Query 010458
Match_columns 510
No_of_seqs 684 out of 3322
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 07:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-37 3.9E-42 314.7 40.8 427 53-494 101-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8E-38 2.7E-42 315.9 38.6 418 68-498 81-560 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-31 1.5E-35 251.6 47.0 382 77-470 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1E-28 3.4E-33 235.4 43.0 371 53-436 16-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.6E-30 8.8E-35 250.4 24.6 186 211-396 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.8E-30 6.2E-35 251.5 22.9 206 157-362 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.6E-25 5.6E-30 221.4 37.1 401 72-482 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 3.8E-25 1.3E-29 215.0 36.2 314 54-377 10-357 (450)
9 2gw1_A Mitochondrial precursor 99.9 9.9E-25 3.4E-29 215.8 35.4 368 107-482 6-444 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 3.7E-24 1.3E-28 208.1 38.3 301 104-411 23-356 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.2E-23 1.4E-27 205.4 39.0 229 248-481 247-490 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.6E-22 1.9E-26 197.2 36.9 377 70-459 24-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 179.7 39.4 317 143-467 6-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4.9E-21 1.7E-25 179.8 36.8 329 70-433 2-352 (359)
15 3hym_B Cell division cycle pro 99.9 1E-20 3.5E-25 175.5 32.0 284 140-465 22-314 (330)
16 2ooe_A Cleavage stimulation fa 99.9 1.8E-19 6.1E-24 178.6 41.3 412 59-482 2-492 (530)
17 2xm6_A Protein corresponding t 99.9 1.3E-18 4.3E-23 170.7 46.2 382 53-467 24-452 (490)
18 3hym_B Cell division cycle pro 99.9 1.2E-19 4.1E-24 168.3 34.1 287 103-394 18-314 (330)
19 1fch_A Peroxisomal targeting s 99.9 4.8E-20 1.6E-24 173.9 27.3 283 188-477 38-354 (368)
20 1fch_A Peroxisomal targeting s 99.9 4.1E-20 1.4E-24 174.4 26.2 267 177-447 66-356 (368)
21 2xm6_A Protein corresponding t 99.9 2.9E-17 9.9E-22 161.0 46.1 364 90-485 26-435 (490)
22 2ooe_A Cleavage stimulation fa 99.8 2E-17 6.9E-22 163.8 40.1 391 94-496 2-471 (530)
23 4g1t_A Interferon-induced prot 99.8 2.6E-18 8.8E-23 167.9 32.7 389 68-490 48-468 (472)
24 4eqf_A PEX5-related protein; a 99.8 1.6E-19 5.5E-24 170.1 21.9 257 208-470 64-342 (365)
25 4eqf_A PEX5-related protein; a 99.8 4.7E-19 1.6E-23 166.9 25.0 268 175-446 65-352 (365)
26 4g1t_A Interferon-induced prot 99.8 3.2E-17 1.1E-21 160.1 35.9 329 104-456 48-407 (472)
27 1b89_A Protein (clathrin heavy 99.8 9.1E-20 3.1E-24 168.4 15.5 284 83-407 15-305 (449)
28 1b89_A Protein (clathrin heavy 99.8 7.8E-19 2.7E-23 162.2 21.6 370 48-470 15-403 (449)
29 3cv0_A Peroxisome targeting si 99.8 2.3E-18 7.9E-23 159.4 24.8 278 70-374 20-311 (327)
30 3cv0_A Peroxisome targeting si 99.8 6.9E-18 2.4E-22 156.2 27.2 261 178-447 24-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 3.1E-17 1.1E-21 148.5 23.8 246 117-377 9-263 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 9.3E-17 3.2E-21 145.3 25.7 259 183-457 7-271 (291)
33 1xi4_A Clathrin heavy chain; a 99.8 8.4E-15 2.9E-19 150.9 41.2 353 69-477 983-1340(1630)
34 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.5E-19 150.3 41.0 306 120-469 1089-1415(1630)
35 3uq3_A Heat shock protein STI1 99.8 3.1E-16 1.1E-20 139.6 24.4 238 209-462 5-254 (258)
36 3e4b_A ALGK; tetratricopeptide 99.7 4.7E-16 1.6E-20 150.0 26.7 346 76-454 8-391 (452)
37 3spa_A Mtrpol, DNA-directed RN 99.7 9.2E-18 3.2E-22 167.4 14.1 163 208-375 126-307 (1134)
38 3uq3_A Heat shock protein STI1 99.7 1.3E-15 4.6E-20 135.4 25.5 240 244-498 5-256 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.7 9.3E-18 3.2E-22 167.4 11.3 166 241-411 124-308 (1134)
40 2pl2_A Hypothetical conserved 99.7 4.2E-16 1.4E-20 134.7 19.2 198 104-305 2-211 (217)
41 3u4t_A TPR repeat-containing p 99.7 4.5E-15 1.5E-19 133.3 24.7 231 73-307 5-249 (272)
42 3u4t_A TPR repeat-containing p 99.7 4.5E-15 1.5E-19 133.3 24.6 234 106-343 2-250 (272)
43 2h6f_A Protein farnesyltransfe 99.7 6.9E-15 2.4E-19 137.5 25.5 251 208-467 96-365 (382)
44 2pl2_A Hypothetical conserved 99.7 1.9E-15 6.7E-20 130.5 20.3 197 208-410 4-211 (217)
45 4e6h_A MRNA 3'-END-processing 99.7 6.9E-13 2.4E-17 132.3 40.5 437 53-499 49-585 (679)
46 2ho1_A Type 4 fimbrial biogene 99.7 3.7E-14 1.3E-18 125.7 27.3 210 244-459 37-247 (252)
47 1ouv_A Conserved hypothetical 99.7 1.3E-13 4.6E-18 123.8 30.3 226 208-453 5-254 (273)
48 2vq2_A PILW, putative fimbrial 99.7 7E-14 2.4E-18 121.4 27.2 210 244-459 8-220 (225)
49 2h6f_A Protein farnesyltransfe 99.7 1.4E-14 4.6E-19 135.5 23.5 229 107-340 97-344 (382)
50 2q7f_A YRRB protein; TPR, prot 99.7 6.4E-15 2.2E-19 129.8 20.3 212 245-463 24-235 (243)
51 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-14 4.8E-19 139.7 24.0 366 53-449 20-420 (452)
52 2ho1_A Type 4 fimbrial biogene 99.7 2.6E-14 8.7E-19 126.8 23.8 200 71-273 37-238 (252)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.5E-15 1.5E-19 133.5 18.0 27 385-411 216-242 (275)
54 2vq2_A PILW, putative fimbrial 99.7 4.2E-14 1.4E-18 122.8 23.5 201 70-272 7-210 (225)
55 2q7f_A YRRB protein; TPR, prot 99.6 5.3E-15 1.8E-19 130.3 17.3 200 70-273 22-222 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.9E-13 6.4E-18 122.8 26.2 241 221-470 17-261 (275)
57 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.5E-17 117.3 31.7 222 243-483 5-252 (273)
58 3sf4_A G-protein-signaling mod 99.6 1.7E-14 5.8E-19 137.6 19.9 224 246-470 89-362 (406)
59 3sf4_A G-protein-signaling mod 99.6 1.9E-14 6.5E-19 137.2 17.5 96 70-167 8-114 (406)
60 4a1s_A PINS, partner of inscut 99.6 3.7E-14 1.3E-18 135.7 18.2 279 142-452 50-374 (411)
61 4a1s_A PINS, partner of inscut 99.6 1.6E-14 5.3E-19 138.3 15.3 239 72-341 49-330 (411)
62 3ro2_A PINS homolog, G-protein 99.6 2.5E-14 8.6E-19 132.5 14.8 61 352-412 266-331 (338)
63 2ond_A Cleavage stimulation fa 99.6 2.1E-12 7.1E-17 118.1 27.3 216 88-308 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.6 1.7E-13 5.7E-18 126.8 19.3 206 246-451 85-333 (338)
65 2ond_A Cleavage stimulation fa 99.5 9.7E-12 3.3E-16 113.6 29.2 220 226-453 33-273 (308)
66 3ulq_A Response regulator aspa 99.5 1.1E-12 3.6E-17 124.2 23.4 231 215-449 109-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 8.3E-13 2.8E-17 110.7 20.0 165 140-307 5-169 (184)
68 3ulq_A Response regulator aspa 99.5 6E-13 2E-17 125.9 20.6 227 81-307 22-292 (383)
69 4abn_A Tetratricopeptide repea 99.5 9.3E-14 3.2E-18 134.9 15.2 211 87-302 84-315 (474)
70 3vtx_A MAMA; tetratricopeptide 99.5 2.8E-12 9.7E-17 107.5 22.2 164 244-411 5-168 (184)
71 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.2E-15 114.4 37.2 392 87-484 48-535 (679)
72 4abn_A Tetratricopeptide repea 99.5 2.9E-13 9.8E-18 131.4 16.3 213 53-270 85-318 (474)
73 3q15_A PSP28, response regulat 99.5 1.9E-11 6.3E-16 115.4 27.4 233 212-449 104-364 (378)
74 3nf1_A KLC 1, kinesin light ch 99.5 2E-13 6.9E-18 125.0 11.3 240 208-450 26-307 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.2E-18 126.4 9.3 168 69-236 25-222 (311)
76 1hz4_A MALT regulatory protein 99.5 8.9E-11 3.1E-15 110.5 29.2 267 146-412 20-321 (373)
77 3q15_A PSP28, response regulat 99.5 4.4E-11 1.5E-15 112.8 26.9 239 68-307 7-289 (378)
78 1hz4_A MALT regulatory protein 99.4 1.2E-10 4.1E-15 109.6 27.3 272 179-450 18-322 (373)
79 4i17_A Hypothetical protein; T 99.4 4.4E-11 1.5E-15 104.0 21.7 209 242-464 5-223 (228)
80 3as5_A MAMA; tetratricopeptide 99.4 3.5E-11 1.2E-15 100.6 19.2 164 108-273 9-173 (186)
81 1qqe_A Vesicular transport pro 99.4 5.6E-11 1.9E-15 107.6 21.3 237 192-452 2-271 (292)
82 3as5_A MAMA; tetratricopeptide 99.4 3.3E-11 1.1E-15 100.7 18.2 164 141-307 9-172 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.5E-16 125.4 16.6 167 68-237 6-173 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.4 1.4E-11 4.9E-16 124.3 17.1 169 103-273 5-174 (723)
85 4i17_A Hypothetical protein; T 99.3 8.1E-11 2.8E-15 102.3 18.3 148 69-220 5-164 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 6.9E-11 2.4E-15 106.2 15.8 157 186-342 12-197 (283)
87 3edt_B KLC 2, kinesin light ch 99.3 1.3E-10 4.5E-15 104.3 16.7 227 221-450 13-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.2 3.1E-09 1E-13 94.3 23.5 159 317-481 103-281 (310)
89 3mv2_B Coatomer subunit epsilo 99.2 5.2E-09 1.8E-13 92.8 23.2 79 228-307 85-164 (310)
90 1qqe_A Vesicular transport pro 99.2 1.6E-09 5.4E-14 98.0 20.1 208 190-411 32-267 (292)
91 3qky_A Outer membrane assembly 99.2 5.5E-10 1.9E-14 99.3 16.3 209 68-297 12-250 (261)
92 2uy1_A Cleavage stimulation fa 99.2 4.9E-08 1.7E-12 94.6 30.9 363 83-481 6-412 (493)
93 3qky_A Outer membrane assembly 99.2 3.7E-09 1.3E-13 93.8 21.4 190 245-454 16-228 (261)
94 4ga2_A E3 SUMO-protein ligase 99.2 2.2E-10 7.6E-15 92.0 10.9 144 78-224 4-149 (150)
95 2pzi_A Probable serine/threoni 99.1 6E-10 2.1E-14 113.1 16.3 173 82-259 402-583 (681)
96 3dra_A Protein farnesyltransfe 99.1 5.3E-08 1.8E-12 87.2 27.0 168 293-463 124-301 (306)
97 3urz_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 90.6 18.2 123 285-411 60-184 (208)
98 4ga2_A E3 SUMO-protein ligase 99.1 2.7E-10 9.2E-15 91.6 10.8 144 322-470 5-149 (150)
99 2fo7_A Synthetic consensus TPR 99.1 2.4E-09 8.1E-14 83.9 16.2 125 214-341 6-130 (136)
100 2r5s_A Uncharacterized protein 99.1 1.1E-09 3.7E-14 90.8 14.6 163 108-272 7-172 (176)
101 3qou_A Protein YBBN; thioredox 99.1 1.2E-09 4.1E-14 98.4 16.0 164 106-271 116-282 (287)
102 3urz_A Uncharacterized protein 99.1 1.1E-09 3.7E-14 93.5 14.7 180 72-273 5-186 (208)
103 3dra_A Protein farnesyltransfe 99.1 3.9E-08 1.3E-12 88.1 24.7 219 85-307 47-286 (306)
104 2fo7_A Synthetic consensus TPR 99.1 4.9E-09 1.7E-13 82.1 16.8 127 319-450 6-132 (136)
105 2yhc_A BAMD, UPF0169 lipoprote 99.1 9.8E-09 3.4E-13 88.8 20.0 189 243-454 3-217 (225)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.8E-09 2E-13 90.2 17.5 202 71-309 4-214 (225)
107 2pzi_A Probable serine/threoni 99.1 3.1E-09 1E-13 107.9 18.0 173 255-436 402-583 (681)
108 2ifu_A Gamma-SNAP; membrane fu 99.1 6.9E-09 2.3E-13 94.5 17.3 130 281-411 78-222 (307)
109 2r5s_A Uncharacterized protein 99.0 2E-09 6.7E-14 89.2 12.4 161 73-236 8-171 (176)
110 2uy1_A Cleavage stimulation fa 99.0 2.8E-07 9.7E-12 89.2 29.2 204 226-449 196-412 (493)
111 3rjv_A Putative SEL1 repeat pr 99.0 1.6E-08 5.5E-13 86.4 17.5 177 53-239 3-198 (212)
112 3qou_A Protein YBBN; thioredox 99.0 6.3E-09 2.1E-13 93.7 15.6 167 139-307 116-283 (287)
113 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-08 5.7E-13 86.3 16.5 139 90-237 5-157 (212)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 7.8E-09 2.7E-13 94.1 15.2 95 84-202 4-103 (307)
115 2vsy_A XCC0866; transferase, g 99.0 2.5E-08 8.4E-13 99.4 19.5 151 189-342 3-156 (568)
116 2vsy_A XCC0866; transferase, g 99.0 1.3E-08 4.6E-13 101.3 17.3 153 257-413 2-157 (568)
117 4gco_A Protein STI-1; structur 98.9 4.3E-08 1.5E-12 75.8 14.6 111 350-464 14-124 (126)
118 4f3v_A ESX-1 secretion system 98.9 6.4E-08 2.2E-12 84.7 15.6 189 83-275 18-239 (282)
119 3q7a_A Farnesyltransferase alp 98.9 7.1E-07 2.4E-11 80.8 22.7 172 84-259 67-257 (349)
120 3q7a_A Farnesyltransferase alp 98.9 1.5E-06 5.1E-11 78.7 24.3 244 190-464 69-346 (349)
121 3u3w_A Transcriptional activat 98.8 5.7E-07 2E-11 81.1 21.7 162 250-411 81-264 (293)
122 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.5E-12 72.6 14.8 117 349-469 9-125 (125)
123 3u3w_A Transcriptional activat 98.8 2E-07 6.9E-12 84.1 17.7 89 114-202 82-182 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.6E-07 8.9E-12 78.9 17.3 126 111-239 10-151 (213)
125 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.8E-12 74.1 13.7 119 348-470 15-133 (133)
126 2c2l_A CHIP, carboxy terminus 98.8 3.3E-08 1.1E-12 88.6 11.9 193 69-272 2-198 (281)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.5E-07 1.9E-11 76.8 19.2 128 212-344 9-151 (213)
128 2qfc_A PLCR protein; TPR, HTH, 98.8 3.7E-07 1.3E-11 82.4 18.9 127 109-235 77-222 (293)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.5E-11 78.7 21.6 169 281-449 77-265 (293)
130 3dss_A Geranylgeranyl transfer 98.8 5.5E-06 1.9E-10 74.7 24.5 251 186-465 40-319 (331)
131 2vyi_A SGTA protein; chaperone 98.8 3.2E-07 1.1E-11 71.1 14.7 118 349-470 12-129 (131)
132 2e2e_A Formate-dependent nitri 98.8 2E-07 6.8E-12 77.0 14.3 121 186-308 21-144 (177)
133 2c2l_A CHIP, carboxy terminus 98.8 1.1E-07 3.9E-12 85.0 13.7 194 243-449 3-198 (281)
134 4gco_A Protein STI-1; structur 98.7 1.9E-07 6.5E-12 72.1 13.0 95 211-307 15-109 (126)
135 4f3v_A ESX-1 secretion system 98.7 6.1E-08 2.1E-12 84.8 11.2 198 256-462 18-248 (282)
136 3gyz_A Chaperone protein IPGC; 98.7 2E-07 6.7E-12 74.4 13.2 97 72-170 37-134 (151)
137 1a17_A Serine/threonine protei 98.7 3.5E-07 1.2E-11 74.4 14.7 94 212-307 16-109 (166)
138 1p5q_A FKBP52, FK506-binding p 98.7 3.5E-08 1.2E-12 90.9 8.7 164 120-305 126-291 (336)
139 3gyz_A Chaperone protein IPGC; 98.7 4.5E-08 1.5E-12 78.1 8.2 107 131-238 26-133 (151)
140 1a17_A Serine/threonine protei 98.7 6.2E-07 2.1E-11 72.9 15.2 127 316-447 15-143 (166)
141 2lni_A Stress-induced-phosphop 98.7 3.7E-07 1.3E-11 71.0 13.3 92 180-272 21-112 (133)
142 3gw4_A Uncharacterized protein 98.7 2.5E-07 8.6E-12 78.2 13.1 23 354-376 152-174 (203)
143 3gw4_A Uncharacterized protein 98.7 4.5E-07 1.5E-11 76.6 14.6 63 351-413 109-176 (203)
144 1p5q_A FKBP52, FK506-binding p 98.7 2E-08 6.8E-13 92.5 6.4 141 85-228 127-283 (336)
145 1na0_A Designed protein CTPR3; 98.7 6E-07 2.1E-11 68.8 13.9 95 211-307 11-105 (125)
146 2vgx_A Chaperone SYCD; alterna 98.7 1.8E-07 6.1E-12 74.7 11.0 99 208-308 20-118 (148)
147 2vgx_A Chaperone SYCD; alterna 98.7 1.3E-07 4.4E-12 75.5 10.1 102 349-454 21-122 (148)
148 1elw_A TPR1-domain of HOP; HOP 98.6 1E-06 3.5E-11 66.7 14.4 111 350-464 5-115 (118)
149 3upv_A Heat shock protein STI1 98.6 9.6E-07 3.3E-11 68.1 14.2 110 351-464 6-121 (126)
150 2vyi_A SGTA protein; chaperone 98.6 4.7E-07 1.6E-11 70.1 12.4 95 211-307 14-108 (131)
151 2fbn_A 70 kDa peptidylprolyl i 98.6 1E-07 3.5E-12 80.4 8.0 171 114-305 11-183 (198)
152 2fbn_A 70 kDa peptidylprolyl i 98.6 1.4E-07 4.6E-12 79.7 8.6 128 352-482 41-186 (198)
153 3dss_A Geranylgeranyl transfer 98.6 3E-05 1E-09 69.9 23.8 138 82-222 40-192 (331)
154 2e2e_A Formate-dependent nitri 98.6 1.9E-06 6.5E-11 71.0 14.6 115 53-170 27-145 (177)
155 2dba_A Smooth muscle cell asso 98.5 2.5E-06 8.6E-11 67.7 14.6 113 348-465 27-143 (148)
156 2xcb_A PCRH, regulatory protei 98.5 7.8E-07 2.7E-11 70.4 11.1 99 208-308 17-115 (142)
157 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.1E-11 69.2 12.0 98 352-453 21-118 (142)
158 4gcn_A Protein STI-1; structur 98.5 9.4E-07 3.2E-11 68.3 10.8 103 72-178 9-119 (127)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 1.5E-06 5E-11 70.7 12.5 102 350-455 12-113 (164)
160 2kck_A TPR repeat; tetratricop 98.5 1.9E-06 6.4E-11 64.5 12.1 102 348-453 5-109 (112)
161 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.7E-11 66.7 11.9 95 211-307 6-100 (126)
162 3q49_B STIP1 homology and U bo 98.5 2.7E-06 9.4E-11 66.5 13.2 101 348-452 8-108 (137)
163 4b4t_Q 26S proteasome regulato 98.5 2.7E-05 9.4E-10 74.3 22.7 195 147-341 11-243 (434)
164 4gcn_A Protein STI-1; structur 98.5 4.4E-06 1.5E-10 64.5 13.6 60 247-307 11-70 (127)
165 1elw_A TPR1-domain of HOP; HOP 98.5 3.2E-06 1.1E-10 63.8 12.8 94 212-307 7-100 (118)
166 2kck_A TPR repeat; tetratricop 98.5 1.3E-06 4.6E-11 65.3 10.2 99 70-170 5-107 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.4 1.1E-06 3.8E-11 67.9 10.0 110 71-184 4-121 (131)
168 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.6E-10 76.5 19.2 195 217-411 12-243 (434)
169 1elr_A TPR2A-domain of HOP; HO 98.4 6.8E-06 2.3E-10 63.4 13.6 109 352-462 7-119 (131)
170 1hxi_A PEX5, peroxisome target 98.4 2.8E-06 9.6E-11 64.9 11.0 98 352-453 20-117 (121)
171 1hxi_A PEX5, peroxisome target 98.4 1.5E-06 5E-11 66.5 9.2 96 73-170 19-115 (121)
172 2dba_A Smooth muscle cell asso 98.4 3.8E-06 1.3E-10 66.6 11.9 98 70-169 27-128 (148)
173 2xev_A YBGF; tetratricopeptide 98.4 1.2E-05 4.2E-10 61.9 14.5 100 354-458 7-113 (129)
174 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-05 3.6E-10 65.5 14.7 99 208-308 10-108 (164)
175 3q49_B STIP1 homology and U bo 98.4 4.9E-06 1.7E-10 65.0 12.2 100 68-169 6-106 (137)
176 2xev_A YBGF; tetratricopeptide 98.3 6.8E-06 2.3E-10 63.4 11.2 92 76-169 7-105 (129)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-06 3.7E-11 84.6 7.9 159 119-299 246-405 (457)
178 3rkv_A Putative peptidylprolyl 98.3 4E-06 1.4E-10 67.9 10.1 76 384-462 63-139 (162)
179 3ro3_A PINS homolog, G-protein 98.2 1.1E-05 3.7E-10 64.9 11.8 99 351-449 51-157 (164)
180 3ro3_A PINS homolog, G-protein 98.2 1.6E-05 5.5E-10 63.8 12.7 62 246-307 11-77 (164)
181 1dce_A Protein (RAB geranylger 98.2 8E-05 2.7E-09 73.3 19.7 170 295-470 45-241 (567)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 9.7E-06 3.3E-10 78.0 12.9 132 315-470 269-400 (457)
183 3k9i_A BH0479 protein; putativ 98.2 5.1E-06 1.8E-10 63.0 7.9 91 362-455 3-95 (117)
184 1wao_1 Serine/threonine protei 98.2 1E-05 3.6E-10 78.1 11.5 119 323-446 15-135 (477)
185 3rkv_A Putative peptidylprolyl 98.2 2.3E-05 7.9E-10 63.3 11.7 100 71-170 11-127 (162)
186 3k9i_A BH0479 protein; putativ 98.1 3.8E-06 1.3E-10 63.7 6.3 109 396-506 2-115 (117)
187 1wao_1 Serine/threonine protei 98.1 6.6E-06 2.3E-10 79.5 9.3 118 184-303 15-134 (477)
188 1dce_A Protein (RAB geranylger 98.1 7E-05 2.4E-09 73.7 16.0 134 85-221 43-190 (567)
189 1ihg_A Cyclophilin 40; ppiase 98.1 3.1E-05 1.1E-09 71.9 12.5 85 383-470 272-356 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 8.3E-06 2.8E-10 75.0 8.3 145 315-481 180-327 (338)
191 2hr2_A Hypothetical protein; a 98.0 5.7E-05 1.9E-09 59.6 11.3 96 71-168 11-130 (159)
192 1ihg_A Cyclophilin 40; ppiase 98.0 3.2E-05 1.1E-09 71.9 11.8 89 208-298 272-360 (370)
193 1na3_A Designed protein CTPR2; 98.0 8.1E-05 2.8E-09 53.0 10.8 83 384-469 9-91 (91)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.5E-10 73.0 8.1 148 140-307 179-327 (338)
195 2hr2_A Hypothetical protein; a 97.9 0.00017 5.8E-09 56.9 12.3 94 213-307 15-130 (159)
196 2l6j_A TPR repeat-containing p 97.9 3.3E-05 1.1E-09 57.5 7.9 85 383-470 3-93 (111)
197 1zu2_A Mitochondrial import re 97.9 4.1E-05 1.4E-09 60.2 7.8 99 81-183 12-132 (158)
198 2kat_A Uncharacterized protein 97.9 0.00016 5.6E-09 54.2 10.8 81 192-273 2-82 (115)
199 2l6j_A TPR repeat-containing p 97.8 6.5E-06 2.2E-10 61.5 2.7 67 71-139 4-70 (111)
200 1klx_A Cysteine rich protein B 97.8 0.00073 2.5E-08 52.6 14.6 111 329-452 10-128 (138)
201 2kat_A Uncharacterized protein 97.8 0.0001 3.5E-09 55.4 9.2 79 368-450 4-82 (115)
202 3n71_A Histone lysine methyltr 97.7 7.9E-05 2.7E-09 71.5 8.8 97 141-237 352-463 (490)
203 1klx_A Cysteine rich protein B 97.7 0.00092 3.1E-08 52.0 13.1 12 259-270 76-87 (138)
204 1na3_A Designed protein CTPR2; 97.7 0.00019 6.6E-09 50.9 8.1 79 71-151 9-88 (91)
205 3n71_A Histone lysine methyltr 97.6 0.00029 9.9E-09 67.7 11.0 61 245-305 352-419 (490)
206 1zu2_A Mitochondrial import re 97.6 0.00019 6.5E-09 56.4 7.6 89 362-455 15-125 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.00059 2E-08 49.6 8.5 62 349-411 7-68 (100)
208 3ma5_A Tetratricopeptide repea 97.4 0.00049 1.7E-08 50.1 7.8 67 68-136 4-70 (100)
209 3ly7_A Transcriptional activat 97.2 0.0099 3.4E-07 53.8 15.0 74 346-425 274-347 (372)
210 3ly7_A Transcriptional activat 97.2 0.025 8.6E-07 51.2 17.1 72 173-247 275-346 (372)
211 2kc7_A BFR218_protein; tetratr 97.1 0.0046 1.6E-07 44.4 9.6 62 393-457 9-71 (99)
212 3qww_A SET and MYND domain-con 97.0 0.0022 7.7E-08 60.4 8.8 58 109-166 342-408 (433)
213 3bee_A Putative YFRE protein; 97.0 0.0053 1.8E-07 43.6 8.7 65 105-169 4-72 (93)
214 2kc7_A BFR218_protein; tetratr 96.9 0.0026 9.1E-08 45.8 7.1 56 252-308 8-64 (99)
215 3qwp_A SET and MYND domain-con 96.9 0.0061 2.1E-07 57.5 10.7 84 119-202 299-398 (429)
216 2v5f_A Prolyl 4-hydroxylase su 96.8 0.011 3.7E-07 43.1 9.9 79 383-461 4-86 (104)
217 1pc2_A Mitochondria fission pr 96.8 0.02 6.8E-07 44.5 11.3 89 365-457 14-107 (152)
218 3bee_A Putative YFRE protein; 96.8 0.0065 2.2E-07 43.2 8.0 70 68-139 3-75 (93)
219 3u64_A Protein TP_0956; tetrat 96.7 0.047 1.6E-06 47.4 14.1 85 225-311 179-272 (301)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.027 9.3E-07 58.3 15.1 45 186-235 663-707 (814)
221 1wy6_A Hypothetical protein ST 96.6 0.13 4.6E-06 38.4 14.6 65 176-240 92-156 (172)
222 3u64_A Protein TP_0956; tetrat 96.6 0.16 5.3E-06 44.2 16.4 115 125-241 139-272 (301)
223 3qww_A SET and MYND domain-con 96.6 0.0072 2.4E-07 57.0 8.8 62 245-306 341-409 (433)
224 3lvg_A Clathrin heavy chain 1; 96.5 3.2E-06 1.1E-10 77.8 -13.4 265 70-369 53-324 (624)
225 1wy6_A Hypothetical protein ST 96.5 0.16 5.5E-06 38.0 17.3 140 290-453 18-157 (172)
226 3qwp_A SET and MYND domain-con 96.4 0.018 6.3E-07 54.2 10.6 88 254-341 297-398 (429)
227 4ady_A RPN2, 26S proteasome re 96.3 1.2 4.1E-05 45.7 28.7 259 217-481 382-657 (963)
228 1pc2_A Mitochondria fission pr 96.2 0.054 1.9E-06 42.0 10.3 80 226-307 15-99 (152)
229 3mkq_A Coatomer beta'-subunit; 96.2 0.05 1.7E-06 56.3 13.6 153 82-271 610-763 (814)
230 3mkq_B Coatomer subunit alpha; 96.1 0.09 3.1E-06 41.9 11.2 102 115-234 13-114 (177)
231 1nzn_A CGI-135 protein, fissio 96.0 0.14 4.7E-06 38.2 11.1 97 357-457 9-110 (126)
232 4h7y_A Dual specificity protei 95.9 0.077 2.6E-06 40.6 9.6 68 397-467 73-140 (161)
233 2v5f_A Prolyl 4-hydroxylase su 95.9 0.081 2.8E-06 38.3 9.8 64 210-273 6-75 (104)
234 3mkq_B Coatomer subunit alpha; 95.7 0.42 1.4E-05 38.1 13.5 24 280-303 35-58 (177)
235 4h7y_A Dual specificity protei 95.3 0.28 9.6E-06 37.6 10.6 53 328-381 74-126 (161)
236 3lvg_A Clathrin heavy chain 1; 95.3 4.7E-06 1.6E-10 76.6 -18.2 265 106-404 53-324 (624)
237 1qsa_A Protein (soluble lytic 94.9 3.2 0.00011 40.9 25.6 116 293-412 228-347 (618)
238 2ff4_A Probable regulatory pro 94.7 0.58 2E-05 43.4 13.8 73 424-496 174-253 (388)
239 4b4t_P 26S proteasome regulato 94.2 3.7 0.00013 38.7 19.1 93 180-272 142-246 (445)
240 4b4t_P 26S proteasome regulato 93.8 4.5 0.00015 38.1 21.1 188 223-412 30-246 (445)
241 4ady_A RPN2, 26S proteasome re 93.7 7.3 0.00025 40.2 22.4 346 112-470 344-721 (963)
242 1nzn_A CGI-135 protein, fissio 93.5 0.64 2.2E-05 34.6 9.0 84 85-170 15-104 (126)
243 1v54_E Cytochrome C oxidase po 93.3 1.4 4.8E-05 30.9 9.7 64 399-464 25-88 (109)
244 4fhn_B Nucleoporin NUP120; pro 93.1 2.7 9.3E-05 45.2 16.8 53 111-166 816-868 (1139)
