKKN-TS----PDVVTY 212 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~--~~~p~---~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~~~ 212 (510)
+.+.+++|.+.+..-.+. +-.|. .. .=+..+.++...|++.++..+++++... .+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999888776654 22221 10 0145567788899999999999998877 22 378888
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 010458 213 NLWLAACASQND---------------KETAEKAFLELKKT------KIDPDWISYSTLTSLYIKM--ELPEKAATTLKE 269 (510)
Q Consensus 213 ~~l~~~~~~~~~---------------~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 269 (510)
+.++-.+.+.-- ++.+.-+.++|... .+.|.......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886655544211 12222222222211 1223333333333332221 122223333444
Q ss_pred HHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 270 MEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 270 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
-...-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+.-.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 44444444432 22233333333 5666666665554432221 1145777777888888888888888776643
Q ss_pred CCCCcchHHHH-------HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHH
Q 010458 345 GTGDPRVPNIL-------LAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLT---WGYLKKGQ-MEKVLECFKK 409 (510)
Q Consensus 345 ~~~~~~~~~~l-------~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~-~~~a~~~~~~ 409 (510)
.|+...-..+ -+..+. .-+...=..+|+.....++. ....-..++ .-+-+.|. -++|+++++.
T Consensus 328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4444432222 222221 11233334455555554332 111222232 33445555 7789999998
Q ss_pred HhhccCCCCC-CHHHHHHHH----HHHH---HcCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHH--HHHcCCChHH
Q 010458 410 AIGSVRKWVP-DHRLITAAY----NKLE---EQGDIDGAEHLLVTLRNAGHVS-----TEIYNSLLRT--YAKAGKMPLI 474 (510)
Q Consensus 410 ~~~~~~~~~p-~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~--~~~~g~~a~~ 474 (510)
++. +.| |...-+.+. ..|. ....+.+-..+-+-+.+.|+++ .+.-|.|.++ +...|+.-..
T Consensus 406 il~----ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 406 ILQ----FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHH----hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 885 333 333333222 1221 1223444445555556667653 3455666555 3456772222
Q ss_pred HHHHHHhCCCCCCHHHHHHH
Q 010458 475 IVERMQKDNVQMDAETQKVL 494 (510)
Q Consensus 475 ~~~~m~~~~~~pd~~t~~~l 494 (510)
++..+--..+.|++.+|..+
T Consensus 482 ~~ys~WL~~iaPS~~~~RLl 501 (549)
T PF07079_consen 482 YLYSSWLTKIAPSPQAYRLL 501 (549)
T ss_pred HHHHHHHHHhCCcHHHHHHH
Confidence 22223333578998888765
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.72 E-value=0.0074 Score=42.25 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PD-HRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+++.+...|...|++++|+..|+++++...... |+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666666777777777777766664311122 21 34566666777777777777777776543
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.69 E-value=0.14 Score=41.01 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|..+|+-+.-.++ .+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3445666666666665554332 23344455555555556666666665554443321 333344455555556666666
Q ss_pred HHHHHHHhh
Q 010458 404 LECFKKAIG 412 (510)
Q Consensus 404 ~~~~~~~~~ 412 (510)
...|..+.+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.65 E-value=0.3 Score=47.46 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
-++++.++|-.|+... +...++-.|++.+|.++|.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3455666666565432 33344555666666666654
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=96.62 E-value=0.12 Score=41.34 Aligned_cols=89 Identities=8% Similarity=-0.022 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (510)
.-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+. -|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345566666666666665554443 444455555555556666666666655544322 13333334444555556666
Q ss_pred HHHHHHHHHHh
Q 010458 332 KAENIYDEWES 342 (510)
Q Consensus 332 ~a~~~~~~~~~ 342 (510)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66665555553
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.028 Score=48.67 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcc-CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQY-DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALL 147 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~ 147 (510)
.|+.-+.. .+.|++..|...|....+.. .-+..+..+..++..+...|+++.|...|..+.+..|+ ++.+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 34555666666666665542 11234455666666666666666666666666555432 45566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0094 Score=36.12 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
.++..+...|...|++++|.++|+++.+..|.++..|..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778888889999999999999998888888888776653
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.011 Score=41.44 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----cCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KN-RVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444332 100 11 233444444555555555555555443
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.02 Score=45.90 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
..++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444555555555555555554443 2344555555555555555555555555543
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.14 Score=39.47 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
..++..++.++++.|+++....+++..-. +.++.. ...+. ........|+..+..+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~-----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD-----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc-----------cCCCCCCCCCHHHHHHHH
Confidence 44566777777777777777776655432 221110 00000 111125788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CC-CHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAG-HV-STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~ 470 (510)
.+|+..|++..|.++++.+.+.- ++ +...|..|+.-.....+
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998886544 34 67888888887766554
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.1 Score=47.75 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
.++..+..++.+.+++..|+....+.+.. -++|+.....-..+|...|+++.|+..|+++.+..|.|..+-+.|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45677888889999999999999998873 456777888888899999999999999999999998887777777766
Q ss_pred HHHcCC---ChHHHHHHHHh
Q 010458 465 YAKAGK---MPLIIVERMQK 481 (510)
Q Consensus 465 ~~~~g~---~a~~~~~~m~~ 481 (510)
-.+..+ ..-.+|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 665554 55677777754
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.41 E-value=0.062 Score=41.83 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
..+..-.....+.|++++|++.|+.+....|- ..+...++.+|.+.++++.|...+++..+.........|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444445555666677777776666665432 44555666677777777777777777666553323334555555
Q ss_pred HHHh
Q 010458 184 LYIS 187 (510)
Q Consensus 184 ~~~~ 187 (510)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.065 Score=50.24 Aligned_cols=64 Identities=13% Similarity=-0.103 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
+...|+.+..+|.+.|++++|+..|+...+.+ |.+. ..|..+..+|...|++++|+..++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555544432 2222 1244444455555555555555444443
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.13 Score=44.59 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIK--PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
.|+.-+..+ +.|++..|...|...++..+. -....+-.|..++...|++++|...|..+.+.....+--+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355555443 456677777777777665321 11123344667777777777777777777765333333456667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.+..+.|+.++|...|+++.+.-|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 77777777777777777777766653
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.33 E-value=1.1 Score=43.40 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=110.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
+..+|..-+.--...|+.+.+.-.|+...-. +..-...|-..+.-....|+.+.|..++....+-..+..+. ...+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHH
Confidence 3456777777778888888888888876542 11122233334444444588888888877766544332222 222222
Q ss_pred HH-HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHhhccCCCCCCHHHHHHHHH---
Q 010458 358 AY-INRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVL---ECFKKAIGSVRKWVPDHRLITAAYN--- 429 (510)
Q Consensus 358 ~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~p~~~~~~~l~~--- 429 (510)
.+ -..|++..|..+++...+.- |+..-. ..-+....+.|+.+.+. +++...... .-+..+...+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~----~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG----KENNGILEKLYVKFA 447 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc----ccCcchhHHHHHHHH
Confidence 22 34678899999998888753 443321 12233345567777666 444433332 122222222221
Q ss_pred --HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 430 --KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 430 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+.-.++.+.|..++.++.+..+.+...|..+++.....+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 23345788899999999988888888888888888887775
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.08 Score=50.77 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 150 (510)
....+.+++-+-+.|.++.|+++.+.-. .-.+...+.|+++.|.++.++.. ++..|..|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHH
Confidence 3445666666666677777666543322 22345556677777766655443 456777777777
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
...|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+...... -+|....++...|++++..+
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-----~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-----DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665443 5556666666666655555555444332 13444445555566666666
Q ss_pred HHHH
Q 010458 231 AFLE 234 (510)
Q Consensus 231 ~~~~ 234 (510)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.26 E-value=0.039 Score=51.65 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=60.9
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
-|.++..++.+..+|...|++++|+..|++..+..|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788899999999999999999999999999988873 35999999999999999999999998885
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.17 E-value=0.94 Score=40.89 Aligned_cols=120 Identities=9% Similarity=0.020 Sum_probs=57.7
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHH-------HHHHhc-ChhhHHHHHHhcccC----------CCC----
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD-------LISKIR-GLSSAENFFENLPDK----------MRG---- 139 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g-~~~~A~~~~~~~~~~----------~~~---- 139 (510)
.+.|+.+.|..++.+...... ..++.....+.. .....+ +++.|..++++..+. .++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467888888888888776431 234443333333 333444 666665555443221 122
Q ss_pred -hhhHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 140 -PDTCSALLHSYVQNKKSAE---AEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
..+...++.+|...+..+. |..+++.+.... |+ +..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334445555555444432 333333333222 22 333333444444455555555555555554
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.11 E-value=0.43 Score=46.46 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHH-----HHHHHHhCCCHHHHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA-----LLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~ 164 (510)
.+.-++++.+.+..| + -..+...++-.|++.+|.++|.+--..+.-.+.|+- +.+-+...|..++-..+..
T Consensus 619 li~EL~~~k~rge~P-~---~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 619 LISELEERKKRGETP-N---DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHHHHhcCCCc-h---HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 334455555554222 2 234556777888899988888875444222222221 1222333333333322222
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH---------HHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE---------LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 165 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+-.+.. .+..-=......+...|+.++|..+.-+ +-.. ...+..+...+...+.+...+..|-++|.+
T Consensus 695 KRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 695 KRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 211110 1111112233444556666666554321 1111 223444454555555555566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
|-+ ...++......++|++|..+-+...+
T Consensus 773 ~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 773 MGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 532 12355566667777777776666554
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.07 E-value=0.84 Score=39.46 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=38.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..-.+.|++++|.+.|+.+....|. ..+.-.++-++-+.++++.|+..+++..+.-.......|...|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3334556666666666666555432 33444455556666666666666666655432222334444444444
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.02 E-value=0.5 Score=46.11 Aligned_cols=162 Identities=17% Similarity=0.071 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcch
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+..++....=.||-+.+++.+.+..+.+.--.. -.|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555667777777776665442111111 123333333332 34567777788777754 344444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 352 PN-ILLAAYINRNQLEMAESFYNRLVTKG---IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 352 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
|. .-.+.+...|++++|++.|++..... .+.....+--+...+.-..++++|.+.|..+.+. -..+..+|..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~ 345 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHH
Confidence 43 23445566778888888888655311 1122334555666677778888888888888763 22334444333
Q ss_pred HH-HHHHcCCH-------HHHHHHHHHHH
Q 010458 428 YN-KLEEQGDI-------DGAEHLLVTLR 448 (510)
Q Consensus 428 ~~-~~~~~g~~-------~~A~~~~~~~~ 448 (510)
.. ++...|+. ++|.++|.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 33455666 77777777664
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.00 E-value=0.11 Score=40.07 Aligned_cols=98 Identities=6% Similarity=-0.017 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
|..++..++.++++.|+.+....+++..- |+.++...- .+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777777765543 222221100 000 1112334566666666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+|+..|++..|+++.+...+.. +++-+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y-~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKY-PIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 6666666666666666666553 2555566666665543
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.88 E-value=0.61 Score=44.06 Aligned_cols=111 Identities=9% Similarity=-0.079 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 010458 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 364 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
...+|.+..++..+.+.. |......+..+....++++.|..+|+++.. +.|| ..+|......+.-.|+.++|.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666777777776543 666666676666777778888888888874 3555 3455555666677788888888
Q ss_pred HHHHHHhCCCC--CHHHHHHHHHHHHHcCC-ChHHHHHHH
Q 010458 443 LLVTLRNAGHV--STEIYNSLLRTYAKAGK-MPLIIVERM 479 (510)
Q Consensus 443 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~-~a~~~~~~m 479 (510)
.+++..+..|. -..+....++.|+..+- .|+.++-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 88888777775 34455555667777766 677665543
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
+......|+-+...+++..+.+...+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444444434444444445555555555555555555554444
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.79 E-value=0.14 Score=49.17 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=77.1
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHH
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
.-.++++++.++.+.-.-.+ ..+......++..+-+.|..+.|+++..+- ..-.+...+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDP----------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------HHHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------HHHhHHHHhcCCHHHHHH
Confidence 34566666655554211111 112444566666666667766666654331 123344556667666665
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
+.++. ++...|..|.....+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+.....|-
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 54321 245566666666666676666666666543 244555556666666666666555554441
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
++....++.-.|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444455555666666555544
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.74 E-value=0.12 Score=45.66 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh-----CCCCCCHHHHHH
Q 010458 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK-----DNVQMDAETQKV 493 (510)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~-----~~~~pd~~t~~~ 493 (510)
..++..++..+...|+.+.+...++++....|.+...|..++.+|.+.|+ .|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44567778888899999999999999999999999999999999999999 78888887654 799999999888
Q ss_pred HHhh
Q 010458 494 LKIT 497 (510)
Q Consensus 494 l~~~ 497 (510)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8876
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.56 Score=39.98 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
|...|-.+.-..|+..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3444444555566677776666533211 122344555566655 35555555444
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.71 E-value=0.97 Score=37.83 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
||--+.+-+...|+.++|..+|+-....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.64 E-value=0.11 Score=44.96 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHH
Q 010458 208 DVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAATT 266 (510)
Q Consensus 208 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~~ 266 (510)
|..+|-..+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 66667666666543 3567777778888999999999999999988764432 23457888
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCH
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (510)
+++|...|+.||..+-..+++++.+.+-.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999988999988876653
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.17 Score=46.36 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
++..+..++.+.+++..|++..++.+...++|+...-.-..++...|+++.|+..|+++.+.. +.|...-+.++.+..+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQK 337 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 456666677777777777777777777777777777777777777777777777777776653 2233344444444444
Q ss_pred cCChH-HHHHHHHHHHHc
Q 010458 257 MELPE-KAATTLKEMEKR 273 (510)
Q Consensus 257 ~g~~~-~A~~~~~~~~~~ 273 (510)
..... ...++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 44333 335666666543
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=0.87 Score=36.05 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..++..+...+.......+++.+...+. .+....+.++..|++.+. ++....++. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3444445555555666666665555442 345555666666654432 222233221 1 1223334455555666
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
+.++++.-++.++-. +...+..+... ++++.|.+++++ ..+++.|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666655421 11122222222 556666665554 124556666665554
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.60 E-value=1.7 Score=41.43 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
-..+..++.+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345666667778888888888888764322 133356677788888888888888887764
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.55 E-value=0.77 Score=35.04 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV---PNILLAAYINRNQLEM 367 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 367 (510)
-.|..++..++..+..... +..-++.+|.-....-+-+-..+.++.+-+ -.|... ...++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence 3566777777776665532 334455555444444444444444444432 222222 1223333333322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
+.......+......|+-+.-.+++....+ +-.+++.....+..+|.+.|+..++.+++.++
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKK---NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 334445556666777777777777777664 34567777777788888888888888888888
Q ss_pred HhCCCC
Q 010458 448 RNAGHV 453 (510)
Q Consensus 448 ~~~~~~ 453 (510)
.+.|..
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 777754
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.48 E-value=1.1 Score=43.91 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
-+...+.-..++++|...|..+.+.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3444455555555555555555543
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.47 E-value=0.48 Score=37.01 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCc-ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDI-KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCSALLH 148 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~ 148 (510)
..+-.-.....+.|++++|.+.|+.+..+-.. +....+...++.++.+.+++++|...+++..+..|+ ..-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33344445566889999999999999886311 224456677888999999999999999998888764 233444444
Q ss_pred HHH
Q 010458 149 SYV 151 (510)
Q Consensus 149 ~~~ 151 (510)
+++
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 444
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.47 Score=42.39 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=81.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKET 227 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 227 (510)
..|++.+|-..++++.+. .+.|..+++..=.+|...|+.+.-...++++...-.+|. ..-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666653 334556666666666666766666666666655422222 222333344455666777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR---KNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
|++.-++..+.+ +.|.-.-.++.+.+--.|++.++.+++.+-...=-. .-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 766666665543 334445555666666666666666665544332000 0011122223334455666666666654
Q ss_pred H
Q 010458 305 M 305 (510)
Q Consensus 305 ~ 305 (510)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.37 E-value=0.22 Score=37.75 Aligned_cols=90 Identities=12% Similarity=-0.047 Sum_probs=67.6
Q ss_pred HHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CCC----hhhHHHHHHHHHhC
Q 010458 79 RELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MRG----PDTCSALLHSYVQN 153 (510)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~ 153 (510)
-++...|+.+.|++.|.+.... .|..++.|+.-.+++.-.|+.++|++-+++..+. ++. -..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567788899999999888775 3778888988888888888888888888877665 222 23344444567778
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010458 154 KKSAEAEALMEKMSECG 170 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~ 170 (510)
|+.+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888877766
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.33 E-value=1.7 Score=37.58 Aligned_cols=204 Identities=20% Similarity=0.136 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666655555431 122234445555555555555666666666555432222 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 323 -SLVKLGEFEKAENIYDEWESISG--TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399 (510)
Q Consensus 323 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 399 (510)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543111 011222222333344566666666666666654211124555666666666666
Q ss_pred HHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 400 MEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
++.+...+..+... .|+ ...+..+...+...|..+++...+.+.....+
T Consensus 218 ~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777766642 333 33344444444455566777766666665544
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.30 E-value=1.8 Score=39.27 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=135.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--cCCCC---hhhHHHHHHHHHh
Q 010458 219 CASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKN---RVAYSSLLSLYTN 291 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 291 (510)
+....+.++++..+.+....- ...--.++..+..+.++.|.+++++..--.-++. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888777754321 1112345666777888888877766543222211 11111 2345555556555
Q ss_pred cCCHHHHHHHHHHHHHh-cCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhc
Q 010458 292 MGYKDEVLRIWKKMMSL-FAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----TGDPRVPNILLAAYINR 362 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 362 (510)
..++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544332 1222 112344566777778888889888888765221 12345688888888888
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhccCC-CCCCH----HHHHHHH
Q 010458 363 NQLEMAESFYNRLVT----KGIKPCYTTW-----ELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPDH----RLITAAY 428 (510)
Q Consensus 363 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~p~~----~~~~~l~ 428 (510)
.++++|.-+..+..+ .++..-..-| -.|..++-..|....|.+.-+++.+. . ..-|. .....+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl--al~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL--ALQHGDRALQARCLLCFA 253 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH--HHHhCChHHHHHHHHHHH
Confidence 899988877766554 3332111122 23445667788888888888887653 2 12232 3345667
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~ 448 (510)
+.|...|+.+.|..-|++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 77888888888887777764
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.29 E-value=1.1 Score=35.40 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444555555555555554442 24445555555555432 2223333321 1122333344444555555
Q ss_pred HHHHHHHHHH
Q 010458 330 FEKAENIYDE 339 (510)
Q Consensus 330 ~~~a~~~~~~ 339 (510)
++++..++.+
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.86 Score=40.79 Aligned_cols=156 Identities=10% Similarity=-0.067 Sum_probs=105.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH----HHHHHHHhCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN----HMLNLYISNG 189 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 189 (510)
..+-..|+..+|-..++++.+..| |...++-.=++|.-.|+.+.-...++++... ..||...|. .+.-++...|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 334456788888888888887766 4566666677888888888888888887653 124543332 3334455788
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
-+++|.+.-++..+.++.|..+-.+....+-..+++.++.+++.+-...--..+ ...|=...-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 889998888888877777888888888888888888888888766432211100 11122233355667888899998
Q ss_pred HHHHH
Q 010458 267 LKEME 271 (510)
Q Consensus 267 ~~~~~ 271 (510)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87543
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.25 E-value=0.05 Score=32.86 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 113 (510)
+|..+...|.+.|++++|.++|+.+.+.. |.++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45666667777777777777777776654 5555555444
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=2 Score=37.98 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=93.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455678888888888888765433 3555667788888888888888888877654222222222223334444444444
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCC
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH--VSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 470 (510)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+. .+...-..|+..+.-.|.