245 3o48_A Mitochondria fission 1 92.2 2.8 9.4E-05 31.4 11.0 75 379-455 35-112 (134)
246 3lpz_A GET4 (YOR164C homolog); 91.8 6.8 0.00023 34.9 20.1 111 109-232 37-159 (336)
247 2y69_E Cytochrome C oxidase su 91.0 3.1 0.0001 31.1 9.7 64 399-464 68-131 (152)
248 4fhn_B Nucleoporin NUP120; pro 90.9 14 0.00049 39.7 19.3 171 141-330 813-987 (1139)
249 4gns_B Protein CSD3, chitin bi 90.9 2.9 9.8E-05 42.1 12.9 53 392-447 345-397 (754)
250 4gns_B Protein CSD3, chitin bi 90.9 1.2 4E-05 44.9 10.1 119 361-479 260-397 (754)
251 3ffl_A Anaphase-promoting comp 90.6 1.5 5.1E-05 34.3 8.3 118 317-449 23-150 (167)
252 3o48_A Mitochondria fission 1 89.9 2.4 8.1E-05 31.7 8.5 67 346-412 37-106 (134)
253 2ff4_A Probable regulatory pro 89.5 1.6 5.5E-05 40.4 9.4 70 212-282 174-248 (388)
254 1y8m_A FIS1; mitochondria, unk 88.2 7.1 0.00024 29.6 12.5 73 381-455 36-111 (144)
255 3ffl_A Anaphase-promoting comp 88.0 2.1 7.2E-05 33.5 7.5 27 73-99 65-91 (167)
256 1zbp_A Hypothetical protein VP 86.3 2 6.7E-05 36.8 7.0 58 80-139 6-63 (273)
257 2uwj_G Type III export protein 86.3 6.7 0.00023 27.4 8.3 80 84-170 19-98 (115)
258 2p58_C Putative type III secre 86.1 7 0.00024 27.4 8.6 80 84-170 20-99 (116)
259 4b4t_R RPN7, 26S proteasome re 85.1 11 0.00038 35.2 12.4 97 246-342 133-236 (429)
260 1v54_E Cytochrome C oxidase po 84.2 8.9 0.00031 27.0 10.1 48 226-273 27-74 (109)
261 1qsa_A Protein (soluble lytic 83.4 36 0.0012 33.5 35.3 49 391-444 388-436 (618)
262 3txn_A 26S proteasome regulato 83.1 28 0.00096 31.9 24.7 93 249-341 104-208 (394)
263 4b4t_R RPN7, 26S proteasome re 82.9 11 0.00038 35.2 11.4 98 176-273 132-237 (429)
264 2wpv_A GET4, UPF0363 protein Y 81.3 28 0.00096 30.7 21.9 111 109-232 35-157 (312)
265 1zbp_A Hypothetical protein VP 80.9 7.9 0.00027 33.1 8.5 72 357-429 5-76 (273)
266 1s6c_A KV4 potassium channel-i 80.0 17 0.00058 28.7 10.3 31 68-98 35-66 (183)
267 2y69_E Cytochrome C oxidase su 79.8 17 0.00058 27.2 10.1 60 227-287 71-130 (152)
268 2wpv_A GET4, UPF0363 protein Y 79.8 32 0.0011 30.3 17.7 165 248-448 37-215 (312)
269 2p58_C Putative type III secre 77.2 11 0.00038 26.4 6.6 49 185-238 50-98 (116)
270 3txn_A 26S proteasome regulato 74.8 52 0.0018 30.2 25.1 233 210-448 20-282 (394)
271 1wdy_A 2-5A-dependent ribonucl 73.6 26 0.00087 30.0 10.4 22 292-313 192-213 (285)
272 2uwj_G Type III export protein 72.6 10 0.00036 26.5 5.6 18 221-238 80-97 (115)
273 1n11_A Ankyrin; clathrin, BAND 72.6 27 0.00093 32.4 11.0 39 57-95 28-68 (437)
274 2jul_A Calsenilin; EF-hand, ca 71.0 46 0.0016 28.2 11.2 28 208-235 228-255 (256)
275 1y8m_A FIS1; mitochondria, unk 71.0 32 0.0011 26.1 12.8 67 241-307 36-105 (144)
276 1wdy_A 2-5A-dependent ribonucl 68.6 11 0.00037 32.4 6.8 17 146-162 8-24 (285)
277 3lpz_A GET4 (YOR164C homolog); 67.7 67 0.0023 28.6 22.5 24 349-372 136-159 (336)
278 3esl_A Checkpoint serine/threo 67.4 49 0.0017 26.9 9.7 53 295-347 95-148 (202)
279 1n11_A Ankyrin; clathrin, BAND 65.7 38 0.0013 31.5 10.3 264 77-371 17-297 (437)
280 3eiq_C Programmed cell death p 64.7 78 0.0027 28.5 11.4 24 353-376 221-244 (358)
281 3kea_A K1L; tropism, ANK repea 64.4 69 0.0024 27.5 11.4 10 151-160 39-48 (285)
282 3eu9_A Huntingtin-interacting 63.8 20 0.00068 29.7 7.3 39 56-94 22-62 (240)
283 4b4t_S RPN3, 26S proteasome re 63.7 66 0.0023 30.6 11.0 63 176-238 232-299 (523)
284 2zu6_B Programmed cell death p 62.8 80 0.0027 27.7 11.2 64 388-454 170-235 (307)
285 3eu9_A Huntingtin-interacting 62.3 19 0.00066 29.7 7.0 15 359-373 217-231 (240)
286 4g8k_A 2-5A-dependent ribonucl 62.0 48 0.0016 29.3 9.9 104 265-384 220-329 (337)
287 3eiq_C Programmed cell death p 61.7 92 0.0031 28.0 13.7 91 387-480 220-319 (358)
288 1s1e_A KV channel interacting 61.2 68 0.0023 26.4 11.0 12 210-221 190-201 (224)
289 4b4t_S RPN3, 26S proteasome re 60.8 5.6 0.00019 37.8 3.3 122 106-234 230-366 (523)
290 2d2s_A Exocyst complex compone 58.6 60 0.002 27.2 9.0 90 77-167 24-118 (235)
291 3esl_A Checkpoint serine/threo 58.3 73 0.0025 25.8 9.3 76 397-484 92-168 (202)
292 2ijq_A Hypothetical protein; s 58.1 38 0.0013 26.3 7.0 58 361-418 44-109 (161)
293 2zu6_B Programmed cell death p 56.7 1E+02 0.0035 27.0 11.6 64 248-312 170-235 (307)
294 1k1a_A B-cell lymphoma 3-encod 54.5 60 0.0021 26.7 8.8 29 250-278 12-40 (241)
295 4a1g_A Mitotic checkpoint seri 53.5 54 0.0018 25.2 7.2 27 247-273 104-130 (152)
296 3ltm_A Alpha-REP4; protein eng 53.4 87 0.003 25.2 18.1 93 53-155 18-110 (211)
297 3jxi_A Vanilloid receptor-rela 51.3 17 0.00058 30.8 4.8 25 150-174 12-36 (260)
298 1ug3_A EIF4GI, eukaryotic prot 50.8 99 0.0034 27.6 9.8 281 212-509 14-329 (339)
299 2nsz_A Programmed cell death p 50.4 48 0.0016 24.6 6.4 67 386-455 9-77 (129)
300 3kae_A CDC27, possible protein 50.2 92 0.0031 24.5 13.5 38 416-453 201-240 (242)
301 3bu8_A Telomeric repeat-bindin 50.1 74 0.0025 26.0 7.6 22 115-136 122-143 (235)
302 4gq2_M Nucleoporin NUP120; bet 49.3 1.5E+02 0.0051 31.1 12.1 107 355-469 816-950 (950)
303 2wvi_A Mitotic checkpoint seri 48.9 60 0.002 25.3 6.9 50 228-277 79-129 (164)
304 4g8k_A 2-5A-dependent ribonucl 48.3 1.4E+02 0.0048 26.2 13.3 92 301-403 221-317 (337)
305 2b7e_A PRE-mRNA processing pro 47.8 13 0.00044 23.1 2.3 33 53-85 3-36 (59)
306 2ion_A PDCD4, programmed cell 46.5 49 0.0017 25.5 6.1 108 386-496 11-127 (152)
307 3bqo_A Telomeric repeat-bindin 45.9 65 0.0022 25.9 6.6 47 123-169 94-146 (211)
308 3ltm_A Alpha-REP4; protein eng 45.6 1.2E+02 0.004 24.4 18.3 110 106-224 32-141 (211)
309 3jxi_A Vanilloid receptor-rela 45.2 38 0.0013 28.5 6.1 23 428-450 229-251 (260)
310 2ion_A PDCD4, programmed cell 44.0 80 0.0027 24.2 6.9 23 248-270 13-35 (152)
311 3kea_A K1L; tropism, ANK repea 44.0 67 0.0023 27.6 7.5 153 115-281 67-225 (285)
312 1k1a_A B-cell lymphoma 3-encod 41.1 94 0.0032 25.5 7.9 20 80-99 15-34 (241)
313 3aji_A 26S proteasome non-ATPa 40.7 1.2E+02 0.0039 24.7 8.3 19 251-269 10-28 (231)
314 2nsz_A Programmed cell death p 40.7 1.1E+02 0.0037 22.6 8.9 62 351-413 9-72 (129)
315 3mv2_A Coatomer subunit alpha; 40.6 1.9E+02 0.0065 25.5 11.2 70 399-470 185-258 (325)
316 3hra_A Ankyrin repeat family p 40.1 69 0.0024 25.4 6.6 15 118-132 13-27 (201)
317 4gq2_M Nucleoporin NUP120; bet 39.4 3.6E+02 0.012 28.2 13.6 47 177-223 899-950 (950)
318 2d2s_A Exocyst complex compone 39.3 1.7E+02 0.0058 24.4 10.3 22 286-307 25-46 (235)
319 2etb_A Transient receptor pote 39.1 1E+02 0.0035 25.7 7.9 55 147-202 6-70 (256)
320 2ijq_A Hypothetical protein; s 37.9 1.4E+02 0.0048 23.1 7.5 51 292-342 45-103 (161)
321 2fe3_A Peroxide operon regulat 37.4 1.3E+02 0.0045 22.7 7.4 64 58-123 9-72 (145)
322 2fe3_A Peroxide operon regulat 36.8 1.3E+02 0.0044 22.7 7.2 58 235-293 13-70 (145)
323 3hra_A Ankyrin repeat family p 36.6 61 0.0021 25.7 5.8 51 80-132 11-61 (201)
324 3aji_A 26S proteasome non-ATPa 36.6 1.5E+02 0.0052 23.9 8.4 19 78-96 10-28 (231)
325 2xig_A Ferric uptake regulatio 36.5 1.3E+02 0.0044 22.9 7.1 58 235-293 18-75 (150)
326 2l2e_A Calcium-binding protein 35.9 1.5E+02 0.0053 23.0 9.0 31 51-81 23-55 (190)
327 2xig_A Ferric uptake regulatio 35.7 1.4E+02 0.0047 22.7 7.2 60 269-329 17-76 (150)
328 4aez_C MAD3, mitotic spindle c 34.9 90 0.0031 25.8 6.2 51 227-277 132-183 (223)
329 3b7b_A Euchromatic histone-lys 34.2 79 0.0027 25.9 6.2 20 358-377 216-235 (237)
330 2rfa_A Transient receptor pote 34.1 1.9E+02 0.0064 23.4 8.6 20 325-344 162-181 (232)
331 3t8k_A Uncharacterized protein 34.1 1.7E+02 0.0058 23.0 10.9 65 250-314 41-109 (186)
332 1oyz_A Hypothetical protein YI 33.8 2.2E+02 0.0074 24.1 20.6 229 241-490 34-271 (280)
333 2npm_A 14-3-3 domain containin 32.0 2.4E+02 0.0081 24.0 10.7 59 249-307 33-95 (260)
334 3ubw_A 14-3-3E, 14-3-3 protein 31.8 2.4E+02 0.0081 24.0 10.9 170 278-449 30-227 (261)
335 3ljn_A Hypothetical protein; a 31.7 1.7E+02 0.0059 25.9 8.5 9 361-369 253-261 (364)
336 4ets_A Ferric uptake regulatio 31.5 1.6E+02 0.0055 22.8 7.0 63 60-124 22-86 (162)
337 1mzb_A Ferric uptake regulatio 31.5 1.4E+02 0.0049 22.1 6.6 63 60-124 7-70 (136)
338 2wvi_A Mitotic checkpoint seri 31.2 1.9E+02 0.0064 22.6 8.9 53 402-456 78-131 (164)
339 2etb_A Transient receptor pote 31.1 1.6E+02 0.0056 24.4 7.8 26 251-276 6-31 (256)
340 3eyy_A Putative iron uptake re 30.7 1.2E+02 0.0042 22.9 6.1 58 234-293 9-66 (145)
341 3mkr_B Coatomer subunit alpha; 30.7 2.2E+02 0.0076 25.0 8.2 56 416-471 191-250 (320)
342 2br9_A 14-3-3E, 14-3-3 protein 30.5 2.4E+02 0.0081 23.5 8.7 172 278-449 4-201 (234)
343 1fpw_A Yeast frequenin, calciu 30.3 1.9E+02 0.0066 22.4 10.0 19 211-229 165-183 (190)
344 3eyy_A Putative iron uptake re 30.2 1.2E+02 0.0041 22.9 6.0 63 59-124 7-69 (145)
345 2w57_A Ferric uptake regulatio 30.1 1.4E+02 0.0047 22.7 6.4 64 59-124 5-69 (150)
346 3rjo_A Endoplasmic reticulum a 29.9 3.3E+02 0.011 25.0 15.4 165 75-242 201-373 (419)
347 2qx5_A Nucleoporin NIC96; mRNA 29.6 4.3E+02 0.015 26.2 15.6 345 76-447 157-564 (661)
348 4fke_A Aminopeptidase N; zinc 29.5 5E+02 0.017 27.0 15.8 24 144-167 762-785 (909)
349 2cwy_A Hypothetical protein TT 29.3 1.2E+02 0.0039 21.0 5.1 56 361-418 13-73 (94)
350 2jul_A Calsenilin; EF-hand, ca 28.6 2.6E+02 0.0088 23.3 9.0 165 35-201 73-255 (256)
351 3ltj_A Alpharep-4; protein eng 28.3 2.2E+02 0.0075 22.4 18.3 14 245-258 153-166 (201)
352 3ljn_A Hypothetical protein; a 28.3 1.2E+02 0.0041 27.0 6.8 95 243-347 17-114 (364)
353 2pnn_A Transient receptor pote 28.0 60 0.002 27.6 4.5 18 152-169 22-39 (273)
354 1mzb_A Ferric uptake regulatio 27.7 1.4E+02 0.0047 22.2 5.9 22 295-316 34-55 (136)
355 4fke_A Aminopeptidase N; zinc 27.7 5.3E+02 0.018 26.7 16.9 161 284-451 691-861 (909)
356 3uzd_A 14-3-3 protein gamma; s 27.6 2.8E+02 0.0094 23.4 10.7 170 278-449 3-202 (248)
357 4a1g_A Mitotic checkpoint seri 27.4 2.1E+02 0.0071 21.9 10.7 50 263-312 84-134 (152)
358 3ctd_A Putative ATPase, AAA fa 27.3 2.5E+02 0.0087 22.8 9.2 32 222-253 48-79 (213)
359 2f6m_A Suppressor protein STP2 27.1 1.2E+02 0.0042 19.2 4.9 46 73-120 4-49 (65)
360 1jba_A GCAP-2, protein (guanyl 27.1 2.3E+02 0.008 22.4 8.1 47 89-135 60-106 (204)
361 4ets_A Ferric uptake regulatio 26.9 2.1E+02 0.0073 22.0 7.0 58 271-329 25-84 (162)
362 1s6c_A KV4 potassium channel-i 26.7 2.2E+02 0.0075 21.9 8.2 39 125-163 141-179 (183)
363 1oai_A Nuclear RNA export fact 26.3 57 0.002 20.2 2.8 24 84-107 33-56 (59)
364 1bd8_A P19INK4D CDK4/6 inhibit 26.3 1E+02 0.0034 23.1 5.1 15 220-234 10-24 (156)
365 2rfa_A Transient receptor pote 26.1 2.6E+02 0.0088 22.5 9.7 25 356-380 158-182 (232)
366 4aez_C MAD3, mitotic spindle c 26.1 2.8E+02 0.0095 22.9 7.8 49 88-136 131-179 (223)
367 2r9g_A AAA ATPase, central reg 26.0 2.6E+02 0.0089 22.6 10.1 36 256-292 26-61 (204)
368 3bge_A Predicted ATPase; struc 25.2 2.7E+02 0.0092 22.4 8.0 32 257-288 20-51 (201)
369 2w57_A Ferric uptake regulatio 24.7 1.5E+02 0.0051 22.5 5.7 21 296-316 34-54 (150)
370 2fu4_A Ferric uptake regulatio 24.6 1.5E+02 0.0052 19.4 6.5 62 60-123 6-68 (83)
371 3dd4_A KV channel-interacting 24.4 2.9E+02 0.0098 22.5 9.2 146 51-198 62-225 (229)
372 3bu8_A Telomeric repeat-bindin 23.2 3.1E+02 0.011 22.5 7.8 22 391-412 121-142 (235)
373 2d8n_A Recoverin; structural g 22.2 2.9E+02 0.01 21.8 9.2 63 36-98 16-81 (207)
374 3bge_A Predicted ATPase; struc 22.0 3.1E+02 0.011 22.1 8.9 41 214-254 9-52 (201)
375 3e3v_A Regulatory protein RECX 21.5 3E+02 0.01 21.6 8.2 123 40-166 37-163 (177)
376 3kae_A CDC27, possible protein 21.2 3.1E+02 0.011 21.6 9.1 27 423-449 116-142 (242)
377 4b4t_O 26S proteasome regulato 20.9 4.7E+02 0.016 23.7 11.3 88 215-302 82-192 (393)
378 3pvs_A Replication-associated 20.5 5.2E+02 0.018 24.0 12.6 152 259-412 166-358 (447)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=314.75 Aligned_cols=427 Identities=11% Similarity=0.001 Sum_probs=352.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|..+++++.. ..|+..++..++..|.+.|++++|+.+|+.+... ++++..+..++.+|.+.|++++|.++|++
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 788888888875 4567788888999999999999999999887643 56788888999999999999999999986
Q ss_pred cccCC-----------------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHH-------------
Q 010458 133 LPDKM-----------------RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHM------------- 181 (510)
Q Consensus 133 ~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l------------- 181 (510)
+.... .+..+|+.++.+|.+.|++++|.++|+++.+.+ |+ ...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHH
Confidence 44332 136788999999999999999999999988765 33 2333322
Q ss_pred -------------------------HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 182 -------------------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 182 -------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
+..|.+.|++++|.++|+++.+. +++..+++.++.++.+.|++++|.++|+++.
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455677888888888888765 5688999999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh
Q 010458 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316 (510)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (510)
+.+ +.+..++..++.++.+.|++++|..+++++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 409 (597)
T 2xpi_A 333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPA 409 (597)
T ss_dssp HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHH
Confidence 765 34677888999999999999999999999987643 378889999999999999999999999998753 235678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
|+.++.++.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+... .+..+|..++..|.+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 9999999999999999999999998764 44788899999999999999999999999988653 378899999999999
Q ss_pred cCCHHHHHHHHHHHhhccC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--
Q 010458 397 KGQMEKVLECFKKAIGSVR--KWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-- 470 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 470 (510)
.|++++|.++|+++.+... +..|+ ..+|..++.+|.+.|++++|.++++++.+.++.++.+|..+..+|.+.|+
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999986311 23566 78999999999999999999999999999888889999999999999999
Q ss_pred ChHHHHHHHHhCCCCCCHH-HHHHH
Q 010458 471 MPLIIVERMQKDNVQMDAE-TQKVL 494 (510)
Q Consensus 471 ~a~~~~~~m~~~~~~pd~~-t~~~l 494 (510)
+|...|+++.+. .|+.. .+..+
T Consensus 568 ~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 568 LAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCChHHHHHH
Confidence 899999998874 45543 44433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-38 Score=315.90 Aligned_cols=418 Identities=10% Similarity=-0.007 Sum_probs=364.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.++...|+.++..+.+.|++++|+.+|+++.... |+..++..++.+|...|++++|..+|+.+....+++.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 4678889999999999999999999999998653 5778889999999999999999999999977667899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC---------------CCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC---------------GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853221 2233578999999999999999999999999988755555554
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 213 NLW--------------------------------------LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 213 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 444 44566789999999999998765 58899999999999
Q ss_pred HhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 334 (510)
.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++++... .+.+..++..++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999988655 8889999999999999999999999999865 3446788999999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 010458 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (510)
++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998754 34677999999999999999999999999998754 47889999999999999999999999999973
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-HHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCC
Q 010458 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA------GHVS-TEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 415 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~ 485 (510)
.+.+..+|..++.+|.+.|++++|.++|+++.+. .+.+ ..+|..++.+|.+.|+ +|...++++.+.+ +
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 3457899999999999999999999999999876 2222 6899999999999999 9999999998765 3
Q ss_pred CCHHHHHHHHhhc
Q 010458 486 MDAETQKVLKITS 498 (510)
Q Consensus 486 pd~~t~~~l~~~~ 498 (510)
.+..++..+...+
T Consensus 548 ~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 548 NDANVHTAIALVY 560 (597)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 4677777777655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.5e-31 Score=251.63 Aligned_cols=382 Identities=13% Similarity=0.057 Sum_probs=340.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKK 155 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 155 (510)
+...+.+.|++++|++.++.+.+.. |.++..+..+...+...|++++|...++...+..| +..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999998875 67778888889999999999999999999888766 57899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 156 SAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+++|...|+++.+.. |+ ..+|..+..++.+.|++++|.+.|+++.+..+.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999865 44 457999999999999999999999999988777888899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (510)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|...+++.....+ .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 98764 346788999999999999999999999999998654 678899999999999999999999999988532 246
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.++..+..++...|++++|...|+++.+..+ .+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 7889999999999999999999999997653 356789999999999999999999999999874 34788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
...|++++|.+.++++.+ ..+.+..++..+..++.+.|++++|...|+++.+..|.....|..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999996 3345688999999999999999999999999999998899999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-28 Score=235.37 Aligned_cols=371 Identities=13% Similarity=0.078 Sum_probs=326.2
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.++..|..++..+.+.|++++|+..|++
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889998888764 5567778888889999999999999999998875 77889999999999999999999999999
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChh
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 210 (510)
+....|+ ..+|..+..++...|++++|.+.|+++.+.+ |+ ...+..+...+...|++++|.+.|+++.+..+.+..
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9888775 6789999999999999999999999999875 44 456778888999999999999999999988777899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
+|..+..++...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+..+. +..++..+..++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHH
Confidence 99999999999999999999999998765 346788999999999999999999999999987544 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
..|++++|...++++..... .+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 249 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988532 245789999999999999999999999999764 4577889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 371 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
.++++.+.. +.+..++..+...+.+.|++++|.+.|+++++. .+.+...+..+...+...|+
T Consensus 327 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHhHHHHHHHccC
Confidence 999999864 336788999999999999999999999999963 23356778888777776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.6e-30 Score=250.40 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHccCCCChhh
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL---------PEKAATTLKEMEKRTCRKNRVA 281 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~ 281 (510)
.++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555555555555555555555555555555555555555555554433 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.8e-30 Score=251.47 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCC---------H
Q 010458 157 AEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQND---------K 225 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------~ 225 (510)
..+..+.+.+.+.+..+.+. .++.+|++|++.|++++|.++|++|.+. ..||..+||.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566667788777765554 5888999999999999999999999988 88999999999999987664 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-25 Score=221.43 Aligned_cols=401 Identities=13% Similarity=0.032 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSY 150 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (510)
..|......+.+.|++++|+..|+.+.+.+ |++..+..++.++...|++++|+..++.+.+..|+ ..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 456666777778888888888888887764 46777777888888888888888888877776664 56777788888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-----------------------------------cCcHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-----------------------------------LDKVP 195 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------------------------------~~~a~ 195 (510)
...|++++|...|+.+.+.+. ++......++..+..... .....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888888777652 233333333322222110 01111
Q ss_pred HHHHHHHhC-C---------CCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CCCHHHHHH
Q 010458 196 QMLQELKKN-T---------SPDVVTYNLWLAACAS---QNDKETAEKAFLELKK-----T--KI------DPDWISYST 249 (510)
Q Consensus 196 ~~~~~~~~~-~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~--~~------~~~~~~~~~ 249 (510)
.+...+... . +.+...+......+.. .|++++|...|+++.+ . .. +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111000 0 1124444444444443 6777777777777655 2 10 122455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
+...+...|++++|...|+++.+..+. ...+..+..++...|++++|...++++.... +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 677777777777777777777765433 6666777777777777777777777776642 2244566667777777777
Q ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
+++|...++.+.+..+ .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777765442 2455666677777777777777777777766532 2455666777777777777777777777
Q ss_pred HhhccCCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 410 AIGSVRKWVPD----HRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 410 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
+.+... -.++ ...+..+..++.. .|++++|...++++.+..+.+..++..+...|.+.|+ +|...|++..