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444332 33777778888888999999999888877765544 467778888888877774
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=95.23 E-value=1.7 Score=41.17 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=85.8
Q ss_pred CcHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhc---------cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc
Q 010458 53 RSAAITMRKWKEE-GHTVH-KYELNRIVRELRKL---------KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121 (510)
Q Consensus 53 ~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 121 (510)
..|..+|.+.... ...|+ ...|..+...+... ....+|.+..+...+.+ +.|+.....+..+..-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhc
Confidence 6666677776621 22332 33444443333221 23345667777777765 667777777777777777
Q ss_pred ChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhCCCcCcHHHH
Q 010458 122 GLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~ 197 (510)
+++.|...|++....+|| ..+|......+.-.|+.++|.+.+++..+.. |... .....++.|+. ...+.|+++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 888888888888887776 4555555555666788888888888866654 3221 12222334443 345666666
Q ss_pred HHH
Q 010458 198 LQE 200 (510)
Q Consensus 198 ~~~ 200 (510)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.13 E-value=0.42 Score=36.28 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHc
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQ 434 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~ 434 (510)
++...|+++.|++.|.+.+..-+ -....||.-..++--.|+.++|++-++++++.. |-+ +. ..|.--...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-Ccc-chHHHHHHHHHHHHHHHh
Confidence 44566777777777777766432 255667777777777777777777777777641 111 11 1233333456677
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 010458 435 GDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~ 453 (510)
|+-+.|..-|+..-+.|.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 7888888888777776653
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.12 E-value=0.39 Score=43.35 Aligned_cols=198 Identities=11% Similarity=-0.010 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcChhhHHHHHHh----cccCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC---CcchH
Q 010458 110 YAVHLDLISKIRGLSSAENFFEN----LPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSEC-GFLK---CPLPY 178 (510)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~----~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~ 178 (510)
+..+..+.++.|++++++..--. ..+.. .--..|..+..++-+.-++.+++.+-..-... |..| -....
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 33445555666666655443211 11111 11344555555555555555555554433321 1111 01223
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhC----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKN----TSP--DVVTYNLWLAACASQNDKETAEKAFLELKK----TKIDPDWISYS 248 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~ 248 (510)
.++..++...+.++++++.|+...+- ..| ...+|..+...|.+..|+++|.-+..+..+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666777777777766543 122 345677777778888888777766555422 22211111222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHHc----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 249 -----TLTSLYIKMELPEKAATTLKEMEKR----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 249 -----~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
.|.-++...|+..+|.+.-++..+. |-.+ .......+.+.|-..|+.+.|+.-|++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2334556677777777776665443 2111 123344566777778888887777766543
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.06 E-value=1.5 Score=41.84 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
..++..-++.-+++.+ +.|+..+...++ +--......++++++++..+.+-. .+..- ......|. .
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~ 246 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------F 246 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------h
Confidence 3445555555555554 344443322222 223345678888888887764311 00000 00001111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++....+...|-...=..+..++-+.|+.++|++.++++.+.. ...-+..+...|+.++...+.+.++..++.+..+..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1222222222333333457777788999999999999998641 111234577899999999999999999999986654
Q ss_pred CC-C-HHHHHHHHHHHHHcCC
Q 010458 452 HV-S-TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 452 ~~-~-~~~~~~l~~~~~~~g~ 470 (510)
.+ + ...|+..+-.+...|+
T Consensus 326 lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred CCchHHHHHHHHHHHHHhhcc
Confidence 44 2 4557776654444443
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.03 E-value=2.6 Score=38.07 Aligned_cols=226 Identities=15% Similarity=0.059 Sum_probs=114.6
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHH-----HHHHHHHHHhcC-ChHHHHHHHHHHHHc--------cCCCCh----
Q 010458 220 ASQNDKETAEKAFLELKKTK--IDPDWIS-----YSTLTSLYIKME-LPEKAATTLKEMEKR--------TCRKNR---- 279 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~-----~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 279 (510)
.+.|+.+.|..++.+..... ..|+..- +-.........+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777654322 1222111 111223333445 777777666655443 112222
Q ss_pred -hhHHHHHHHHHhcCCHH---HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 280 -VAYSSLLSLYTNMGYKD---EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 280 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 34566777777766644 466666666554322 34455556666767888888888888888642 2123344444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhCCCCCCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHhhccCCCCCCHH
Q 010458 356 LAAYIN--RNQLEMAESFYNRLVTKGIKPCYT-TWELL-T---WGYLKKGQ------MEKVLECFKKAIGSVRKWVPDHR 422 (510)
Q Consensus 356 ~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~~~------~~~a~~~~~~~~~~~~~~~p~~~ 422 (510)
+..+.. ......+...+..+....+.|... ....+ + ......++ .+...+++....+. .+.+.+..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCCHH
Confidence 444421 223355666666666544444443 11111 1 11112111 33444444433221 12333433
Q ss_pred HHHHHH-------HHHHHcCCHHHHHHHHHHHH
Q 010458 423 LITAAY-------NKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 423 ~~~~l~-------~~~~~~g~~~~A~~~~~~~~ 448 (510)
+-.++. ..+.+.+++++|.++|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333222 34567789999999888544
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=4.7 Score=41.01 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhh----HHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD----YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.....-+..+.+..-++.|+.+.+.-. .++.. +...++.+.+.|++++|...+-+....- ++ ..++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~---s~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP---SEVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch---HHHH
Confidence 345566778888888888888776532 23333 3444556668899999988877654331 11 2355
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
.-|....+..+--..++.+.+.|+. +...-..|+.+|.+.++.++..++.+....... ..-....+..+.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHH
Confidence 6666777788888888999998876 667778899999999998888777765542200 1123456677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
|..+-.+... +...... .+-..+++++|++.++.+.
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 7766554422 2223333 3445678888888887764
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=2.1 Score=36.73 Aligned_cols=206 Identities=12% Similarity=0.163 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..|..-..+|....++++|...+.+..+..- +...|. ..+.+++|.-+.+++.+.. --...|+--...|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3455555666666777777776666543211 111111 1233455555555555431 11223445555666
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHHHhcCChH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK---TK--IDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~--~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..|.++.|-..+++.-+. ....+++.|+++|++... .+ ...-...+....+.+.+..+++
T Consensus 103 E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 677666665555543221 123344445555444221 11 0011122344455566666666
Q ss_pred HHHHHHHHHHHc----cCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHH
Q 010458 262 KAATTLKEMEKR----TCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA---KMNDAEYTCVISSLVKLGEFEKA 333 (510)
Q Consensus 262 ~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 333 (510)
+|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+- .-+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665555443221 111111 2345555566667788888888887544321 11335666677665 56777776
Q ss_pred HHHHH
Q 010458 334 ENIYD 338 (510)
Q Consensus 334 ~~~~~ 338 (510)
.+++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 66553
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.91 E-value=1.3 Score=40.14 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--CC----CcCcHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCC-
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYIS--NG----QLDKVPQMLQELKKNT----SPDVVTYNLWLAACASQND- 224 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~- 224 (510)
+++...+++.|.+.|+..+..+|-+....... .. ...++.++|+.|++.. .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988887666553333322 12 2457888999998872 2344455555443 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CC--hHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 225 ---KETAEKAFLELKKTKIDPDWIS-YSTLTSLYIKM-EL--PEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 225 ---~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~-g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.+.++.+|+.+.+.|+..+... +.+-+-++... .. ...+.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3556777777777676544322 22222222221 11 346677777777777777666665554433
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=6.5 Score=41.80 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT--TWELLTWGY 394 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~ 394 (510)
|.+....+.....+++|--.|+..-+ ....+.+|..+|+|.+|..+..++... -+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33334444455566666555554321 123456666777777777666655432 1222 225666777
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
...+++-+|-++..+.... | ...+..|++...|++|.++.....+.+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-----~-----~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-----P-----EEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-----H-----HHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 7778888888877777653 1 122334566667888877766655433
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.76 E-value=2.5 Score=36.51 Aligned_cols=221 Identities=15% Similarity=0.074 Sum_probs=156.2
Q ss_pred cCChHHHHHHHHHHHHccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 334 (510)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666654322 13567778888888999999999988887653 23334556777777788888999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 335 NIYDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGI--KPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988654333 222333333 78899999999999999866322 1233444444555777899999999999999
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 412 GSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 412 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
.. ... ....+..+...+...++++.|...+.......+.....+..+...+...|. .+...+.+...
T Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 63 333 467888888999999999999999999998877645556666666665554 55656665544
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.68 E-value=4.7 Score=39.39 Aligned_cols=366 Identities=12% Similarity=0.038 Sum_probs=216.4
Q ss_pred CcHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH-HhcChhhHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKY-ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS-KIRGLSSAENFF 130 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 130 (510)
..+..++..++.. .|... -|......=.+.|..+.+..+|+..... +|.+...|...+..+. ..|+.+...+.|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 5555666666643 44444 4677777778889999999999998874 6778877777666554 456777777888
Q ss_pred HhcccC-C---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH---hC------CCcCcHHHH
Q 010458 131 ENLPDK-M---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI---SN------GQLDKVPQM 197 (510)
Q Consensus 131 ~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~------g~~~~a~~~ 197 (510)
+.+... | .....|...|..-..++++.....+|+++.+. | ...++....-|. +. ...+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 877665 3 24678888888888899999999999999874 2 222222222221 11 122232222
Q ss_pred HHHHHh--------------------CCCCC---hhHHHHHHHH-------HHhcCCHHHHHHHHHHHHhCC-------C
Q 010458 198 LQELKK--------------------NTSPD---VVTYNLWLAA-------CASQNDKETAEKAFLELKKTK-------I 240 (510)
Q Consensus 198 ~~~~~~--------------------~~~~~---~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~~~-------~ 240 (510)
-..... ...|. ....+.+... +.......+....|+.-.... .
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 222211 11111 0111111111 111112222222233222111 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
.++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+-..+ +......+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHH
Confidence 234567888888888999999999988887642 1112334555555555568888888888776665333 32222222
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH--
Q 010458 321 ISS-LVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYINRNQLEMAE---SFYNRLVTKGIKPCYTTWELLTWG-- 393 (510)
Q Consensus 321 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~-- 393 (510)
-.. .-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++....+.. -+......+.--
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHH
Confidence 222 344689999999999998654 432 22223344556788888877 3443333321 122333333322
Q ss_pred ---HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC
Q 010458 394 ---YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435 (510)
Q Consensus 394 ---~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 435 (510)
+.-.++.+.|..++.++.+ .++++...|..+++.+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~---~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEAND---ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhh---cCCccHHHHHHHHHHHHhCC
Confidence 3346889999999999997 67778888888888776655
No 274
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.67 E-value=5.9 Score=40.49 Aligned_cols=117 Identities=7% Similarity=-0.033 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHhc-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLF-AKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
..+.+.|...+....... ..+.. .....+.......+...++...++..... ..+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456678888888764432 22121 22333333333332245666666654422 22444455555555678888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
...+..|....-. ...-.--+.+++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888887653211 22233345666666888888888888874
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.62 E-value=4.4 Score=38.80 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=111.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
+.+......++..+....+.+-.+.+-.++..-+.+...|..++..|..+ ..++-..+|+++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45666667777777777777777777777777766777777888888777 556777778877776543 4444444555
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCC---C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSP---D---VVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~ 256 (510)
.|-+ ++.+++...|.+......| + ...|..+... -..+.+....+..++.. .|...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 7777777777777665333 1 1234444332 13556666666666532 3333334455555566777
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
..++++|++++..+.+.+-+ |...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 78888888888877766433 544444444433
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.65 Score=46.76 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH----HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML----NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
.....-++.+.+...++-|..+-+. .+ .+..+...++ +-+.+.|++++|...|-+-.....|. .++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHH
Confidence 3445566777777777777766443 22 2333333333 34446788888887777666554442 244
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHH
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (510)
.-|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5556666677777777777777753 44455677888888888877666555443 2111 111334555555666666
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376 (510)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (510)
+|..+-..... +......+ +-..+++++|.+.+..+.-.. -..+.+.....+. ...+++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISE---LLRTLNKYGKILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHH-hhChHHHHHHHHHHH
Confidence 66555443322 22233333 345677888888776543111 1112222222222 234455555555444
Q ss_pred hCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhh
Q 010458 377 TKGIKPCYTTWELLTW-----GYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 377 ~~~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~ 412 (510)
....++........+. ...-.+++.....+++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 4322223222222222 22334667777777776665
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.35 E-value=5 Score=38.33 Aligned_cols=391 Identities=10% Similarity=0.041 Sum_probs=186.1
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccCCCC-hhhHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDKMRG-PDTCSA 145 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~ 145 (510)
.-|+..|...+..+-+.+.+.+.-.+|..|...+ |.+++.|.....-....+ +++.|..+|.......|+ +..|..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 3488889999988877788999999999999875 667777666555544444 389999999888877765 344433
Q ss_pred HHHH---HH-h-----------CCCHHHHHHHHHH-HHhCCCCCCcch--HHH-H--HHHHHhCCCcCcH-HHHHHHHHh
Q 010458 146 LLHS---YV-Q-----------NKKSAEAEALMEK-MSECGFLKCPLP--YNH-M--LNLYISNGQLDKV-PQMLQELKK 203 (510)
Q Consensus 146 l~~~---~~-~-----------~~~~~~A~~~~~~-~~~~~~~p~~~~--~~~-l--~~~~~~~g~~~~a-~~~~~~~~~ 203 (510)
..+. |+ + .++.+ .++-.. .......++... +.. . ...........+. ..+.+.+..
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~--~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~ 257 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKD--EEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 11 0 01110 111000 000000111110 000 0 1111111111111 122333333
Q ss_pred CCCCChhHHHHHHH----HHHh---------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------C
Q 010458 204 NTSPDVVTYNLWLA----ACAS---------------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM------E 258 (510)
Q Consensus 204 ~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------g 258 (510)
..+.++.++..+.. ++.+ ..+-+....+|++..+. .|+...|+..|..|... .
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~ 335 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGK 335 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhh
Confidence 23333333322211 1111 11234455677776543 45666676666665442 2
Q ss_pred ChHHHHHHHHHHHHc-cCCC-ChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHH-H
Q 010458 259 LPEKAATTLKEMEKR-TCRK-NRVAYSSLLSLYTNMGYKDE-VLRIWKKMMSLFAKMNDAEYTCVISSLVKL-GEFEK-A 333 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a 333 (510)
.+...+.+++..... +..+ ....|..+.-.++......+ |..+..+ +...+...|..-+...... .|.+- -
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f 411 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKSDFQMLF 411 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcchhHHHH
Confidence 344555566655543 2222 23456666555555544333 3333322 2333444444444444322 12221 1
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCC-HHHH--HHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 010458 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQ-LEMA--ESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A--~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
.+++......-..+....|+... .|+ ++.. ..++..+... ..|+..++ +.++.-+.+.|-..+|...+..
T Consensus 412 ~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~ 485 (568)
T KOG2396|consen 412 EELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKS 485 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHH
Confidence 22233333221222233333332 122 2111 1122222222 23444444 4556666677777788888877
Q ss_pred HhhccCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 410 AIGSVRKWVPDHRLITAAYNK---LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 410 ~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
.... -+|+...|..++.. ...+| ...++..++.+...--.+++.|-..+.--...|. .+-.++.+
T Consensus 486 l~~l---pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 486 LQEL---PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHhC---CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHH
Confidence 7753 24455666666543 22333 6777777777754333677777777776667776 34444443
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.27 E-value=2.3 Score=34.07 Aligned_cols=69 Identities=13% Similarity=-0.015 Sum_probs=43.8
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (510)
.+.++.+++..+++.+.--. |..+..-..-...+...|++.+|+.+|+.+....|.......|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45567777777777776653 4444444455566677788888888888877665554444555544443
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.04 E-value=0.83 Score=39.85 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010458 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400 (510)
Q Consensus 366 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (510)
+-++.++++|...|+.||..+-..+++++.+.+..
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 34667788888888888888888888888776654
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.96 E-value=10 Score=40.44 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCC
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNILLAAYINRNQ 364 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 364 (510)
..+.....+++|.-.|+..-+ ....+.+|..+|+|.+|..+..++.. ..+.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445556666555554321 12345566677777777777666542 11211 12456666777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.-+|-++..+.... | .-.+..+++...+++|+++.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777777666542 1 223445566667788877766654
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.70 E-value=1.5 Score=31.70 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 388 ELLTWGYLKKGQME--KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 388 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
..--..|....+.+ +..+-+..+... .+.|++.+..+.+++|.+.+++..|.++|+-++..-......|..++.-
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~--DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGY--DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTS--SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 33333444434333 666677777765 7889999999999999999999999999998876544333367666654
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.65 E-value=5.4 Score=36.21 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHccCC---CChhhHHHHHHHHHhcCCH-
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIK--ME----LPEKAATTLKEMEKRTCR---KNRVAYSSLLSLYTNMGYK- 295 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 295 (510)
++...+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++..+- ++..++..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566667777766665555432222211 11 234566677777665321 222333333332 22222
Q ss_pred ---HHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhcC-C--HHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 296 ---DEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLG-E--FEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 296 ---~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+.+..+|+.+...|...+.. -+.+-+-+++... + ...+.++++.+.+.++++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34555666666555443332 1222222222211 1 235556666666666665555554443
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.62 E-value=1.1 Score=37.18 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.++...-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566778888888888888888888777633322 23456677777777888888777777655422222211111111
Q ss_pred -----HHHhcCCHHHHHHHHHHHH
Q 010458 323 -----SLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 323 -----~~~~~~~~~~a~~~~~~~~ 341 (510)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1234567777776665543
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.43 E-value=1.1 Score=39.80 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----ccCCCChhhHH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAYS 283 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 283 (510)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455667777777777777777777776664 45667777778888888888877777777665 26666665555
Q ss_pred HHHHH
Q 010458 284 SLLSL 288 (510)
Q Consensus 284 ~l~~~ 288 (510)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=2.8 Score=34.65 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
..+...|++++|+.-++.......| ..+--.|.+.....|.++.|+..++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3445555555555555544433211 11222334444555555555555554443221 11112222344555555
Q ss_pred cCcHHHHHHHHHhC
Q 010458 191 LDKVPQMLQELKKN 204 (510)
Q Consensus 191 ~~~a~~~~~~~~~~ 204 (510)
-++|..-|++....
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555444
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.30 E-value=9.9 Score=38.26 Aligned_cols=145 Identities=19% Similarity=0.098 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------ccCCCChhhHHHHHHHHHhc
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSL-----YIKMELPEKAATTLKEMEK-------RTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 292 (510)
...+.++++...+.|. ......+..+ +....|++.|...|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3556677766666552 2222222222 3345677777777777655 33 233455556666553
Q ss_pred C-----CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH----hc
Q 010458 293 G-----YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-LGEFEKAENIYDEWESISGTGDPRVPNILLAAYI----NR 362 (510)
Q Consensus 293 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 362 (510)
. +.+.|..++.+....|.+ +...+...+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 445566666666555422 22211111111111 13455666666666655422 11112222221 11
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010458 363 NQLEMAESFYNRLVTKG 379 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~ 379 (510)
.+.+.|..++.+..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 25566666666666655
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=20 Score=41.48 Aligned_cols=150 Identities=15% Similarity=0.042 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH----HhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 145 ALLHSYVQNKKSAEAEALMEKM----SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+..+-.+++.+.+|.-.++.- .+.. -...-|-.+...|...+++|...-+...-.. +...+. -+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHHH-HHHHHH
Confidence 4555667889999999888873 2211 1222344555589999999998887774211 222233 344456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHH-HHHHHhcCCHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL-LSLYTNMGYKDEVL 299 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 299 (510)
..|+++.|...|+.+.+.+ ++...+++-+++.....|.++......+..... ..+....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999998775 334677887787777778887777765555443 22233333322 33335666776666
Q ss_pred HHHH
Q 010458 300 RIWK 303 (510)
Q Consensus 300 ~~~~ 303 (510)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 288
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=6.6 Score=34.95 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=84.7
Q ss_pred hhHHHhhhhhcccchhh-hccccccccccCCCCCccHHHHHhh--hcccC---CcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010458 6 LGATLAAARVFSTKAAK-ITTLGLATEKKGAGGRDTLGRRLLS--LVYAK---RSAAITMRKWKEEGHTVHKYELNRIVR 79 (510)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~ 79 (510)
+++.+....+|+...+. +..+..-.. ..|..|......++. +...+ .-+..+|+.|.... ..+.++.
T Consensus 132 ~~k~Llflk~F~e~Er~KLA~~Tal~l-~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis 204 (412)
T KOG2297|consen 132 MRKFLLFLKLFEENERKKLAMLTALLL-SNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLIS 204 (412)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHH
Confidence 34555566666633322 222222222 224444444433333 11111 55556666665432 2455666
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHH
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (510)
++.+.+--+.-.++ +||+-.+-......+...|--+ -.++.+.-...+.-...-..|..-..+...+++.
T Consensus 205 ~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~e-lvey~~~q~~~~a~kElq~~L~~q~s~e~p~~ev 274 (412)
T KOG2297|consen 205 SLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKE-LVEYHRNQQSEGARKELQKELQEQVSEEDPVKEV 274 (412)
T ss_pred HHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 65554433333333 3555555444444444433111 1111111000000112222334444445556655
Q ss_pred HHHH-HHHHhCCCCCCcc----hHHHHHHHHHhCCCcCcHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 160 EALM-EKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 160 ~~~~-~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
.... ++|.+.++ |+.. .|..+|++- .|.+-.++.. +..+ ...+|.-|+.+++..|+.+..+
T Consensus 275 i~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 275 ILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
Confidence 5444 44555444 4544 466555543 3332222211 1111 2456777888888888766543
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.80 E-value=8.5 Score=36.09 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+..+++...|.++.+..+.....|..+...+.+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 777888888888888777655566655555544
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.73 E-value=2.9 Score=32.88 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.0
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 140 (510)
..++++++..+++.+.--. |..+..-..-...+...|++++|.++|+.+.+.++..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 4677777777777776543 3344444444556677788888888888877765543
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.54 E-value=2.6 Score=34.88 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH---
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS--- 284 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--- 284 (510)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+....--.+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566667777777777777777777766543332 22345566666677777777776666654311111111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 010458 285 LLS--LYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 285 l~~--~~~~~~~~~~a~~~~~~~~ 306 (510)
... .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234567777777776543
No 292
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.45 E-value=7.3 Score=34.48 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHH
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQK 492 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~ 492 (510)
++......|..+|.+.+|.++.++....++-+...|..|+..+...|+ .+..-+++|. +.|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 445566789999999999999999999999999999999999999999 7777777663 357777665543
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.25 E-value=0.46 Score=26.39 Aligned_cols=30 Identities=7% Similarity=-0.097 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.+..+..++...|++++|++.|++..+..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344555556666666666666666555443
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.21 E-value=14 Score=37.19 Aligned_cols=180 Identities=15% Similarity=0.090 Sum_probs=96.8
Q ss_pred hhhHHHHHHhcccCCCC-hhhHHHHH--HH-HHhCCCHHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhCC--
Q 010458 123 LSSAENFFENLPDKMRG-PDTCSALL--HS-YVQNKKSAEAEALMEKMSE-------CGFLKCPLPYNHMLNLYISNG-- 189 (510)
Q Consensus 123 ~~~A~~~~~~~~~~~~~-~~~~~~l~--~~-~~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g-- 189 (510)
...|.++++...+.+.. .......+ .+ +...++.+.|...|+...+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777777666432 22222222 22 4466788888888888766 44 3445666667776654
Q ss_pred ---CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChH
Q 010458 190 ---QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI----KMELPE 261 (510)
Q Consensus 190 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~g~~~ 261 (510)
+.+.|..++.+......|+....-..+.-... ..+...|.++|...-+.|.. . .+-.+..+|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHH
Confidence 33447777777666655655544333322222 24567777777777766632 2 2222222222 234667
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (510)
.|..++.+..+.| .|...--...+..+.. ++++.+...+..+...|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777765 2222222222333333 566666655555555443
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.83 E-value=0.42 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
|..|...|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555553
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.71 E-value=3.4 Score=34.48 Aligned_cols=82 Identities=11% Similarity=-0.013 Sum_probs=59.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHcCC
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-VPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~ 436 (510)
.+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.++++.++.++++....- .+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 678888888877665545555555555554 678889999999888764444 7888999999999999999
Q ss_pred HHHHH
Q 010458 437 IDGAE 441 (510)
Q Consensus 437 ~~~A~ 441 (510)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88874
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.59 E-value=13 Score=35.46 Aligned_cols=128 Identities=9% Similarity=-0.156 Sum_probs=82.8
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CCChhhHHHHHHHHHhCCC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MRGPDTCSALLHSYVQNKK 155 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 155 (510)
-|.--...|+.-.|-+-+....+. .|-+|.........+...|.++.+.+.+...... +....+...++....+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 344444567776665554444443 2456666666666777889999888887766544 3345667778888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
++.|...-+-|....++ ++..........-..|-++++...++++....+|
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99998888888776554 4443333333334556677777777777655444
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.57 E-value=0.52 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.55 E-value=0.21 Score=28.10 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=10.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSA 126 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A 126 (510)
|.++..|..+...+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444444444
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=18 Score=36.77 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.|+..|...+++.+|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36666777777777777666554
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.32 E-value=10 Score=33.69 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----hcCCCChhhH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-----LFAKMNDAEY 317 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 317 (510)
++.....|..+|.+.+|.++.+.....++- +...+-.++..+...||--.+.+-++.+.. .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 344556777788888888877777776433 666777778888888876666666665532 2555554443
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.32 E-value=13 Score=34.89 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
....+|..+.+.+.+.|+++.|...+..+...+... .......-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888888888877643222 234444455666777888888888887776
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.26 E-value=0.66 Score=25.81 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+|..+..++...|++++|...|++..+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34444445555555555555555544443
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.14 E-value=8.5 Score=32.53 Aligned_cols=183 Identities=13% Similarity=0.030 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
|-++-|.--|.+.....+. -+..||-+.--+...|+++.|.+.|+...+..+.-+-...|.-| ++.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3344444445555543222 35567777777778888888888888877643221211222222 334467787777766
Q ss_pred HHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 010458 338 DEWESISGT-GDPRVPNILLAAYINRNQLEMAESF-YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415 (510)
Q Consensus 338 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 415 (510)
...-+..+. |-...|-.+.. ..-++.+|..- .++... .|..-|...|-.|.- |++. ...+++++..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a--- 224 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKA--- 224 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHh---
Confidence 665543321 11122222221 22345555443 333332 244555544433322 2211 1223333332
Q ss_pred CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 416 KWVPD-------HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 416 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+-..+ ..||..+..-+...|+.++|..+|+-....+.-+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 11111 3567778888888899999999998887765543
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.98 E-value=0.3 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=10.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHH
Q 010458 206 SPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
|.+..+|+.+...+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.77 E-value=7.4 Score=31.23 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=9.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCC
Q 010458 431 LEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+...|++.+|..+|+++.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccC
Confidence 344445555555555544433
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.64 E-value=23 Score=36.72 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=109.2
Q ss_pred HhCCCcCcHHHHHHHHHhC-CCCCh-------hHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKN-TSPDV-------VTYNLWLA-ACASQNDKETAEKAFLELKKT----KIDPDWISYSTLTS 252 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~ 252 (510)
....++++|..+..++... ..|+. ..++.+-. .....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3466788888888877665 33221 12333322 234467778877777665432 22334555667777
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCChhhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHhc---CC---CChhhHHH
Q 010458 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-----SLYTNMGYK--DEVLRIWKKMMSLF---AK---MNDAEYTC 319 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~~ 319 (510)
+..-.|++++|..+..+..+..-.-++..+..+. ..+...|+. .+....+....... .. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877766553333443333222 223445532 22222333322211 11 11123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----ccCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWES----ISGTGDPRV--PNILLAAYINRNQLEMAESFYNRLVTKGIKP----CYTTWEL 389 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ 389 (510)
+..++.+ .+.+..-.....+ ....|-... +..|+......|+.++|...++++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444443 3332222222221 111111111 2256677778888888888888776532222 2222222
Q ss_pred HH--HHHHhcCCHHHHHHHHHH
Q 010458 390 LT--WGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 390 l~--~~~~~~~~~~~a~~~~~~ 409 (510)
.+ ......|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223346777776666655
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.47 E-value=5.1 Score=28.81 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-++.+-++.+... .+.|++.+..+.+++|.+.+++..|.++|+-++.....+...|..++.-
T Consensus 22 D~we~rr~mN~l~~~--DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGY--DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence 344666667777665 7888888888888888888888888888888774433344566666543
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=5.5 Score=35.60 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
.+...++..-....+++++...+-++.... ..|+... ...++.+ -.-+.++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 334444444444556666666655554211 1111111 1222222 2335556666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 010458 392 WGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~ 412 (510)
..+.+.+++.+|.++...|+.
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666554
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.18 E-value=43 Score=39.08 Aligned_cols=316 Identities=11% Similarity=0.027 Sum_probs=160.7
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 188 (510)
+..+-.+++.+..|...+++-..... ....|-.+...|..-+++|...-+...-.. +.. ...-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhh
Confidence 34455578888999999988422211 133444455588888998888777664111 222 33344556678
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-TSLYIKMELPEKAATTL 267 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 267 (510)
|++..|...|+.+.+..++....++-++..-...|.++...-..+-.... ..+....++.+ ..+--+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999999887777888888888777888888777766555433 22333333332 23334566666655554
Q ss_pred HHHHHccCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHHhcCCC------C---hhhHHHHHHHHHhcCCHHHHH
Q 010458 268 KEMEKRTCRKNRVAYSSL--LSLYTNM--GYKDEVLRIWKKMMSLFAKM------N---DAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a~ 334 (510)
. .. +..+|... +....+. .|.-.-.+.++.+.+.-+.| . ...|..++..+.-. +-.
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence 4 21 22333322 2222222 22222222333332221111 0 02233333322211 111
Q ss_pred HHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 010458 335 NIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNR-LVTKGIKP-----CYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~ 402 (510)
...+... +..++.. -|..-+..-....+..+-+--+++ +.....+| -..+|-...+..-..|+++.
T Consensus 1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111111 1111111 111111110001111111111111 11111111 23466667777777888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
|...+-++.+. . -+..+.-.+.-+...|+...|+.++++..+.+.+
T Consensus 1689 A~nall~A~e~--r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKES--R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhc--c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88877777764 2 3345555666778888888888888887765443
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.10 E-value=9 Score=31.11 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=95.3
Q ss_pred cCCCCCccHHHHHhhhcccC-CcHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRRLLSLVYAK-RSAAITMRKWKEEGHTVHKY-ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
...-+.+.|...|......+ ++|..-|..+.+.|...=+. ..........+.|+...|+..|+++-....+|.-....