T Consensus 398 a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELEN-KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHH-TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhh-ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 765311 1111 3366677777777 7777777777777777666667777777777777777 6777777766
Q ss_pred hC
Q 010458 481 KD 482 (510)
Q Consensus 481 ~~ 482 (510)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.8e-25 Score=215.02 Aligned_cols=314 Identities=10% Similarity=0.024 Sum_probs=180.1
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhc
Q 010458 54 SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133 (510)
Q Consensus 54 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 133 (510)
.+...+.+..... +.+...+..++..+.+.|++++|+.+|+.+.+.. |.++..+..++.++...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444433 5577788889999999999999999999988764 667888889999999999999999999998
Q ss_pred ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-c---chHHHHHHH------------HHhCCCcCcHHH
Q 010458 134 PDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-P---LPYNHMLNL------------YISNGQLDKVPQ 196 (510)
Q Consensus 134 ~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~------------~~~~g~~~~a~~ 196 (510)
.+..|+ ..++..+...|...|++++|.+.|+++.+.+ |+ . ..+..++.. +...|++++|..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887664 7788889999999999999999999988765 43 3 455555333 555555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
.|+++.+..+.+..++..++.++.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++.+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555444455555555555555555555555555554432 234455555555555555555555555555544222
Q ss_pred CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 277 KNRVAYSSL------------LSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 277 ~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+...+..+ ...+...|++++|..+|+++.... |+ ...+..+..++.+.|++++|...++.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222222 344444444444444444444421 11 11333444444444444444444444
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (510)
+.+.. +.+...|..+..+|...|++++|...++++.+
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44322 11333444444444444444444444444444
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.9e-25 Score=215.84 Aligned_cols=368 Identities=10% Similarity=-0.007 Sum_probs=299.2
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
...+...+..+.+.|++++|+..|+++....|++.+|..+..++...|++++|...++++.+.+. .+..+|..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 45677888899999999999999999999889999999999999999999999999999998762 35678999999999
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------------
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK----------------------------- 237 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------------------------- 237 (510)
+.|++++|...|+++....+++......++..+........+.+.+..+..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999988666666655555554443333332222211100
Q ss_pred ------CCC---------CCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----c--cC------CCChhhHHHHH
Q 010458 238 ------TKI---------DPDWISYSTLTSLYIK---MELPEKAATTLKEMEK-----R--TC------RKNRVAYSSLL 286 (510)
Q Consensus 238 ------~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~l~ 286 (510)
... +.+...+......+.. .|++++|...|+++.+ . .+ +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 1124455555555554 8999999999999988 3 11 22456788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (510)
..+...|++++|..+++++...... ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999886543 7788899999999999999999999998764 346778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 367 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+|...++++.+.... +...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999987544 6778999999999999999999999999874 344678899999999999999999999999
Q ss_pred HHhCCCCC------HHHHHHHHHHHHH---cCC--ChHHHHHHHHhC
Q 010458 447 LRNAGHVS------TEIYNSLLRTYAK---AGK--MPLIIVERMQKD 482 (510)
Q Consensus 447 ~~~~~~~~------~~~~~~l~~~~~~---~g~--~a~~~~~~m~~~ 482 (510)
+.+..+.+ ...|..+...+.. .|+ +|...++++.+.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 98876654 3489999999999 898 899999998874
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.7e-24 Score=208.07 Aligned_cols=301 Identities=13% Similarity=0.090 Sum_probs=172.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|.++..+..++..+.+.|++++|+.+|+.+.+..| ++.+|..+..++...|++++|...|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 55666777777777777777777777777766554 466777777777777777777777777776652 2455677777
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCCh---hHHHHHHH------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDV---VTYNLWLA------------ACASQNDKETAEKAFLELKKTKIDPDWISY 247 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 247 (510)
.+|.+.|++++|.+.|+++.+..+.+. .++..++. .+...|++++|...|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 777777777777777777776654444 55554433 3566666666666666665543 2345556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHH------
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCV------ 320 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l------ 320 (510)
..++.+|.+.|++++|...|+++.+..+. +..++..+..+|...|++++|...|+++... .|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 66666666666666666666666655332 4556666666666666666666666666543 2222 222222
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 321 ------ISSLVKLGEFEKAENIYDEWESISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 321 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
...+...|++++|...|+.+.+..+. + ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34444444444444444444432111 1 1233444444444444444444444444332 1133444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 010458 391 TWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+|...|++++|...|++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 444444444444444444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=4.2e-23 Score=205.36 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (510)
..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++..... .+..++..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhc
Confidence 333444444444444444444444432 2234444444444444444444444444444321 1233444444444444
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (510)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+...|++++|...|
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444444444444332 11333444444444444444444444444444321 12334444444444444444444444
Q ss_pred HHHhhccC---CCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--Ch
Q 010458 408 KKAIGSVR---KWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MP 472 (510)
Q Consensus 408 ~~~~~~~~---~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a 472 (510)
+++.+..+ ........+.....++... |++++|...++++.+..+.+..+|..+...|...|+ +|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 44433210 1112222233333344444 444444444444444444444444444444444444 44
Q ss_pred HHHHHHHHh
Q 010458 473 LIIVERMQK 481 (510)
Q Consensus 473 ~~~~~~m~~ 481 (510)
...|++..+
T Consensus 482 ~~~~~~al~ 490 (537)
T 3fp2_A 482 IELFEDSAI 490 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.6e-22 Score=197.22 Aligned_cols=377 Identities=13% Similarity=0.010 Sum_probs=305.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 148 (510)
....|..+...+.+.|++++|+..|+.+.+.. |.++..+..++.++...|++++|++.++++.+..|+ +.++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678899999999999999999999999875 778999999999999999999999999999888774 788999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcch---------------------------------------------------
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLP--------------------------------------------------- 177 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--------------------------------------------------- 177 (510)
++...|++++|...|+.+ ... |+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999999744 322 22111
Q ss_pred ------------------HHHHHHHHHhC--------CCcCcHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCC
Q 010458 178 ------------------YNHMLNLYISN--------GQLDKVPQMLQELKKNTSPDVV-------TYNLWLAACASQND 224 (510)
Q Consensus 178 ------------------~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 224 (510)
...+...+... |++++|..+|+++.+..+.+.. ++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11111111111 3678889999998877555543 56777788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
+++|...++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999876 455888999999999999999999999999988654 788899999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK--- 381 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 381 (510)
+..... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+....
T Consensus 336 a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 988643 256788899999999999999999999999765 346778999999999999999999999998864321
Q ss_pred --CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 382 --PCYTTWELLTWGYLKK----------GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 382 --p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.....+......+... |++++|...|+++.+. .+.+..++..+..++.+.|++++|...|+++.+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1222345556778888 9999999999999973 345678899999999999999999999999999
Q ss_pred CCCCCHHHHH
Q 010458 450 AGHVSTEIYN 459 (510)
Q Consensus 450 ~~~~~~~~~~ 459 (510)
..+.+.....
T Consensus 491 ~~~~~~~~~~ 500 (537)
T 3fp2_A 491 LARTMDEKLQ 500 (537)
T ss_dssp HC--CHHHHH
T ss_pred hCCCcHHHHH
Confidence 9887655543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5.2e-21 Score=179.69 Aligned_cols=317 Identities=11% Similarity=0.005 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+..+.+..++..+..++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 33444444444444444444444443321 12334444444444444444444444444443333444444444444444
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH
Q 010458 223 NDKETAEKAFLELKKTKID--PDWISYST------------LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (510)
|++++|...|+++.+.... .+...+.. +...+...|++++|...++++.+..+. +...+..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 5555555554444433210 12222222 245667777777777777777766443 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH------------HHH
Q 010458 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN------------ILL 356 (510)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 356 (510)
+...|++++|...++++.... +.+...+..+...+...|++++|...++...+..+. +...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776642 224556667777777777777777777777654322 222222 236
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
..+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+. .+.+..++..+..++.
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHH
Confidence 6688899999999999998876432 22 23445778888999999999999999863 3447788889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
..|++++|...|+++.+..|.+...+..+..+...
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999988888888877776554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=4.9e-21 Score=179.83 Aligned_cols=329 Identities=9% Similarity=0.019 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
++..+..+...+...|++++|+..|+.+.+.. |.++..+..+...+...|++++|...++++.+..| +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 35667888889999999999999999998875 67788899999999999999999999999888766 4788888999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCC----CcchHHHH------------HHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLK----CPLPYNHM------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.+...|++++|...|+++.+.. | +...+..+ ...+...|++++|.+.++++.+..+.+..++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 9999999999999999998864 4 33344433 3444455555555555555554444445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (510)
..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+..+. +...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH----
Confidence 555555555555555555555554432 233444555555555555555555555555443221 11111111000
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcCCHHHH
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP----RVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 368 (510)
. .......+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 0000112244566666677777666666654322 22 1233456666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEE 433 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 433 (510)
...+++..+..+ .+...+..+...+...|++++|.+.|+++.+. .|+ ...+..+..+...
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH----NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH
Confidence 777777766532 25566677777777777777777777777742 333 4455555554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1e-20 Score=175.51 Aligned_cols=284 Identities=11% Similarity=-0.017 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+..+..++..+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+..+.+..++..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44444555555555555555555555544331 13334444444445555555555555555444334444444455555
Q ss_pred HhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHH
Q 010458 220 ASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298 (510)
Q Consensus 220 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (510)
...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+..+. +...
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~----------------- 161 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLP----------------- 161 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHH-----------------
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHH-----------------
Confidence 5555 4555555555444332 122334444444444444444444444444443222 2333
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 162 ------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 162 ------------------MLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ------------------HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444444455555555555555544332 223344555555555555555555555555432
Q ss_pred C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 379 G--------IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 379 ~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
. ...+..++..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|...++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 1 0223345666666666666666666666666642 2234556666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHH
Q 010458 451 GHVSTEIYNSLLRTY 465 (510)
Q Consensus 451 ~~~~~~~~~~l~~~~ 465 (510)
.+.++..+..+..++
T Consensus 300 ~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 RRDDTFSVTMLGHCI 314 (330)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 666666666666665
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.8e-19 Score=178.56 Aligned_cols=412 Identities=12% Similarity=0.073 Sum_probs=305.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC
Q 010458 59 MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR 138 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 138 (510)
+++.++.. |-+...|..++. +.+.|++++|..+|+.+.+. .|.+...|...+..+.+.|++++|..+|+++....|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 45555544 558889999998 47889999999999999987 478889999999999999999999999999999888
Q ss_pred ChhhHHHHHHHH-HhCCCHHHHHH----HHHHHHh-CCCCC-CcchHHHHHHHHHh---------CCCcCcHHHHHHHHH
Q 010458 139 GPDTCSALLHSY-VQNKKSAEAEA----LMEKMSE-CGFLK-CPLPYNHMLNLYIS---------NGQLDKVPQMLQELK 202 (510)
Q Consensus 139 ~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~-~~~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 202 (510)
+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|++++|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 888888777533 45677766655 7776654 35444 44577777776654 678999999999998
Q ss_pred hCCCCC--hhHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHH
Q 010458 203 KNTSPD--VVTYNLWLAAC-------------ASQNDKETAEKAFLEL------KKTK---IDPD--------WISYSTL 250 (510)
Q Consensus 203 ~~~~~~--~~~~~~l~~~~-------------~~~~~~~~a~~~~~~m------~~~~---~~~~--------~~~~~~l 250 (510)
+. +.+ ...|....... ...++++.|..++.+. .+.. ++|+ ...|...
T Consensus 158 ~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 VN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred hc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 74 221 23444333211 1345677777777652 2221 2343 2455555
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHccCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHh
Q 010458 251 TSLYIKM----ELP----EKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-------MGYKD-------EVLRIWKKMMSL 308 (510)
Q Consensus 251 ~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 308 (510)
+...... ++. ..+..+|++.....+. +...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 4778899999887544 78889888888875 78887 899999998763
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010458 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386 (510)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 386 (510)
-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.... +...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHH
Confidence 12234677888899999999999999999999975 343 247888898899999999999999999986322 3333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH----HHHHHH
Q 010458 387 WELLTWG-YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST----EIYNSL 461 (510)
Q Consensus 387 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l 461 (510)
|...+.. +...|++++|..+|+++++. .+.+...|..++..+.+.|+.++|..+|++....++.++ ..|...
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3332222 34689999999999999974 334688999999999999999999999999999876443 489999
Q ss_pred HHHHHHcCC--ChHHHHHHHHhC
Q 010458 462 LRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 462 ~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
+......|+ .+..+++++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 999899999 777788887653
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.3e-18 Score=170.68 Aligned_cols=382 Identities=13% Similarity=0.019 Sum_probs=318.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHH----hcChh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRK----LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK----IRGLS 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 124 (510)
..+...++...+.| ++.++..+...|.. .+++++|+..|+...+.+ ++..+..+...|.. .++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 34456666666544 77888888888888 899999999999998764 67788889999988 89999
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCCcCcHHH
Q 010458 125 SAENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQ 196 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 196 (510)
+|.+.|++..+.+ ++..+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.+
T Consensus 97 ~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 97 QAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999988764 67778888888888 899999999999999875 66788888888887 789999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLK 268 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 268 (510)
.|++..+. .+..++..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 173 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 173 WYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998775 467888889999888 899999999999998865 56778888888887 899999999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHH
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL-----GEFEKAENIYDE 339 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~ 339 (510)
+..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...+... +++++|...|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998763 55677788888887 899999999999988754 455677777788777 899999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 010458 340 WESISGTGDPRVPNILLAAYINRN---QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIG 412 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 412 (510)
..+.+ +...+..+...|...| +.++|..+|++..+.| +...+..+...|.. .+++++|.++|+++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98764 4567778888888766 7899999999999874 67888889999988 8999999999999998
Q ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Q 010458 413 SVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAK 467 (510)
Q Consensus 413 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 467 (510)
. + +...+..+...|.+ .+++++|...|++..+.++. ++.....+...+..
T Consensus 396 ~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 Q--G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp T--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred C--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 5 3 67888889999998 89999999999999998854 55555555554443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-19 Score=168.29 Aligned_cols=287 Identities=8% Similarity=-0.028 Sum_probs=223.9
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
.+.++..+...+..+...|++++|.++|+++.+..| +...+..++..+...|++++|...++++.+... .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 467788899999999999999999999999988776 467788888999999999999999999998652 367789999
Q ss_pred HHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 182 LNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 182 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
...+...| ++++|.+.|++..+..+.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999999998877788999999999999999999999999988764 33456677799999999999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCCHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA--------KMNDAEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 332 (510)
++|...+++..+..+. +...+..+...+...|++++|...++++..... +.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987544 678888999999999999999999998877421 1223456666666666666666
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
|...+++..+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 666666666543 22455556666666666666666666666555432 1444555555544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.8e-20 Score=173.92 Aligned_cols=283 Identities=14% Similarity=0.071 Sum_probs=191.5
Q ss_pred CCCcCcHHH-HHHHHHhCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010458 188 NGQLDKVPQ-MLQELKKNTS--P--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 188 ~g~~~~a~~-~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 262 (510)
.|++++|.+ .|++.....+ | +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554443311 1 23455566666666666666666666666553 3355566666666666677777
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH-H--------------HHHHHHhc
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT-C--------------VISSLVKL 327 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~ 327 (510)
|...|+++.+..+. +..++..+...+...|++++|...++++....... ...+. . .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77666666665433 55666666666666677777777776666543221 11111 1 23333478
Q ss_pred CCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010458 328 GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
|++++|...++++.+..+.. +..++..+...|...|++++|...++++.+..+ .+...+..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999999999888754332 467788888899999999999999999887643 3577888889999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------HHHHHHHHHHHHHcCC--ChH
Q 010458 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-----------TEIYNSLLRTYAKAGK--MPL 473 (510)
Q Consensus 407 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~--~a~ 473 (510)
|+++++. .+.+..++..+..+|.+.|++++|...|+++.+..+.+ ..+|..+..+|...|+ +|.
T Consensus 274 ~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9998863 24457788889999999999999999999888766554 7889999999999998 565
Q ss_pred HHHH
Q 010458 474 IIVE 477 (510)
Q Consensus 474 ~~~~ 477 (510)
.++.
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 5544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.1e-20 Score=174.39 Aligned_cols=267 Identities=15% Similarity=0.072 Sum_probs=173.0
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
.+..+...+.+.|++++|...|+++.+..+.+..++..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344444444555555555555555444444444555555555555555555555555554432 2244455555555555
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSS---------------LLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCV 320 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 320 (510)
.|++++|...++++.+..+. +...+.. .+..+...|++++|...++++....... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555544322 1111110 1223337788888888888887753321 35677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010458 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400 (510)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (510)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+ .+...+..+...|.+.|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCH
Confidence 888888888888888888887654 33567788888889999999999999998887643 3677888888999999999
Q ss_pred HHHHHHHHHHhhccCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 401 EKVLECFKKAIGSVRKW--------VPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 401 ~~a~~~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
++|...|+++.+..+.. +....+|..+..++...|++++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999888641111 011678899999999999999999887643
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.9e-17 Score=160.97 Aligned_cols=364 Identities=14% Similarity=0.058 Sum_probs=307.6
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHH----hcChhhHHHHHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISK----IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEA 161 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 161 (510)
++..+....+.+ ++..+..+...+.. .+++++|...|++..+. .++..+..|...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 455555555443 77888888888888 89999999999998776 367788889999998 999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHH
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFL 233 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 233 (510)
.|++..+.| ++..+..|...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|.+.|+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999875 66778888888888 78999999999998765 356778888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010458 234 ELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKM 305 (510)
Q Consensus 234 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 305 (510)
+..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 67788889999988 899999999999998864 56778888888886 88999999999998
Q ss_pred HHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 010458 306 MSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-----NQLEMAESFYNRLV 376 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 376 (510)
.+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+...|... ++.++|...|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 45567777777777 899999999999998754 456777888888887 89999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 010458 377 TKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRN 449 (510)
Q Consensus 377 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 449 (510)
+.| +...+..+...|...| ++++|+++|+++.+. .+...+..+...|.. .+++++|..+|++..+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 875 5577788888887766 789999999999974 468889999999998 8999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHH----cCC--ChHHHHHHHHhCCCC
Q 010458 450 AGHVSTEIYNSLLRTYAK----AGK--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~----~g~--~a~~~~~~m~~~~~~ 485 (510)
.+ ++..+..|...|.. .++ +|...|++..+.+..
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 76 67889999999998 677 899999999887643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2e-17 Score=163.79 Aligned_cols=391 Identities=11% Similarity=0.022 Sum_probs=286.7
Q ss_pred HHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010458 94 CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172 (510)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 172 (510)
|+...+.+ |.+...|..++.. .+.|++++|..+|+++.+..| +...|..++..+.+.|++++|..+|++..+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 6788899988884 788999999999999999877 47889999999999999999999999999865
Q ss_pred CCcchHHHHHHHH-HhCCCcCcHHH----HHHHHHhC---CCCChhHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010458 173 KCPLPYNHMLNLY-ISNGQLDKVPQ----MLQELKKN---TSPDVVTYNLWLAACAS---------QNDKETAEKAFLEL 235 (510)
Q Consensus 173 p~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m 235 (510)
|+...|..++... ...|+.++|.+ +|+..... .+++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888777533 45788888776 77766554 23467788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHHH------cc---CCCC--------hhhHHHH
Q 010458 236 KKTKIDPDWISYSTLTSLY-------------IKMELPEKAATTLKEMEK------RT---CRKN--------RVAYSSL 285 (510)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~~------~~---~~~~--------~~~~~~l 285 (510)
.+....+....|....... .+.+++..|..++.++.. .. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123444332211 124567777777776332 11 2333 2345554
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 010458 286 LSLYTNM----GYK----DEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-------LGEFE-------KAENIYDEWESI 343 (510)
Q Consensus 286 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 343 (510)
+...... ++. +++..+|+++.... +.+...|..++..+.. .|+++ +|..+|+...+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433222 232 47888999998863 2356778777777765 69987 899999999863
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-C
Q 010458 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-Y-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-D 420 (510)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~ 420 (510)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|+++.+. .| +
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~----~~~~ 389 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED----ARTR 389 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTCC
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----cCCc
Confidence 22346778899999999999999999999999986 343 2 57888899889999999999999999964 33 3
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC-CCCC--HHHHHHH
Q 010458 421 HRLITAAYNK-LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN-VQMD--AETQKVL 494 (510)
Q Consensus 421 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~-~~pd--~~t~~~l 494 (510)
...+...+.. +...|+.++|..+|++..+..|.++..|..++..+.+.|+ .|..+|++..+.+ ..|+ ...|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344333322 3468999999999999999888899999999999999999 8999999998763 3443 2345444
Q ss_pred Hh
Q 010458 495 KI 496 (510)
Q Consensus 495 ~~ 496 (510)
+.
T Consensus 470 ~~ 471 (530)
T 2ooe_A 470 LA 471 (530)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.6e-18 Score=167.86 Aligned_cols=389 Identities=13% Similarity=0.006 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc----c---CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC----
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQ----Y---DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---- 136 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 136 (510)
+.....||.+...+...|++++|++.|++..+. . ..+....+|..+..+|...|++++|...++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999987653 1 11334457888999999999999999999876543
Q ss_pred -C---C-ChhhHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHH---HHhCCCcCcHHHHHHHHHhCC
Q 010458 137 -M---R-GPDTCSALLHSYVQ--NKKSAEAEALMEKMSECGFLKC-PLPYNHMLNL---YISNGQLDKVPQMLQELKKNT 205 (510)
Q Consensus 137 -~---~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 205 (510)
+ + .+.++.....++.. .+++++|+..|++..+.. |+ +..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1 24566666655554 457999999999998865 44 4445555444 345688899999999988877
Q ss_pred CCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhh
Q 010458 206 SPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 281 (510)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 7788888777666554 467889999999987664 456778889999999999999999999999987554 6667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (510)
+..+..+|...+.... .. . ...........+..+.|...++...+.. +.+...+..+...|..
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~--~-----~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NL--R-----ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---------hH--H-----HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 7777766643211110 00 0 0000011112234567788888777654 3356677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYT--TWELLTW-GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 438 (510)
.|++++|...|++..+....|... .+..+.. .....|++++|+..|+++++. .|+..... +...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i----~~~~~~~~---------~~~~ 413 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI----NQKSREKE---------KMKD 413 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS----CCCCHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CcccHHHH---------HHHH
Confidence 888888888888888764332221 1222222 234678888888888888853 45543222 2234
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC-CCCCHHH
Q 010458 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN-VQMDAET 490 (510)
Q Consensus 439 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~-~~pd~~t 490 (510)
.+.+++++..+.+|.++.+|+.+...|...|+ +|++.|++..+.+ ..|+..+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 45666777777777778888888888888887 8888888877643 3455443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.6e-19 Score=170.12 Aligned_cols=257 Identities=16% Similarity=0.042 Sum_probs=181.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44556777777777777777777777776653 345667777777777777777777777777776433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CCcchHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLFAKM---------NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLA 357 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 357 (510)
+|...|++++|...++++....... ....+..+...+...|++++|...++++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777777776642110 0112233466777888888888888888875433 15667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCH
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 437 (510)
.|...|++++|...|+++.+..+ .+..+|..+...|...|++++|+..|+++++. .+.+..++..+..+|.+.|++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCH
Confidence 88888888888888888887643 36778888888888888888888888888863 233477888888888888888
Q ss_pred HHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHcCC
Q 010458 438 DGAEHLLVTLRNAGHV------------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 470 (510)
++|...|+++.+..+. +..+|..+..++...|+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 8888888888765543 25678888888888887
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=4.7e-19 Score=166.92 Aligned_cols=268 Identities=13% Similarity=0.049 Sum_probs=189.8
Q ss_pred cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
...|..+...+.+.|++++|...|+++.+..+.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34466666666666666666666666666555566667777777777777777777777766543 33466677777777
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKRTCRKNR----------VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISS 323 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 323 (510)
...|++++|...|+++.+..+. +. ..+..+...+...|++++|..+++++....... +..++..+...
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7777777777777777665322 12 223345778888888999999999888764321 46778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..+. +..++..+...|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999888754 336778889999999999999999999998886432 577888999999999999999
Q ss_pred HHHHHHHhhccCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 404 LECFKKAIGSVRKWVP---------DHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
...|+++++..+.... +..+|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998864211111 257889999999999999988877654
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.2e-17 Score=160.06 Aligned_cols=329 Identities=10% Similarity=-0.026 Sum_probs=216.5
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccC---------CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC---
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---------MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG--- 170 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 170 (510)
+.....|+.+..++...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999988876442 22 24678888889999999999998888765421
Q ss_pred ---CCC-CcchHHHHHHHHHhC--CCcCcHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCC
Q 010458 171 ---FLK-CPLPYNHMLNLYISN--GQLDKVPQMLQELKKNTSPDVVTYNLWLAAC---ASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 171 ---~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
..+ ...++..+..++... +++++|++.|++..+..+.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 011 223455555555443 4678888888888777666666666665553 34566777888888776653 3
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH
Q 010458 242 PDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (510)
.+...+..+...+.. .|++++|.+.+++.....+. +...+..+...|...|++++|...++++.+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 345556555555444 45677888888888776544 6677888888888888888888888888775322 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..+..+|...+... .... . ..........+..+.|...+++..+.++. +...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 55554443211110 0000 0 00111112233468899999998886533 556788899999999
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHR----LITAAYN-KLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
|++++|++.|+++++. .|+.. .+..+.. .....|++++|+..|++..+..+.+..
T Consensus 348 ~~~~~A~~~~~kaL~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp TCHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred ccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999975 33332 2333333 245789999999999999999887643
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=9.1e-20 Score=168.41 Aligned_cols=284 Identities=9% Similarity=0.074 Sum_probs=104.7
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
+.|+.++|.++++++. .+.+|..++.++.+.|++++|++.|.+. +|+..|..++..+...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4466777777777762 2347777777777777777777777553 3566777777777777777777776
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010458 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242 (510)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 242 (510)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 6655553 3456667777777777777777665553 356667777777777777777777777765
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 25777777777777777777777776 1667777777777777777777544433 1123333445667
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKP------CYTTWELLTWGYL 395 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~~~~ 395 (510)
.|.+.|.+++|..+++...... .-....|+.+..+|++- ++++..+.++.... .+++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766433 23344566666666543 23333333322222 22222 2345666677777
Q ss_pred hcCCHHHHHHHH
Q 010458 396 KKGQMEKVLECF 407 (510)
Q Consensus 396 ~~~~~~~a~~~~ 407 (510)
+.++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 777777666543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=7.8e-19 Score=162.23 Aligned_cols=370 Identities=10% Similarity=0.060 Sum_probs=169.8
Q ss_pred hcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHH
Q 010458 48 LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127 (510)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 127 (510)
.+.+-++|.+.++++ +++..|..++.++.+.|++++|++.|.+. +++..|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 333347888888886 23458999999999999999999999652 46779999999999999999999
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
.+++...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 9999888776778889999999999999999998885 278889999999999999999999999977
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence 47999999999999999999999988 268999999999999999999966555432 24444557899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCC------CcchHHHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL--GEFEKAENIYDEWESISGTG------DPRVPNILLAAY 359 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 359 (510)
.|.+.|++++|..+++...... +.....|+-+.-++++- ++..+..+.|..- .+++| +...|..+...|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 33456677776666653 3444444444321 22222 567899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 360 INRNQLEMAESFYNRLVTKG-----------IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...++++.|....-+-.... ...+...|-..+..|.. ..+ .++.-+...+.. .+ |. +.++
T Consensus 293 ~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p-~~l~~ll~~l~~--~l--d~---~r~v 363 (449)
T 1b89_A 293 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKP-LLLNDLLMVLSP--RL--DH---TRAV 363 (449)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCG-GGHHHHHHHHGG--GC--CH---HHHH
T ss_pred HhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCH-HHHHHHHHHHHh--cc--Cc---HHHH
Confidence 99999998877432211110 01133344444444441 111 112222222211 11 11 3344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
..+.+.|+..-+...+..+...+ +..+-.++-..|...++
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n--~~~vnealn~l~ieeed 403 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhh
Confidence 55667777777777776666543 33344444444555544
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.3e-18 Score=159.37 Aligned_cols=278 Identities=12% Similarity=-0.042 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...+..+...+...|++++|+.+|+.+.+.. |.++..+..++..+...|++++|...++++.+..| +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34456677777888888888888888887764 56777788888888888888888888888777665 4677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHH-HH-HHHhcCCHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW-LA-ACASQNDKE 226 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 226 (510)
.+...|++++|.+.++++.+.... +...+..+.... |+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD---------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH---------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888888775422 222333221000 000111111 11 244455556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666655554442 224455555555666666666666666665554322 44555556666666666666666666655
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-----------DPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
+.. +.+...+..+..++...|++++|...++++.+..+.. +...+..+..++...|+.++|..++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 542 1234455555556666666666666666655433221 244555666666666666666666554
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=6.9e-18 Score=156.15 Aligned_cols=261 Identities=11% Similarity=-0.030 Sum_probs=156.8
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 257 (510)
+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444444433344444455555555555555555555544432 22344455555555555
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSL--------------LS-LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
|++++|.+.++++.+..+. +...+..+ .. .+...|++++|..+++++..... .+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 5555555555555544222 22222222 22 35566777777777777766532 24566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 7777777777777777777543 23456677777778888888888888887776542 256677777888888888888
Q ss_pred HHHHHHHHhhccCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPD-------------HRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
|.+.++++.+. .|+ ..++..+..++.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYM----QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHH----HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHh----CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888887754 233 567777888888888888888777643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.1e-17 Score=148.45 Aligned_cols=246 Identities=11% Similarity=0.091 Sum_probs=117.3
Q ss_pred HHHhcChhhHHHHHHhcccCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 117 ISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
....|+++.|+..++......|+. .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 345566666666666555544432 2334455666666666666654432 1223444555555555555555555
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 195 PQMLQELKKNT--SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 195 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
++.++++.... +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554431 22444455555555555555555555543 23444555555555555555555555555555
Q ss_pred ccCCCChhhHHH----HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 273 RTCRKNRVAYSS----LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 273 ~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
.. |+.. ... ++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...|+++.+.. +.+
T Consensus 159 ~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 159 QD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 42 2211 111 112222234455555555554443 22233444444444445555555555555444332 123
Q ss_pred cchHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 010458 349 PRVPNILLAAYINRNQLEM-AESFYNRLVT 377 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 377 (510)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444444444444444433 3344444444
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=9.3e-17 Score=145.29 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=146.5
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
+-....|+++.|+..++......+.+ ......+.++|...|+++.|...++. . -+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 33445666666666666543331111 22344456666666666666654432 1 2445556666666666666666
Q ss_pred HHHHHHHHHHHccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 344455555666666666666666665 234455666666666666666666666666
Q ss_pred HhccCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 010458 341 ESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417 (510)
Q Consensus 341 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 417 (510)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++++. .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~ 230 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D 230 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 6543 332111 112222333466666666666666653 235556666666666666666666666666642 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCCCCCHHH
Q 010458 418 VPDHRLITAAYNKLEEQGDIDG-AEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 418 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 457 (510)
+-+..++..++..+...|+.++ +.++++++.+.+|.++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 3345566666666666666654 456666666666655443
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=8.4e-15 Score=150.94 Aligned_cols=353 Identities=12% Similarity=0.101 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.++.-....+++|...|.+.+|+++++++...+. +..+...-+.++....+. +.....++.++.... + ...+.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eIA 1056 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDIA 1056 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHHH
Confidence 3555567778888888999999999988874421 112223333344444444 344444444444321 1 33467
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
..+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHHH
Confidence 778889999999999988531 1122233322 6788889988888662 57888899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999653 466788889999999999999999998877764 34334445889999998888644442 1
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387 (510)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 387 (510)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 345566777889999999999999999875 378899999999999999999998762 66889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
..+..+|...|++..|..+.... ..++..+..++..|.+.|.+++|..+++.....++.....|+-|...|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 99999999999999888877643 23667777899999999999999999999988876677889888888888
Q ss_pred cCC----ChHHHHH
Q 010458 468 AGK----MPLIIVE 477 (510)
Q Consensus 468 ~g~----~a~~~~~ 477 (510)
... ++.++|.
T Consensus 1327 y~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW 1340 (1630)
T ss_pred CCHHHHHHHHHHHH
Confidence 766 4444444
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1e-14 Score=150.34 Aligned_cols=306 Identities=16% Similarity=0.134 Sum_probs=147.3
Q ss_pred hcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
.+++++|.++.++.. ++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|.
T Consensus 1089 i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444331 2444455555555555555555554331 234444445555555555555555554
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh
Q 010458 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (510)
...+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1159 mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1159 MARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred HHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 443332 11111222444444544444322221 1 223334444555555555555555555543
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (510)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY 1290 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHH
Confidence 24455555555555555555555443 13344555555555555555554443321 22334455666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhccCCCCC------CHHHHHHHHHHH
Q 010458 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYNKL 431 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~ 431 (510)
.+.|.+++|+.+++..+... +-....|.-+...|++- ++..++.++|..-. +++| +...|..+.-.|
T Consensus 1291 e~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri----ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----ccchHhHHHHHHHHHHHHHHHH
Confidence 77777777777776665543 22334454555555442 23334444444332 2222 345677777777
Q ss_pred HHcCCHHHHHHHH-------------HHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 432 EEQGDIDGAEHLL-------------VTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 432 ~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
.+.|+++.|.... ++.. ..+.+++.|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i-~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDII-TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHh-cccccHHHHHHHHHHHHhhC
Confidence 7777777776222 1111 12336677777777776655
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.1e-16 Score=139.61 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC--C----hhhH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--N----RVAY 282 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 282 (510)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777766655 556667777777777777777777777766653221 1 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
..+...+...|++++|...++++.... |+ ...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 777777777777777777777776642 33 134555667777777777776543 22445566677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
|++++|...++++.+.... +...+..+...+...|++++|...++++++. .+.+...+..+..++.+.|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777765432 5667777777777777777777777777753 23346677777777777777777777
Q ss_pred HHHHHHhCC------CCCHHHHHHHH
Q 010458 443 LLVTLRNAG------HVSTEIYNSLL 462 (510)
Q Consensus 443 ~~~~~~~~~------~~~~~~~~~l~ 462 (510)
.++++.+.. |.+..++..+.
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHH
Confidence 777776665 44444444443
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.7e-16 Score=150.04 Aligned_cols=346 Identities=15% Similarity=0.082 Sum_probs=241.5
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh---hhHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCSALLHSYVQ 152 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (510)
.+...+.+.|++++|++.|+...+.+ ++..+..+..++...|+. ++|...|++..+. ++..+..+...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 36677888999999999999998765 456666777777778888 8999999999876 77778888876665
Q ss_pred CC-----CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc---HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 153 NK-----KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 153 ~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
.+ ++++|...|++..+.| +...+..|...|...+..++ +.+.+...... .+......+...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 55 7899999999999876 44478888888887766544 44444444332 245667778888888875
Q ss_pred HH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc----C
Q 010458 225 KE----TAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM----G 293 (510)
Q Consensus 225 ~~----~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 293 (510)
++ .+..+++..... .|+ .+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 54 444445444332 233 7888999999999 999999999999998754 666667788888665 7
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----CH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISS-L--VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN-----QL 365 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 365 (510)
++++|..+|++.. .| +...+..+... + ...+++++|...|++..+.+ +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999986 32 45566666665 3 46899999999999998765 6677788888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCH
Q 010458 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDI 437 (510)
Q Consensus 366 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 437 (510)
++|..+|++.. .| +...+..+...|.. ..++++|..+|+++.+. + +......+...|.. ..+.
T Consensus 304 ~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 304 KAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--G---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp HHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--T---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred HHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--C---hHHHHHHHHHHHHhCCCCCCCH
Confidence 99999999988 43 66777778777766 44999999999999875 4 34455666666664 4589
Q ss_pred HHHHHHHHHHHhCCCCC
Q 010458 438 DGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~~ 454 (510)
++|..+|+...+.|.+.
T Consensus 375 ~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 99999999999988653
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=9.2e-18 Score=167.38 Aligned_cols=163 Identities=8% Similarity=0.047 Sum_probs=123.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (510)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999987753 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------cchHHHHHH
Q 010458 285 LLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD------PRVPNILLA 357 (510)
Q Consensus 285 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 357 (510)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++..+++ ..+..|+ +.+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 477889999999999999999999888655443 233333333 2233333 445556666
Q ss_pred HHHhcC---------CHHHHHHHHHHH
Q 010458 358 AYINRN---------QLEMAESFYNRL 375 (510)
Q Consensus 358 ~~~~~g---------~~~~A~~~~~~~ 375 (510)
.|.+.+ ..++-...|++-
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHHH
Confidence 666544 235555566543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-15 Score=135.44 Aligned_cols=240 Identities=10% Similarity=-0.007 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--C----hhhH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--N----DAEY 317 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 317 (510)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++....... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999987 688999999999999999999999999998754321 2 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..+..++...|++++|...|+++.+.. |+ ...+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 889999999999999999999998753 33 34567788999999999999986432 556788899999999
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLII 475 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~ 475 (510)
|++++|...++++.+. .+.+..++..+..++...|++++|...++++.+..+.++..|..+...+...|+ +|...
T Consensus 153 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999974 345688999999999999999999999999999998899999999999999999 89999
Q ss_pred HHHHHhCC----CCCCHHHHHHHHhhc
Q 010458 476 VERMQKDN----VQMDAETQKVLKITS 498 (510)
Q Consensus 476 ~~~m~~~~----~~pd~~t~~~l~~~~ 498 (510)
+++..+.. ..|+.......+..|
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 98887643 226665555555433
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=167.35 Aligned_cols=166 Identities=10% Similarity=0.031 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEK---RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (510)
..-..||++||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|...|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 010458 318 TCVISSLVKLGE-FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC------YTTWELL 390 (510)
Q Consensus 318 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 390 (510)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 478999999999999999999999998765543 344444444 3344444 4455566
Q ss_pred HHHHHhcC---------CHHHHHHHHHHHh
Q 010458 391 TWGYLKKG---------QMEKVLECFKKAI 411 (510)
Q Consensus 391 ~~~~~~~~---------~~~~a~~~~~~~~ 411 (510)
...|.+.+ ..++-.+.|++=+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 66676655 2345555555443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=4.2e-16 Score=134.74 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=99.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|+++..+..+...+...|++++|...|+++.+..| ++..+..+...+.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34445555555555555555555555555555544 245555555555555555555555555555431 1333445555
Q ss_pred HHHHhC-----------CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 183 NLYISN-----------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251 (510)
Q Consensus 183 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 251 (510)
.++... |++++|+..|++..+..+.+..++..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555544 555555555555555444455555555556666666666666666655544 4455555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
.++...|++++|+..|++..+..+. +...+..+...+...|++++|+..+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665555333 4455555555555666666665555543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=4.5e-15 Score=133.30 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLH 148 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~ 148 (510)
.+......+...|++++|+..|+.+.+.. |.++..+..+...+...|++++|+..++++.+..+++ .+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34445555566666666666666665543 4445555566666666666666666666555532222 22555555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
.+...|++++|...|++..+... .+..+|..+...+...|++++|.+.|++..+..+.+..++..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555431 13445555555555555555555555555554444455555555222233355555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcc-CCCC------hhhHHHHHHHHHhcCCHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMEL---PEKAATTLKEMEKRT-CRKN------RVAYSSLLSLYTNMGYKDEV 298 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~a 298 (510)
.+.|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555554432 2224444445555555554 444555555544331 0111 12444445555555555555
Q ss_pred HHHHHHHHH
Q 010458 299 LRIWKKMMS 307 (510)
Q Consensus 299 ~~~~~~~~~ 307 (510)
...++++.+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=4.5e-15 Score=133.32 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=156.0
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcch----HHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNH 180 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~ 180 (510)
++..+......+...|++++|+..|+++.+..|+ ...+..+...+...|++++|+..+++..+.+ ++... |..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 3455666677777888888888888887777664 5577777788888888888888888877743 23332 677
Q ss_pred HHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 181 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
+...+...|++++|.+.|++..+..+.+..++..+..++...|++++|...|++..+.. +.+...+..+...+...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 77777888888888888887777666677777777788888888888888887776652 34556666666334444577
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhc-CCCCh------hhHHHHHHHHHhcCCH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIWKKMMSLF-AKMND------AEYTCVISSLVKLGEF 330 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~------~~~~~l~~~~~~~~~~ 330 (510)
++|.+.|+++.+..+. +...+..+..++...++ +++|...++++.+.. ..|+. ..|..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 7777777777776433 45666666667666666 666777777665542 11221 3455555555666666
Q ss_pred HHHHHHHHHHHhc
Q 010458 331 EKAENIYDEWESI 343 (510)
Q Consensus 331 ~~a~~~~~~~~~~ 343 (510)
++|.+.++++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666543
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=6.9e-15 Score=137.51 Aligned_cols=251 Identities=12% Similarity=0.064 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHccCCCChhhHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL-PEKAATTLKEMEKRTCRKNRVAYSSLL 286 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 286 (510)
+..+|+.+..++...|++++|+..++++.+.. +-+...|+.+..++...|+ +++|+..|+++.+..+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 44567777777777778888888887776653 3356677777777777775 88888888888777555 667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh-cCCH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQL 365 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 365 (510)
.++...|++++|+..|+++...... +...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887775322 4566777777777888888888888887765533 56677777777777 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC---
Q 010458 366 EMA-----ESFYNRLVTKGIKPCYTTWELLTWGYLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG--- 435 (510)
Q Consensus 366 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 435 (510)
++| +..|++.++..+. +...|..+...+...| ++++|++.+.++ + ..+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhccc
Confidence 666 4778888776433 5667888888888877 578888888887 3 44556778888888888764
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHH
Q 010458 436 ------DIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 436 ------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 467 (510)
.+++|.++++++ .+.+|.....|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999998 78887778888888777665
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.9e-15 Score=130.51 Aligned_cols=197 Identities=18% Similarity=0.124 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33344444444444444444444444444332 223344444444444444444444444444443322 3334444444
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 288 LYTNM-----------GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 288 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
++... |++++|+..+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 5555555555555443211 23344445555555555555555555555443 3444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
.+|...|++++|...|++..+..+. +...+..+...+...|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555554322 3444555555555555555555555544
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=6.9e-13 Score=132.26 Aligned_cols=437 Identities=7% Similarity=0.028 Sum_probs=308.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC---hhhHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENF 129 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 129 (510)
.+....+++-+..+ +-|...|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|. ++.+.++
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 66677777777776 679999999999999999999999999999987 58888899999999888898 9999999
Q ss_pred HHhcccCC---CChhhHHHHHHHHHhCCCH--------HHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh--------
Q 010458 130 FENLPDKM---RGPDTCSALLHSYVQNKKS--------AEAEALMEKMSE-CGF-LKC-PLPYNHMLNLYIS-------- 187 (510)
Q Consensus 130 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~~-------- 187 (510)
|++..... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99999887 7888898888766655543 344577877554 455 454 3577777765442
Q ss_pred -CCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----
Q 010458 188 -NGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACAS-------------QNDKETAEKAFLELKK--TKI----D----- 241 (510)
Q Consensus 188 -~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~--~~~----~----- 241 (510)
.++.+.+..+|++.......+ ..+|......... ..+++.|...+.++.. .++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 234677888998887531112 2344322222111 1233445555554321 111 1
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH-
Q 010458 242 ------P-----D---WISYSTLTSLYIKME-------LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL- 299 (510)
Q Consensus 242 ------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 299 (510)
| + ...|...+..--..+ ..+.+..+|++.....+. +...|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134555554333222 123456788888877443 7888988888888999999997
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC---------CCC------------cchHHHHHHH
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG---------TGD------------PRVPNILLAA 358 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~ 358 (510)
.+|+..... .+.+...+...+....+.|+++.|.++|+.+.+... .|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 333555567778888899999999999999886310 132 2357777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 437 (510)
..+.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|.++|+.+++ .++-+...+...+......|+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk---~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK---YFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHhCCCH
Confidence 888999999999999998761122334444333333344 458999999999997 3445677778888888899999
Q ss_pred HHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 438 DGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
+.|+.+|++.....++ ....|...+.--.+.|+ .+..+.+++.+.- |+......+..-+.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 9999999999988773 46789999999999999 7888999998753 55455555555443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.7e-14 Score=125.69 Aligned_cols=210 Identities=12% Similarity=-0.021 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++..... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 345566666677777777777777777665433 556667777777777777777777777766532 244566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776521222 345566777777788888888888887776543 256677778888888888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
|...++++.+ ..+.+...+..+...+...|++++|.+.++++.+..+.++....
T Consensus 194 A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888775 33455667777777888888888888888888877776655443
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=1.3e-13 Score=123.77 Aligned_cols=226 Identities=15% Similarity=0.027 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5556666777777777777777777776663 244566667777777 777777777777776653 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 284 SLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 284 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776653 45566666666666 777777777777776643 44556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 356 LAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 356 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.+|+++.+. + +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E---NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--C---CHHHHHHH
Confidence 666666 677777777777777653 45666667777777 77777777777777753 2 25566666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCC
Q 010458 428 YNKLEE----QGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 428 ~~~~~~----~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|.+ .+++++|.+.|++..+.++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 677776 77777777777777766654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=7e-14 Score=121.39 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...+..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|..+++++.... +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666666666666666666666665332 45566666666666666666666666666542 2244556666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 010458 324 LVKL-GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401 (510)
Q Consensus 324 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (510)
+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 6666 77777777777666521112 2345666666777777777777777777665322 4566777777777777777
Q ss_pred HHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 402 KVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
+|...++++.+. .+ .+...+..+...+...|+.+.|..+++.+.+..|.++....
T Consensus 165 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777653 22 35566666666677777777777777777766666555443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.4e-14 Score=135.54 Aligned_cols=229 Identities=9% Similarity=-0.029 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKK-SAEAEALMEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
...|..+..++...|++++|+..++++....|+ ..+|+.+..++...|+ +++|+..|++..+.... +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345566666666667777777777776666553 5666666667777775 77777777777665422 45566667777
Q ss_pred HHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHH
Q 010458 185 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKA 263 (510)
Q Consensus 185 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 263 (510)
+...|++++|+..|+++.+..+.+..+|..+..++...|++++|+..++++++.. +.+...|+.+..++.+ .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 7777777777777777766666666777777777777777777777777766654 2355666666666666 4444555
Q ss_pred -----HHHHHHHHHccCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC--------
Q 010458 264 -----ATTLKEMEKRTCRKNRVAYSSLLSLYTNMG--YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-------- 328 (510)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 328 (510)
+..|++.....+. +...|..+...+...| ++++|++.+.++ +. ...+...+..+..++.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3666666665444 5556666666666665 466666666665 21 2223345556666665543
Q ss_pred -CHHHHHHHHHHH
Q 010458 329 -EFEKAENIYDEW 340 (510)
Q Consensus 329 -~~~~a~~~~~~~ 340 (510)
..++|.++++.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135666666666
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=6.4e-15 Score=129.80 Aligned_cols=212 Identities=11% Similarity=0.060 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (510)
..|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++..... .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 34445555555566666666666665554322 455555556666666666666666666555421 2344555556666
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665543 22445566666677777777777777777666532 25566777777777777777777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
..++++.+. .+.+..++..+..++...|++++|...++++.+..+.+...+..+..
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 777777753 23456677777777788888888888888887777776666655543
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.4e-14 Score=139.75 Aligned_cols=366 Identities=11% Similarity=0.032 Sum_probs=248.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCh---HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-----Chh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY---KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-----GLS 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 124 (510)
++|.+.|++..+.| ++.++..+...+...|++ ++|+..|+...+. ++..+..+..++...+ +.+
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 89999999988877 344556666677778888 8999999988743 6677777777555544 788
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSA---EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
+|...|++..+.++ +..+..|...|...+..+ ++.+.+......| ++..+..|...|...+.++++.+....+
T Consensus 92 ~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 92 EAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999887643 447777888887766544 3455555555544 5678888899999988887777665555
Q ss_pred HhC-CCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHc
Q 010458 202 KKN-TSPDVVTYNLWLAACASQN---DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----ELPEKAATTLKEMEKR 273 (510)
Q Consensus 202 ~~~-~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 273 (510)
.+. ...+..++..+...|...| +.++|.+.|++..+.| .++...+..|...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 444 3335558889999999999 9999999999998887 46666666778777665 79999999999987 3
Q ss_pred cCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhccC
Q 010458 274 TCRKNRVAYSSLLSL-Y--TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-----EFEKAENIYDEWESISG 345 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 345 (510)
-+...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 246 ---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 246 ---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp ---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 256677777777 4 56899999999999998765 5666777777776 55 9999999999877
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCC
Q 010458 346 TGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKW 417 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 417 (510)
..++..+..|...|.. ..+.++|..+|++..+.|. ......+...|.. ..++.+|..+|+.+.+. +.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--g~ 389 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ--DT 389 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--CC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 3366777778877776 3499999999999998763 3455566666654 46899999999999875 42
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 418 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
++.......+......++..+|..+.++..+
T Consensus 390 -~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 -PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2222222222222233456677777766544
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=2.6e-14 Score=126.76 Aligned_cols=200 Identities=7% Similarity=-0.105 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
...|..+...+...|++++|++.|+.+.+.. |.++..+..+...+...|++++|.+.++++.+..| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4456666667777777777777777776653 45566666666777777777777777776665544 35566666666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+..+.+..++..+..++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666777777777776666522222 2344555556666666666666666665555444555566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655432 234445555555566666666666666665554
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=4.5e-15 Score=133.49 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+..+...+...|++++|...|++++
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555555554
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=4.2e-14 Score=122.81 Aligned_cols=201 Identities=8% Similarity=-0.060 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...|..+...+...|++++|+..|+.+.+.. |.++..+..++..+...|++++|.+.++++....| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34455666666666666666666666666553 44555666666666666666666666666555444 3455555666
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 149 SYVQN-KKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 149 ~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+.+...+..+..++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 66666 666666666666555211111 2344444455555555555555555544443334444444444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555554443332112333444444444444444444444444443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=5.3e-15 Score=130.32 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...|..+...+...|++++|+..|+.+.+.. |.+...+..+...+...|++++|...++++.+..| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 33445555555555566666666666555542 44455555555555555555555555555544433 2445555555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+..+.+...+..+..++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554331 13334444444445555555555555544444333444444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 44444443332 123334444444444444444444444444443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.9e-13 Score=122.83 Aligned_cols=241 Identities=11% Similarity=-0.036 Sum_probs=178.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 221 SQNDKETAEKAFLELKKTKID---PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
..|++++|...++++.+.... .+..++..+...+...|++++|...|+++.+..+. +...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 457788888888888765321 23566778888888888888888888888887544 67788888888888899999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377 (510)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (510)
|...++++..... .+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999888887532 256778888888888999999999998888653 3433444445555677899999999988777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 378 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
... ++...+ .++..+...++.++|+..+.++........| +..++..+..++.+.|++++|...|+++.+.+|.+..
T Consensus 173 ~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 532 344444 4677778888889999999998864111111 1578889999999999999999999999998876633
Q ss_pred HHHHHHHHHHHcCC
Q 010458 457 IYNSLLRTYAKAGK 470 (510)
Q Consensus 457 ~~~~l~~~~~~~g~ 470 (510)
.+ ..++...|+
T Consensus 251 ~~---~~~~~~l~~ 261 (275)
T 1xnf_A 251 EH---RYALLELSL 261 (275)
T ss_dssp HH---HHHHHHHHH
T ss_pred HH---HHHHHHHHH
Confidence 33 444455555
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.3e-12 Score=117.25 Aligned_cols=222 Identities=13% Similarity=-0.010 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888999999999999999999999883 356788889999999 999999999999998865 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 319 CVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 319 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88999999 999999999999998764 67788899999999 999999999999999975 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 391 TWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 391 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
...|.. .+++++|+.+|+++.+. .+...+..+...|.. .+++++|...+++..+.++ +..+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 888888 99999999999999975 356888889999999 9999999999999998864 77888999
Q ss_pred HHHHH----cCC--ChHHHHHHHHhCC
Q 010458 463 RTYAK----AGK--MPLIIVERMQKDN 483 (510)
Q Consensus 463 ~~~~~----~g~--~a~~~~~~m~~~~ 483 (510)
..|.. .++ +|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 777 8999999998865
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.7e-14 Score=137.62 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGY--------------------KDEVLR 300 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 300 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555555555555555554432110 01 2245555556666666 666666
Q ss_pred HHHHHHHhc--C--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cchHHHHHHHHHhcCCHHHHHH
Q 010458 301 IWKKMMSLF--A--KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 301 ~~~~~~~~~--~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
.+++..... . .+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 666554321 0 11 1234666666777777777777777776643211 11 2256777778888888888888
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010458 371 FYNRLVTKGIK-PC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAE 441 (510)
Q Consensus 371 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 441 (510)
.+++..+.... ++ ..++..+...|...|++++|...++++.+.... .++ ..++..+..+|...|++++|.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877642111 11 446778888888899999999999888763111 112 557778888899999999999
Q ss_pred HHHHHHHhCCC----C--CHHHHHHHHHHHHHcCC
Q 010458 442 HLLVTLRNAGH----V--STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 442 ~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~ 470 (510)
..+++..+... . ...++..+...+...|+
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99988765421 1 35678888888888886
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=137.23 Aligned_cols=96 Identities=10% Similarity=-0.099 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh----hhHHHHHHHHHHhcChhhHHHHHHhcccC----C--C-
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS----GDYAVHLDLISKIRGLSSAENFFENLPDK----M--R- 138 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~- 138 (510)
....+......+...|++++|+..|+.+.+.. |.++ ..+..+...+...|++++|...++++... + +
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34444555555555566666666665555542 2221 23444455555555555555555543222 0 0
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
...++..+...+...|++++|...+++..
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334444444444555555555444443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=3.7e-14 Score=135.66 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=159.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
.+..+...+...|++++|...|+++.+.+ |+. ..|..+...|...|++++|...+++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34445556666777777777777666643 222 245555555555566666666555544320
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-----CCCChhhHHHHHHHHH
Q 010458 217 AACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-----CRKNRVAYSSLLSLYT 290 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 290 (510)
...+. ......+..+...|...|++++|...+++..+.. ......++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 00000 1112233444444444455555444444443320 0112234455555555
Q ss_pred hcCC-----------------HHHHHHHHHHHHHhc----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-C
Q 010458 291 NMGY-----------------KDEVLRIWKKMMSLF----AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-G 347 (510)
Q Consensus 291 ~~~~-----------------~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 347 (510)
..|+ +++|...+++..... ..+ ....+..+...+...|++++|...+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 555555555543321 001 1134556666677777777777777766543211 1
Q ss_pred C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-
Q 010458 348 D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW- 417 (510)
Q Consensus 348 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 417 (510)
+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|..++++++......
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 125667777888888888888888877653110 114567788888899999999999998887641111
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 418 --VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 418 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.....++..+..+|...|++++|...+++..+...
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11134777888899999999999999999887643
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.6e-14 Score=138.25 Aligned_cols=239 Identities=12% Similarity=-0.005 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh----hhHHHHHHHHHHhcChhhHHHHHHhcccC------CC-Ch
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS----GDYAVHLDLISKIRGLSSAENFFENLPDK------MR-GP 140 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~ 140 (510)
..+..+...+...|++++|+..|+.+.+.. |.++ ..+..+...+...|++++|...++++.+. .+ ..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 334455566666777777777777766653 2333 34556666666667777766666665432 01 13
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.++..+...|...|++++|...+++..+..... ++ .+....++..+...+.
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~--------------~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GD--------------RLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TC--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hc--------------hHHHHHHHHHHHHHHH
Confidence 455555555666666666666655544320000 00 0002334445555555
Q ss_pred hcCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-C
Q 010458 221 SQND-----------------KETAEKAFLELKKT----KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K 277 (510)
Q Consensus 221 ~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 277 (510)
..|+ +++|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555443221 10 111234555666666666666666666665543111 0
Q ss_pred C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 278 N----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----NDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 278 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
+ ..++..+...|...|++++|...+++........ ...++..+...+...|++++|...+++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1245556666666666666666666554431110 01234444455555555555555555444
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=2.5e-14 Score=132.45 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGI-----KPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+..+...+...|++++|...+++..+... .....++..+...|...|++++|...++++.+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555555554433100 00122444555555556666666666665554
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=2.1e-12 Score=118.08 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHccCcccChhhHHHHHHHHHH-------hcCh-------hhHHHHHHhccc-CCCC-hhhHHHHHHHHH
Q 010458 88 KHALEVCEWMELQYDIKLVSGDYAVHLDLISK-------IRGL-------SSAENFFENLPD-KMRG-PDTCSALLHSYV 151 (510)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~ 151 (510)
++|+..|+.+.... |.++..|...+..+.. .|++ ++|..+|++... ..|+ ...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67888899888864 7788888888877753 4775 788888888887 4564 567888888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC-cc-hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCCHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKC-PL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA-SQNDKETA 228 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 228 (510)
..|++++|..+|++..+.. |+ .. .|..++..+.+.|++++|.++|++..+..+++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888743 43 33 67777777777788888888888777765555555544433322 25777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777765542 2356667777777777777777777777777652 233 3456666777777777777777777777
Q ss_pred HHh
Q 010458 306 MSL 308 (510)
Q Consensus 306 ~~~ 308 (510)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.7e-13 Score=126.85 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGY--------------------KDEVLR 300 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 300 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3445555555555555555555554432110 01 2245555556666666 666666
Q ss_pred HHHHHHHh----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cchHHHHHHHHHhcCCHHHHHH
Q 010458 301 IWKKMMSL----FAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 301 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
.+++.... +..+ ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554332 1011 1234566666677777777777777776542211 11 2256677778888888888888
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 371 FYNRLVTKGIK-PC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW---VPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 371 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+++..+.... ++ ..++..+...+...|++++|...++++.+..... .....++..+...+.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88877642111 11 4467778888889999999999998887531111 1114467778888889999999999
Q ss_pred HHHHHHhCC
Q 010458 443 LLVTLRNAG 451 (510)
Q Consensus 443 ~~~~~~~~~ 451 (510)
.+++..+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 998887654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=9.7e-12 Score=113.60 Aligned_cols=220 Identities=9% Similarity=-0.047 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHH-ccCCCChhhHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYI-------KMELP-------EKAATTLKEMEK-RTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 290 (510)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45555565554432 234455555555543 23554 677777777766 2222 4456667777777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCh-h-hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMND-A-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI-NRNQLEM 367 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 367 (510)
..|++++|..+|+++.+. .|+. . .|..++..+.+.|++++|..+|++..+..+ ++...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777663 3332 2 566666677777777777777777765432 23333433322211 2577777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVP--DHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
|..+|++..+..+. +...|..++..+.+.|++++|..+|++++.. . ++| ....|..++..+.+.|+.+.|..++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87777777765322 5667777777777778888888888887763 2 344 3567777777777778888888888
Q ss_pred HHHHhCCCC
Q 010458 445 VTLRNAGHV 453 (510)
Q Consensus 445 ~~~~~~~~~ 453 (510)
+++.+..|.