T Consensus 54 ~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 54 RASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred ccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 33445566666555544333 99999999998876543222 23455667788999999999999998764232222122
Q ss_pred HH--HHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010458 111 AV--HLDLISKIRGLSSAENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173 (510)
Q Consensus 111 ~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 173 (510)
.. -.-.+...|.+++.....+.+...+.. ...-..|.-+-.+.|++..|..+|..+......|
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 233456889999988888887655322 4455677778889999999999999988744333
No 312
>PRK09687 putative lyase; Provisional
Probab=90.09 E-value=14 Score=33.33 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHHh
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-MPLIIVERMQK 481 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~m~~ 481 (510)
++..+-...+.++.+.|+ ..|...+-+..+.+. .....+.++...|. .|...+..+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDKTLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCHhHHHHHHHHHh
Confidence 344444445555555554 233333333333221 12344555555555 55555555543
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.04 E-value=10 Score=31.56 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCC-CC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH---
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKM-RG---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--- 180 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~--- 180 (510)
..|..++.... .+.. +.....+++.... .+ ...-..+...+...+++++|..-++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555554443 2222 3444444444442 12 122234556788899999999998877753 33344443
Q ss_pred --HHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 181 --MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 181 --l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
|.+.....|.+|+|+..++......- .......-..++...|+-++|..-|.+..+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44667788999999998887654300 12224445678888999999999999988775
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.94 E-value=0.017 Score=46.21 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCH
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (510)
+++.+.+.+.+.....+++.+...+ ...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 3455555666666666666666543 234556666666677666666666666553221 2223445555555666
Q ss_pred HHHHHHHHHH
Q 010458 157 AEAEALMEKM 166 (510)
Q Consensus 157 ~~A~~~~~~~ 166 (510)
+.|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555543
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.83 E-value=18 Score=34.47 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=77.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
|.-....|+.-.|-+-+....+..+. ++.........+...|+++.+.+.+...... +.....+..+++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567766665444444333222 3333334444556778888888887776544 444667788888888888888
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+.|...-..|....+. ++.+.....-..-..|-++++...|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888887765544 33333333333345567788888888877654
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.70 E-value=11 Score=31.47 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
..++.+.+.++.|+.-..++++. .|+ ......-..+|.+..++++|+.-|+++.+.+|.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 34444555555555555554432 221 122222233455555555555555555555544
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.62 E-value=0.81 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+|..+...|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666653
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.61 E-value=10 Score=30.92 Aligned_cols=132 Identities=8% Similarity=0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 56 AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
.+.++.+.+.+++|+...+..+++.+.+.|++.....+++. +-++++...-..++. -.+.+..+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs---~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLS---LGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHH---hHccChHHHHHHHHHHH
Confidence 44556666778888888888888888888876665555543 212223222222222 11222333332222222
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
+ =...+..+++.+...|++-+|+++....... +...-..++.+..+.+|...-..+|+-
T Consensus 87 R--L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 87 R--LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred H--hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 0113455666777777777777776654321 222234455555555554443344433
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.54 E-value=8.9 Score=30.28 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.++++++..+++.+.- +.|+. .++.. ..+...|++.+|.++|+++.+.+..
T Consensus 23 ~~d~~D~e~lLdALrv----LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRV----LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHH----hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCC
Confidence 5566666666666552 23332 23332 2355666666666666666665543
No 320
>PRK09687 putative lyase; Provisional
Probab=89.42 E-value=16 Score=32.98 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh----hhHHHHHHhcccCCCChhhH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL----SSAENFFENLPDKMRGPDTC 143 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~ 143 (510)
.++.......+..+...|. +++...+..+.+. .++......+.+++..|+. +++...+..+....+++.+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence 3455555555566655554 3333333333332 2455555555666666542 34555555543344454444
Q ss_pred HHHHHHHHh
Q 010458 144 SALLHSYVQ 152 (510)
Q Consensus 144 ~~l~~~~~~ 152 (510)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=6.9 Score=38.33 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=54.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+.. -|..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHH
Confidence 35566666655543322 34456666666666666666666666543 23445555555666555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
+-....+.|. .|....+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444442 222333556666776666665544
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.00 E-value=2.8 Score=37.77 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
-|.+.|.+++|++.|....... +.++.++..-..+|.+...+..|..-..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 3444455555555554443221 1144444444444444444444443333
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.96 E-value=0.52 Score=26.17 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=8.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 010458 146 LLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.71 E-value=12 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=11.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
+.+.+++|+...+..+++.+.+.|+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444444
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.61 E-value=2.2 Score=30.56 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHh
Q 010458 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203 (510)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 203 (510)
.+-++.+...++.|++....+.+++|.+.+++..|..+|+.++.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.49 E-value=3.4 Score=33.73 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCC-
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMRG-PDTCSALLHSYVQNK- 154 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~- 154 (510)
++.|.+.++.-...+ |.+.+.++.-..++....+ +++|+.-|+......|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 344555555544443 5566655555554443322 22333333344444454 344444444443321
Q ss_pred ---C-------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 155 ---K-------SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 155 ---~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
+ +++|.+.|+...+. .|+...|+.-+.... +|-++..++.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444445544443 366666666555542 345555555443
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=6.9 Score=38.34 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=43.0
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|....+ |..|+-.+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 4455555554444332 344455555555555555555555544322 23344444444544444444
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (510)
-....+.|.. |.-.-+|...|+++++.+++
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 3333333322 12223344445555555444
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.08 E-value=6 Score=33.09 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHhcCCH
Q 010458 280 VAYSSLLSLYTNMGYK 295 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~ 295 (510)
..+..|+..+.+.+++
T Consensus 179 eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 179 EILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHHHhcch
Confidence 3333333333333333
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.00 E-value=19 Score=32.12 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=71.5
Q ss_pred hcChhhHHHHHHhcccC---CCChhhHHHHHHHHHh-CCC-HHHHHHHHHHHH-hCCCCCCcchHHHHHHHHHhCCCcCc
Q 010458 120 IRGLSSAENFFENLPDK---MRGPDTCSALLHSYVQ-NKK-SAEAEALMEKMS-ECGFLKCPLPYNHMLNLYISNGQLDK 193 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~-~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~ 193 (510)
...+.+|+++|+..... -.|+.+...+++.... .+. ...-.++.+-+. ..+..++..+...++..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 34456677777743221 1245555556655544 221 222222223222 22345566667777777777777777
Q ss_pred HHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHH
Q 010458 194 VPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLE-----LKKTKIDPDWISYST 249 (510)
Q Consensus 194 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~ 249 (510)
..++++..... ...|...|..+|......||..-..++.++ +++.++..+...-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~ 283 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQ 283 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHH
Confidence 77777766555 223667777777777777777666666655 234444444444333
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.46 E-value=5.6 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYTTWELLTWG 393 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 393 (510)
|.+..++.+.+.+...+++...+.-++.++ .|.-.-..++..||-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345556677788888888888887776543 355666778888888999999888777666542 23344566666654
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.31 E-value=1.3 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..+..++.+.|++++|.+.|+++.+..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3445556666666666666666665444
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.27 E-value=38 Score=34.75 Aligned_cols=149 Identities=11% Similarity=0.034 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhccChHHHHHHHHHHHHcc-CcccChhh--HHHH-HHHHHHhcCh
Q 010458 53 RSAAITMRKWKEEGHTVHKYE-----LNRIVRELRKLKRYKHALEVCEWMELQY-DIKLVSGD--YAVH-LDLISKIRGL 123 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~~l-~~~~~~~g~~ 123 (510)
+.|...+++....-..++-.. -..++..+.+.+... |+..++...+.- ..+...+. +..+ +..+...++.
T Consensus 77 ~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~ 155 (608)
T PF10345_consen 77 DLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDY 155 (608)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccH
Confidence 677777766533222222221 124455555554444 777776655432 11112221 2222 2222233677
Q ss_pred hhHHHHHHhcccCC-----CChhhHHHHHHHHH--hCCCHHHHHHHHHHHHhCCC---------CCCcchHHHHHHHHH-
Q 010458 124 SSAENFFENLPDKM-----RGPDTCSALLHSYV--QNKKSAEAEALMEKMSECGF---------LKCPLPYNHMLNLYI- 186 (510)
Q Consensus 124 ~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~---------~p~~~~~~~l~~~~~- 186 (510)
..|.+.++.+.... +...++-.++.+.. +.+..+.+.+..+.+..... .|...+|..+++.++
T Consensus 156 ~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 156 NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 77777776654431 12333333333332 34545555555555522111 223345555555544
Q ss_pred -hCCCcCcHHHHHHHHH
Q 010458 187 -SNGQLDKVPQMLQELK 202 (510)
Q Consensus 187 -~~g~~~~a~~~~~~~~ 202 (510)
..|+++.+.+.++++.
T Consensus 236 l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 236 LQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 4555556555555443
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=12 Score=33.58 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244 (510)
Q Consensus 169 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 244 (510)
.|.+....+...++..-....+++.+...+-+++.. ..|+... ...++.+ -.-++++++.++..=++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 344555666666666666677788888887777655 1232222 2233333 334677888888777788999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
.++..+|+.+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888877665
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.74 E-value=6.9 Score=28.49 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444445555566666666666666666666666666655544
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.27 E-value=2.2 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 422 RLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777778888888877777654
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.07 E-value=5.1 Score=33.82 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=30.6
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
+.-++.+.+.++..+++...+.-.+.. |.+......+++.++-.|++++|..-++-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334445555555555555555444432 44555555555555555555555554444433
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.77 E-value=3.7 Score=37.08 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
..-|.++|.+++|+..|...... .| |.+++..-..+|.+...+..|..-...++.. . ..-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--D-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--h-HHHHHHHHHHHHHHHHH
Confidence 46778888888888888877765 34 7778888888888888888777777766643 1 11123444444444556
Q ss_pred CCHHHHHHHHHHHHhCCCCCHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
|+..+|.+-++...+..|.+.+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHH
Confidence 7777777777777777766433
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.26 E-value=2.6 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555555443
No 339
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.11 E-value=28 Score=31.15 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
.++..+...++..++..+++.+-.++|+..... +..-|...|..+|......||..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 334444455555555555555555555544333 23334444555555555555544443333
No 340
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.98 E-value=11 Score=31.36 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPD-----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
.-+.+.|++++|..-|..++.. .++. ...|..-..++.+.+.++.|+.-..+..+.+|........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 4467899999999999999974 3332 2345555567889999999999999999999987677777777888
Q ss_pred HcCC--ChHHHHHHHHhC
Q 010458 467 KAGK--MPLIIVERMQKD 482 (510)
Q Consensus 467 ~~g~--~a~~~~~~m~~~ 482 (510)
+... .|+.=|+.+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 7766 788878877664
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.66 E-value=2 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+|..+...|...|++++|...|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555566666666666666666665443
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.65 E-value=56 Score=33.50 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-CCChhhHHHHHHHHHh--
Q 010458 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTN-- 291 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 291 (510)
....+.-.|.++.|.+++-. ..+...+..++...+..|.-.+-.+... ..+..... .|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667888888888866 1223445555555444433222222111 22221110 1111456677777765
Q ss_pred -cCCHHHHHHHHHHHHH
Q 010458 292 -MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 -~~~~~~a~~~~~~~~~ 307 (510)
..++.+|.+++--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4577788888776644
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.51 E-value=57 Score=33.49 Aligned_cols=423 Identities=13% Similarity=0.067 Sum_probs=210.6
Q ss_pred cHHHHHHHHHH-cCCCCCH--HHHHHHHHHHH-hccChHHHHHHHHHHHHccCcccChh-----hHHHHHHHHHHhcChh
Q 010458 54 SAAITMRKWKE-EGHTVHK--YELNRIVRELR-KLKRYKHALEVCEWMELQYDIKLVSG-----DYAVHLDLISKIRGLS 124 (510)
Q Consensus 54 ~a~~~~~~~~~-~~~~~~~--~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 124 (510)
-|...++...+ ..++|.. .++-.+...+. ...+++.|...+++...... .++-. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566666663 3334432 34567777777 57899999999998765431 11111 1234566666666555
Q ss_pred hHHHHHHhcccCCC----C--hhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHH--hCCCcC
Q 010458 125 SAENFFENLPDKMR----G--PDTCSAL-LHSYVQNKKSAEAEALMEKMSECG---FLKCPLPYNHMLNLYI--SNGQLD 192 (510)
Q Consensus 125 ~A~~~~~~~~~~~~----~--~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~--~~g~~~ 192 (510)
|.+.+++..+.-. . ...+.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 8888887655421 1 2223333 333333489999999998877542 1233334444554444 456677
Q ss_pred cHHHHHHHHHhC----------CCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHH-------hCC----------CC--
Q 010458 193 KVPQMLQELKKN----------TSPDVVTYNLWLAACA--SQNDKETAEKAFLELK-------KTK----------ID-- 241 (510)
Q Consensus 193 ~a~~~~~~~~~~----------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~-------~~~----------~~-- 241 (510)
++.+.++.+... ..|...+|..+++.++ ..|+++.+...++++. +.. ++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 787877776332 2345667777777654 4677777776666542 110 00
Q ss_pred -----------CCHHHH---------HHHHH--HHHhcCChHHHHHHHHHHHHc--------cCCCC--------hhhHH
Q 010458 242 -----------PDWISY---------STLTS--LYIKMELPEKAATTLKEMEKR--------TCRKN--------RVAYS 283 (510)
Q Consensus 242 -----------~~~~~~---------~~l~~--~~~~~g~~~~A~~~~~~~~~~--------~~~~~--------~~~~~ 283 (510)
+....| .-++. ..+..+..++|.+++++..+. ...++ ...|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111111 11111 223344444665555543321 11111 11222
Q ss_pred HHHH---------HHHhcCCHHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhcCCHHHHHHHHH--------
Q 010458 284 SLLS---------LYTNMGYKDEVLRIWKKMMSLFA-KMN-------DAEYTCVISSLVKLGEFEKAENIYD-------- 338 (510)
Q Consensus 284 ~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~-------- 338 (510)
..+. ..+-.+++..|...++.+..... .|+ ...+....-.+...|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2222 22456889999999998876532 111 1122222223445699999999997
Q ss_pred HHHhccCCCCcchHHHH--HHHHHhc--CCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHH
Q 010458 339 EWESISGTGDPRVPNIL--LAAYINR--NQLEM--AESFYNRLVTK-GIKP--CYTTWELL-TWGYLKKG--QMEKVLEC 406 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~~--~~~~a~~~ 406 (510)
.....+...+..++..+ +..+... ...++ +..+++.+... .-.| +..++..+ +.++.... ...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44444444444444332 1122222 22233 66666655432 1122 23344444 33332211 22355555
Q ss_pred HHHHhhcc-CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC-CHHHHH-----HHHHHHHHcCC--C
Q 010458 407 FKKAIGSV-RKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HV-STEIYN-----SLLRTYAKAGK--M 471 (510)
Q Consensus 407 ~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~-----~l~~~~~~~g~--~ 471 (510)
+.+.++.. .....+ ..+++.+...+. .|+..+..+......... +. ....|. .+...+...|+ +
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 55544431 111111 122333333333 688877666665543211 11 334553 33444666677 5
Q ss_pred hHHHHHHH
Q 010458 472 PLIIVERM 479 (510)
Q Consensus 472 a~~~~~~m 479 (510)
|.....+.
T Consensus 596 a~~~~~~~ 603 (608)
T PF10345_consen 596 AEEARQQL 603 (608)
T ss_pred HHHHHHHH
Confidence 55555544
No 344
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.30 E-value=45 Score=32.18 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=69.2
Q ss_pred HHhcCCHHHHHHHHHHHHh---ccCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH----
Q 010458 324 LVKLGEFEKAENIYDEWES---ISGTGD-----PRVPNILLAAYINRNQLEMAESFYNRLVT-------KGIKPCY---- 384 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~---- 384 (510)
+.-.|++.+|.+++...-- .|...+ ...||.+.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4557888888888765321 121111 22346666666677777777777776653 4544432
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 385 -------TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 385 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.+|| ..-.|...|++-.|.++|.++.. -+..++..|..+..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~---vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH---VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHH
Confidence 1233 33456778999999999999886 577788899988888864
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.87 E-value=21 Score=31.62 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
|++++..++|.++....-+.-+..-+....+...-|-.|.+.+++..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344445555555443332222211111222233333344555555555555444443
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.18 E-value=79 Score=33.53 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=62.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHH-----HHHHhhccCCCCCC---
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--------MEKVLEC-----FKKAIGSVRKWVPD--- 420 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~~~~~~~~~p~--- 420 (510)
-.|......+-+..+++.+....-.++....+.++..|.+.=+ -+++.+. +..+.+....+.|.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L 678 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLL 678 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhh
Confidence 3455666777778888887765555566666666666654211 1122222 22222221123332
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------CCCCCHHHHHHHHHHHHHc
Q 010458 421 -----HRLITAAYNKLEEQGDIDGAEHLLVTLRN--------------AGHVSTEIYNSLLRTYAKA 468 (510)
Q Consensus 421 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~ 468 (510)
...|....-.+.+.|+.++|+.++-.... .+..+...|..++..|...
T Consensus 679 ~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 679 ERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 22333333345588888888888765544 1222567788888888776
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.90 E-value=3 Score=21.56 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHhCCCHHHHHH
Q 010458 148 HSYVQNKKSAEAEA 161 (510)
Q Consensus 148 ~~~~~~~~~~~A~~ 161 (510)
..+...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.87 E-value=4.5 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHL 443 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 443 (510)
..++.++|+..|..+++.... .|+ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888877765211 111 23556677777777777776655
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.63 E-value=40 Score=29.70 Aligned_cols=261 Identities=14% Similarity=0.143 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhCCCcCcHHHHHHHHHhC----C--CCChhHHHHHHHHHHhcC
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELKKN----T--SPDVVTYNLWLAACASQN 223 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~ 223 (510)
..++++|+.-|++..+.......+ +...++....+.|++++....|.++..- + .-+..+.|.++..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 345666666666665543111122 2234556666666666666666665432 1 114455666666555555
Q ss_pred CHHHHHHHHHHH----HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-----------ChhhHHHHHH
Q 010458 224 DKETAEKAFLEL----KKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-----------NRVAYSSLLS 287 (510)
Q Consensus 224 ~~~~a~~~~~~m----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~ 287 (510)
+.+.-..+++.- .+.. -..--.|-..|...|...+.+.+..++++++...-... =...|..=++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555444444332 1110 01111233456677777777777777777776541110 1345666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc-CCCChhhHHHHHHH-----HHhcCCHHHHHHHH-HHHH---hccCCCCcch---HHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLF-AKMNDAEYTCVISS-----LVKLGEFEKAENIY-DEWE---SISGTGDPRV---PNI 354 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~-~~~~---~~~~~~~~~~---~~~ 354 (510)
.|....+-.+-..+|++..... ..|.+.... +|+- +.+.|++++|..-| +... +.| .|...+ |-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 7777777777777777665432 223333322 2332 34567777765433 3322 223 222222 333
Q ss_pred HHHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH
Q 010458 355 LLAAYINRNQLEMAESFYNR--LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~--~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 424 (510)
|...+.+.|- .-|+. ..-..-.|.......++.+|.. +++.+-.++++.-.+ .+..|+.+-
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~---~IM~DpFIR 340 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS---NIMDDPFIR 340 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc---cccccHHHH
Confidence 3344444331 00110 1111123444556667777654 556565556555443 444444433
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.21 E-value=20 Score=26.07 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (510)
...++|..+-+++...+ .....+-..-+..+...|++++|..+.+... .||...|.+|-.. +.|-.+.+..-+.