T Consensus 265 ~~a~~~~p~ 273 (308)
T 2ond_A 265 KRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHccc
Confidence 877776665
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.1e-12 Score=124.20 Aligned_cols=231 Identities=9% Similarity=0.048 Sum_probs=167.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC------ChhhHH
Q 010458 215 WLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK------NRVAYS 283 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 283 (510)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566677889999999999887653 1111 24567888888999999999999988877652111 134678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----cC-CCCcchHH
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-D----AEYTCVISSLVKLGEFEKAENIYDEWESI----SG-TGDPRVPN 353 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 353 (510)
.+...|...|++++|...+++........+ . .++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988876422111 1 36777888888999999999999888762 22 22355678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKG----IKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITA 426 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~~~~ 426 (510)
.+...|...|++++|...+++..+.. -......+..+...+...|+ +++|+.++++.. ..+.....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence 88889999999999999998876531 11112235667777888888 778888887763 22334557778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999988765
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=8.3e-13 Score=110.75 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+.+|..+...|...|++++|++.|++..+.... +..+|..+..++.+.|++++|...+.......+.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 444444555555555555555555554443311 3334444444555555555555555544444444444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555544432 223444555555555555555555555555554332 4445555555555555555555
Q ss_pred HHHHHHHH
Q 010458 300 RIWKKMMS 307 (510)
Q Consensus 300 ~~~~~~~~ 307 (510)
..|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=6e-13 Score=125.91 Aligned_cols=227 Identities=11% Similarity=-0.042 Sum_probs=112.5
Q ss_pred HHhccChHHHHHHHHHHHHcc-CcccChh--hHHHHHH--HHHHhcChhhHH-----------HHHHhcccCCCChh---
Q 010458 81 LRKLKRYKHALEVCEWMELQY-DIKLVSG--DYAVHLD--LISKIRGLSSAE-----------NFFENLPDKMRGPD--- 141 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~~l~~--~~~~~g~~~~A~-----------~~~~~~~~~~~~~~--- 141 (510)
+.+.+++++|..+++++.+.- ....+.. .|..++. ...-.++++.+. +.++.+.....+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 456789999999999987642 1112332 2222222 122233344444 55555433211111
Q ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CC----CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCC----
Q 010458 142 ---TCSALLHSYVQNKKSAEAEALMEKMSECGF-LK----CPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSP---- 207 (510)
Q Consensus 142 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---- 207 (510)
.+......+...|++++|...|++..+.-. .+ ...++..+...|...|++++|...+++..+. ..+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 122244556677777777777777665310 01 1234556666666666666666666665443 111
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----cC-C
Q 010458 208 -DVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKR----TC-R 276 (510)
Q Consensus 208 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 276 (510)
...+++.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555555555566666666555554321 1000 1124445555555555555555555555441 11 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
....++..+...+...|++++|...+++...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233445555555555555555555555433
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=9.3e-14 Score=134.88 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh-hhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL-SSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (510)
+++++..++...... +.+...+..+...+...|++ ++|++.|+++.+..|+ ...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554432 44566666666666677777 7777777766666553 5666666777777777777777777
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhC---------CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CCHHH
Q 010458 165 KMSECGFLKCPLPYNHMLNLYISN---------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ--------NDKET 227 (510)
Q Consensus 165 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 227 (510)
+..+.. |+...+..+...+... |++++|++.|++..+..+.+...|..+..++... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 666654 5555666666666666 6666666666666665555666666666666666 66666
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 228 AEKAFLELKKTKID--PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302 (510)
Q Consensus 228 a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (510)
|...|++..+.... .+...|..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|++.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666554210 25556666666666666666666666666655433 4455556666666666666655544
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.8e-12 Score=107.47 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...|..+...|.+.|++++|++.|++..+..+. +..++..+..+|...|++++|...+........ .+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555555555555555555555555554333 444455555555555555555555555444321 123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...++++.+...+.+..+.. +.+...+..+..+|...|++++|+..|++..+..+. +...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444555555555555444332 123344444445555555555555555555443221 344444555555555555555
Q ss_pred HHHHHHHh
Q 010458 404 LECFKKAI 411 (510)
Q Consensus 404 ~~~~~~~~ 411 (510)
++.|++++
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=2.1e-10 Score=114.45 Aligned_cols=392 Identities=9% Similarity=-0.032 Sum_probs=274.0
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCC---HHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKK---SAEAEAL 162 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~A~~~ 162 (510)
..+-+..|+.....+ |.+...|..++..+.+.+.++.+..+|+.+....| ....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555666666665 78999999999999999999999999999998877 47889999998888899 9999999
Q ss_pred HHHHHhCC-CCCCcchHHHHHHHHHhCCCc--------CcHHHHHHHHHhC-C--CC-ChhHHHHHHHHHHh--------
Q 010458 163 MEKMSECG-FLKCPLPYNHMLNLYISNGQL--------DKVPQMLQELKKN-T--SP-DVVTYNLWLAACAS-------- 221 (510)
Q Consensus 163 ~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~--~~-~~~~~~~l~~~~~~-------- 221 (510)
|++..... .+|++..|...+....+.++. +.+.++|+..... + .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998864 247888898888776666654 2344777776654 2 23 56788888876542
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHc--cCC---CC----
Q 010458 222 -QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-------------MELPEKAATTLKEMEKR--TCR---KN---- 278 (510)
Q Consensus 222 -~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~--~~~---~~---- 278 (510)
.++++.+..+|+++.......-..+|......--. ..+++.|...+.++... ++. |.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34578899999998864322223344322221111 12334455555554322 111 11
Q ss_pred ----------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH-
Q 010458 279 ----------------RVAYSSLLSLYTNMG-------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE- 334 (510)
Q Consensus 279 ----------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 334 (510)
...|...+..--..+ ..+.+..+|+++... .+-....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 123444444333322 134466788888876 3346677888888888889999996
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 010458 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---------KPC------------YTTWELLTWG 393 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 393 (510)
++|+...... +.+...|-..+....+.|+++.|..+|+++.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998643 44566677788888899999999999999886310 132 2367888888
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-- 470 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 470 (510)
..+.|..+.|..+|.++++. .-.+...+|...+..-.+.| +.+.|..+|+...+..+.++..|...+......|+
T Consensus 444 erR~~~l~~AR~vf~~A~~~--~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRL--KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHT--GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999874 12223445544444444444 59999999999999877788899999998888898
Q ss_pred ChHHHHHHHHhCCC
Q 010458 471 MPLIIVERMQKDNV 484 (510)
Q Consensus 471 ~a~~~~~~m~~~~~ 484 (510)
.|..+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999987654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=2.9e-13 Score=131.43 Aligned_cols=213 Identities=9% Similarity=-0.072 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCh-HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY-KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
+++...++..... .+.+...|..+...+...|++ ++|++.|++..+.. |.++..+..+..++...|++++|.+.|+
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444555554432 345788899999999999999 99999999999875 6788999999999999999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHhC---------CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC--------CCcCcH
Q 010458 132 NLPDKMRGPDTCSALLHSYVQN---------KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--------GQLDKV 194 (510)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~a 194 (510)
++.+..|+...+..+...+... |++++|+..|++..+... .+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9999989888999999999999 999999999999998763 2577899999999988 999999
Q ss_pred HHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 195 PQMLQELKKNTS---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 195 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
++.|++..+..+ .+...|..+..++...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998766 689999999999999999999999999987764 345677888999999999999988766544
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=1.9e-11 Score=115.36 Aligned_cols=233 Identities=12% Similarity=0.017 Sum_probs=170.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-C-----Chh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKI-DP----DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K-----NRV 280 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~ 280 (510)
+......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+.... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33455567788999999999998765311 12 2456778888999999999999999887764211 1 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCCCcc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENIYDEWES-----ISGTGDPR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 350 (510)
+++.+..+|...|++++|...+++....... ++ ..++..+..++...|++++|...+++..+ ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 6788889999999999999999888764211 11 24577788889999999999999998876 3322 366
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCCHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI---KP-CYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRL 423 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~ 423 (510)
++..+..+|.+.|++++|...+++..+... .| ....+..+...+...++ +.+|+.++++.. ..+.....
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----~~~~~~~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----ChhHHHHH
Confidence 778888999999999999999998886321 12 23345666666777777 778888887732 22233456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888899999999999999988765
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=124.97 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=129.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------c
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------T 274 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 274 (510)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666665442 11223445566666666677777777666666543 1
Q ss_pred C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 010458 275 C-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF------AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI--- 343 (510)
Q Consensus 275 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 343 (510)
- .....++..+...|...|++++|..+++++.... ..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1124456666666777777777777776665531 111 1234566666667777777777777766543
Q ss_pred ---cCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 010458 344 ---SGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCYT-------TWELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 344 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~a~~ 405 (510)
+..| ...++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1011 2334566667777777777777777776642 1111111 11222223333445555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
.++.... ..+....++..+..+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6665553 22334566777888888888888888888877654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=126.37 Aligned_cols=168 Identities=18% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcc------CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC-----
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQY------DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM----- 137 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 137 (510)
.+..++..+...+...|++++|+.+|+.+.+.. ..+.....+..+...+...|++++|...++++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 345667888888999999999999999887731 124455677788888888899999888888776541
Q ss_pred ---C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------CCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--
Q 010458 138 ---R-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC------GFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-- 204 (510)
Q Consensus 138 ---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 204 (510)
+ ...++..+...+...|++++|...|++..+. +..| ....+..+...+...|++++|.+++++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 2566777888888888888888888877653 1111 2234555566666666666666666665443
Q ss_pred -C----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 205 -T----SP-DVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 205 -~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
. .| ...++..+..++...|++++|...++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 11 23445555555666666666666665554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=8.9e-11 Score=110.46 Aligned_cols=267 Identities=12% Similarity=0.024 Sum_probs=142.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCC----hhHHHHH
Q 010458 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD----VVTYNLW 215 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l 215 (510)
....+...|++++|...+++........+.. +++.+...+...|++++|...+++.... ..++ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344455666666666666655533111111 2344445555566666666666655432 1111 1234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC----ChhhHHH
Q 010458 216 LAACASQNDKETAEKAFLELKK----TKID--P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK----NRVAYSS 284 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 284 (510)
...+...|++++|...+++..+ .+.. | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666667777777777666533 1211 2 23345556667777777777777777766542211 1234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCCC---cchHHHH
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYT-----CVISSLVKLGEFEKAENIYDEWESISGTGD---PRVPNIL 355 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 355 (510)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++...+....+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 666677777777777777776554222211 1111 122335566777777777766654321111 1123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 356 LAAYINRNQLEMAESFYNRLVTK----GIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666677777777776665432 111111 2444555666666777777777766654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=4.4e-11 Score=112.80 Aligned_cols=239 Identities=9% Similarity=-0.065 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHH--HhccChHHHHHHHHHHHHcc-CcccChhh--HHHHHHH--HHHhcChhhHH---------HHHH
Q 010458 68 TVHKYELNRIVREL--RKLKRYKHALEVCEWMELQY-DIKLVSGD--YAVHLDL--ISKIRGLSSAE---------NFFE 131 (510)
Q Consensus 68 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~~l~~~--~~~~g~~~~A~---------~~~~ 131 (510)
.|+...-+.+-.-| ...+++++|..+++++.+.. ....+... |..++.. ..-.+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444444444 67889999999998876642 11112222 2222221 11223333333 4444
Q ss_pred hcccCC-C-C-h---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 132 NLPDKM-R-G-P---DTCSALLHSYVQNKKSAEAEALMEKMSECGFL-KC----PLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 132 ~~~~~~-~-~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
.+.... + + . ..+......+...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 433221 0 1 0 12223344455667777777777666543110 11 22445555555556666666555555
Q ss_pred HHhC--CCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 201 LKKN--TSP-----DVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 201 ~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
..+. ..+ ...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4432 111 1234445555555555555555555543321 1000 12234444445555555555555555
Q ss_pred HHHH-----ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 269 EMEK-----RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 269 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+..+ ..+. ...++..+...+.+.|++++|...+++...
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4443 2111 233444444444445555555554444443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.2e-10 Score=109.61 Aligned_cols=272 Identities=10% Similarity=0.079 Sum_probs=196.9
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPD-V----VTYNLWLAACASQNDKETAEKAFLELKKTKI-DPD----WISYS 248 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~ 248 (510)
......+...|++++|...+++.....+++ . .+++.+...+...|++++|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556678999999999999988764332 2 2567777888899999999999998654210 112 23356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcc----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----ChhhH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRT----CR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAEY 317 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 317 (510)
.+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++........ ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77888999999999999999887642 11 2 23456778889999999999999999987753321 12457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc-chHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHH
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWE 388 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~ 388 (510)
..+...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888889999999999999998764322222 1222 233447789999999999998876543221 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccC--CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
.+...+...|++++|...++++..... +..++. .++..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778889999999999999998875311 111122 36667788899999999999999988654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=4.4e-11 Score=104.02 Aligned_cols=209 Identities=11% Similarity=-0.054 Sum_probs=159.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (510)
.|+..+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..+++....... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888889999999999999999999998866467788888999999999999999999999875322 456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010458 322 SSLVKLGEFEKAENIYDEWESISGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWELLT 391 (510)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 391 (510)
.++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999875432 34 45777888888999999999999999886 454 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
..|... +...++++... ...+...+.... ....+.+++|...+++..+..|.++.+...+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777544 34455666543 223444444433 3445678999999999999998887776665443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=3.5e-11 Score=100.57 Aligned_cols=164 Identities=14% Similarity=0.019 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..+..+...+...|++++|...++.+.+..| +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666667777777777777666544 35566666666677777777777776666543 123445555555555
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
..|++++|.+.++++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666665555544455555555555555555555555555554432 23344555555555555555555555
Q ss_pred HHHHHHc
Q 010458 267 LKEMEKR 273 (510)
Q Consensus 267 ~~~~~~~ 273 (510)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555443
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=5.6e-11 Score=107.55 Aligned_cols=237 Identities=9% Similarity=0.059 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQ--N-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+|.+++.+..+..++....| .+ + +. + ++++|...|++. +..|...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 356666666665544322222 11 1 22 1 366666666554 334566777777777777
Q ss_pred HHHHc----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhc-CCHHHHHHHH
Q 010458 269 EMEKR----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKL-GEFEKAENIY 337 (510)
Q Consensus 269 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-~~~~~a~~~~ 337 (510)
+..+. |-.+ ...+|+.+..+|...|++++|+..+++......... ..++..+..+|... |++++|...|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 66553 1111 134677777777777777777777777655321111 23566666677774 7777777777
Q ss_pred HHHHhccCCC-C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 010458 338 DEWESISGTG-D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 338 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
++..+..... + ..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7766532211 1 234666777777778888888888777765433221 1456666777777888888888
Q ss_pred HHHHhhccCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCC
Q 010458 407 FKKAIGSVRKWVPDH------RLITAAYNKLE--EQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 407 ~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 452 (510)
|+++++. .|+. ..+..++.++. ..+++++|...|+++...++
T Consensus 222 ~~~al~l----~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 222 LQEGQSE----DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHhh----CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 8777743 3321 12334444443 34556777776666554433
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=3.3e-11 Score=100.74 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+..+.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455555566666666666666666554331 234445555555556666666666666555544445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 234445555555555555555555555555554322 34455555555555555555555
Q ss_pred HHHHHHH
Q 010458 301 IWKKMMS 307 (510)
Q Consensus 301 ~~~~~~~ 307 (510)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1e-11 Score=125.36 Aligned_cols=167 Identities=9% Similarity=0.004 Sum_probs=149.3
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
|-+..+|+.+...+.+.|++++|++.|++..+.. |.+...+..+..++.+.|++++|+..|+++.+..|+ ..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3356789999999999999999999999999875 778889999999999999999999999999888775 7899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
..+|...|++++|++.|++..+.... +..+|+.+..+|...|++++|++.|++..+..+.+...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999887522 56789999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010458 227 TAEKAFLELKK 237 (510)
Q Consensus 227 ~a~~~~~~m~~ 237 (510)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888643
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.4e-11 Score=124.34 Aligned_cols=169 Identities=10% Similarity=-0.033 Sum_probs=149.4
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
.|.++..++.+..++.+.|++++|++.|+++.+..|+ ..+|..+..+|.+.|++++|++.|++..+.+.. +..+|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3567788999999999999999999999999988775 789999999999999999999999999887622 56789999
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..++...|++++|++.|++..+..+.+..+|+.+..++...|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988877789999999999999999999999999988764 345788999999999999999
Q ss_pred HHHHHHHHHHHc
Q 010458 262 KAATTLKEMEKR 273 (510)
Q Consensus 262 ~A~~~~~~~~~~ 273 (510)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=8.1e-11 Score=102.32 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcc-cChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIK-LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
.++..|......+...|++++|+..|+...+.. | ++...+..+..++...|++++|+..+++..+..|+ ..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 455677777777777788888888888777764 3 56666666777777777777777777777776664 5667777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCC-c-------chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC--ChhHHHHHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKC-P-------LPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWL 216 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 216 (510)
...+...|++++|...|++..+.. |+ . ..|..+...+...|++++|++.|++..+..+. +..++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 777777777777777777777654 33 2 23444455555555555555555555554333 344444444
Q ss_pred HHHH
Q 010458 217 AACA 220 (510)
Q Consensus 217 ~~~~ 220 (510)
.++.
T Consensus 161 ~~~~ 164 (228)
T 4i17_A 161 VLFY 164 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=6.9e-11 Score=106.19 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=111.2
Q ss_pred HhCCCcCcHHHHHHHHHhC-------C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKN-------T-SPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTL 250 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 250 (510)
...|++++|...|++..+. . +....++..+..++...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888776652 1 124667888888888888988888888887543 11 2235567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcc-----C--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh------cCCC-Chhh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRT-----C--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL------FAKM-NDAE 316 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 316 (510)
...|...|++++|...+++..+.. . +....++..+...|...|++++|..+++++... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888877651 1 123556778888888888888888888887664 1122 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+..+..++...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777778888888888888877765
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.3e-10 Score=104.35 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=155.4
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc------C-CCChhhHHHHH
Q 010458 221 SQNDKETAEKAFLELKK-------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT------C-RKNRVAYSSLL 286 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~ 286 (510)
..|++++|...+++..+ ...+....++..+...|...|++++|...++++.+.. - +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666533 2223346678899999999999999999999987651 1 22356788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhc-----C-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------c-CCCCcchH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLF-----A-KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI------S-GTGDPRVP 352 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 352 (510)
..|...|++++|..+++++.... . .| ....+..+...+...|++++|...++++.+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999987651 1 12 2456888889999999999999999998764 1 11134567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhccCCCC
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTK-------GIKPC-YTTWELLTWGYLKKGQ------MEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~ 418 (510)
..+..+|...|++++|..+++++.+. ...+. ...|..+...+...+. +..+...++.... ..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 249 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DSP 249 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CCH
Confidence 88899999999999999999988763 11222 2233333333333222 2233333332221 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23457788899999999999999999988754
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=3.1e-09 Score=94.26 Aligned_cols=159 Identities=10% Similarity=0.064 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-----CYTTWELL 390 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l 390 (510)
+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHH
Confidence 33444444455555555555554443322 112333444445555555555555555555443 23 12333333
Q ss_pred HHH--HHhcC--CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCCHH
Q 010458 391 TWG--YLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA----------GHVSTE 456 (510)
Q Consensus 391 ~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~ 456 (510)
+.+ ....| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.+. ++.++.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 333 11122 455555555554432 233222222222455555555555555544332 133444
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHh
Q 010458 457 IYNSLLRTYAKAGKMPLIIVERMQK 481 (510)
Q Consensus 457 ~~~~l~~~~~~~g~~a~~~~~~m~~ 481 (510)
+...+|......|++|.+++.++.+
T Consensus 257 ~LaN~i~l~~~lgk~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGLDTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHH
Confidence 4434444444444455555555544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=5.2e-09 Score=92.79 Aligned_cols=79 Identities=10% Similarity=-0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
+...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333333444455555555555555554444332 1133444444555555555555555555554
Q ss_pred H
Q 010458 307 S 307 (510)
Q Consensus 307 ~ 307 (510)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.6e-09 Score=97.98 Aligned_cols=208 Identities=9% Similarity=-0.008 Sum_probs=151.9
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDPD-WISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 264 (510)
++++|...|++. +..|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777765 44677889999999998886442 32222 467888999999999999999
Q ss_pred HHHHHHHHccCCC-C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHH
Q 010458 265 TTLKEMEKRTCRK-N----RVAYSSLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKA 333 (510)
Q Consensus 265 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a 333 (510)
..|++..+..... + ..++..+...|... |++++|+..|++........+ ..++..+...+...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999887652211 1 35788899999996 999999999999877532111 24578888999999999999
Q ss_pred HHHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHH
Q 010458 334 ENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNRLVTKGIKP-C---YTTWELLTWGYL--KKGQME 401 (510)
Q Consensus 334 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~--~~~~~~ 401 (510)
...|++..+..+..... .+..+..++...|++++|...|++..+..+.. + ...+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999998765443321 46777888999999999999999988743211 1 113444556664 456788
Q ss_pred HHHHHHHHHh
Q 010458 402 KVLECFKKAI 411 (510)
Q Consensus 402 ~a~~~~~~~~ 411 (510)
+|+..|+++.
T Consensus 258 ~A~~~~~~~~ 267 (292)
T 1qqe_A 258 EHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHhccCC
Confidence 9999988776
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=5.5e-10 Score=99.27 Aligned_cols=209 Identities=11% Similarity=-0.025 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----h
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----P 140 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 140 (510)
+.+...+..+...+.+.|++++|+..|+.+.+.. |.+ +..+..+..++...|++++|+..|+++.+..|+ +
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456667777778888888888888888887764 444 567778888888888888888888888776552 4
Q ss_pred hhHHHHHHHHHh--------CCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 141 DTCSALLHSYVQ--------NKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 141 ~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.++..+..++.. .|++++|...|+++.+.. |+. ..+..+... ..+... ....
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~--------------~~~~~~---~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI--------------RELRAK---LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH--------------HHHHHH---HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH--------------HHHHHH---HHHH
Confidence 566677777777 888888888888887754 432 222221110 000000 1112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHccCCCC-
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDP--DWISYSTLTSLYIKM----------ELPEKAATTLKEMEKRTCRKN- 278 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~- 278 (510)
+..+..++.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+..+...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4556777778888888888888876543211 234566677777755 777888888888877633311
Q ss_pred -hhhHHHHHHHHHhcCCHHH
Q 010458 279 -RVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 279 -~~~~~~l~~~~~~~~~~~~ 297 (510)
......+...+...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 1234445555555554443
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=4.9e-08 Score=94.58 Aligned_cols=363 Identities=10% Similarity=0.029 Sum_probs=229.5
Q ss_pred hcc-ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCC-HHHHH
Q 010458 83 KLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK-SAEAE 160 (510)
Q Consensus 83 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~ 160 (510)
+.| +++.|..+|+.+...- |. |+++.+..+|++....-|+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 345 3777888888887652 32 89999999999999988999999998888777663 45677
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHH----hCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc-----------
Q 010458 161 ALMEKMSEC-GFLK-CPLPYNHMLNLYI----SNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQ----------- 222 (510)
Q Consensus 161 ~~~~~~~~~-~~~p-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~----------- 222 (510)
.+|+..... |..| +...|...+..+. ..++.+.+.++|++.......+ ...|......-...
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 788877653 4323 5567777776554 2356778999999998742112 23344333322111
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 223 --NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--L-----PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 223 --~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++....+. +...|...+..+...|
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 123334445554432100113345655555432221 1 34567899998886443 6788888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc------------CCCCcchHHHHHHHHHh
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS------------GTGDPRVPNILLAAYIN 361 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~ 361 (510)
++++|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+....+
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999987 44433221 22222121221 22222110 00112456666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK-KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 440 (510)
.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++. .+-++..+...++...+.|+.+.|
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999 32 22344555433322222 34699999999999974 333455667778888899999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 441 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
+.+|+++ ......|...+.--...|+ .+..+++++..
T Consensus 374 R~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998 2367889999988888899 56667777653
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=3.7e-09 Score=93.82 Aligned_cols=190 Identities=9% Similarity=-0.067 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC-hhhHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN-DAEYTC 319 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ 319 (510)
..+-.+...+.+.|++++|...|+++.+..+. + ...+..+..+|...|++++|+..|+++.+..+. |. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444455555555555555555444222 1 334444555555555555555555555443211 11 123334
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 320 VISSLVK--------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 320 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
+..++.. .|++++|...|+++.+..+. +......+... ..+... ....+..+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~la 155 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHHHH
Confidence 4444444 55555555555555543211 11111111100 000000 001134455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCC
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 454 (510)
..|...|++++|+..|+++++..+........+..+..+|... |++++|...|+++.+..|.+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 5566666666666666666643111111234555555555544 66666776666666666554
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=2.2e-10 Score=92.04 Aligned_cols=144 Identities=10% Similarity=-0.016 Sum_probs=106.8
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 156 (510)
...+...|++++|+..++...... |..+..+..+...|.+.|++++|++.|+++.+..| ++.+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 344556678888888888876653 55566777788888888888888888888887766 477888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH-HHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
++|...|++..+.+.. +..+|..+...|.+.|++++|.+. +++..+..|.+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876522 466788888888888888776665 466666666677777777777666654
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=6e-10 Score=113.06 Aligned_cols=173 Identities=9% Similarity=-0.034 Sum_probs=135.8
Q ss_pred HhccChHHHHHHHHHHH--------HccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHh
Q 010458 82 RKLKRYKHALEVCEWME--------LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQ 152 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 152 (510)
...|++++|++.++... +.. |.+...+..+...+...|++++|++.|+++.+..| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788999999998887 443 66777888888888899999999999998887766 46788888888889
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
.|++++|.+.|++..+.... +...|..+..++.+.|++++ .+.|++..+..+.+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988876522 56778888888888999998 88888888877778888888888888889999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 233 LELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 233 ~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
++..+.. +.+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8876653 2235566667777665554
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=5.3e-08 Score=87.25 Aligned_cols=168 Identities=9% Similarity=0.026 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC------
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE--KAENIYDEWESISGTGDPRVPNILLAAYINRNQ------ 364 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 364 (510)
+++++++.+++.+.....+ +...|+.-.-++...|.++ ++++.++++.+..+. |...|+.-...+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555443221 3334444444444444444 555555555544322 44444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK-VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 443 (510)
++++++.+++++...+. |...|+.+...+.+.|+... +..+..++.+....-..++..+..++..+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 67777777777776544 66777777777777666433 44566655542001244677788888888888888888888
Q ss_pred HHHHHh-CCCCCHHHHHHHHH
Q 010458 444 LVTLRN-AGHVSTEIYNSLLR 463 (510)
Q Consensus 444 ~~~~~~-~~~~~~~~~~~l~~ 463 (510)
++.+.+ .+|.....|+..+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 888876 57767777766544
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=3.2e-09 Score=90.62 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+..+ .+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 555555555555555555555553211 334455555555555555555555555554432 234445555555443332
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 365 --LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 365 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.+.+...++.... ..|....+.....++...|++++|+..|++++
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233333333321 11112222333344444555666666666665
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=2.7e-10 Score=91.56 Aligned_cols=144 Identities=11% Similarity=0.100 Sum_probs=109.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 010458 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401 (510)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (510)
..+...|++++|+..++......+ .+...+..+...|.+.|++++|...|++.++..+. +...|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344556778888888887765332 23445667888888889999999999888886543 6778888888899999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL-LVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+|+..|+++++. .+-+..++..+...|.+.|++++|.+. ++++.+..|.++.+|+.....+...|+
T Consensus 83 ~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999988863 233577888888888888988766554 588888888888888888888777765
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2.4e-09 Score=83.94 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 214 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.++. +...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhc
Confidence 33444444444444444444443322 123333444444444444444444444444433221 3333444444444444
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
++++|..+++++.... +.+...+..+...+...|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444331 1123334444444444444444444444443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=1.1e-09 Score=90.81 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-H
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-Y 185 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 185 (510)
..+......+...|++++|+..|+++.+..| ++..+..+...+...|++++|+..|+...+.. |++..+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455555666666777777777766666554 35666666666667777777777766665543 322222211111 1
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 264 (510)
...+...+|...+++..+..+.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 122233446677777666655567777777777777777777777777776654322 2446667777777777777777
Q ss_pred HHHHHHHH
Q 010458 265 TTLKEMEK 272 (510)
Q Consensus 265 ~~~~~~~~ 272 (510)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.2e-09 Score=98.38 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH-HHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH-MLN 183 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 183 (510)
+...+..+...+...|++++|+..|+++....| ++..+..+...+...|++++|...++.+.... |+...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 334444444555555555555555555544444 24445555555555555555555555544432 22221111 112
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 262 (510)
.+...++.++|...+++.....+.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 23444555556666666555555556666666666666666666666666655543211 14455666666666666666
Q ss_pred HHHHHHHHH
Q 010458 263 AATTLKEME 271 (510)
Q Consensus 263 A~~~~~~~~ 271 (510)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.1e-09 Score=93.51 Aligned_cols=180 Identities=11% Similarity=-0.006 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
..+......+...|++++|+..|+...+.. |.++..+... ..... ....+.....+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch------------hhhhHHHHHHHHHHHH
Confidence 344444555666677777777777766653 3333333220 00000 0001222333666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND--KETAE 229 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~ 229 (510)
+.|++++|...|++..+.... +...|..+..++...|++++|...|++..+..+.+..++..+..++...|+ .+.+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666666665421 445566666666666666666666666666555566666666666544432 23334
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 230 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..++.... ..|....+..+..++...|++++|...|++..+.
T Consensus 145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44433321 1222222333444555566666666666666654
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=3.9e-08 Score=88.13 Aligned_cols=219 Identities=8% Similarity=-0.008 Sum_probs=144.0
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc--ChhhHHHHHHhcccCCCC-hhhHHHHHHHH----HhC---C
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR--GLSSAENFFENLPDKMRG-PDTCSALLHSY----VQN---K 154 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~----~~~---~ 154 (510)
...++|++.++.+...+ |....+|+.-..++...| ++++++++++.+....|. ..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34467888888888775 666677777777777777 888888888887777663 45555444444 444 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC--cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC------HH
Q 010458 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--KVPQMLQELKKNTSPDVVTYNLWLAACASQND------KE 226 (510)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 226 (510)
++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+.|..+|+.-.......+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 778888888888776533 6667777777777777777 78888888877766677777776666666655 66
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
++++.++++.... +-|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+..+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6677766665553 3456666666666666665333 334444444332 11245566666666666666666666666
Q ss_pred HHHH
Q 010458 304 KMMS 307 (510)
Q Consensus 304 ~~~~ 307 (510)
.+..
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=4.9e-09 Score=82.10 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 33444444455555555554444332 11333444444455555555555555555544321 23444445555555555
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
++++|.++++++.+. .+.+..++..+...+.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 555555555555542 1223445555555555555555555555555443
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=9.8e-09 Score=88.77 Aligned_cols=189 Identities=10% Similarity=-0.036 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--hhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 318 (510)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999988644311 356778889999999999999999999886433211 1344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 319 CVISSLVK------------------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 319 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
.+..++.. .|++++|...|+++.+..+. +...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH----
Confidence 44444443 34455555555555533211 111111110000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+|.+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRD----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01123456677788888888888888764 233 2467777888888888888888888887776653
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=5.8e-09 Score=90.21 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTC 143 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 143 (510)
...+..+...+.+.|++++|+..|+.+.+.. |.+ +..+..++.++.+.|++++|+..|+++.+..|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 4455566666777777777777777777653 222 2456667777777777777777777776665542 234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
..+..++...+.. .+ ..|..+...+...|++++|...|+++.+..+.+..++........
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~--- 141 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF--- 141 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH---
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH---
Confidence 4444444332210 00 011122223334566677777777776664444433322211100
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRI 301 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 301 (510)
+...+. .....+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.
T Consensus 142 -------~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 142 -------LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 000000 1112456677788888888888888877643311 24577778888888888888888
Q ss_pred HHHHHHhc
Q 010458 302 WKKMMSLF 309 (510)
Q Consensus 302 ~~~~~~~~ 309 (510)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 88776653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=3.1e-09 Score=107.87 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HhcCChHHHHHHHHHHH--------HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 010458 255 IKMELPEKAATTLKEME--------KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (510)
...|++++|++.+++.. +..+. +...+..+..++...|++++|+..|+++.+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56777777777777776 33222 5566777777777777777777777777765322 44567777777777
Q ss_pred cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010458 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
.|++++|...|++..+..+ .+...+..+..+|...|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777788777777776542 256667777777777787777 7777777775433 556777777777778888888888
Q ss_pred HHHHhhccCCCCCC-HHHHHHHHHHHHHcCC
Q 010458 407 FKKAIGSVRKWVPD-HRLITAAYNKLEEQGD 436 (510)
Q Consensus 407 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 436 (510)
|+++.+ ..|+ ...+..+..++...|+
T Consensus 557 ~~~al~----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT----TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc----cCcccHHHHHHHHHHHHccCC
Confidence 877764 3454 4456666666655444
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=6.9e-09 Score=94.50 Aligned_cols=130 Identities=8% Similarity=0.120 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---C--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-----cc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---N--DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 350 (510)
+|+.+..+|...|++++|+..|++........ . ..++..+..+|.. |++++|...|++..+.....+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 34444445555555555555555443321110 0 1234444444444 555555555555443211100 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKG----IKPC-YTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+++.+...|...|++++|...|++..+.. ..+. ...+..+..++...|++++|...|++++
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555566666666666666666555421 1011 1234444555555666666666666665
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=2e-09 Score=89.19 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH-HH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS-YV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~ 151 (510)
.+......+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..++.+....|++..+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 45667778889999999999999988875 7788899999999999999999999999998887744433332222 22
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
..+....|...+++..+... .+...+..+...+...|++++|...|+++.+..+. +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233457888888887652 25678889999999999999999999999887432 4668899999999999999999
Q ss_pred HHHHHHH
Q 010458 230 KAFLELK 236 (510)
Q Consensus 230 ~~~~~m~ 236 (510)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=2.8e-07 Score=89.23 Aligned_cols=204 Identities=11% Similarity=-0.009 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++.... + .+...|. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHH
Confidence 45667888876643 455777888888888889999999999998887 2 2332222 22222111221 2222
Q ss_pred HHhc---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh-cCCHHHHHHHH
Q 010458 306 MSLF---------AKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQLEMAESFY 372 (510)
Q Consensus 306 ~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~ 372 (510)
.+.- ..+ ....|...+....+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2210 001 1244666677777788899999999998 32 12233334322222222 33699999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 373 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+...+.... +...+...+....+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+..++++..+
T Consensus 344 e~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999885322 345566677777889999999999999742 477888888888888999999999988763
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=1.6e-08 Score=86.43 Aligned_cols=177 Identities=11% Similarity=-0.032 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc----ChhhHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR----GLSSAEN 128 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~ 128 (510)
++|.+.|++..+.| ++.++..+...+...+++++|+..|+...+.+ ++..+..+..+|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 34555555555543 45556666666666666666666666665543 44555555555554 4 5666666
Q ss_pred HHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHh----CCCcCcHHHHHH
Q 010458 129 FFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYIS----NGQLDKVPQMLQ 199 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 199 (510)
+|++..+. .++..+..|...|.. .+++++|..+|++..+.|.. .++.++..|...|.. .+++++|..+|+
T Consensus 75 ~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 75 LAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 66655433 234455555555554 55566666666655554410 013444445555544 444455555555
Q ss_pred HHHhCCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010458 200 ELKKNTSPDVVTYNLWLAACASQ-N-----DKETAEKAFLELKKTK 239 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~ 239 (510)
+..+. +++...+..+..+|... | ++++|...|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54433 22333344444444321 1 4445555554444433
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=6.3e-09 Score=93.67 Aligned_cols=167 Identities=8% Similarity=0.010 Sum_probs=105.9
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 218 (510)
+...+..+...+...|++++|...|++..+... -+...+..+...+.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 345566666667777777777777777766542 1445666677777777777777777777655533222222222333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010458 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 297 (510)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.. +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666777777766553 3456667777777777777777777777777764331 14567777777777777777
Q ss_pred HHHHHHHHHH
Q 010458 298 VLRIWKKMMS 307 (510)
Q Consensus 298 a~~~~~~~~~ 307 (510)
|...+++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=1.7e-08 Score=86.35 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCC----CHHHHHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK----KSAEAEALMEK 165 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~ 165 (510)
|++.|+...+.+ ++..+..+...+...+++++|+..|++..+.+ ++..+..|...|.. + ++++|.+.|++
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 445555554443 45555555555555566666666665554432 34444555555544 4 55555555555
Q ss_pred HHhCCCCCCcchHHHHHHHHHh----CCCcCcHHHHHHHHHhCCCC--ChhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010458 166 MSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACAS----QNDKETAEKAFLEL 235 (510)
Q Consensus 166 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 235 (510)
..+.| ++.++..|...|.. .+++++|+++|++..+..++ +..++..|...|.. .+++++|...|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54432 33344444444443 34444444444444433221 13344444444444 33444444444444
Q ss_pred Hh
Q 010458 236 KK 237 (510)
Q Consensus 236 ~~ 237 (510)
.+
T Consensus 156 ~~ 157 (212)
T 3rjv_A 156 SS 157 (212)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=7.8e-09 Score=94.15 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
.|++++|.+++++..+.. +. . .+...+++++|...|+. ....|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---~------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---S------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---C------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---c------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence 466677777777766542 11 1 11113555555555544 244566677777777777
Q ss_pred HHHHhCCCCC-C----cchHHHHHHHHHhCCCcCcHHHHHHHHH
Q 010458 164 EKMSECGFLK-C----PLPYNHMLNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 164 ~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 202 (510)
.+..+..... + ..+|+.+...|...|++++|+..|++..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6655421000 1 2244455555555555555555555543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=2.5e-08 Score=99.39 Aligned_cols=151 Identities=10% Similarity=0.001 Sum_probs=62.6
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
|++++|.+.|++..+..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444444333344444455555555555555555555544432 2234444445555555555555555555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL---GEFEKAENIYDEWES 342 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 342 (510)
+..+..+. +...+..+..+|...|++++|.+.+++..+... .+...+..+..++... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55444322 344444455555555555555555555444321 1233444444444444 555555555555444
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=1.3e-08 Score=101.29 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=81.0
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (510)
.|++++|.+.|++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666666655333 455666666666666777777777666665421 1345566666666666666666666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhc
Q 010458 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK---GQMEKVLECFKKAIGS 413 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 413 (510)
+++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66666543 224455666666666666666666666666654322 445566666666666 6666666666666653
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=4.3e-08 Score=75.80 Aligned_cols=111 Identities=10% Similarity=-0.019 Sum_probs=89.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+......|.+.|++++|+..|++.++.++. +...|..+..+|.+.|++++|+..|+++++. -+.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHH
Confidence 34666778888888888888888888876533 6778888888888899999999999988863 2345778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
++...|++++|.+.|++..+.+|.+...+..|..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 89999999999999999988888888877766543
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=6.4e-08 Score=84.66 Aligned_cols=189 Identities=9% Similarity=-0.102 Sum_probs=143.4
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHH-------HHHHHHhcChhhHHHHHHhcccCCCC----------------
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVH-------LDLISKIRGLSSAENFFENLPDKMRG---------------- 139 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~---------------- 139 (510)
..++...|.+.|..+.+.. |...+.|..+ ...+...++..+++..+.......|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999999986 7788888888 67888888888888877776664322
Q ss_pred ------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCC--hhH
Q 010458 140 ------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD--VVT 211 (510)
Q Consensus 140 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 211 (510)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......|. ..+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 2234556778889999999999999888755 443356666678888999999999998554432221 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHccC
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 275 (510)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77788888999999999999998875433243 34566677888889999999999999988743
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=7.1e-07 Score=80.80 Aligned_cols=172 Identities=9% Similarity=0.003 Sum_probs=117.7
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC-C-CHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDKMR-GPDTCSALLHSYVQN-K-KSAEA 159 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~-~~~~A 159 (510)
.+..++|+++++.+...+ |.+..+|+.-..++...| .+++++++++.+....| +..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344567888888888775 666677777777777777 48888888888877766 356676666655555 5 77888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC--------cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-------
Q 010458 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--------KVPQMLQELKKNTSPDVVTYNLWLAACASQND------- 224 (510)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 224 (510)
+++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+.|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 8888888876533 6667766666666666666 77777777777766677777777777766665
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566777776666543 3456666655555555544
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.5e-06 Score=78.71 Aligned_cols=244 Identities=10% Similarity=0.062 Sum_probs=124.2
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM-E-LPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~ 266 (510)
..++|+++++++....+.+..+|+.-..++...+ ++++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3345666666666665556666666666665555 3666666666665543 23455555554444444 4 55666666
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
++++.+..++ +..+|+.-.-++.+.+.++. .+ ...+.++++.++++.+..+.
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhCCC
Confidence 6666655443 45555544444444333330 00 00011444444444433321
Q ss_pred CCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-------------------
Q 010458 347 GDPRVPNILLAAYINRNQ-------LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM------------------- 400 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~------------------- 400 (510)
|...|+.....+.+.++ ++++++.++++....+. |...|+.+-..+.+.|..
T Consensus 200 -N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 200 -NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 33444444444444333 45555555555554332 444555444444443332
Q ss_pred -HHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q 010458 401 -EKVLECFKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRT 464 (510)
Q Consensus 401 -~~a~~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~ 464 (510)
....++...+.... ....+++..+..+++.|...|+.++|.++++.+. +.+|....-|+..++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 12222222222210 0114677788888888888888888999988886 4455556666655543
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=5.7e-07 Score=81.12 Aligned_cols=162 Identities=10% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-----hhHHH
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCR-KNR----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTC 319 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 319 (510)
.+..+...|++++|...+++..+.... |+. ..+..+...+...+++++|+..++++.......+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355666677777777777776653211 111 12223445555556666666666666553221111 13555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----cCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWESI-----SGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTK----GIKPC-YTTWE 388 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 388 (510)
+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555556666666666666555521 0000 1123444555555555555555555544421 11111 23444
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHh
Q 010458 389 LLTWGYLKKGQ-MEKVLECFKKAI 411 (510)
Q Consensus 389 ~l~~~~~~~~~-~~~a~~~~~~~~ 411 (510)
.+..++.+.|+ +++|.+.+++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44555555552 355555554444
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=1.3e-07 Score=72.62 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.+. .+.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHH
Confidence 34566677777788888888888888776532 35667777888888888888888888888763 244667777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
..+...|++++|...++++.+..+.++..+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888877777777777776665543
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=2e-07 Score=84.10 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCCC-h------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-Cc----chHHHH
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMRG-P------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CP----LPYNHM 181 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~----~~~~~l 181 (510)
+..+...|++++|...+++.....+. + ..+..+...+...|++++|+..|++..+..... +. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45556666666666666665543221 1 122234455555566666666666665532211 11 134444
Q ss_pred HHHHHhCCCcCcHHHHHHHHH
Q 010458 182 LNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~ 202 (510)
...|...|++++|...|++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555554443
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=2.6e-07 Score=78.86 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
..+...+...|++++|...|+++. .+++.++..+...+...|++++|...|++..+.. +.+...|..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334445555556666666655553 2345555555555666666666666665555543 1234455555555555666
Q ss_pred cCcHHHHHHHHHhCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 191 LDKVPQMLQELKKNTSPDV----------------VTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
+++|.+.|++..+..+.+. .++..+..++...|++++|...|++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666555555432222 566677777777777777777777776653
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-07 Score=74.08 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|+..++++.+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHH
Confidence 3455677777888888888888888888776432 6677888888888888888888888888863 23457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
..++.+.|++++|...+++..+..+.+...+..+...+...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777777777777777776653
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=3.3e-08 Score=88.58 Aligned_cols=193 Identities=10% Similarity=-0.023 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
.+...+..+...+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..++++.+..|+ ...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356678888889999999999999999998875 668888999999999999999999999998888764 77888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
.++...|++++|...|+...+.+ |+. ..+...+....+. .++...........+++......+... ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 99999999999999998887654 221 1111111111111 111111111112233344444433332 257777
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDW-ISYSTLTSLYIKM-ELPEKAATTLKEMEK 272 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 272 (510)
+|.+.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 787777776654 3333 2333333333333 556677777776654
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=5.5e-07 Score=76.80 Aligned_cols=128 Identities=18% Similarity=0.084 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 4455566667777777777776552 456667777777777777777777777777766433 56667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMN---------------DAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
.|++++|...|++......... ...+..+..++...|++++|...|+...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777766422111 1456666667777777777777777776543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=3.7e-07 Score=82.37 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-C----cc
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRG-------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-C----PL 176 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~----~~ 176 (510)
.+...+..+...|++++|.+.++...+..+. ...+..+...+...|++++|+..+++..+..... + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444556666777777777776655444221 1223334455566667777777766665432110 1 12
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhC---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKN---TSPD----VVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
+|+.+...|...|++++|...|++..+. .+.+ ..++..+..+|...|++++|...+++.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455555555555555555544321 1111 134444444444444444444444443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.3e-06 Score=78.72 Aligned_cols=169 Identities=10% Similarity=-0.029 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 350 (510)
.+...+..+...|++++|.+.+++........+. ..+..+...+...|++++|...+++..+.... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666677777777777666554221111 11333445566777888888888877653211 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--CCCC-CH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVT---KGIK-P--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVP-DH 421 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p-~~ 421 (510)
+++.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|+.+++++++... +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677788888888888888888888762 2111 1 125778888889999999999999988875310 1111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 010458 422 RLITAAYNKLEEQGDIDGA-EHLLVTLRN 449 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 449 (510)
.++..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777777653
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=5.5e-06 Score=74.67 Aligned_cols=251 Identities=10% Similarity=0.059 Sum_probs=123.5
Q ss_pred HhCCCcC-cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 186 ISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 186 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
.+.|.++ +|++++..+....+.+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555 56777777776655566666655444433332 344444444444332 22344444444444
Q ss_pred HhcC--ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 010458 255 IKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331 (510)
Q Consensus 255 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (510)
.+.| ++++++.+++.+.+..+. |...|+.-..++...|. ++++++.++.+....+. |...|+.....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 244555555555544333 44444444444444444 34444444444443221 3333333333222221000
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCH
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-----------GQM 400 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~ 400 (510)
.+ ++ ..-...+.++++++.+.+.....+. |...|+-+-..+.+. +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 0000003456666777766665433 555555444444433 346
Q ss_pred HHHHHHHHHHhhccCCCCCCH-HHHHHHH---HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 401 EKVLECFKKAIGSVRKWVPDH-RLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
+++++.++++.+. .|+. ..+..++ ......|..+++...+.++.+.+|....-|.-+...+
T Consensus 255 ~~el~~~~elle~----~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 255 QSELESCKELQEL----EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7888888888854 4553 2222221 1222457788888999999988887666676665544
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=3.2e-07 Score=71.08 Aligned_cols=118 Identities=11% Similarity=-0.040 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 34556666677777777777777777776532 25667777777777788888888888877753 233466777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.++...|++++|...+++..+..+.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 778888888888888888877777777777777777776664
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=2e-07 Score=77.01 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=89.4
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKMELP--EK 262 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 262 (510)
...|++++|...+++..+..+.+...+..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356778888888888777766677888888888888888888888888876653 3356677777777 6778887 88
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
|...+++..+..+. +...+..+...+...|++++|...|+++...
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877544 5667777888888888888888888888774
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=1.1e-07 Score=85.03 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|...+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445556666666667777777777666665333 556666666667777777777777766655321 13455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
++...|++++|...|+...+..+. +...+...+....+. ..+.. +..........+......+. .+ ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 667777777777777666653321 111111112111111 11111 11122222233333333332 22 2577777
Q ss_pred HHHHHHHHhhccCCCCCCHHH-HHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 010458 403 VLECFKKAIGSVRKWVPDHRL-ITAAYNKLEEQ-GDIDGAEHLLVTLRN 449 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~ 449 (510)
|++.++++.+. .|+... ...+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG----HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT----TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87777777742 454433 33333334443 567778888876654
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=1.9e-07 Score=72.12 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.++. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444444444444444444444444332 223444444444444444444444444444444322 3444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|+..|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444444
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=6.1e-08 Score=84.82 Aligned_cols=198 Identities=9% Similarity=-0.066 Sum_probs=137.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHhcCCCCh--------------
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSL-------LSLYTNMGYKDEVLRIWKKMMSLFAKMND-------------- 314 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 314 (510)
..++...|.+.|.++.+..+. ....|..+ ...+...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888877554 56667666 4555555555555555544433 22211
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 010458 315 --------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC--Y 384 (510)
Q Consensus 315 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 384 (510)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345667788899999999998877543 322255566668888999999999998665431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
..+..+..++...|++++|++.|+++... ...|. .........++.+.|+.++|..+|+++...+|. ..++..|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 36777888899999999999999999863 33253 446777788899999999999999999998887 66666553
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=2e-07 Score=74.36 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSY 150 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (510)
..+..+...+.+.|++++|+..|+.+.+.+ |.++..|..+..++...|++++|+..|+++....|+ +..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 345555556666666666666666666554 555566666666666666666666666666555543 55566666666
Q ss_pred HhCCCHHHHHHHHHHHHhCC
Q 010458 151 VQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~ 170 (510)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=3.5e-07 Score=74.36 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 123344444444444444444444444444443222 33344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~ 307 (510)
.|++++|...++++..
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444444
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=3.5e-08 Score=90.92 Aligned_cols=164 Identities=9% Similarity=0.016 Sum_probs=90.1
Q ss_pred hcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 198 (510)
.+++++|...++...+..| +...+..+...+.+.|++++|...|++..+.. |+...+ ..+.+.+ .
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~ 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQK-A 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHH-H
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHH-H
Confidence 4556667766666655444 36778888888999999999999999888765 333100 0000000 0
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q 010458 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 278 (510)
.. -...+|..+..++.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +
T Consensus 192 ~~------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~ 263 (336)
T 1p5q_A 192 QA------LRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-N 263 (336)
T ss_dssp HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-C
T ss_pred HH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 00 013445555555555555555555555554442 234455555555555555555555555555554332 4
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 010458 279 RVAYSSLLSLYTNMGYKDEV-LRIWKKM 305 (510)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 305 (510)
...+..+..++...|+.+++ ...|+.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555 3344444
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=4.5e-08 Score=78.12 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=76.5
Q ss_pred HhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh
Q 010458 131 ENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 131 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 209 (510)
+++....| +...+..+...+.+.|++++|...|+...+... .+...|..+..++...|++++|+..|++..+..+.+.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 33444444 356677777777788888888888887777652 2566777777777777777777777777777666677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
..|..+..++...|++++|...|++..+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777664
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6.2e-07 Score=72.89 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 395 (510)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+... .+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555555666666666666666665433 22445555566666666666666666666655432 24455555666666
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLI--TAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
..|++++|...|+++.+. .+.+...+ ...+..+...|++++|...++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666542 11223333 22222345556666666655544
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=3.7e-07 Score=71.03 Aligned_cols=92 Identities=15% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
.+...+...|++++|...|++..+..+.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 333333334444444444443333322333334444444444444444444444433321 1223333334444444444
Q ss_pred hHHHHHHHHHHHH
Q 010458 260 PEKAATTLKEMEK 272 (510)
Q Consensus 260 ~~~A~~~~~~~~~ 272 (510)
+++|.+.|++..+
T Consensus 100 ~~~A~~~~~~~~~ 112 (133)
T 2lni_A 100 YTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=2.5e-07 Score=78.21 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLV 376 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~ 376 (510)
.+...+...|++++|...+++..
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444444444444444444433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=4.5e-07 Score=76.59 Aligned_cols=63 Identities=8% Similarity=-0.050 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
.+..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.++++.+.
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345555566666666666666665543100 011 223566777777888888888888877764
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=2e-08 Score=92.54 Aligned_cols=141 Identities=9% Similarity=-0.084 Sum_probs=86.9
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----------------hhHHHHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----------------DTCSALLH 148 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~ 148 (510)
+++++|++.++...+.. |.....+..+...+.+.|++++|+..|++.....|+. .+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44555666665544432 3456677788888888888888888888887765543 55666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+|.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+..+.+..++..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665431 14445555555555666666666666555555444555555555555555555555
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=6e-07 Score=68.78 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 33444444444444444444444443322 123334444444444444444444444444443221 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...++++..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=1.8e-07 Score=74.65 Aligned_cols=99 Identities=11% Similarity=-0.136 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44555555566666666666666666655443 234555556666666666666666666666655433 4555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+|...|++++|...|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665553
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=1.3e-07 Score=75.46 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...|++....++. +...|..+..++...|++++|+..|++++.. .+.+...+..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHH
Confidence 344555666667777777777777777665432 5666666777777777777777777777653 123456666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.++...|++++|...|++..+..+.+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 77777777777777777776665543
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=1e-06 Score=66.65 Aligned_cols=111 Identities=12% Similarity=-0.014 Sum_probs=80.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 3456667777778888888888887776532 25667777777788888888888888887763 2335677777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
++...|++++|...+++..+.++.++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888777776666655544
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=9.6e-07 Score=68.10 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 430 (510)
.+..+...+...|++++|...|++..+..+. +...|..+..++.+.|++++|+..++++++. .+.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 4455566666777777777777777665422 5566777777777777777777777777753 23345666777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHH
Q 010458 431 LEEQGDIDGAEHLLVTLRNAG------HVSTEIYNSLLRT 464 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~ 464 (510)
+...|++++|...|++..+.+ +.+..++..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 777777777777777776666 4455555554443
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=4.7e-07 Score=70.09 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 33344444444444444444444443321 123334444444444444444444444444443221 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...+++...
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=1e-07 Score=80.42 Aligned_cols=171 Identities=7% Similarity=-0.039 Sum_probs=78.3
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 192 (510)
+......|+++.+.+.|+...+..+ ....+..+...+...|++++|...|++..+.. |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 3344455677777766665443322 24566777778888888888888888887643 221100000
Q ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
.....-..+ ...++..+..++...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 78 ~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 78 ILLDKKKNI------EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000000000 12344455555555555555555555554432 23444555555555555666666655555555
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 010458 273 RTCRKNRVAYSSLLSLYTNMGYKDEVL-RIWKKM 305 (510)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~ 305 (510)
..+. +...+..+..++...++.+++. ..+..+
T Consensus 151 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 4445555555555554444444 333333
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=1.4e-07 Score=79.68 Aligned_cols=128 Identities=13% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIK-P--------------CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (510)
+..+...+...|++++|...|++..+.... | ....+..+..+|...|++++|+..++++++.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 117 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--- 117 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 344444555555555555555555543211 0 0256777888888888888888888888863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChH-HHHHHHHhC
Q 010458 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPL-IIVERMQKD 482 (510)
Q Consensus 417 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~-~~~~~m~~~ 482 (510)
.+.+...+..+..++...|++++|...|++..+..+.+..++..+..++...++ ++. ..+..|...
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344677888888888888889999888888888888888888888888877766 333 445555433
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=3e-05 Score=69.92 Aligned_cols=138 Identities=7% Similarity=-0.038 Sum_probs=87.7
Q ss_pred HhccChH-HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 82 RKLKRYK-HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 82 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
.+.|.+. +|+++++.+...+ |.+..+|+.--.++...++ +++++.+++.+....| +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445544 6888888888765 5555666655554444443 5667777777766655 45666666666
Q ss_pred HHhCC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 150 YVQNK--KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 150 ~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
+...+ .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.+.++.+..+.|..+|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 66666 367777777777776533 66667666666666666 36777777777766666777776666555544
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=1.9e-06 Score=71.01 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHH-HHHhcCh--hhHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL-ISKIRGL--SSAENF 129 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~ 129 (510)
++|...+++..+.. +.+...|..+...+...|++++|+..|+.+.+.. |.++..+..+..+ +...|++ ++|...
T Consensus 27 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 27 EAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 67777777776654 5567778888888888888888888888887764 5567777777777 6677887 888888
Q ss_pred HHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 130 FENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 130 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
++.+....|+ ...+..+...+...|++++|...|+...+..
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8887777664 6777778888888888888888888887765
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.5e-06 Score=67.65 Aligned_cols=113 Identities=14% Similarity=-0.039 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 423 (510)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|+..++++.+. .+.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 3455667777788888888888888888875 344 567777888888888899998888888863 2335777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
+..+..++...|++++|...|++..+..+.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888889999999999988888877777776665543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=7.8e-07 Score=70.36 Aligned_cols=99 Identities=12% Similarity=-0.067 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34444455555556666666666666655443 234555555666666666666666666666555433 4455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666655543
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.2e-06 Score=69.25 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+...|++++|...|+++...++. +...|..+..++...|++++|+..|++++.. .+.+...+..+..++
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHH
Confidence 344455555666666666666666554322 4555555666666666666666666666542 122344555566666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|++++|...|++..+..|.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666555443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=9.4e-07 Score=68.27 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--------hhhH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--------PDTC 143 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 143 (510)
.++..+...+.+.|++++|++.|++..+.. |.++..|..+..++...|++++|++.+++..+..|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456677788888888888888888888775 667778888888888888888888888887665432 2356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 178 (510)
..+..++...|++++|++.|++..+.. ||+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHH
Confidence 667777788888888888888776643 554443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=1.5e-06 Score=70.67 Aligned_cols=102 Identities=15% Similarity=-0.049 Sum_probs=67.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+..+...+...|++++|...|++.++.... +...|..+..+|...|++++|+..|+++++. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 34555666666777777777777776665322 5566667777777777777777777777653 2234666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
++...|++++|...|++..+..+.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCch
Confidence 77777777777777777776666543
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=1.9e-06 Score=64.50 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC--CHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP--DHRLIT 425 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p--~~~~~~ 425 (510)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+. .+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 345566666677777777777777777766532 25566667777777777777777777777753 222 466677
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCC
Q 010458 426 AAYNKLEEQ-GDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 426 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 453 (510)
.+..++... |++++|.+.++++....+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777777 7777777777777766654
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.7e-06 Score=66.71 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+..+. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444444555555555555555544432 223444555555555555555555555555544332 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=2.7e-06 Score=66.50 Aligned_cols=101 Identities=15% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
+...+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|...++++++. .+.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHHH
Confidence 3444555556666666666666666666554322 4555666666666666666666666666642 12245556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..++...|++++|...|+++.+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 6666666666666666666654433
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.7e-05 Score=74.33 Aligned_cols=195 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCc----------------chHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD 208 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~ 208 (510)
...+...|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+... ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888775432211 02455566666666666666666655443 1111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC-
Q 010458 209 V----VTYNLWLAACASQNDKETAEKAFLELKK----TKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN- 278 (510)
Q Consensus 209 ~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 278 (510)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..+...|...|++++|..+++++...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222233333344556666666555421 221222 33445555666666666666666655544311111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 279 ----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN----DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 279 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
..++..++..|...|++++|..++++..... ...+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345555555556666666666555544321 1101 1223333444445555555555555444
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=4.4e-06 Score=64.46 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555555555555544332 444455555555555555555555555444
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=3.2e-06 Score=63.84 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3344444444444444444444443322 123344444444444444444444444444443222 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~ 307 (510)
.|++++|...+++...