T Consensus 19 HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 35677888888877653 1122223333456778889999988888774 5777777776543 5677777777777
Q ss_pred HHHhCC
Q 010458 165 KMSECG 170 (510)
Q Consensus 165 ~~~~~~ 170 (510)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777665
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.11 E-value=5.4 Score=21.90 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+|..+...|...|++++|.+.|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888887764
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.76 E-value=13 Score=36.43 Aligned_cols=106 Identities=12% Similarity=-0.023 Sum_probs=80.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 438 (510)
+...|+...|...+.......+.-..+....+.....+.|-...|-.++.+.+.. . ...+-++..+.+++.-..+++
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--N-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--c-ccCchHHHhcchhHHHHhhhH
Confidence 3456888889888887765533334445666777777788888898998888864 2 445667888889999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 439 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
.|++.|+++.+..+.++..-+.|...-|+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 99999999999988888877777766554
No 353
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=79.42 E-value=3 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.5
Q ss_pred hcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010458 48 LVYAKRSAAITMRKWKEEGHTVHKYELNRIVREL 81 (510)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 81 (510)
...+..+|..+|+.|+.+|.+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 33344899999999999998887 577777654
No 354
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.97 E-value=0.83 Score=36.31 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=22.1
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
.+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333344444455555555444444444443
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.78 E-value=55 Score=30.29 Aligned_cols=119 Identities=12% Similarity=0.008 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK---KGQMEKVLECFK 408 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~ 408 (510)
.-+.+++++++.++ .+......++..+.+..+.++..+-++++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33445555554432 34444555555555555556666666666654222 44455544443332 223444444444
Q ss_pred HHhhccCCC--------CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 409 KAIGSVRKW--------VPD-------HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 409 ~~~~~~~~~--------~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+.++.+.+. .+. ..++..+...+..+|..+.|..+++-+.+.+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 444321110 011 12333444455678999999999999988776
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.56 E-value=24 Score=26.04 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=50.3
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
....++|..+.+++...+ .....+-..-+..+.+.|+|++| +..-.....||...|.+|-. .+.|--+++...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 446788999999988775 12333333445667788999988 44444444567777766554 4678888888888
Q ss_pred HHHHhCC
Q 010458 164 EKMSECG 170 (510)
Q Consensus 164 ~~~~~~~ 170 (510)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8777655
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.50 E-value=92 Score=32.68 Aligned_cols=316 Identities=11% Similarity=0.106 Sum_probs=165.8
Q ss_pred cccCCcHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcc-C---hHHHHHH----HHHHHHccCcccChhhHHHH
Q 010458 49 VYAKRSAAITMRKWKEEGHTV-------HKYELNRIVRELRKLK-R---YKHALEV----CEWMELQYDIKLVSGDYAVH 113 (510)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~-~---~~~a~~~----~~~~~~~~~~~~~~~~~~~l 113 (510)
.........+++++...|... .=+-|+-+..-+.+.. + ..+..++ ..+....+ .+ .--
T Consensus 294 Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g-~~------~eA 366 (894)
T COG2909 294 LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHG-LP------SEA 366 (894)
T ss_pred HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCC-Ch------HHH
Confidence 334488888899988888653 2223455554443321 1 1222222 22233332 11 123
Q ss_pred HHHHHHhcChhhHHHHHHhcccC---C-------------CC------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 114 LDLISKIRGLSSAENFFENLPDK---M-------------RG------PDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~---~-------------~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
+...+..|+++.|..++++.... + |+ +...-.-+.......++++|..++.++...-.
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 44445667777777766654111 0 11 11111222334567899999999988775433
Q ss_pred CCCcc-------hHHHHHH-HHHhCCCcCcHHHHHHHHHhCCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 172 LKCPL-------PYNHMLN-LYISNGQLDKVPQMLQELKKNTS-----PDVVTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 172 ~p~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
.|+.. .|+.+-. .....|++++|.++.+......+ +....+..+..+..-.|++++|..+..+..+.
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 33222 3444322 23457889999999888776633 35667777888888899999999998886544
Q ss_pred CCCCCHHHHHHHH-----HHHHhcCCh--HHHHHHHHHHHHcc--CC----CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 239 KIDPDWISYSTLT-----SLYIKMELP--EKAATTLKEMEKRT--CR----KNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 239 ~~~~~~~~~~~l~-----~~~~~~g~~--~~A~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
.-..+...+..+. ..+...|+. .+....|....... -. +-..++..++.++.+ .+.+..-...-
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~ 603 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLG 603 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhc
Confidence 2233333333222 234556632 23333333333220 01 112344445555554 33333222222
Q ss_pred HHhc--CCCCh--h--hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch-HHH---H--HHHHHhcCCHHHHHHHHH
Q 010458 306 MSLF--AKMND--A--EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV-PNI---L--LAAYINRNQLEMAESFYN 373 (510)
Q Consensus 306 ~~~~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~---l--~~~~~~~g~~~~A~~~~~ 373 (510)
.+.| ..|.. . .+..++......|+.++|...++++......+.... |.+ . .......|+.+.+.....
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 2211 12222 1 233667778889999999999998876433332111 111 1 122335678877777665
Q ss_pred H
Q 010458 374 R 374 (510)
Q Consensus 374 ~ 374 (510)
+
T Consensus 684 ~ 684 (894)
T COG2909 684 K 684 (894)
T ss_pred h
Confidence 5
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.14 E-value=88 Score=32.27 Aligned_cols=326 Identities=8% Similarity=0.016 Sum_probs=150.4
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
.|.....-...+..+.+.++++....++..- ..+.........+....|+.++|......+-..|.. .+...+.++
T Consensus 95 ~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~ 170 (644)
T PRK11619 95 LPPARSLQSRFVNELARREDWRGLLAFSPEK---PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLF 170 (644)
T ss_pred CchHHHHHHHHHHHHHHccCHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHH
Confidence 3444444444555666667777666633221 124444455666677778877777776666555532 466677777
Q ss_pred HHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHH------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACA------------SQNDKETAEKAFLELKKTKIDPDWISYST 249 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 249 (510)
..+.+.|.+.... +..++... ...+...-..+..... -..+...+...+.. +.++...-..
T Consensus 171 ~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~ 244 (644)
T PRK11619 171 SVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQM 244 (644)
T ss_pred HHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHH
Confidence 7777666554432 22322221 1112221122222110 00111111111111 1122211111
Q ss_pred HHHHH--HhcCChHHHHHHHHHHHHcc-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010458 250 LTSLY--IKMELPEKAATTLKEMEKRT-CRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324 (510)
Q Consensus 250 l~~~~--~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (510)
++.++ ....+.+.|...+....... ..+. ...+..+.......+...++...++..... ..+......-+...
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~A 322 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMA 322 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHH
Confidence 11111 23445577777777654432 1111 112333333333332234444444443221 11333334444444
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCC--------CCH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK------------GIK--------PCY 384 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~--------p~~ 384 (510)
...++++.+...+..|.... .....-.--+.+++...|+.++|..+|+.+... |.. |..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~ 401 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKP 401 (644)
T ss_pred HHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCch
Confidence 46667766666666654322 112223334556655567777777766665321 110 000
Q ss_pred -H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 385 -T-----TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 385 -~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
. .-..-+..+...|....|...+..+... .+......+.....+.|.++.+......
T Consensus 402 ~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-----~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 402 DSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-----RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0 0111234455667777777777776652 3445555555666677777777665543
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.01 E-value=71 Score=31.14 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
+.+..+.+..+..... |..--...+.-+-.-|....++++|.++++.+.+.+-.+..+-..++.-+
T Consensus 184 D~D~fl~l~~kiqt~l-g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 184 DKDFFLRLQKKIQTKL-GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3444444444443321 22223344444445566666666666666666666555544444444433
No 360
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.79 E-value=85 Score=31.90 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=11.5
Q ss_pred HHHHHHHhcChhhHHHHHHhc
Q 010458 113 HLDLISKIRGLSSAENFFENL 133 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~ 133 (510)
.+..+.-.|.+++|.+++...
T Consensus 154 ~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 154 YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHTT-HHHHHHHH-TT
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 555555666666666666443
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.59 E-value=6.2 Score=21.19 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
|+.+.|..+|+++....+.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888777667777776654
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.66 E-value=5.7 Score=23.87 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.+..+|...|+.+.|+++++++...+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467889999999999999999886554
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.53 E-value=50 Score=28.57 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=9.1
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 010458 326 KLGEFEKAENIYDEWESI 343 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~ 343 (510)
..+++.+|+++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.22 E-value=21 Score=26.32 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 010458 154 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 233 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 233 (510)
...++|..+.+.+...+.. ...+-..-+..+.+.|++++| +..-.....||...|-++.. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3445566666555554321 111111222334456666655 22222223445555544332 35565566666665
Q ss_pred HHHhCC
Q 010458 234 ELKKTK 239 (510)
Q Consensus 234 ~m~~~~ 239 (510)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.12 E-value=6.2 Score=23.72 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=8.3
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 010458 252 SLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~ 271 (510)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444443
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.57 E-value=53 Score=28.41 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 399 (510)
.+..|.+.-++..|-...+++. .|- --...+--|.+..+.+--.++.+-....+++-+..-...++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIi----EPI--QSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKII----EPI--QSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhh----hhH--HhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 4455555555555544444443 221 11223334556555555555555555556655555555554 567899
Q ss_pred HHHHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 400 MEKVLECFKKAIGSVR----------KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
..+|+.-++.-..... --.|.+.....++..|.+ +++++|.+++.++-+.|..+.+..+++.+.+-...
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMD 286 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 9999999988776310 034777777888877665 57999999999999999998888888888766554
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.56 E-value=6.3 Score=20.51 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+..+...+...|+++.|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444455555555555544443
No 368
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.47 E-value=25 Score=28.88 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHH---HhccC-------hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-----------ChhhH
Q 010458 68 TVHKYELNRIVREL---RKLKR-------YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-----------GLSSA 126 (510)
Q Consensus 68 ~~~~~~~~~li~~~---~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A 126 (510)
|.|...++.-..++ ++... +++|+.-|++....+ |....++..+..++...+ -+++|
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 55666554433333 33333 344555566666654 556677888887776554 25667
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 127 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
.+.|++.....|+...|+.-+... .+|-++..++.+.+.
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 777777777889999999888876 357777777776653
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.36 E-value=60 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
++.....+...+.+.+++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 6666777777888888887777666
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.08 E-value=49 Score=31.89 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHcCC
Q 010458 456 EIYNSLLRTYAKAGK 470 (510)
Q Consensus 456 ~~~~~l~~~~~~~g~ 470 (510)
..|..++.-....+.
T Consensus 349 ~iY~~~i~~~i~~~~ 363 (413)
T PHA02875 349 HFYKYLLKEAADIAL 363 (413)
T ss_pred ehHHHHHHHHHHHHH
Confidence 446666665555443
No 371
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.98 E-value=1.1e+02 Score=31.82 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH---HhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS---KIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
+-..+..||..+.+.|++++....-..|... .|.++..|...+.-.. ..+...++..+|++.....-++..|.-.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~--~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI--APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHH
Confidence 4556788999999999999988888888776 4778888776665443 3467778888888887765556666555
Q ss_pred HHHHH-------hCCCHHHHHHHHHHHHh-CCCCCCc--chHHHHH---HHHHhCCCcCcHHHHHHHHHhCCCCChhHHH
Q 010458 147 LHSYV-------QNKKSAEAEALMEKMSE-CGFLKCP--LPYNHML---NLYISNGQLDKVPQMLQELKKNTSPDVVTYN 213 (510)
Q Consensus 147 ~~~~~-------~~~~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 213 (510)
+..+. ..++++....+|.+..+ .|...+. ..|..+. ..|..+-..++...+|..-.... -|..+-+
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~ 268 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRG 268 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhH
Confidence 54443 34567777777877654 2322221 1222222 22333333345555555433321 1222211
Q ss_pred HHHHHH-------HhcCCHHHHHHH-------HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 214 LWLAAC-------ASQNDKETAEKA-------FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 214 ~l~~~~-------~~~~~~~~a~~~-------~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
.-..-- ....+++.+.+- |.+..+. ..+-...|..+++.+.+.|++-....+++++...
T Consensus 269 ~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 269 WDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred HHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 111111 111223333222 2222221 1233345677788888888887777766666543
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.37 E-value=37 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
+..+-+.....- .+.|++.+...-+++|.+.+++..|.++|+-++..-.....+|-.++.
T Consensus 67 EvrkglN~l~~y--DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDY--DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhcc--ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445555566654 788999999999999999999999999999887665443345655554
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.34 E-value=12 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhcCCHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMND--AEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 335 (510)
..++.++|+..|+...+.-..+.. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443222221 234445555555555554443
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.22 E-value=41 Score=26.64 Aligned_cols=76 Identities=12% Similarity=0.270 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGH------VSTEIYNSLLRTYAKAGK---MPLIIVERMQKDNVQMDAETQKVL 494 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~---~a~~~~~~m~~~~~~pd~~t~~~l 494 (510)
.+.++.-....+++.-...+++.+....+ .+...|..++.+..+..- -+..+|+-|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555556666666666666543322 244567777777755443 466777888777778888888888
Q ss_pred HhhcC
Q 010458 495 KITSE 499 (510)
Q Consensus 495 ~~~~~ 499 (510)
+++|.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 87774
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.03 E-value=56 Score=29.09 Aligned_cols=88 Identities=9% Similarity=0.130 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK--- 396 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 396 (510)
-|.+++..+++.++....-..-+.--+.-+.+...-|-.|.+.++...+.++-..-...--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36778888888877665544433211222344455566677888888777777665543212233446666655544
Q ss_pred --cCCHHHHHHHH
Q 010458 397 --KGQMEKVLECF 407 (510)
Q Consensus 397 --~~~~~~a~~~~ 407 (510)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 68888887777
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.01 E-value=45 Score=26.43 Aligned_cols=81 Identities=9% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTC-----RKNRVAYSSLLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
.|.++......++......+++.+..... ..+..+|..++++..+..- ---+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555666666666666666532210 1244566666666644443 33355666666665566666667777
Q ss_pred HHHHHhc
Q 010458 321 ISSLVKL 327 (510)
Q Consensus 321 ~~~~~~~ 327 (510)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.39 E-value=17 Score=35.78 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
.|-....|...-.+.-.|+...|.+.+.......+.-.-+....|.+...+.|-...|..++.+..... ...+-++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343333443333334456666666655555443333233444455555555555555666655555442 2233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 010458 321 ISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
.+++....+++.|++.|+...+.
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhc
Confidence 66666666666666666665543
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.92 E-value=1e+02 Score=29.68 Aligned_cols=71 Identities=8% Similarity=-0.085 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhccChHHHHHHHHHHHHccCcccChh--hHHHHHHHHHHhcChhhHHHHHHh
Q 010458 57 ITMRKWKEEGHTVHKYE--LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG--DYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++++.+.+.|..|+... -...+...+..|+.+-+.-+ .+.| ..++.. .....+...+..|+.+....+++.
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~~g-a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLL----MKHG-AIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----HhCC-CCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 55666666776665432 22344455566665433333 3332 111110 111234445566777766666654
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.59 E-value=72 Score=27.75 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=36.4
Q ss_pred HhcChhhHHHHHHhcccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCCcCcHHH
Q 010458 119 KIRGLSSAENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQ 196 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 196 (510)
...+++.|+..+.+.....|++ .-|+.-+-.+.+..+++.+..--....+. .|+.. ..-.+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3344555555555555555543 33344444455555555554443333332 23332 22223333444445555555
Q ss_pred HHHHH
Q 010458 197 MLQEL 201 (510)
Q Consensus 197 ~~~~~ 201 (510)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55544
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.45 E-value=49 Score=25.37 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=16.0
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
+.|++.....-++++.+.+++..|.++|+-+..
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555555555544443
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.17 E-value=38 Score=23.99 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh
Q 010458 54 SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123 (510)
Q Consensus 54 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (510)
.+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. ++ +..|..+++++...|.-
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg-----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK-----EGWFSKFLQALRETEHH 82 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC-----CcHHHHHHHHHHHcCch
Confidence 34445555555442 222222222222223345555555555544 22 33444444444444443
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.32 E-value=31 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 416 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
...|++.+|..++.++...|+.++|.++..++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4578888888888888888888888888888877665
No 383
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.23 E-value=80 Score=27.38 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=73.2
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC-----------CCCHHHHHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGI-----------KPCYTTWELLT 391 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----------~p~~~~~~~l~ 391 (510)
|.+..+..--.++.+-....++.-+..-..+++ +...|+...|...++.-.. .|. .|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444555444444444444455554554455544 4578999999988887654 221 46666667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
..|. .+++++|.+.+.+..+. |+.|.. ..+.+.+.+-... ..+-.+ ++-+++.|..