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.3e-06 Score=65.33 Aligned_cols=99 Identities=11% Similarity=-0.009 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC---hhhHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSAL 146 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l 146 (510)
+...|..+...+...|++++|+..|+...+.. |.+...+..+...+...|++++|...+++..+..|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34455566666667777777777777766653 445566666666666677777777776666665443 5566666
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHhCC
Q 010458 147 LHSYVQN-KKSAEAEALMEKMSECG 170 (510)
Q Consensus 147 ~~~~~~~-~~~~~A~~~~~~~~~~~ 170 (510)
...+... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6666666 66677766666666554
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=1.1e-06 Score=67.91 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--------hhh
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--------PDT 142 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~ 142 (510)
...|..+...+...|++++|+..|+...+.. |.++..+..+...+...|++++|...++.+....|+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467778888888999999999999988764 667788888888888999999999998887665432 667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
+..+...+...|++++|.+.|+...+.. |+...+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 7788888888899999999988888754 555555444443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-05 Score=76.54 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CCh
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDW----------------ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNR 279 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 279 (510)
..+.+.|++++|.+.|.++.+....... ..+..++..|...|++++|.+.+.++...-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4455666777777777666554321110 12445556666666666666666555443111 111
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--
Q 010458 280 ----VAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-- 348 (510)
Q Consensus 280 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 348 (510)
.+.+.+...+...|+++++..+++..... +..+. ..++..+...+...|++++|..+++.+...-...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11222223333445556666555554332 11111 12344555555555555555555555443211111
Q ss_pred ---cchHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 349 ---PRVPNILLAAYINRNQLEMAESFYNRLVTK--GI-KPC---YTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 349 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..++..++..|...|++++|..++++.... .. .|. ...+..+...+...+++++|...|.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223444555555555555555555554421 01 110 1233334444445555555555555544
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=6.8e-06 Score=63.37 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAA 427 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l 427 (510)
+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++++........++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44455555555666666666665555432 244555555556666666666666666655431111112 4455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
..++...|++++|...|+++.+..+ ++..+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 6666666666666666666665544 344443333
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=2.8e-06 Score=64.90 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+.+.|++++|...|++.++..+. +...|..+..++...|++++|+..|+++++. -+-+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 445556666777777777777777765432 5666667777777777777777777777753 122455666777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|++++|...++++.+.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 7777777777777777666554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.5e-06 Score=66.50 Aligned_cols=96 Identities=10% Similarity=-0.159 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
.+..+...+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..|++..+..| ++..+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35556677778888888888888888765 66778888888888888888888888888877766 4677788888888
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010458 152 QNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~ 170 (510)
..|++++|+..|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877653
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.8e-06 Score=66.59 Aligned_cols=98 Identities=12% Similarity=-0.084 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSA 145 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 145 (510)
+...+..+...+...|++++|+..|+...+.. |.+ ...+..+...+...|++++|+..+++.....| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44555555555566666666666666655442 222 34455555555555555555555555544433 2444555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 146 LLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=1.2e-05 Score=61.93 Aligned_cols=100 Identities=9% Similarity=0.010 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITA 426 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~ 426 (510)
.+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...|+++++. .|+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR----YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----CCCCcccHHHHHH
Confidence 3455566666777777766666654322 22 35556666666777777777777776653 222 455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
+..++...|++++|...|+++.+..|.++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 66677777777777777777766665554443
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=1.1e-05 Score=65.51 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666666666677777777776665543 235566666666677777777777777766665433 4566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 677777777777777666654
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=4.9e-06 Score=65.02 Aligned_cols=100 Identities=14% Similarity=-0.025 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
+.+...|..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|...++.+....|+ +..+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3456677777777888888888888888777764 556777777777777888888888887777766553 6677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777778888887777776654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=6.8e-06 Score=63.41 Aligned_cols=92 Identities=15% Similarity=0.063 Sum_probs=49.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHH
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALLH 148 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~ 148 (510)
.+...+...|++++|+..|+.+.+.. |.++ ..+..+..++...|++++|...|+.+....|+ +.++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555566666666666555542 2233 34555555555556666665555555544432 344455555
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 010458 149 SYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~ 169 (510)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=1.1e-06 Score=84.62 Aligned_cols=159 Identities=9% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 119 KIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
..+++++|...|+......| ....|..+...+.+.|++++|...|++..+.. |+...+. ++ .
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~------------~~---~ 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLS------------EK---E 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC------------HH---H
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCC------------hH---H
Confidence 33456666666665554433 35678888888999999999999999888753 3321100 00 0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
-..... -...+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+..+.
T Consensus 309 ~~~~~~---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~- 383 (457)
T 1kt0_A 309 SKASES---FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ- 383 (457)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 000000 023455555666666666666666666655543 234555566666666666666666666666655333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
+...+..+..++...++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555543
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=4e-06 Score=67.88 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-HHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLL 462 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~ 462 (510)
...|..+..+|.+.|++++|+..++++++. .+.+...|..+..++...|++++|...|++..+.+|.++ .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356777788888888888888888888863 234567788888888888888888888888888877765 3343333
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=1.1e-05 Score=64.90 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC---CCHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHR 422 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~ 422 (510)
++..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|.+.++++.+...... ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555555555555555555443110 001 23455566666667777777777666654210110 1133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666677777777777777776654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=1.6e-05 Score=63.83 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555554433110 01 12444455555555555555555555443
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=8e-05 Score=73.29 Aligned_cols=170 Identities=7% Similarity=-0.006 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE----------FEKAENIYDEWESISGTGDPRVPNILLAAYINRN- 363 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 363 (510)
.++|++.++++...++. +...|+.--.++...|+ ++++.+.++.+.+..++ +..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34567777777664221 23345554445555555 78888888888876543 6667777777777788
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc-------
Q 010458 364 -QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ------- 434 (510)
Q Consensus 364 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 434 (510)
+++++...++++.+.+++ |...|+.-...+.+.| .+++++++++++++. .+-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccccc
Confidence 668899999998887655 7788888888888888 888899999888863 344677787777776663
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 435 -------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 -------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+.++++.+.++++...+|.+...|+.+...+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 567999999999999999999999999888888776
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.23 E-value=9.7e-06 Score=77.96 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
..+..+...+.+.|++++|...|++..+........ . -+... +... .....|..+..+|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~------------~~~~~----~~~~----~~~~~~~nla~~~ 327 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-S------------EKESK----ASES----FLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-C------------HHHHH----HHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-C------------hHHHH----HHHH----HHHHHHHHHHHHH
Confidence 446666666777777777777777766543221100 0 00000 0000 0023444455555
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+.|++++|+..++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+..++..+..++.+.|+
T Consensus 328 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5555555555555555542 122344555555555555555555555555555555444455555555554444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=5.1e-06 Score=62.97 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010458 362 RNQLEMAESFYNRLVTKGI--KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 439 (510)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|+..|+++++. .+-+..++..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4556666666666665431 112345566666666666666666666666652 22345566666666666677777
Q ss_pred HHHHHHHHHhCCCCCH
Q 010458 440 AEHLLVTLRNAGHVST 455 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~ 455 (510)
|...+++.....+.++
T Consensus 80 A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 80 GVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhCCCcH
Confidence 7776666666655544
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=1e-05 Score=78.10 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=55.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.+.+.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555432 123445555555555555555555555555554322 34455555555555555555
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNK--LEEQGDIDGAEHLLVT 446 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 446 (510)
|.+.|+++++. .+.+...+..+..+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 55555555542 01112223333322 4455555555555443
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=2.3e-05 Score=63.30 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcc------C----------cccChhhHHHHHHHHHHhcChhhHHHHHHhcc
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQY------D----------IKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 134 (510)
...+......+.+.|++++|+..|+...+.- . .|.....|..+..++.+.|++++|+..++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456777888999999999999999987750 0 12334566677777777777777777777777
Q ss_pred cCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 135 DKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 135 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
...| ++..|..+..+|...|++++|...|+...+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 6655 36677777777777777777777777777654
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=3.8e-06 Score=63.70 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=82.0
Q ss_pred hcCCHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--C
Q 010458 396 KKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--M 471 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 471 (510)
..|++++|+..|+++++. + -+.+...+..+..+|...|++++|...|+++.+.+|.++.++..+..++...|+ +
T Consensus 2 ~~g~~~~A~~~~~~al~~--~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS--GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 468899999999999964 2 233467889999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHhhcCCcccccc
Q 010458 472 PLIIVERMQKD-NVQMDAETQKVLKITSEMPVSEVS 506 (510)
Q Consensus 472 a~~~~~~m~~~-~~~pd~~t~~~l~~~~~~~~~~~~ 506 (510)
|...+++..+. .-.|+...+...+..+....++.+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~~~ 115 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYADKLDETW 115 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988764 333444445555555544444443
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=6.6e-06 Score=79.49 Aligned_cols=118 Identities=7% Similarity=-0.061 Sum_probs=74.4
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 263 (510)
.+.+.|++++|.+.|++..+..+.+..+|..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456666666666666666555566677777777777777777777777776653 33566677777777777777777
Q ss_pred HHHHHHHHHccCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010458 264 ATTLKEMEKRTCRKNRVAYSSLLSL--YTNMGYKDEVLRIWK 303 (510)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 303 (510)
.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777765433 44455555554 666677777777776
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=7e-05 Score=73.70 Aligned_cols=134 Identities=7% Similarity=-0.051 Sum_probs=91.7
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMR-GPDTCSALLHSYVQN 153 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 153 (510)
...++|++.++.+...+ |....+|+.-..++...|+ ++++++.++.+.+..| +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34467788888888875 6677777777777777776 7777777777776655 356666666666677
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010458 154 K--KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 221 (510)
Q Consensus 154 ~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (510)
+ +++++++.++++.+.+.. +..+|+.-...+.+.| .++++++.++++.+..+.|..+|+....++.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 7 567777777777776533 5666766666666666 66667777776666666666666666655544
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=3.1e-05 Score=71.94 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
+...|..+..+|.+.|++++|++.++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456777777777888888888888888753 2335667777777888888888888888888877777777777777
Q ss_pred HHHHHcCC
Q 010458 463 RTYAKAGK 470 (510)
Q Consensus 463 ~~~~~~g~ 470 (510)
..+...++
T Consensus 349 ~~~~~~~~ 356 (370)
T 1ihg_A 349 KVKQKIKA 356 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=8.3e-06 Score=74.99 Aligned_cols=145 Identities=11% Similarity=0.012 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
..+..+...+.+.|++++|...|++..+.. |+.. .+...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345566666777777888888777766532 2211 1112222333222111 13677788888
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---C
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK---M 471 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~ 471 (510)
.+.|++++|+..++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+..++..+......... .
T Consensus 241 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888863 234677888888888888888888888888888777777777776666444333 5
Q ss_pred hHHHHHHHHh
Q 010458 472 PLIIVERMQK 481 (510)
Q Consensus 472 a~~~~~~m~~ 481 (510)
+...|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6667777754
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=5.7e-05 Score=59.55 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc-------Ch-----hhHHHHHHHHHHhcChhhHHHHHHhcccC--
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL-------VS-----GDYAVHLDLISKIRGLSSAENFFENLPDK-- 136 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 136 (510)
...+......+.+.|++++|+..|+...+.. |. +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3446667777888999999999999988864 22 11 26666677777777777777777766665
Q ss_pred -----CCC-hhhH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 137 -----MRG-PDTC----SALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 137 -----~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
.|+ ...| .....++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 4555 6666667777777777777766654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=3.2e-05 Score=71.86 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555556666666666666666666655543 234555555666666666666666666666555332 4444444444
Q ss_pred HHHhcCCHHHH
Q 010458 288 LYTNMGYKDEV 298 (510)
Q Consensus 288 ~~~~~~~~~~a 298 (510)
++...++.+++
T Consensus 350 ~~~~~~~~~~a 360 (370)
T 1ihg_A 350 VKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=8.1e-05 Score=52.97 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
...+..+...+...|++++|+..++++++. .+.+...+..+..++.+.|++++|...+++..+..+.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777788888888888888888763 23456777888888888888888888888888887777778877777
Q ss_pred HHHHcC
Q 010458 464 TYAKAG 469 (510)
Q Consensus 464 ~~~~~g 469 (510)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.6e-05 Score=73.03 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+ ....|..+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHH
Confidence 3445666666777777777777777766543 33221 01111111111111 012455555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH-HHhcCCHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-YTNMGYKDEV 298 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 298 (510)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655442 234555555666666666666666666665544322 33334444333 2233445555
Q ss_pred HHHHHHHHH
Q 010458 299 LRIWKKMMS 307 (510)
Q Consensus 299 ~~~~~~~~~ 307 (510)
..+|+.|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 556655544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=0.00017 Score=56.85 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------c
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDP------D-----WISYSTLTSLYIKMELPEKAATTLKEMEKR-------T 274 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 274 (510)
......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555544332110 1 114445555555555555555555555443 2
Q ss_pred CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 275 CRKNRVAY----SSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 275 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+. +...| .....++...|++++|+..|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 22 33344 4444444455555555555544443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.3e-05 Score=57.54 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------HH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS------TE 456 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~ 456 (510)
+...+..+...+...|++++|++.|+++++. .+.+...+..+..++.+.|++++|...+++..+..+.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3455666666777777777777777777653 23356666777777777777777777777777776665 55
Q ss_pred HHHHHHHHHHHcCC
Q 010458 457 IYNSLLRTYAKAGK 470 (510)
Q Consensus 457 ~~~~l~~~~~~~g~ 470 (510)
.+..+..++...|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 80 LQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666666555
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.88 E-value=4.1e-05 Score=60.20 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=74.2
Q ss_pred HHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh----------hhHHHHHHhcccCCCC-hhhHHHHHHH
Q 010458 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL----------SSAENFFENLPDKMRG-PDTCSALLHS 149 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~-~~~~~~l~~~ 149 (510)
..+.+.+++|+..++...+.+ |.++..|..+..++...+++ ++|+..|++..+..|+ ..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345677888888888888875 77888888888888887765 4888888888887774 6778888888
Q ss_pred HHhCC-----------CHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 150 YVQNK-----------KSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 150 ~~~~~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
|...| ++++|++.|++..+.+ |+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 87664 7888888888877754 66655544443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=0.00016 Score=54.20 Aligned_cols=81 Identities=6% Similarity=-0.052 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++|++.|++..+..+.+...+..+..++...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356666666666655566777777777777777777777777766543 2345666677777777777777777777766
Q ss_pred Hc
Q 010458 272 KR 273 (510)
Q Consensus 272 ~~ 273 (510)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=6.5e-06 Score=61.52 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
...|..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|+..+++.....|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3455556666666666666666666666553 445556666666666666666666666666555443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00073 Score=52.58 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010458 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVL 404 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 404 (510)
++++|.+.|++..+.+ ++... +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666554 22222 5555555566666777777666653 45566666666665 66777777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 452 (510)
++|+++.+. -++..+..+...|.. .++.++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL-----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC-----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777653 345666666666666 6677777777777766653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=0.0001 Score=55.36 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
|...|++..+..+ .+...+..+...+...|++++|+..|+++++. .+.+...+..+..++...|++++|...|++.
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555544332 14445555555555555555555555555542 1223445555555555555555555555555
Q ss_pred HhC
Q 010458 448 RNA 450 (510)
Q Consensus 448 ~~~ 450 (510)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=7.9e-05 Score=71.53 Aligned_cols=97 Identities=8% Similarity=-0.034 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCC-CCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhC-------CC
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSE-----CGF-LKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKN-------TS 206 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 206 (510)
.+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|...|...|++++|..++++..+. ..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444455555555555444444332 110 111 123444555555555555555555443321 11
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 207 P-DVVTYNLWLAACASQNDKETAEKAFLELKK 237 (510)
Q Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 237 (510)
| ...+.+.+..++...+.+++|+.+|.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 123344555566666667777777766654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.00092 Score=52.02 Aligned_cols=12 Identities=25% Similarity=0.025 Sum_probs=4.5
Q ss_pred ChHHHHHHHHHH
Q 010458 259 LPEKAATTLKEM 270 (510)
Q Consensus 259 ~~~~A~~~~~~~ 270 (510)
++++|.+.|++.
T Consensus 76 d~~~A~~~~~~A 87 (138)
T 1klx_A 76 DLRKAAQYYSKA 87 (138)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 333333333333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.00019 Score=50.93 Aligned_cols=79 Identities=9% Similarity=-0.041 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 149 (510)
...+..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|...+++..+..|+ +..+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445556666666666666666666666553 445555666666666666666666666665555442 4444444444
Q ss_pred HH
Q 010458 150 YV 151 (510)
Q Consensus 150 ~~ 151 (510)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.00029 Score=67.65 Aligned_cols=61 Identities=11% Similarity=-0.079 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCR-K-NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
.+++.|...|...|++++|..++++..+. |.. | ...+++.|...|...|++++|..++++.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555555555555555555555554332 111 1 1234455555555555555555555544
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00019 Score=56.44 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhccCCCCC-CHHHHHHHHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ----------MEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 430 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 430 (510)
.+.+++|...++...+.++. +...|..+..++...++ +++|+..|+++++. .| +..+|..+..+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHH
Confidence 34455555555555554322 44445444444444443 34666666666642 33 34566666666
Q ss_pred HHHcC-----------CHHHHHHHHHHHHhCCCCCH
Q 010458 431 LEEQG-----------DIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 431 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 455 (510)
|...| ++++|.+.|+++.+.+|.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 66553 67777777777777766553
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.47 E-value=0.00059 Score=49.61 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
...+..+..+|...|++++|...|++..+.++. +...|..+..+|...|++++|++.|++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555555555555555555544322 33344445555555555555555555444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00049 Score=50.05 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
+-+...+..+...+.+.|++++|+..|+...+.. |.++..|..+..++...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456667777777777777777777777777764 556667777777777777777777777765543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0099 Score=53.84 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL----~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL----RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcChHH
Confidence 3345555555555555677777777777766653 56556666666666677777777777766643 56665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.18 E-value=0.025 Score=51.21 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247 (510)
Q Consensus 173 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 247 (510)
.++.+|..+...+...|++++|...+++..... |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 344555555555555566666666666666553 55555656666666666777766666665554 3444444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.08 E-value=0.0046 Score=44.44 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+...|++++|+..|+++++. .+.+.. .+..+..++...|++++|...|++..+.++.+...
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 344455555555555555532 122334 45555555555555555555555555555544333
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0022 Score=60.40 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccC-----CCC----hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDK-----MRG----PDTCSALLHSYVQNKKSAEAEALMEKM 166 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (510)
+++.++.+|...|++++|+.++++..+. |++ ..+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444444444445555444444443321 221 233444444444444444444444443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0053 Score=43.64 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=29.4
Q ss_pred cChhhHHHHHHHHHHhcC---hhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 105 LVSGDYAVHLDLISKIRG---LSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
.++..+..+..++...++ .++|..++++....+|+ +.....+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 34445555444444432 344444444444555555555555554443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.92 E-value=0.0026 Score=45.77 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..+.+.|++++|...|++..+..+. +.. .+..+..++...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555544322 334 4555555555555555555555555443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0061 Score=57.53 Aligned_cols=84 Identities=7% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HhcChhhHHHHHHhcccC-----CCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHh-----CC-CCCC-cchHHHHH
Q 010458 119 KIRGLSSAENFFENLPDK-----MRG----PDTCSALLHSYVQNKKSAEAEALMEKMSE-----CG-FLKC-PLPYNHML 182 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 182 (510)
..|++++|+.++++..+. +++ ..+++.+..+|...|++++|+.++++... .| ..|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555544322 221 34455555555555555555555554432 11 0111 12355555
Q ss_pred HHHHhCCCcCcHHHHHHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~ 202 (510)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55555666555555555543
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.85 E-value=0.011 Score=43.10 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK----WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
+..-+-.|...+...|++..|..+|+.+++.... -.+...++..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777788888888888777764111 123456777888888888888888888888888777766554
Q ss_pred HHH
Q 010458 459 NSL 461 (510)
Q Consensus 459 ~~l 461 (510)
+.+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 433
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.02 Score=44.47 Aligned_cols=89 Identities=9% Similarity=0.024 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHcCCHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 439 (510)
+..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|+...+. . .| +...+..+.-++.+.|++++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHccCHHH
Confidence 4456666666666554 57777778888888887 556888888888874 2 24 35566777778888899999
Q ss_pred HHHHHHHHHhCCCCCHHH
Q 010458 440 AEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~~~ 457 (510)
|++.++.+.+..|.+...
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999988888876443
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.79 E-value=0.0065 Score=43.18 Aligned_cols=70 Identities=11% Similarity=-0.080 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 68 TVHKYELNRIVRELRKLKR---YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
+.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+...|++++|+..|+.+.+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888887765444 688999999988876 778888888888888999999999999998888766
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.72 E-value=0.047 Score=47.38 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc-CCH
Q 010458 225 KETAEKAFLELKKTKIDPD---WISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM-GYK 295 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 295 (510)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777665 344 45677788888873 88888888888888875543467777778887774 888
Q ss_pred HHHHHHHHHHHHhcCC
Q 010458 296 DEVLRIWKKMMSLFAK 311 (510)
Q Consensus 296 ~~a~~~~~~~~~~~~~ 311 (510)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888876555
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.027 Score=58.33 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=23.9
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
...|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555554322 24455555556666666666666555554
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.63 E-value=0.13 Score=38.39 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
......+......|+-++..+++..+....+|++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444445555555555555555554444455555555555555555555555555555555554
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.60 E-value=0.16 Score=44.17 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=65.6
Q ss_pred hHHHHHHhcccCCCChhhHHHHHH-HHHhC--CC------HHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHh-----
Q 010458 125 SAENFFENLPDKMRGPDTCSALLH-SYVQN--KK------SAEAEALMEKMSECGFLKC---PLPYNHMLNLYIS----- 187 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~------~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----- 187 (510)
.-.+.+.+..+..+....|..++. .++.. |+ ...|...+++..+.. |+ ...|..+...|.+
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~ 216 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESF 216 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTT
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCcc
Confidence 333444444433334556665554 23332 22 355666666666644 44 3466667766766
Q ss_pred CCCcCcHHHHHHHHHhCCCC-ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 010458 188 NGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQ-NDKETAEKAFLELKKTKID 241 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~ 241 (510)
.|+.++|.+.|++..+..+. +..++......++.. |+.+.+.+.+++.......
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 36777777777776665443 366666666666663 6677777777776665544
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.0072 Score=56.98 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC-RKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
.+++.|...|...|++++|+.++++..+. |. .|+ ..+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34455555555555555555555554432 11 111 2234555555555555555555555443
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.54 E-value=3.2e-06 Score=77.77 Aligned_cols=265 Identities=9% Similarity=0.070 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 149 (510)
.+..|..|.++....++..+|++.|=+ ..|+..|..++....+.|++++-.+++....+...++.+=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 345688888888888888888766522 2477788888999999999999999988888776777777888999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
|++.++..+-.+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|+++.|.
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSST
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHH
Confidence 99988865543332 2 27777778888888888888888877775432 233444455555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 010458 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 230 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|-+++-+.+++.....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 32211 22445666666666666666555443333332 1112233445555666666666666554421
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCC------CCcchHHHHHHHHHhcCCHHHHH
Q 010458 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGT------GDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-+.....|+-|.-.|++- ++++..+.++..... +++ -....|..++..|++-.+++.|.
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 222334455555444432 334433333322210 110 12334555666666555555443
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.52 E-value=0.16 Score=37.96 Aligned_cols=140 Identities=18% Similarity=0.102 Sum_probs=91.9
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
...|..++..++..+..... +..-|+.+|.-....-+-+-..++++.+-+ -.|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHH
Confidence 34677788888877776542 445567776666666666666666665543 22221 234444333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
..+-.+- .+.......+..+..+|.-++..+++...+. +.+|++.....+..+|.+.|+..+|.+++.++.+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3332221 1445566677778888888888888888654 5578888888888899999999999999988888
Q ss_pred CCCC
Q 010458 450 AGHV 453 (510)
Q Consensus 450 ~~~~ 453 (510)
.|.+
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8864
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.40 E-value=0.018 Score=54.23 Aligned_cols=88 Identities=13% Similarity=-0.019 Sum_probs=43.8
Q ss_pred HHhcCChHHHHHHHHHHHHcc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCC----hhhHHH
Q 010458 254 YIKMELPEKAATTLKEMEKRT---CRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMN----DAEYTC 319 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ 319 (510)
+.+.|++++|+..+++..+.. ..|+ ..+++.+..+|...|++++|+.+++++... -..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344555566666555554330 1111 234555555666666666666655555432 01111 133555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
+...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666655544
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.30 E-value=1.2 Score=45.74 Aligned_cols=259 Identities=13% Similarity=0.053 Sum_probs=132.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-------CCChhhHHHHHH
Q 010458 217 AACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-------RKNRVAYSSLLS 287 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~ 287 (510)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566778888877776654321 112233334455556666766677777776655321 011112223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 288 LYTNMGY-KDEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+++-.|. -+++.+.+..+..... +... .-..+...+...|+.+....++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2455666666554311 1111 11223334456688888888887766532 1112222333344556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTW--ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.+..+++.+.... .|....- ..+..+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888887641 2222211 23445677788887777788888763 22233333333334455677666666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHHh
Q 010458 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGK---MPLIIVERMQK 481 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~a~~~~~~m~~ 481 (510)
+++.+.+.+-+...--..+.-+....|+ .++.++..+..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665555432222222223333333333 56666666653
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.21 E-value=0.054 Score=42.01 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..+.+-|.+..+.|. ++..+...+..++++++ +.++++.+|++..+.. .| ....+..+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 444555555444443 55555556666666666 4456677777666653 12 34455556666677777777777
Q ss_pred HHHHHHH
Q 010458 301 IWKKMMS 307 (510)
Q Consensus 301 ~~~~~~~ 307 (510)
+++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777666
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.05 Score=56.34 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=86.3
Q ss_pred HhccChHHHHH-HHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHH
Q 010458 82 RKLKRYKHALE-VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160 (510)
Q Consensus 82 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (510)
...+++++|.+ ++..+. +......++..+.+.|..++|.++.+.. ..-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHH
Confidence 45677777765 442211 0223356666667777777777655321 11123345567777777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+.....|-
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 764332 3556777777777777777777777776642 33444445556666655555555444431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++....+|.+.|++++|.+++.++.
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2333444555666666666665554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.09 Score=41.91 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=52.1
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
......|+++.|.++.+.+. +...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.++.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455566666666655441 455666666666666666666666655443 33444444455555444
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
.++-+.....+ -++....++...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333322221 133334444455666666666543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.96 E-value=0.14 Score=38.20 Aligned_cols=97 Identities=7% Similarity=0.008 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhccCCCCC--CHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVP--DHRLITAAYNKL 431 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~ 431 (510)
........+..+.+-|.+....|. |+..+--.+.+++.+.++... ++.+++..... + .| .......+.-++
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHH
Confidence 333344455566666766666554 677777788888888887665 88888888763 2 23 334556677788
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+.|++++|++.++.+.+..|.+..+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999988876443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.91 E-value=0.077 Score=40.61 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
.++.++|.++|+.+++.-+++ ..+|......-.++|+.+.|++++.+....++.+.....+.+.-+-.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNL 140 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhc
Confidence 367888888888887642233 67777777777889999999999999999988888888887776543
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.89 E-value=0.081 Score=38.32 Aligned_cols=64 Identities=9% Similarity=-0.140 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTK------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..+..+...+.+.++++.|...|+...+.. -.+....+..|..++.+.|+++.|...++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455555566666666666665543310 1123445555666666666666666666666554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.42 Score=38.08 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
..|..|.......|+++-|...|.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 344444444444444444444443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.26 E-value=0.28 Score=37.57 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 381 (510)
+|+++|.++|+.+.+.+-. -...|-.....-.++|++..|.+++...+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4555555555555443111 1333444444444556666666666666555544
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.25 E-value=4.7e-06 Score=76.65 Aligned_cols=265 Identities=8% Similarity=0.080 Sum_probs=178.3
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 185 (510)
.+.+|..++.+....+++.+|++.|-+.. |+..|..++.+..+.|.++.-.+.+.-.++.. .++..=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 56778888888888888888877665543 67788888888889999988888877665543 3555557888899
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
++.++..+..+++ ..||..-...+..-|...|.++.|.-+|..+. .|.-|..++.+.|++..|.+
T Consensus 127 Ak~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 127 AKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred HhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence 9988877654332 34676667778888888888888887775442 24456666777888877765
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.-++. .++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|.+++-+.+++......