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~l--gysp~D-ii~~~FRv~K~~~-~~E~~r-lE~ikeig~t 302 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKL--GYSPED-IITTLFRVVKNMD-VAESLR-LEFIKEIGLT 302 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHc--CCCHHH-HHHHHHHHHHhcc-HHHHHH-HHHHHHHhhH
Confidence 7655 57899999999999987 887753 4445555543332 333221 2445555554
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.64 E-value=89 Score=27.65 Aligned_cols=273 Identities=14% Similarity=0.130 Sum_probs=158.0
Q ss_pred CCCCCCcchHHHHHHHH-HhCCCcCcHHHHHHHHHhC-CCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC
Q 010458 169 CGFLKCPLPYNHMLNLY-ISNGQLDKVPQMLQELKKN-TSPDV---VTYNLWLAACASQNDKETAEKAFLELKK---TKI 240 (510)
Q Consensus 169 ~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~ 240 (510)
.+-.||+..-|..-.+- .+...+++|+.-|++..+. +.... .+...++....+.+++++....+.++.. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 44567776555432221 1334688899999998876 33333 3455678889999999999999998742 111
Q ss_pred --CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--cCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 010458 241 --DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRV----AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312 (510)
Q Consensus 241 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (510)
..+....|.+++....+.+.+-...+|+.-.+. ..+ +.. |-+.+...|...+.+.+..++++++...-..-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 224556778888777777777777777654432 111 222 33567888888899999999999887753221
Q ss_pred Ch-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCCcchHHHHH----HHHHhcCCHHHHHH-HHHHH
Q 010458 313 ND-----------AEYTCVISSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILL----AAYINRNQLEMAES-FYNRL 375 (510)
Q Consensus 313 ~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~ 375 (510)
+. ..|..-|..|....+-..-..++++.... ..-|.+.....+- ....+.|++++|.. +|+..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 34677778888888877777888876542 2234443333221 12345678887764 44444
Q ss_pred Hh---CCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 376 VT---KGIKPCYTT---WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 376 ~~---~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.. .| .|...+ |-.+...+.+.|- .-|+.-......-.|.+...+.++.+|.. +++.+-.++++.-..
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS 331 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc
Confidence 32 33 233332 3334444444331 00110001100234455566788887755 466666666655443
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.99 E-value=33 Score=34.40 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
+++.+|...|++..+.++++......++-+.=...++..++...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 455555555555555555555554322222223344444555555554
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.80 E-value=43 Score=24.46 Aligned_cols=6 Identities=17% Similarity=-0.003 Sum_probs=2.2
Q ss_pred CCHHHH
Q 010458 154 KKSAEA 159 (510)
Q Consensus 154 ~~~~~A 159 (510)
|++++|
T Consensus 53 G~Yq~A 58 (115)
T TIGR02508 53 GDYQSA 58 (115)
T ss_pred chHHHH
Confidence 333333
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.37 E-value=22 Score=22.44 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=16.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+.-++.+.|++++|.+..+.+.+..|.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4445566666666666666666666554
No 388
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=66.24 E-value=1e+02 Score=27.88 Aligned_cols=70 Identities=20% Similarity=0.112 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHH-HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFE-KAENIYDEWESISGTGDPRVPNILLAAYINRNQL 365 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (510)
+...+++.....++-.+...-|+.. .|..++++---+.+-+ -|.+.++.+ ..|.-|+.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChH
Confidence 3445666666555544444455553 4666666544332221 133333333 3677788888888887
Q ss_pred HHHH
Q 010458 366 EMAE 369 (510)
Q Consensus 366 ~~A~ 369 (510)
+-.+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7544
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.01 E-value=41 Score=23.84 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (510)
+.++++...+++ -.+......+-..-...|+.+.|.+++..++ . .+..|..+++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~--ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQG--LLTEEDRNRIEAATENHGNESGARELLKRIV-Q--KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHcCchhhhh
Confidence 345555555554 2333333333333234567777777777777 5 3455666666666666655443
No 390
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=1.1e+02 Score=27.46 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccC----CCChhhHHHHHH---HHHhCCCHHHHHHHHHHHHhCC
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDK----MRGPDTCSALLH---SYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
-.+.+..+...|++.++.+.+.++.++..+. |....++.+.++ .|....-+++.++..+.|.++|
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3455666777777777776666655544332 333333333332 2333333456666666666666
No 391
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.43 E-value=1e+02 Score=26.96 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-MGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 308 (510)
.++..+-+.|+++++...++++...+...+..-.+.+..+|-. .|....++.++..+...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 4566677788888888888888877777777777777777643 34455556666555443
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.80 E-value=1.3e+02 Score=27.87 Aligned_cols=118 Identities=12% Similarity=-0.011 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN---MGYKDEVLRIW 302 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 302 (510)
+.-+.++++..+.+ +.+......++..+.+..+.++..+.++++....+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34445556655553 244555566666666666666666777777665333 45555555554433 22344554444
Q ss_pred HHHHHh------cC----C--CC--hh---hHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 303 KKMMSL------FA----K--MN--DA---EYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 303 ~~~~~~------~~----~--~~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.+.... +. . ++ .. .+..+..-+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 10 0 00 01 122222233456777777777777766543
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.59 E-value=15 Score=37.86 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=67.2
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCC
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (510)
++|..+.+.|.++-|+.+.+.-..+ ...+...|+++.|.+.-.++. ++.+|..|.....+.|+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcc
Confidence 4455556667777777665443222 235567899998888766654 67899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
.+-|+..|+.... |..|--.|.-.|+.++..++.+..
T Consensus 688 ~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred hHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 9999999987765 333333455566666655555444
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.05 E-value=1.5e+02 Score=28.19 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSP---DVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
+.-+...|...|+++.|++.|.+.+.-... .+..|-.+|..-.-.|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 444555555566666666666554333111 23334444444445555555555544443
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.88 E-value=57 Score=23.48 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666654
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.45 E-value=96 Score=25.92 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=87.7
Q ss_pred cCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC---ccc----ChhhHHHHHHHHHHhcChhhHHHHHHhcccCC
Q 010458 65 EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD---IKL----VSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137 (510)
Q Consensus 65 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (510)
.|..++...++.++..+.+..-...-+..+-.+..+.. +.. +......-+..|-+.|++.+--.+|-.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv---- 77 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV---- 77 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH----
Confidence 47778888888888888775444433333333333210 111 1111222233444455554443333332
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHH--------HHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh
Q 010458 138 RGPDTCSALLHSYVQNKKSAEAEAL--------MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 209 (510)
...+.++++-.++ .++.++ + ....|.....+-++.-+.+++.+.+--
T Consensus 78 ------------~~gce~~~dlq~~~~~va~~Ltkd~Kd---k-~~vPFceFAetV~k~~q~~e~dK~~LG--------- 132 (233)
T PF14669_consen 78 ------------KMGCEKFADLQRFCACVAEALTKDSKD---K-PGVPFCEFAETVCKDPQNDEVDKTLLG--------- 132 (233)
T ss_pred ------------HhhcCCHHHHHHHHHHHHHHHHhcccc---c-CCCCHHHHHHHHhcCCccchhhhhhhh---------
Confidence 2222233222222 222222 1 233466666666666555554433321
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKI--------------DPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+=-+++..|-+..++.++.++++.|.+..+ .+-...-|.....+.++|.+|.|..+++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 1223455667777888888888888765432 1222334555666667777777766665
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.33 E-value=6.8 Score=37.29 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=64.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHH
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTT-WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEE 433 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 433 (510)
+.-+...+.++.|..++.++++. .||... |..-..++.+.+++..|+.=+.++++. .|+ ...|..=..++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc----CchhhheeeeccHHHHh
Confidence 34455667888888888888886 454443 444447788888888888888888764 233 3344444566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCH
Q 010458 434 QGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
.+.+.+|...|+......|.++
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcH
Confidence 7788888888888877766543
No 398
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.83 E-value=1.1e+02 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010458 390 LTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~ 410 (510)
++.++...|+.+.|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555554443
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.67 E-value=68 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3456667777777777777777766665
No 400
>PRK10941 hypothetical protein; Provisional
Probab=60.34 E-value=92 Score=27.91 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
.+.+-.+|.+.++++.|+++.+.+..... .++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34455556666666666666666666541 13334555555566666666666666665554
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.10 E-value=1.1e+02 Score=26.26 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHhhccCCCCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 386 TWELLTWGYLKKGQ-------MEKVLECFKKAIGSVRKWVP----D-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 386 ~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.+-.+.+.|-..|+ ...|.+.|.++.+. ...| + ..+...+.....+.|+.++|.+.|.++...+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~--e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN--EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh--CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34444555555665 33566677776654 2222 2 334455667778899999999999999876554
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.60 E-value=57 Score=25.96 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh
Q 010458 56 AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123 (510)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (510)
.++.+.+.+.|.++++. -..++..+.+.+++-.|.++++.+.+.+ .+.+..+-...++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCCE
Confidence 45566777788877654 5567778887877788999999998864 445566666666777776643
No 403
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.52 E-value=19 Score=23.58 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhc
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENL 133 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 133 (510)
-.....++..+...|++++|.++.+.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444445555555555555554443
No 404
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.13 E-value=5.2 Score=36.25 Aligned_cols=85 Identities=9% Similarity=-0.110 Sum_probs=36.2
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
.|.++.|++.|......+ |+....|..-.+++.+.++...|++-+....+.+|| ...|-.--.+..-.|++++|-..
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 344555555554444443 334444444444444555555554444444444333 11122112222223444544444
Q ss_pred HHHHHhCC
Q 010458 163 MEKMSECG 170 (510)
Q Consensus 163 ~~~~~~~~ 170 (510)
|....+.+
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 44444444
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.86 E-value=15 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=14.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
-.+|.+|...|++++|.+.++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455666666666666666655543
No 406
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.69 E-value=1.1e+02 Score=25.63 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc------cC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGS------VR------KWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+++-.|.+..++.++.++++.+.+. ++ +..+.-.+.+.....+.+.|..+.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4555666777777777777776653 01 1234455678888889999999999999884
No 407
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.54 E-value=34 Score=22.74 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 418 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
.|....++-++..+++..-.+.++..+.++.+.|..+...|-.-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455555555555555556666666666666655555555555555444
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.90 E-value=34 Score=28.80 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
+..++.....|++.+|..++..+...|+.++|.++..++...
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444444566666666666666667777776666666654
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.72 E-value=14 Score=28.62 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=17.7
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 471 MPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 471 ~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
.|..+|.+|.+.|-+|| .|+.|+..+
T Consensus 113 DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred cHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 57777777777777776 466666554
No 410
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.24 E-value=1.3e+02 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC
Q 010458 359 YINRNQLEMAESFYNRLVTKGIK 381 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~ 381 (510)
-...+++.+|+.+|+++....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888899999888776444
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.65 E-value=57 Score=28.82 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVR--K-WVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
..+..-|.+.|++++|.++|+.+..... | ..+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455667777777777777777653211 1 2334445556666667777776666554443
No 412
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.12 E-value=2.1e+02 Score=28.09 Aligned_cols=385 Identities=11% Similarity=0.112 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH-HHHHhCCCHHHHHHHHHHH
Q 010458 89 HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL-HSYVQNKKSAEAEALMEKM 166 (510)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~-~~~~~~~~~~~A~~~~~~~ 166 (510)
....+|+....+ ++.|+..|...+..+-+.+.+.+...+|..+....|+ +..|-.-. .-|-.+.+++.|..+|..-
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345666666655 4668889999999888888899999999999888764 66665443 3344555699999999888
Q ss_pred HhCCCCCCc-chHHHHHHH---HH-----h---CC-CcCcH-HHHHHH------HH---hC---CCCChh--H------H
Q 010458 167 SECGFLKCP-LPYNHMLNL---YI-----S---NG-QLDKV-PQMLQE------LK---KN---TSPDVV--T------Y 212 (510)
Q Consensus 167 ~~~~~~p~~-~~~~~l~~~---~~-----~---~g-~~~~a-~~~~~~------~~---~~---~~~~~~--~------~ 212 (510)
.+.+ |+. ..|....+. |. + .| +.+.- .++-+. .. .. ..+... . .
T Consensus 167 LR~n--pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ 244 (568)
T KOG2396|consen 167 LRFN--PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFL 244 (568)
T ss_pred hhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHH
Confidence 8765 544 334322211 11 0 01 11111 111100 00 00 001110 0 0
Q ss_pred ----HHHHHHHHhcC---C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhh
Q 010458 213 ----NLWLAACASQN---D----KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281 (510)
Q Consensus 213 ----~~l~~~~~~~~---~----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 281 (510)
...++ ....+ + .+.|.+.++-..+....+ +...-....-.-+.+....+|++..+. -|+...
T Consensus 245 kel~k~i~d-~~~~~~~~np~~~~~laqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 245 KELQKNIID-DLQSKAPDNPLLWDDLAQRELEILSQTDLQH----TDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHH-HHhccCCCCCccHHHHHHHHHHHHHHhhccc----hhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 01111 22221 1 345666666554432222 222222222233344455788887764 456667
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHHHHhc-CCCC-hhhHHHHHHHHHhcCCHHH-HHHHHHHHHhccCCCCcchH
Q 010458 282 YSSLLSLYTNM------GYKDEVLRIWKKMMSLF-AKMN-DAEYTCVISSLVKLGEFEK-AENIYDEWESISGTGDPRVP 352 (510)
Q Consensus 282 ~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~ 352 (510)
|+..|..|... ......+.+|+.....+ ..+. ...|..+.-.++..+.... |..+..+ ++..+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHH
Confidence 77777766543 24556677777766543 2222 3456666656665554433 3333333 334566666
Q ss_pred HHHHHHHHhc-CCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HH-HHHHHHHHHhhccCCCCCCHHHH-HHH
Q 010458 353 NILLAAYINR-NQLEMA-ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ-ME-KVLECFKKAIGSVRKWVPDHRLI-TAA 427 (510)
Q Consensus 353 ~~l~~~~~~~-g~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~-~a~~~~~~~~~~~~~~~p~~~~~-~~l 427 (510)
..-+....+. .+.+-- ...+......-..+....|+... .++ +. ....++-.+... ...|+..++ +.+
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~ 466 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCceeehhHHH
Confidence 5555544422 222221 22233333321223334444443 222 22 112222222222 334666555 677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHh-CCCCCCHHHHHHHHhh
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK----MPLIIVERMQK-DNVQMDAETQKVLKIT 497 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~a~~~~~~m~~-~~~~pd~~t~~~l~~~ 497 (510)
++-+.+.|-.++|..++..+....|++...|..++..-..... .+..+++.|.. -| -|+..|.-.++.
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 8888899999999999999999988888888888876544332 67788888874 56 555566655553
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.76 E-value=1.9e+02 Score=27.57 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=40.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHh--CCCcCcHHHHHHHHHhC
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYIS--NGQLDKVPQMLQELKKN 204 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 204 (510)
..+...+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999987 555554 44555566653 45677888888887655
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.39 E-value=95 Score=23.96 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 89 HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.+.++|+.|...+.....+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777766653344445566666666666777777666654
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.76 E-value=80 Score=25.13 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+.+.+.|++++.. -..++..+.+.++.-.|.++++.+.+.++..+..|-..-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445566555533 33456666666666677777777777665555555444444444444
No 416
>PRK10941 hypothetical protein; Provisional
Probab=54.69 E-value=1.6e+02 Score=26.40 Aligned_cols=63 Identities=14% Similarity=-0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
+.+-.+|.+.++++.|+++.+.++.. .+.++.-+.--.-.|.+.|.+..|..-++...+..|.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34445566666677777666666642 1223334444455566667777777666666666554
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.06 E-value=1.6e+02 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 010458 210 VTYNLWLAACASQN--DKETAEKAFLELKKT 238 (510)
Q Consensus 210 ~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~ 238 (510)
.-...++.+|++.+ ++++|+....++++.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455666676666 677777777777654
No 418
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.83 E-value=3e+02 Score=29.20 Aligned_cols=68 Identities=7% Similarity=-0.007 Sum_probs=37.9
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
+=..|...|++++|.++-+.- |+ ..++..-.+.|.+.+++..|-++|.++.+ .|..+.--+....+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 345666777777776664432 22 23344445566677777777777776633 24444444444444
Q ss_pred cC
Q 010458 191 LD 192 (510)
Q Consensus 191 ~~ 192 (510)
.+
T Consensus 432 ~~ 433 (911)
T KOG2034|consen 432 ER 433 (911)
T ss_pred HH
Confidence 44
No 419
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.54 E-value=1.6e+02 Score=25.88 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHc
Q 010458 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEKR 273 (510)
Q Consensus 214 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 273 (510)
.++..+-+.++++++..+++++.+.+...+..--+.|-.+|-. .|....+++++..+.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 4667778889999999999999888777777777777666633 45556677777766654
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.37 E-value=51 Score=20.22 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=16.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHH
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLL 462 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 462 (510)
.+.|-..++..++++|.+.|+. ++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555556666555554 555554444
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.22 E-value=1.3e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=23.7
Q ss_pred hhHHHHHHhcccCCCChh---------hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 124 SSAENFFENLPDKMRGPD---------TCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 124 ~~A~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
+.|+.+|+.+.+..+.+. .-...+-.|.+.|.+++|.+++++...
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 346666666655432211 112233456666666666666666655
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.53 E-value=35 Score=32.73 Aligned_cols=105 Identities=10% Similarity=-0.129 Sum_probs=71.3
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 156 (510)
+..+.+.+.++.|+.++.++.+.. |....-|..-..++.+.+++..|+.=+..+.+..|. ...|..-..++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 445667788888888888888764 334444444556777888888887777777776554 45555555666677778
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
.+|+..|+..... .|+..-....+.-|-
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 8888888777664 477666666665543
No 423
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.87 E-value=1.6e+02 Score=25.86 Aligned_cols=55 Identities=5% Similarity=-0.093 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
.+..++...|++-++++...++....+.+...|..-..+.+..-+ +|.+=|....
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 334455555666666666666666666665555555555554444 4444444443
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.42 E-value=2.2e+02 Score=27.05 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRK---NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
.+.-+...|..+|+++.|++.|.+..+- +.. .+..|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445556666666666666666664332 111 122344444555555666666555555544
No 425
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.77 E-value=61 Score=20.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 010458 390 LTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+.-++.+.|++++|.++.+.++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3344555555555555555555
No 426
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.74 E-value=1.9e+02 Score=26.11 Aligned_cols=17 Identities=29% Similarity=0.133 Sum_probs=9.2
Q ss_pred hCCCHHHHHHHHHHHHh
Q 010458 152 QNKKSAEAEALMEKMSE 168 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~ 168 (510)
..+++..+...+.....
T Consensus 53 ~~~~~~~a~~~~~~a~~ 69 (292)
T COG0790 53 YPPDYAKALKSYEKAAE 69 (292)
T ss_pred ccccHHHHHHHHHHhhh
Confidence 34555555555555554
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.72 E-value=37 Score=30.58 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 247 (510)
.-|+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34567777777777777777777777777764433333
No 428
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.53 E-value=53 Score=21.80 Aligned_cols=51 Identities=2% Similarity=-0.042 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHh
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (510)
.|....++.++...++..-.++++..+..+.+.+ ..+.+.|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 4555667888888888888888888888888876 34566666666666543
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.21 E-value=2e+02 Score=26.05 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhc
Q 010458 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGS 413 (510)
Q Consensus 366 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 413 (510)
..|...|.++-..+ +......+...|.. ..++.+|..+|.++.+.
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 35666666666654 33333333333322 33667777777777765
No 430
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.11 E-value=83 Score=22.92 Aligned_cols=53 Identities=15% Similarity=-0.103 Sum_probs=31.4
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (510)
..+.++++...+ .+..|.....+.-.|++.|+-+.|.+-|+.=....|...+|
T Consensus 56 le~~~ek~~ak~-~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKN-GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHhhcC-CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 344555555554 34555566666667777777777777776655444544433
No 431
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=48.63 E-value=2e+02 Score=25.65 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHH
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (510)
.+.++..+.+.+....|+.+.+.+... +.-+.....++.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l---~~F~~~LE~LLh 123 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL---PYFSHALELLLH 123 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC---CCcHHHHHHHHH
Confidence 567788888888888888888887653 333444444443
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.11 E-value=88 Score=22.51 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=7.6
Q ss_pred HhCCCcCcHHHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELK 202 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~ 202 (510)
...|++++|.+.+++..
T Consensus 52 ~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAI 68 (94)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34444444444444433
No 433
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.13 E-value=2e+02 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=8.6
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 010458 252 SLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~ 270 (510)
.+......+++|+..+.+.
T Consensus 86 ~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhccccHHHHHHHHH
Confidence 3334444444454444444
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.07 E-value=2.7e+02 Score=26.39 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcc--------------------
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLP-------------------- 134 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------- 134 (510)
......+...++++....+++. .|.-.+++..+...+...|+.+.|.+++++..
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q ss_pred -------cCCCChhhHHHHH---HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hCCCcCcHHHHHHHHHh
Q 010458 135 -------DKMRGPDTCSALL---HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQMLQELKK 203 (510)
Q Consensus 135 -------~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 203 (510)
...-|...|.++. ..+.+.|-+..|+++.+-+...+..-|+..-..+|+.|+ +.++++-.+++++....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Q ss_pred CCCCC------hhHHHHHHHHHHhcCC--------------HHHHHHHHHHHH
Q 010458 204 NTSPD------VVTYNLWLAACASQND--------------KETAEKAFLELK 236 (510)
Q Consensus 204 ~~~~~------~~~~~~l~~~~~~~~~--------------~~~a~~~~~~m~ 236 (510)
....+ -..|+..+..+...++ .+.|...+.+..
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.84 E-value=69 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=16.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
+.|-++++...+++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555556665555555555544443
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=2.5e+02 Score=25.91 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----cCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCh----h
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR----TCRKNRVAYSSLLSL-YTNMGYKDEVLRIWKKMMSLFAKMND----A 315 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 315 (510)
..+-.....||+.||-+.|.+.+.+..+. |.+.|+..+.+-+.. |....-..+-++..+.+.+.|..-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44556677888888888888877765543 666676655543332 33333344555555555555543332 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+|..+- |....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 344332 3345688888888877653
No 437
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.40 E-value=17 Score=33.12 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=44.6
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW-ISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 265 (510)
..|.++.|++.|...+...++....|..-.+++.+.+++..|++=++...+. .||. .-|-.-..+..-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 3455555555555555555555555555555555555555555555554443 2221 112222223333455666666
Q ss_pred HHHHHHHccCCCC
Q 010458 266 TLKEMEKRTCRKN 278 (510)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (510)
.+....+.+..+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6555555544433
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.69 E-value=49 Score=29.82 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIK 381 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 381 (510)
|+..|....+.|++++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 439
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.49 E-value=76 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++-+|.++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555443
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.35 E-value=2.2e+02 Score=24.65 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC--cccChhhHHHHHHHHHHhcChhhHHHHHHhcccC--CCCh
Q 010458 65 EGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD--IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGP 140 (510)
Q Consensus 65 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 140 (510)
..+++...-+|.|+--|.-...+.+|.+.|..-..... ...+.-.-...+......|+.++|++....+.+. +.|.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred hhHHHHHHH----HHhCCCHHHHHHHHHH
Q 010458 141 DTCSALLHS----YVQNKKSAEAEALMEK 165 (510)
Q Consensus 141 ~~~~~l~~~----~~~~~~~~~A~~~~~~ 165 (510)
..+--|... +.+.|..++|++..+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 441
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.81 E-value=1.6e+02 Score=23.06 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 382 PCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 382 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
++..+--.+.+++.+..+ ..+.+.+++...+. . .|+ ......|.-++.+.|+++.++++++.+.+..+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 444555555566665443 34556666666641 1 222 2233444556667777777777777777666554
No 442
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.73 E-value=1.2e+02 Score=21.63 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQ 100 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 100 (510)
|-|...--.+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555444
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.73 E-value=68 Score=29.03 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
.|...+....+.|.+.+.-.++.++.. ..+.|+..|-. --.-+...++++.++.+|....+.++.++..|
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~---khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLT---KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 333333333334445555555555554 22223333321 11223344555555555555555555544444
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.04 E-value=1.5e+02 Score=22.21 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777665
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.03 E-value=2.8e+02 Score=25.52 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=33.9
Q ss_pred HHHHHHhCCCcCcHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 181 MLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 181 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
|.-+..+.|+..+|.+.|+++.+..+- -..+...++.++....-+.....++.+-.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344444677888888888777665331 11233456666666666655555555544433
No 446
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.27 E-value=3.4e+02 Score=26.27 Aligned_cols=373 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCC
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK 154 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (510)
|-++..|...|+..+|.+..+.+... +-.....-..++.+....-.-.....++.+.... +...-..+..++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vs--ffhhe~vkralv~ame~~~ae~l~l~llke~~e~--glissSq~~kGfsr~~ 293 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVS--FFHHEGVKRALVDAMEDALAEGLTLKLLKEGREE--GLISSSQMGKGFSRKG 293 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCC--chhhHHHHHHHHHHHhhhhcccceeccchhhhhh--cchhhhccccCchhhc
Q ss_pred --------CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 155 --------KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 155 --------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+...|...|+.+.-+.+.-+-.--+++-..-...|+.+. ...|++=... +|+-|...||..
T Consensus 294 ~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~----------IIqEYFlsgDt~ 362 (645)
T KOG0403|consen 294 GSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP----------IIQEYFLSGDTP 362 (645)
T ss_pred cccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH----------HHHHHHhcCChH
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC--------HHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY--------KDEV 298 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a 298 (510)
+..+.++.+--....|-...+..-+..=.+...-+.|-.++..+.-. +-++...-+.+...+-...+ .++.
T Consensus 363 Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~el 441 (645)
T KOG0403|consen 363 EVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQEL 441 (645)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHH
Q ss_pred HHHHHHH-------------HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch----HHHHHHHHHh
Q 010458 299 LRIWKKM-------------MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV----PNILLAAYIN 361 (510)
Q Consensus 299 ~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~ 361 (510)
-.++.++ .....+|....-..+=.+-.-..--....++++..-.-|....+.. ...|+.-|..
T Consensus 442 alFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~ 521 (645)
T KOG0403|consen 442 ALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYEL 521 (645)
T ss_pred HHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHh
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC------
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG------ 435 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 435 (510)
.|++.+|.+.++++--.-+. ....+.+++.+.-+.|+-...+.+++..... ...|.+.+-.+|.+-.
T Consensus 522 ~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s------glIT~nQMtkGf~RV~dsl~Dl 594 (645)
T KOG0403|consen 522 SGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS------GLITTNQMTKGFERVYDSLPDL 594 (645)
T ss_pred ccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------CceeHHHhhhhhhhhhccCccc
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 436 --DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 436 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
++..|.+.|+...+.+..+-..|..|-..|-..++
T Consensus 595 sLDvPna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 595 SLDVPNAYEKFERYVEECFQNGIISKQLRDLCPSRLR 631 (645)
T ss_pred ccCCCcHHHHHHHHHHHHHHcCchhHHhhhcchhhhc
No 447
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.97 E-value=3.3e+02 Score=26.04 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCC----CC-hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKM----RG-PDTCSALLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
..+++...-.|+.+...+.++.+++.- |. ..+ .-+.-+|.-.|++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777666666677666541 21 122 334555666677778877776554
No 448
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.73 E-value=2.1e+02 Score=26.13 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.++|+.+.+.++.|.-..+.-+...+.+.=.+.+.+.+|+..... +.-|..++..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-------~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-------PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-------hhhhHHHHHHHHH
Confidence 457777778888888888777777777777788888888887753 3336666665553
No 449
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.54 E-value=2.7e+02 Score=28.35 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEK 165 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (510)
+..|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 66776 56666677888888888743
No 450
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.65 E-value=4.6e+02 Score=27.34 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=29.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC-ChH
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK-MPL 473 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~-~a~ 473 (510)
.-++.--|+.++|..+.+++....-+ ......++..+|+..|+ .|+
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkai 556 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAI 556 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhH
Confidence 34556678888888898888765522 22234456667777776 544
No 451
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.03 E-value=4.6e+02 Score=27.09 Aligned_cols=215 Identities=13% Similarity=0.114 Sum_probs=88.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-------cCcHHHHHHHHHhC-CCCCh---hHHH
Q 010458 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-------LDKVPQMLQELKKN-TSPDV---VTYN 213 (510)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~-~~~~~---~~~~ 213 (510)
.+|-.|.++|++++|.++..+... ........+...+..|....+ -++...-|++..+. ...|+ ..|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 356668899999999999855544 334456678888888876532 12344444444433 11122 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHccCCCChhhH
Q 010458 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME-----------LPEKAATTLKEMEKRTCRKNRVAY 282 (510)
Q Consensus 214 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~ 282 (510)
++..+=....... .+..+..-|--+=-.+.+.. .+++..+.+.+.-+..+.+ ....
T Consensus 195 ilg~cD~~~~~~~------------~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 195 ILGRCDLSRRHLP------------EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHT--CCC-S-T------------TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HHhcCCccccchH------------HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 3321111011110 11112222221111111111 1222233333333333333 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHh
Q 010458 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS-GTGDPRVPNILLAAYIN 361 (510)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 361 (510)
-.....+.-.|+++.|++++-. ..+...+...+...+.-|.-.+-.+... ..+.... ..|...-+..||..|++
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 2345666778999999998876 1223334444544443332221111111 2222111 01112456778888875
Q ss_pred ---cCCHHHHHHHHHHHHhC
Q 010458 362 ---RNQLEMAESFYNRLVTK 378 (510)
Q Consensus 362 ---~g~~~~A~~~~~~~~~~ 378 (510)
..+..+|.+++--+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 35778888887766654
No 452
>PHA00425 DNA packaging protein, small subunit
Probab=38.88 E-value=1.3e+02 Score=20.71 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 436 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
+.+.|..++..++......|..||++...+.++.- .-..++||..++.-|-.+.
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF---------~isKl~pD~~iLg~la~~l 67 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKF---------QISKLQPDENILGGLAAAL 67 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcc---------cccccCCcHHHHHHHHHHH
Confidence 57788888888887766688899988887776543 1235678877766665543
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.63 E-value=3.5e+02 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=27.8
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCC-------C--ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKM-------R--GPDTCSALLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
+++..+-.|++..|+++++.+.-.. | ...++--+.-+|.-.+++..|.+.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665543221 0 12334444445555556666666555443
No 454
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=4.8e+02 Score=27.20 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYT--TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 435 (510)
++..-|+-++|..+.++|.... .|-.. -.-.+..+|+-.|+-....+++.-++. ....|+.-...+.-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs---D~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS---DVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc---ccchHHHHHHHHHheeeEec
Confidence 4445566677777777777542 21111 112345567777776666666666665 33445555555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHcCC-ChHHHHHHHHh
Q 010458 436 DIDGAEHLLVTLRNAGHVS--TEIYNSLLRTYAKAGK-MPLIIVERMQK 481 (510)
Q Consensus 436 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~-~a~~~~~~m~~ 481 (510)
+.+....+.+-+.+.--+. -.+--+|.-+|+..|. +|+.+++-|..
T Consensus 586 dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7777777766665543222 2233445555666666 77777777754
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.89 E-value=1e+02 Score=27.25 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
.+...|.+.|++++|.++|+.+... ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666677777777777666433 1224455566667777777777766655444
No 456
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=4e+02 Score=26.15 Aligned_cols=360 Identities=14% Similarity=0.068 Sum_probs=186.1
Q ss_pred ccChHHHHHHHHHHHHccC-cc----cChhhHHHHHHHHHHhc-ChhhHHHHHHhcccCCCChhhH-----HHHHHHHHh
Q 010458 84 LKRYKHALEVCEWMELQYD-IK----LVSGDYAVHLDLISKIR-GLSSAENFFENLPDKMRGPDTC-----SALLHSYVQ 152 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~-----~~l~~~~~~ 152 (510)
..+++.|..-++....... +| ..-.++..+...+.... .+..|..++++..+...+...| -.|+....-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 4566777766665543210 11 12234556666666655 7888888888877764433333 345666777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH---------hCCCcCcHHHHHHHHHhCCCCChhH------H--HHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI---------SNGQLDKVPQMLQELKKNTSPDVVT------Y--NLW 215 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~------~--~~l 215 (510)
..++..|.+++.--.+.. .|-...|..++..+. +..+++.+.....++.+...+|..- | +.-
T Consensus 140 dkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred hccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 888888888754322211 122223333222221 1223445555556666665554321 1 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh---CCC------------CCCHHHHHHHHH----H---------HHhcCChHHHHHHH
Q 010458 216 LAACASQNDKETAEKAFLELKK---TKI------------DPDWISYSTLTS----L---------YIKMELPEKAATTL 267 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~---~~~------------~~~~~~~~~l~~----~---------~~~~g~~~~A~~~~ 267 (510)
+..|.-.|+...+...++++.+ .+- .|....+..+.+ + -.-.|-+++|.++-
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t 298 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT 298 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH
Confidence 3445567887777777776532 111 122222211111 0 11234455555544
Q ss_pred HHHHHc----cCCC-ChhhHH--------HHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCh-------hhHHHHHH-HHH
Q 010458 268 KEMEKR----TCRK-NRVAYS--------SLLSLYTNMGYKDEVLRIWKKMMSLFA-KMND-------AEYTCVIS-SLV 325 (510)
Q Consensus 268 ~~~~~~----~~~~-~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-------~~~~~l~~-~~~ 325 (510)
+++... .-.+ ....++ .++-+-.-.|++.+|++-+.+|.+-.. .|.. .....++. -++
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 444322 1111 122222 222222347999999999999876422 2221 11223333 345
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--------HHHH--
Q 010458 326 KLGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL--------LTWG-- 393 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--------l~~~-- 393 (510)
..+.++.|+.-|....+.--..|...+ ..+...|.+.|+.+.-.++++.+-. |+..++.. ++.+
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHH
Confidence 678899999988887764333343332 2355678888876665555554432 22222211 1122
Q ss_pred HHhcCCHHHHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRK---WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
....+++.+|..++.+-++..+. .+...-....+...+...|+..++.+...-..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 24578999999999998864100 11111223334455667889988888776543
No 457
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=2.7e+02 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.|-.+|....+.|.|.++++++.+. .| ++-+-..+..+....|+-++|+........
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3444455555555555555555431 22 222223333444445555555555554443
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.69 E-value=5.5e+02 Score=28.77 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 197 MLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLEL-------KKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 197 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
++...... .++....|..+...+.+.++.++|...-.+. ....-.-+...|..+.......+....|...+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 55533333 4445666777777777777777777665442 111111233445555555556666666666666
Q ss_pred HHHHc-----cC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 269 EMEKR-----TC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 269 ~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
..... |. +|...+++.+-..+...++.+.|..+++.+.+
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55443 21 22233334444444445666667776666654
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.61 E-value=3.9e+02 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHHccCCCChh
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRV 280 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~ 280 (510)
++.+.|+.++..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 44455555555555444444433
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.49 E-value=5e+02 Score=27.14 Aligned_cols=25 Identities=8% Similarity=-0.170 Sum_probs=18.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+-.-.+++..|.+.-+.|.+.+++.
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCce
Confidence 3445678888888888888887763
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.32 E-value=2.4e+02 Score=23.12 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=30.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC
Q 010458 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294 (510)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (510)
.+.|+..+..-. .++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 444554443332 3444444445555666666666666655555555555555555443
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.09 E-value=3.9e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.7
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 010458 221 SQNDKETAEKAFLELKKT 238 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~ 238 (510)
..+++..|.++|+.+.+.
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 455555555555555444
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.07 E-value=6.5e+02 Score=27.99 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHH
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSP----DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYST 249 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ 249 (510)
|...++.+-+.+..+.+.++-....+..++ -..+++.+.+.....|.+-+|...+-. .||. .....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHH
Confidence 556677777777788888777777666333 234667777777888888877766533 2333 23455
Q ss_pred HHHHHHhcCChH------------HHHH-HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010458 250 LTSLYIKMELPE------------KAAT-TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301 (510)
Q Consensus 250 l~~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 301 (510)
++-.++.+|.++ +... +++..-+..+......|+.|-..+...+++.+|-.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666677776654 3333 333333332222334566666666778888876554
No 464
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.00 E-value=4e+02 Score=25.61 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--CC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKK--TK-----IDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
+...+++.++-.||+..|+++++.+.- .+ ..-...++--+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888766521 11 11123445566777778888888888887764
No 465
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.14 E-value=1.5e+02 Score=22.18 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=21.6
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCc
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDI 103 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~ 103 (510)
+++.+.++...++|+++++.|.++|.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEI 93 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEI 93 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCC
Confidence 456677778889999999999998844
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.37 E-value=2.8e+02 Score=23.21 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCCh--hh-----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 295 KDEVLRIWKKMMSLFAKMND--AE-----YTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
.+.|+.+|+.+.+.-..|.. .. -...+-.|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45566677666655333211 11 12234456777777777777777664
No 467
>PRK09857 putative transposase; Provisional
Probab=34.25 E-value=3e+02 Score=25.08 Aligned_cols=26 Identities=15% Similarity=-0.056 Sum_probs=12.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
..-+.+.|.-+++.++..+|...|+.
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333344444455555555555544
No 468
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.79 E-value=1.8e+02 Score=20.83 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
|...-..+...+...|++++|++.+-.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.76 E-value=1.6e+02 Score=20.43 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
+++.+.++.-.++|+++++-+.+.|-.+++.-+.|=....
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~~~~~ 76 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALRVTLV 76 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHhhHH
Confidence 4556777888899999999999988877766555544433
No 470
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.74 E-value=3.9e+02 Score=24.69 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
..|..+..+.|+..+|.+.|+++.+. .|-.. .-..++.++....-+.+...++.+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555566788888888888887764 22222 234577777777777777777666554
No 471
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.45 E-value=2.1e+02 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
+++-+.++...++|+++++-|.+.|-.+...-+.|-..+.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 3555778888999999999999998877766666655554443
No 472
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.24 E-value=3.4e+02 Score=23.94 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh------CCCCCCcchHH-----------HHHHHHHhCCCcCcHHHHHHHHHhCC
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSE------CGFLKCPLPYN-----------HMLNLYISNGQLDKVPQMLQELKKNT 205 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~p~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~ 205 (510)
...-.+-+.+.|++.+|..-|.+..- ..-+|-..-|. ....++...|++-++++...++....
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33344456678888888877766431 11234433332 22234445566666777777766666
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
+.|+.+|-.-..+.+..-+.++|..=|....+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 667777766666666666777777777666654
No 473
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=32.90 E-value=1.9e+02 Score=21.91 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHhhhcccCCcHHHHHHHHHHcC
Q 010458 44 RLLSLVYAKRSAAITMRKWKEEG 66 (510)
Q Consensus 44 ~l~~~~~~~~~a~~~~~~~~~~~ 66 (510)
..-.++.+...+..++++|.+.|
T Consensus 25 lA~~l~cS~Rn~r~lLkkm~~~g 47 (115)
T PF12793_consen 25 LAELLFCSRRNARTLLKKMQEEG 47 (115)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC
Confidence 33334445566666666666665
No 474
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.84 E-value=4.6e+02 Score=25.34 Aligned_cols=24 Identities=4% Similarity=-0.299 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHHHHhccCCCCcc
Q 010458 327 LGEFEKAENIYDEWESISGTGDPR 350 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~ 350 (510)
..+.+.|..++..|.+.|..|...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 356677777777777666555433
No 475
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.78 E-value=4.5e+02 Score=25.20 Aligned_cols=93 Identities=12% Similarity=-0.025 Sum_probs=47.1
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCCChhhHH
Q 010458 247 YSTLTSLYIK---MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-----KDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 247 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
+..+++++.+ ..+++.|+-++-.|.+.|-.|-...-..++-++-.-|. ..-|...++.....|.+-......
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LA 328 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALA 328 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3345555544 45677777777777777766665555555555555443 223455555555555433333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 010458 319 CVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~ 339 (510)
..+-.++..-+-..+...++.
T Consensus 329 qavvyLA~aPKSNavY~A~~~ 349 (436)
T COG2256 329 QAVVYLALAPKSNAVYTAINA 349 (436)
T ss_pred HHHHHHHhCCccHHHHHHHHH
Confidence 333333333333333333333
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.72 E-value=3.1e+02 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+.++..+.-.|+++.|.++|.-++.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 34455555555555555555555554
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.65 E-value=2.5e+02 Score=22.28 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKM-ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+.|+..+..- ..++..+... +..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344455444332 2334444433 345566666666666655555555444455554444
No 478
>PRK09857 putative transposase; Provisional
Probab=32.64 E-value=3.3e+02 Score=24.85 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCC
Q 010458 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMD 487 (510)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd 487 (510)
..++.-..+.|+.++-.++++.+.+..+...+..-++..-+.+.|. .+..+..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444433455555555666655555433322333345555555555 45666777777776655
No 479
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.62 E-value=3.9e+02 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHh
Q 010458 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203 (510)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 203 (510)
++|+.+.+.++.|.-.++..+.-.+.+.=.+..++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3455555555555555555555555555555555555555544
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.44 E-value=2.5e+02 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 010458 390 LTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
|.-++.+.++++++.++.+..+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444455555555544444
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.16 E-value=6.2e+02 Score=26.56 Aligned_cols=189 Identities=13% Similarity=0.170 Sum_probs=99.3
Q ss_pred CcHHHHHHHHHhC-CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHhc
Q 010458 192 DKVPQMLQELKKN-TSP---DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS----------YSTLTSLYIKM 257 (510)
Q Consensus 192 ~~a~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------~~~l~~~~~~~ 257 (510)
++-...+.+|... ..| ...+...++-.|....|++...++.+.++.. ||..- |...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 3455667777776 444 4456666777777888888888888887653 33221 22222323345
Q ss_pred CChHHHHHHHHHHHHc--cCCCChhhH-----HH--HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHH
Q 010458 258 ELPEKAATTLKEMEKR--TCRKNRVAY-----SS--LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLV 325 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~--~~~~~~~~~-----~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 325 (510)
|+-++|+.+.-.+.+. .+.||..+. .- +-+.|...+..+.|.+.|++.-+ +.|...+ +..++.+..
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 7778888877777654 344554322 11 11223344556667777777655 4555433 333332221
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010458 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 405 (510)
..++...++-.- | ..|-..+.+.|.+++...+|+-. + .+.+-.-.+++.+|++
T Consensus 335 --~~Fens~Elq~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 335 --EHFENSLELQQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQ 387 (1226)
T ss_pred --hhccchHHHHHH----H--------HHHHHHhhccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHH
Confidence 122222222111 1 11222334566666655555322 1 1222334567777877
Q ss_pred HHHHHhh
Q 010458 406 CFKKAIG 412 (510)
Q Consensus 406 ~~~~~~~ 412 (510)
.-+.|.+
T Consensus 388 Aae~mfK 394 (1226)
T KOG4279|consen 388 AAEMMFK 394 (1226)
T ss_pred HHHHHhc
Confidence 7777774
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.74 E-value=2.8e+02 Score=22.74 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=33.3
Q ss_pred HHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
+.+.|..++. .-..++..+...++.-.|.++++.+.+.+..++..|..--+..+...|-+
T Consensus 17 L~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444555332 33345555555555556777777777766666665555555555555543
No 483
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.13 E-value=2e+02 Score=20.48 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
++|+-....|+..|...|..++..+...=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555556666666666666665555555555566655543
No 484
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.50 E-value=4.3e+02 Score=24.23 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFA----KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
.+.|.+.|+.....+. ..+......+.....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3456666776665322 23334445555555566665554445444442 2345556667777777777777777
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 010458 371 FYNRLVTKG-IKPCYTTWELLTWGYLKKGQ--MEKVLECFKKAI 411 (510)
Q Consensus 371 ~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 411 (510)
+++.....+ +++. .. ..++.++...+. .+.+++++..-.
T Consensus 223 ~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~n~ 264 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKENW 264 (324)
T ss_dssp HHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHHCH
T ss_pred HHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 777777643 3332 22 333334442333 256666655433
No 485
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.50 E-value=6.6e+02 Score=26.42 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC--ChhhHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR--GPDTCSALLH 148 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~ 148 (510)
...+..+|..+...|++++|-...-.|... +...|......+...++.... +.-++...| ++.+|..++.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLv 463 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLV 463 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHH
Confidence 344667777777777777777777766532 445555555555555554432 222333222 4677777777
Q ss_pred HHHh
Q 010458 149 SYVQ 152 (510)
Q Consensus 149 ~~~~ 152 (510)
.+..
T Consensus 464 e~L~ 467 (846)
T KOG2066|consen 464 EFLA 467 (846)
T ss_pred HHHH
Confidence 7665
No 486
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.41 E-value=1.4e+02 Score=25.98 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+.++.+.+.+++++..+.-+. ....|-.+...-.+.|+++.|.+.|++.++
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3445555555666655554222 334555555555555666666666655553
No 487
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.39 E-value=5.5e+02 Score=25.46 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=54.3
Q ss_pred CcHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWK-EEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
.+..+.++... ..|+..+..+...++.. ..|+...|+.+++++.... ...-++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~~~l-------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT---DSKLTGVKIRKMI-------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC---CCCcCHHHHHHHh--------------
Confidence 34444444433 34666677766665543 4577778888877754322 1111222221111
Q ss_pred hcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010458 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 174 (510)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 174 (510)
...+......++......+....|+.+++++.+.|..|.
T Consensus 244 ----g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 244 ----GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred ----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 012444555666666555556788888888888885543
No 488
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.69 E-value=8.3e+02 Score=27.27 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcc--CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQY--DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
|..+++.+-+.+..+.+.++...+.+.- +.|.-+..++.+.+.....|.+-+|-..+-.-+...........++..++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766665531 11122234556666666777777776665554433222445566666666
Q ss_pred hCCCHHH------------HHH-HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 152 QNKKSAE------------AEA-LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 152 ~~~~~~~------------A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
.+|.++. ... +++..-+........-|+.|-..+...+++.+|-.++-+
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 6666542 222 222222222222233455555555566677666554433
No 489
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.68 E-value=6e+02 Score=27.06 Aligned_cols=112 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CccHHHHHhhhcccC---CcHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-----------
Q 010458 38 RDTLGRRLLSLVYAK---RSAAITMRKWKEE-GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD----------- 102 (510)
Q Consensus 38 ~~~~~~~l~~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------- 102 (510)
+..+..+....-+.. ++..+.++...+. |+..+......+++.. .|+...|+.++++....+.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~ 240 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGM 240 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Q ss_pred -cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHh
Q 010458 103 -IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQ 152 (510)
Q Consensus 103 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 152 (510)
-..+......+++.+.. |+..+++..++++...+.+ ......|+..+.+
T Consensus 241 LG~~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~ 291 (830)
T PRK07003 241 LGALDQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFSTALQDLASLLHR 291 (830)
T ss_pred hCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.12 E-value=2.3e+02 Score=20.74 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=11.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.|.+.|+-+.|.+-|+.=+..-|
T Consensus 81 Lys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCc
Confidence 34555555555555554444433
No 491
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.81 E-value=6.9e+02 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
...++..+. .++...++.+.+.+.+.|.
T Consensus 254 i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~ 281 (700)
T PRK12323 254 LVRLLDALA-AEDGAALLAIADEMAGRSL 281 (700)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Confidence 344444333 4666666666666666553
No 492
>PRK14700 recombination factor protein RarA; Provisional
Probab=28.80 E-value=4.6e+02 Score=23.99 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=26.0
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 214 LWLAACAS---QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 214 ~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
.+++++.+ -.|.+.|+-++.+|.+.|-.|....-..++.++-.-|
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34444433 3567777777777777776665555555554444444
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.71 E-value=3.6e+02 Score=22.76 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHHHH
Q 010458 359 YINRNQLEMAESFYNRL 375 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~ 375 (510)
....|++++|..-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 33444455554444444
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.13 E-value=3.1e+02 Score=21.80 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=40.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc-cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh
Q 010458 59 MRKWKEEGHTVHKYELNRIVRELRKL-KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (510)
-+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+ .+.+..+....++.+...|-+
T Consensus 5 ~~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 5 NTALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCCE
Confidence 34456667766544 34555555554 46778888888888765 345666666667777777754
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.09 E-value=6.4e+02 Score=25.48 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHH
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIGSVR-KWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 433 (510)
+..+.+.|-+..|.++-+-+.+..+.-|+.....+|..|+ +..++.-.+++++....... ..-||-.--.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455677888888888888887655546666666776664 46677777777776643200 244555544555555655
Q ss_pred cCC---HHHHHHHHHHHHhCC
Q 010458 434 QGD---IDGAEHLLVTLRNAG 451 (510)
Q Consensus 434 ~g~---~~~A~~~~~~~~~~~ 451 (510)
... .+.|...+.++...-
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhC
Confidence 444 455555666555543
No 496
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.08 E-value=1.8e+02 Score=19.07 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH-----HHcCCHHHHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL-----EEQGDIDGAEHL 443 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~ 443 (510)
...|++-+|-++++.+-.. .-.|....+..+|... .+.|+.+.|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~--~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKA--APGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCC--T-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHH--CCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3455666666666665532 2222334444444432 245555555544
No 497
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.10 E-value=7.1e+02 Score=25.70 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHH
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESIS--GTGDPRVPNILLAAYINRNQLE------MAESFYNRLVTKGIKPCYTTWEL 389 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~ 389 (510)
.++..+|...|++..+.++++.....+ -+.-...+|..++...+.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 377788888888888888888777532 1222345677777777777543 2223333222 3345566666
Q ss_pred HHHHH
Q 010458 390 LTWGY 394 (510)
Q Consensus 390 l~~~~ 394 (510)
|+.+-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 55543
No 498
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.73 E-value=8.8e+02 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHh
Q 010458 281 AYSSLLSLYTNMG--YKDEVLRIWKKMMSL 308 (510)
Q Consensus 281 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 308 (510)
-...++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455666676666 667777777766654
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.65 E-value=2.3e+02 Score=21.02 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCC
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG--DIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~ 454 (510)
..++..|...++.++|...++++.. . .-.......++..+...+ ..+....++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~---~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL---P-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT----G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC---C-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 4566777888899999998888632 1 112333444444444432 2344556666666666654
No 500
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=26.32 E-value=6.9e+02 Score=25.29 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred cChhhHHHHHHhcccCCCChh-----hHHHHHHHHHhC-------------CCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 121 RGLSSAENFFENLPDKMRGPD-----TCSALLHSYVQN-------------KKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~~~~~-------------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
+..+++..+.....+..|+.. .+...+.-|.+. |++++|+...+.....+-..-+.-....+
T Consensus 272 ~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~l 351 (547)
T PF14929_consen 272 QPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAHL 351 (547)
T ss_pred CcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHHH
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh-----
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIK----- 256 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~----- 256 (510)
.-++...........|+...+..|--..+..-++..+.. ...+.++++.+ ......|...+|--+..++.+
T Consensus 352 le~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~ 428 (547)
T PF14929_consen 352 LEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRF 428 (547)
T ss_pred HHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccc
Q ss_pred c---CChHHHHHHHHHHHHc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 257 M---ELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 257 ~---g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
. .+...+.+++-.+.+. +..-+...|..+.+..-+....+-..+.|+.
T Consensus 429 ~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~~~W~~ 480 (547)
T PF14929_consen 429 EDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVREEWRS 480 (547)
T ss_pred cccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchHHHHHH
Done!