T Consensus 192 aArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 192 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 43322 3778999999999999998876554433332 22224446667788899999888888776321
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-GIK------PCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
....-+|+.|.-.|++- +.++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 34556788888777765 445544444332221 111 02234666666666666666543
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.93 E-value=3.2 Score=40.90 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEY----TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
.+.+.|...+....... ..+.... ..+.......+...++...+...... ..+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888776543 2233222 22222223334244555555554432 23333333444445567888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...|+.|...... ...-.--+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877653211 222233455567778888888888888764
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.75 E-value=0.58 Score=43.35 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHHHHHh
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQKVLKI 496 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~~l~~ 496 (510)
...++..+...|++++|...+..+....|.+...|..++.++.+.|+ +|++.|++.. +.|+.|+..+-...-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44566777888999999999999988888888899999999999999 8888887764 3599999888655544
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=3.7 Score=38.68 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhC-CCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC--HHHH
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKN-TSP-D----VVTYNLWLAACASQNDKETAEKAFLELK----KTKIDPD--WISY 247 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~--~~~~ 247 (510)
.|...+...|++.+|.+++..+... ... + ...+...++.|...+|+..|..++.++. .....|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444555555555555555555433 111 1 2344445556666666666666665542 1111121 1223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
...+..+...+++.+|-+.|.++.+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455555556666666655555543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.80 E-value=4.5 Score=38.10 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH----hcC
Q 010458 223 NDKETAEKAFLELKK-----TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT----NMG 293 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 293 (510)
++++.|.+.+-.+.+ .+..........++..|...|+++...+.+..+.+..-. -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 667777776655532 223445666777788888888888777766665543111 1122223333222 122
Q ss_pred CHHHHHHHHHHHHHhcCCCChh---------hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-----cchHHHHHHHH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDA---------EYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PRVPNILLAAY 359 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 359 (510)
..+.... ...+.......+.. ....+...+...|++.+|.+++..+...-...+ ...+...++.|
T Consensus 109 ~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2221111 01110000000111 123455556666666666666666653211111 22344455566
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 360 INRNQLEMAESFYNRLVT----KGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666665432 1111111 1344455555566666666666666654
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.71 E-value=7.3 Score=40.19 Aligned_cols=346 Identities=9% Similarity=-0.011 Sum_probs=177.8
Q ss_pred HHHHHHHHhcChhhH-HHH-HHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHh
Q 010458 112 VHLDLISKIRGLSSA-ENF-FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYIS 187 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 187 (510)
.+..++...|-..+. ... .+++.+..+....-....-+....|+.++++.+++.....+-..+. ..-..+.-+...
T Consensus 344 ~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ 423 (963)
T 4ady_A 344 SVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY 423 (963)
T ss_dssp HHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc
Confidence 455666666643322 221 2233332112233333344566778888887777665542101122 222333444555
Q ss_pred CCCcCcHHHHHHHHHhCCC--------CChhHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 010458 188 NGQLDKVPQMLQELKKNTS--------PDVVTYNLWL--AACASQNDKETAEKAFLELKKTKIDPDWISYS--TLTSLYI 255 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~--------~~~~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~ 255 (510)
.|..+++..++........ +....-..+. .++.-.++ +++.+.+..+.... .+...... +|...+.
T Consensus 424 ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~v 501 (963)
T 4ady_A 424 AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhc
Confidence 6655567776666554311 1111122222 22233344 34455555544322 11111122 3344455
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHH
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSL--LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--YTCVISSLVKLGEFE 331 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 331 (510)
-.|+.+....++..+.+.. +......+ .-++...|+.+.+..+.+.+... ..|.... -..+..+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 6677777777777766531 22333333 33444678888888888877653 2222111 123345677788887
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFKKA 410 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 410 (510)
...+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|.. .++++.+..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 7777888877532 2233333344445555677777777777666543 34444444444555545443 5788888888
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQG---------DIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 470 (510)
... +|..+-...+.++...| +....++.+.......-. +...-..+..+....|.
T Consensus 656 ~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 656 TKD-----PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred ccC-----CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 753 55555544444444332 456666655555543333 34555666777777776
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.51 E-value=0.64 Score=34.60 Aligned_cols=84 Identities=10% Similarity=-0.082 Sum_probs=47.2
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhh---HHHHHHhcccCC-C--ChhhHHHHHHHHHhCCCHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS---AENFFENLPDKM-R--GPDTCSALLHSYVQNKKSAE 158 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~ 158 (510)
.....+.+-|......+ +++..+-..+..++.+..+... ++.+++.+...+ | .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34444555555544443 3555555556666665554444 666666666554 3 13344445556667777777
Q ss_pred HHHHHHHHHhCC
Q 010458 159 AEALMEKMSECG 170 (510)
Q Consensus 159 A~~~~~~~~~~~ 170 (510)
|.+.++.+.+..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777777766643
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.29 E-value=1.4 Score=30.95 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-+..+-++.+... .+.|++.+..+.+++|.+.+++..|.++++-++..--....+|..++.-
T Consensus 25 D~~e~rrglN~l~~~--DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGY--DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTS--SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 455677777777766 7888999998889999999999999999888876544444567666654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.06 E-value=2.7 Score=45.19 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 166 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (510)
..++..+...+..+.+.++...... ++...-.+..++...|++++|.+.|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455556666666666665544432 3333344555666677777777777654
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.24 E-value=2.8 Score=31.40 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 379 GIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
+..|+..+--.+.+++.+..+. .+++.+++...+. +-.-....+..+.-++.+.|++++|++..+.+.+..|.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3456666666677777776654 3677777777754 2111344556666778888888888888888888777653
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.78 E-value=6.8 Score=34.89 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH----HHHHhCCCCCCcchHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM----EKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~l~~~ 184 (510)
.|..+..-|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|......++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555666777777777765442 22244455554444332 444455666666555555555
Q ss_pred HHhCCCcCcH-HHHHHHHHh-----C--CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 185 YISNGQLDKV-PQMLQELKK-----N--TSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 185 ~~~~g~~~~a-~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
+.....-+-. .++.+.+.+ . ..-|......+...|.+.+++.+|...|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4443321100 111111111 0 1114455555566666666666665555
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.02 E-value=3.1 Score=31.08 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-+..+-++.+... .+.|++.+....+++|.+.+++..|.++|+-++.+--....+|..++.-
T Consensus 68 D~wElrrglN~l~~~--DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGY--DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTS--SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 444666777777766 7889999999999999999999999999998876654445567776654
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.94 E-value=14 Score=39.68 Aligned_cols=171 Identities=9% Similarity=0.007 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.....++..+...+..+.+.++..... .++..--.+..++...|++++|.+.|++.......+....
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-------- 879 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-------- 879 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC--------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh--------
Confidence 344457777888888888776554322 2444444567788899999999999987654311110000
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh----hhHHHHHHHHHhcCCHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKD 296 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 296 (510)
........+...... ...-..-|..++..+-+.+.++.+.++-+...+.....+. ..|..+.+.+...|+++
T Consensus 880 --~~~~~~~~~~~~~~~--~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 --AVLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp --SSHHHHHHHHHTTTS--CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred --hhhcccccccccccc--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 000010011100000 0112233555666666666666666666555543211111 14666677777777777
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
+|...+-.+..... -...+..++..+|..|..
T Consensus 956 ~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 956 AAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 77666655543221 223455555555554443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.88 E-value=2.9 Score=42.13 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
.-+...|+++-|+++-++++.. .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3345567777777777777642 2334667777777777777777777666655
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.86 E-value=1.2 Score=44.86 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=73.5
Q ss_pred hcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcc----CCCCCC-----------HHH
Q 010458 361 NRNQ-LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ-MEKVLECFKKAIGSV----RKWVPD-----------HRL 423 (510)
Q Consensus 361 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~----~~~~p~-----------~~~ 423 (510)
..++ ++.|..+|+++.+..+.-+......++..+...++ --+|.+++.+.++.. ....+. ...
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 57788888887776322111112223333333332 225555555554310 011111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
...=.+.|...|+++.|+++-++....-|..-.+|..|..+|...|+ .|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 22224556788999999999999999999999999999999999999 787777776
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.58 E-value=1.5 Score=34.32 Aligned_cols=118 Identities=5% Similarity=-0.066 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH-H
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESI-SGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYT-T 386 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~-~ 386 (510)
+..-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.+... .-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444455666677777777666664432 123332 134556666667777777777777654311 111111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...+. .....+. .. ...++...-.-+..+|.+.|++++|+.+++.+..
T Consensus 103 ~~~~~---~~ss~p~----------s~--~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG---NSASTPQ----------SQ--CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc---ccCCCcc----------cc--cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10010 0000000 00 2233455666688899999999999999887643
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.88 E-value=2.4 Score=31.75 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 346 TGDPRVPNILLAAYINRNQ---LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.|++.+--.+..++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444555555443 334555555555543211233444555566666666666666666663
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.55 E-value=1.6 Score=40.36 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCCCChhhH
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCRKNRVAY 282 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~ 282 (510)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+. |+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666777788888877777765543 446667778888888888888888877776542 777766543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.16 E-value=7.1 Score=29.64 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 381 KPCYTTWELLTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
.|+..+--.+.+++.++.+.+ +++.+++..... +-.-.......+.-++.+.|++++|++..+.+.+..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 567777667777777776544 677788777753 2111334555666788888888888888888888888763
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.04 E-value=2.1 Score=33.50 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMEL 99 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 99 (510)
++..+.+++...|++..|...|++..+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456778899999999999999999654
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.30 E-value=2 Score=36.77 Aligned_cols=58 Identities=9% Similarity=-0.060 Sum_probs=35.7
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
.+.+.|++++|++....-.+.. |.+......+++.+|-.|+++.|.+-++...+..|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4455666666666666655553 556666666666666666666666666665555443
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.30 E-value=6.7 Score=27.43 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
....++|..+-+++...+ ....+-..-+..+...|++++|..+.+... .||...|.+|-. .+.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 347788999998888764 122233333456778999999999888877 578888877655 3678888888888
Q ss_pred HHHHhCC
Q 010458 164 EKMSECG 170 (510)
Q Consensus 164 ~~~~~~~ 170 (510)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7887765
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.09 E-value=7 Score=27.40 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
....++|..+-+++...+ ....+-..-+..+...|++++|..+.+... .||...|.+|-.. +.|-.+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 347788888888888764 122223333456778899999999988877 5788888777654 568888888878
Q ss_pred HHHHhCC
Q 010458 164 EKMSECG 170 (510)
Q Consensus 164 ~~~~~~~ 170 (510)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777765
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.07 E-value=11 Score=35.24 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CChhhHH----
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYT---- 318 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~---- 318 (510)
+...+...|.+.|+++.|.+.|.++...-.. .-...+-.+++.+...+++..+...+.++...-.. ++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455677777777777777777777664222 12345566677777777777777777776543111 1211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 319 CVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123356778777777766554
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.18 E-value=8.9 Score=27.01 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
=+..+-++.+....+.|++....+.+++|.+.+++.-|.++|+.++.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666666666554
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.42 E-value=36 Score=33.46 Aligned_cols=49 Identities=4% Similarity=-0.193 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
+..+...|....|...+...... .+......+.......|.++.+....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-----~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-----KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34455667777777777666542 22333334444455566666655444
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.14 E-value=28 Score=31.94 Aligned_cols=93 Identities=10% Similarity=-0.062 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCChhhH----
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKN-----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMNDAEY---- 317 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~---- 317 (510)
-++..|...|++.+|.+++.++.+.-...| ...|..-++.|...+++.++...+....... +.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777777777777777665411112 2234455666777777777777776664431 22333221
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHH
Q 010458 318 TCVISSLV-KLGEFEKAENIYDEWE 341 (510)
Q Consensus 318 ~~l~~~~~-~~~~~~~a~~~~~~~~ 341 (510)
..-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11122344 5677777776665553
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.87 E-value=11 Score=35.23 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=68.9
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHH--
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP--DVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISY-- 247 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~-- 247 (510)
.++..+...|.+.|++++|.+.|.++... ..+ -...+-..++.+...+++..+...+.+... .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36788999999999999999999999876 222 456777888899999999999999888642 3323332211
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234568888888887776554
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.26 E-value=28 Score=30.68 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHH----HHHHHhCCCCCCcchHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL----MEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
.|..+..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34445555666677777776655422 224455665554443 4445556666666666666665
Q ss_pred HHhCCCcC-cHHHHHHHHHh----C-C--CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 185 YISNGQLD-KVPQMLQELKK----N-T--SPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 185 ~~~~g~~~-~a~~~~~~~~~----~-~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
+.....-+ .=.++++.+.+ . . .-++.....+...|.+.+++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 55433222 12233333322 1 1 126667777777777888887777766
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.89 E-value=7.9 Score=33.11 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
....+.|++++|+.....-++..+. |...-..++..+|-.|++++|.+-++...+......|....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 3455778888888888887777543 67777788888888888888888888777542222333334444443
No 266
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=80.01 E-value=17 Score=28.75 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHhc-cChHHHHHHHHHHH
Q 010458 68 TVHKYELNRIVRELRKL-KRYKHALEVCEWME 98 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~ 98 (510)
..+...+..++..+... ........+|+.+-
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D 66 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFD 66 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhC
Confidence 34444444444444322 22334445555543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.78 E-value=17 Score=27.22 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+..+-++.+...++.|++....+.+++|.+.+|+..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455556666667777777777777777777777777777777655 2333444554443
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.76 E-value=32 Score=30.35 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH----HHHHHHHHhcCCCChhhHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL----RIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
.++..=|.+.+++++|++++..-.. .+.+.|+...|- -+++...+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444455666666666666544322 112223333222 233333444555555555555544
Q ss_pred HHhcCCHH-HHHHHHHHHHh----cc--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 324 LVKLGEFE-KAENIYDEWES----IS--GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 324 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
+......+ .=.++++.+++ .+ ..-++.....+...|.+.|++.+|...|-. |-.-+...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence 43322111 11223333332 22 123667788888899999999888876641 111134455555544444
Q ss_pred c---CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 397 K---GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 397 ~---~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
. |...++--+ .-..++ -|.-.|+...|..+++...
T Consensus 178 ~~~~~~~~e~dlf----------------~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 QVDDIEDSTVAEF----------------FSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTTCCCHHHHHHH----------------HHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHH----------------HHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 3 443332221 112222 3446678888888888764
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.20 E-value=11 Score=26.43 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 185 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 185 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
+.+.|++++|..+.+.+ ..||...|-.+.. .+.|-.+++...+..+...
T Consensus 50 LmNrG~Yq~Al~l~~~~---c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL---AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS---CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC---CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444444444443322 1344444433322 2444444444444444333
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.76 E-value=52 Score=30.18 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHccCCCChhhH--
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTK-IDP---DWISYSTLTSLYIKM-ELPEKAATTLKEMEKRTCRKNRVAY-- 282 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-- 282 (510)
.+...+...|.+.|+.++..+++.....-= .-| .......+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345566777777777777777776643210 011 122234556665553 3333344444444432111 22333
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCCCcch
Q 010458 283 ----SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTCVISSLVKLGEFEKAENIYDEWESI--SGTGDPRV 351 (510)
Q Consensus 283 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 351 (510)
..++..|...|++.+|.+++..+.+.-...|. ..+..-+..|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788999999999999999999876333333 23666677888999999999999887652 22244433
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHhhccCCCCC
Q 010458 352 PN----ILLAAYI-NRNQLEMAESFYNRLVTKGIKPC------YTTWELLTWGYLKKGQMEKVLECFK-KAIGSVRKWVP 419 (510)
Q Consensus 352 ~~----~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~p 419 (510)
.. .-+..+. ..+++..|...|-+..+.--... ...|..+. +.. .++..+...++. +.... -..|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~--~~~p 254 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAIT--YSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHT--TCSH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhccccccc--cCCc
Confidence 22 2233455 78999999988877643100111 11232222 222 233222222221 11111 1245
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
....+..++.++ ..+++.+...+++...
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 555566666654 4567777776666553
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.56 E-value=26 Score=29.95 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=10.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
.++.....++.+.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3443334445555555554443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.56 E-value=10 Score=26.50 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 010458 221 SQNDKETAEKAFLELKKT 238 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~ 238 (510)
+.|-.+++...+..+...
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 344444444444444333
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.56 E-value=27 Score=32.43 Aligned_cols=39 Identities=5% Similarity=0.016 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhccChHHHHHHHH
Q 010458 57 ITMRKWKEEGHTVHKYE--LNRIVRELRKLKRYKHALEVCE 95 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 95 (510)
++++.+.+.|..|+... ....+...+..|+.+-+..+++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 45555555555544321 1223344455566554444443
No 274
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=70.99 E-value=46 Score=28.16 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
...++.-+...+.+...+-++...|+.+
T Consensus 228 G~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 228 GVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 3457777888888877887777777654
No 275
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.99 E-value=32 Score=26.11 Aligned_cols=67 Identities=13% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPE---KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
.|+..+--.+..++.++.+.+ +++.+++++.+.++.-.......+.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555445555566655433 4556666666543332344445556666667777777776666666
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.57 E-value=11 Score=32.41 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=8.3
Q ss_pred HHHHHHhCCCHHHHHHH
Q 010458 146 LLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~ 162 (510)
.+...++.|+.+....+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 34445556666544333
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.66 E-value=67 Score=28.57 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFY 372 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~ 372 (510)
+.....+...|.+.+++.+|...|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 333444444455555554444433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.41 E-value=49 Score=26.85 Aligned_cols=53 Identities=13% Similarity=-0.074 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 010458 295 KDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
...+..+|..|...|+.... .-|......+...|++.+|..+|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555555544332 224444445555566666666655555444333
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.70 E-value=38 Score=31.45 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChh--hHHHHHHHHHHhcChhhHHHHHHhcccCC-CChhhHHHHHHHHHhC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSG--DYAVHLDLISKIRGLSSAENFFENLPDKM-RGPDTCSALLHSYVQN 153 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 153 (510)
.+...+..|+.+-+..+++. + ..++.. .....+...+..|+.+-+.-+++.-.... .+..-. +.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~----g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR----G-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT----T-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHc----C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHC
Confidence 35555677777655555543 2 222211 11233445567788777777766533221 122222 233344556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 154 KKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
|+.+-+. .+.+.|..|+.. .++. +...+..|+.+-+..+++.-......+...++ .+...+..|+.+-+..
T Consensus 91 g~~~~v~----~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 91 GHTNMVK----LLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAEL 164 (437)
T ss_dssp TCHHHHH----HHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHH
T ss_pred CCHHHHH----HHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHH
Confidence 7765443 334445444322 2233 33344556655544444432111111222222 2334456677655444
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 231 AFLELKKTKIDPDWIS--YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV---AYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
++ +.|..++... -.+.+...+..|+.+ +++.+.+.|..++.. .++. +...+..|+.+-+..+
T Consensus 165 Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L---- 231 (437)
T 1n11_A 165 LL----ERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSL---- 231 (437)
T ss_dssp HH----HTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHH----
T ss_pred HH----hCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHH----
Confidence 44 4444333211 112344455666654 344444555444332 2222 3334455665544433
Q ss_pred HHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHHHHHHH
Q 010458 306 MSLFAKMND---AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR---VPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 306 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.+.|..++. ...+. +...+..|+.+-+..+ .+.+..++.. -.+ .+...+..|+.+-+..+
T Consensus 232 l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L 297 (437)
T 1n11_A 232 LQYGGSANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVL 297 (437)
T ss_dssp HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHH
T ss_pred HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 344433332 12222 3334456665544433 3344333321 122 23334456666544333
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.65 E-value=78 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLV 376 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~ 376 (510)
..++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555556666666666666554
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.39 E-value=69 Score=27.53 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=4.6
Q ss_pred HhCCCHHHHH
Q 010458 151 VQNKKSAEAE 160 (510)
Q Consensus 151 ~~~~~~~~A~ 160 (510)
+..|+.+-+.
T Consensus 39 ~~~g~~~~v~ 48 (285)
T 3kea_A 39 IADNNVRLVC 48 (285)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3455554433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.80 E-value=20 Score=29.68 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHhccChHHHHHHH
Q 010458 56 AITMRKWKEEGHTVHKYE--LNRIVRELRKLKRYKHALEVC 94 (510)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~ 94 (510)
.++++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 344555555554443221 112344445556654443333
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.65 E-value=66 Score=30.63 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=44.2
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCCh--hH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDV--VT-YNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
..+|.+++.|...+.++.|..+..+..-- ..++. .. +--+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45788889999999999999999987522 11111 11 223456677788999999998887654
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.75 E-value=80 Score=27.72 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCC
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 454 (510)
..++.-|...|+.++|.++++++... .+.+ ..+...+..++-+.++ .+....++..+.+.+..+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p--~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVP--HFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCG--GGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--cchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45566666677777777777766421 1111 2223333334443322 344556666666655554
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.30 E-value=19 Score=29.75 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHHH
Q 010458 359 YINRNQLEMAESFYN 373 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~ 373 (510)
..+.|+.+-+.-+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344555544433333
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=61.96 E-value=48 Score=29.33 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHccCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 265 TTLKEMEKRTCRKNRV---AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND---AEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
.+.+.+.+.|..++.. -.+. +...+..|..+.+..++.. .|..++. .-.+.|. ..+..|+.+- .+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v~ 290 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI----AE 290 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----HH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----HH
Confidence 3444455565554432 2222 3344556666655444331 2222222 2223333 3345666543 34
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
.+++.|..++..+ .+...++.|+.+ +++.+++.|-.||.
T Consensus 291 ~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 291 LLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 4456676666554 333445667654 45566677766664
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.68 E-value=92 Score=28.05 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCH-HHHHHHHH
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVST-EIYNSLLR 463 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~-~~~~~l~~ 463 (510)
...++.-|...++.++|.++++++... .+. ...+...+..++-+.++ .+...+++..+...+..+. .....+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p--~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP--HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT--TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC--cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 567888899999999999999998531 221 12334455555555443 4568888888888887753 33333333
Q ss_pred HHHHcCC------ChHHHHHHHH
Q 010458 464 TYAKAGK------MPLIIVERMQ 480 (510)
Q Consensus 464 ~~~~~g~------~a~~~~~~m~ 480 (510)
.+....+ .|..++.++.
T Consensus 297 vl~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 297 IYNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHHH
Confidence 3333322 4555554443
No 288
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=61.18 E-value=68 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHh
Q 010458 210 VTYNLWLAACAS 221 (510)
Q Consensus 210 ~~~~~l~~~~~~ 221 (510)
.+|.-++..+.+
T Consensus 190 Is~~EF~~~~~~ 201 (224)
T 1s1e_A 190 VTLDEFLESCQE 201 (224)
T ss_dssp EEHHHHHHHHHT
T ss_pred EeHHHHHHHHHh
Confidence 344444444443
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.82 E-value=5.6 Score=37.78 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=66.7
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccC--C-CC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcch--
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDK--M-RG---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP-- 177 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-- 177 (510)
-...++.+++.|...+.+++|..+..+..-. . ++ ..-+--+...+.-.+++.+|.+.+....+.-. ++...
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap-~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP-HNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS-CSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchhhhh
Confidence 4557778888888888888888888876421 1 12 11222345666778888888888877766432 22211
Q ss_pred -------HHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 178 -------YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 178 -------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
|..++..+ .|+..+- .+|..- ........|..+..++ +.|+++.-...++.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~r-~lf~q~--~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPEL-SFFHQS--NMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCCH-HHHTTT--SCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCCh-HHhhch--hHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 12222222 4665442 222210 0011234466666665 67887766655543
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.58 E-value=60 Score=27.20 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=51.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcc-Cccc----ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQY-DIKL----VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
-++.+....++++|++++++..+.- +.+. ........+..-.....-.-+..+.+.+.. ..++......+..+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 4667888899999999888876531 0111 111222333333444444445555555533 344555566667777
Q ss_pred hCCCHHHHHHHHHHHH
Q 010458 152 QNKKSAEAEALMEKMS 167 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~ 167 (510)
+.|+.++|.++|-+..
T Consensus 103 rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNR 118 (235)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHH
Confidence 7777777777775543
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.29 E-value=73 Score=25.82 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCChHHH
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLII 475 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~ 475 (510)
.+...++.++|..|... ++--. ...|......+...|++++|.++|+.-.+.+-.| ...|...+.. .
T Consensus 92 ~~~~~~p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---~~rL~~~~~~-------F 159 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK--GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---YNRLLRSLSN-------Y 159 (202)
T ss_dssp TTCHHHHHHHHHHHHHH--TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS---HHHHHHHHHH-------H
T ss_pred ccccCCHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---HHHHHHHHHH-------H
Confidence 45577899999999887 65443 5567888888999999999999999999888766 3333333322 4
Q ss_pred HHHHHhCCC
Q 010458 476 VERMQKDNV 484 (510)
Q Consensus 476 ~~~m~~~~~ 484 (510)
..+|.+.++
T Consensus 160 ~~R~~~~~~ 168 (202)
T 3esl_A 160 EDRLREMNI 168 (202)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 456666665
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.11 E-value=38 Score=26.34 Aligned_cols=58 Identities=5% Similarity=-0.053 Sum_probs=33.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 361 NRNQLEMAESFYNRLVTKGIKP--CYTTWELLTW------GYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
..|++-+|.++++..-.....+ +...|..||. ...+.|+...|..++.++...+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 3466666666666666543344 3345555555 12346777777777777766433443
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.66 E-value=1e+02 Score=27.03 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCC
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY--KDEVLRIWKKMMSLFAKM 312 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 312 (510)
..++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+...|+-+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45667777778888888777777521111 12223333344433322 344566666666555443
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.48 E-value=60 Score=26.69 Aligned_cols=29 Identities=0% Similarity=-0.126 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCC
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKN 278 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 278 (510)
.+...+..|+.+.+..+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455666776666666665555544433
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.52 E-value=54 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
|......+-..|++.+|.++|+.-.+.
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444444444444444444444444444
No 296
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.44 E-value=87 Score=25.20 Aligned_cols=93 Identities=12% Similarity=-0.093 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
+++...+..+.+ .++...-...+..+.+.|.. .+...+..+... +++......+..+...+..+....+.+.
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 344444444443 34555555556666666553 233333333322 3455555556666666653333333333
Q ss_pred cccCCCChhhHHHHHHHHHhCCC
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKK 155 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~ 155 (510)
+. .+++.+-...+.++.+.++
T Consensus 90 l~--~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 90 LK--DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp TT--CSSHHHHHHHHHHHHHHCC
T ss_pred Hc--CCCHHHHHHHHHHHHHhCc
Confidence 22 2344454555555555554
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.31 E-value=17 Score=30.79 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=14.3
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCC
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLKC 174 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p~ 174 (510)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 4455666666666666555554444
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.75 E-value=99 Score=27.61 Aligned_cols=281 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
...++.=|...||.++|.+.++++......+...........-.+....+.+..++..+.+.|+-+.......+-..+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCCHHH----HHHHHHHHHHhcCCCChhh---------------------HHHHHHHHHhcCCHHHHHHHHHH--HHhcc
Q 010458 292 MGYKDE----VLRIWKKMMSLFAKMNDAE---------------------YTCVISSLVKLGEFEKAENIYDE--WESIS 344 (510)
Q Consensus 292 ~~~~~~----a~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~~~~a~~~~~~--~~~~~ 344 (510)
..+..- |...+..+...-+.-.... ...++..+.+....+.+.++|.. +.-..
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~l~~ 173 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGLSWKE 173 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCGGG
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCCHHH
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH
Q 010458 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424 (510)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 424 (510)
+-|...- +..+.+..+++.-......-......+-...-..|...+...-..++.....+..... ...++....
T Consensus 174 f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~--~~~~~~~~~ 247 (339)
T 1ug3_A 174 FLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSE--QQIVSNTLV 247 (339)
T ss_dssp TSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCH--HHHTCHHHH
T ss_pred hCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCh--hhCChHHHH
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCHHHHHHHHh
Q 010458 425 TAAYNKLEEQ-----GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK---MPLIIVERMQKDNVQMDAETQKVLKI 496 (510)
Q Consensus 425 ~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~a~~~~~~m~~~~~~pd~~t~~~l~~ 496 (510)
..+..+.++. +......++++. |..++..|...++ .++..++......-.|...-..++..
T Consensus 248 ~~l~~a~~~~~~~~~~~~~~~~~~l~~-----------~~pll~~~~~~~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~ 316 (339)
T 1ug3_A 248 RALMTAVCYSAIIFETPLRVDVAVLKA-----------RAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDA 316 (339)
T ss_dssp HHHHHHHHHHTEECSSSCEECHHHHHH-----------HHHHHHHHCCSHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHH-----------HHHHHHHHcCCcHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q ss_pred hcCCccccccccc
Q 010458 497 TSEMPVSEVSSIF 509 (510)
Q Consensus 497 ~~~~~~~~~~~~~ 509 (510)
-++..+-+-..++
T Consensus 317 LYd~dVi~Eeail 329 (339)
T 1ug3_A 317 LYDEDVVKEDAFY 329 (339)
T ss_dssp HHHTTSSCHHHHH
T ss_pred HhCcchhhHHHHH
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.42 E-value=48 Score=24.62 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~ 455 (510)
....++.-|...|+.++|.+.++++... .+. ...+...+..++-+.++ .+....++..+...+..+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCC--ccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888899999999999999997531 111 22344455555555432 4677788888887777653
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.17 E-value=92 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 416 KWVPDHRLIT--AAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 416 ~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
+.-|....|. .....|...|..++...+|..+++.+|.
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 5678777663 3445678899999999999999887763
No 301
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.10 E-value=74 Score=25.98 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=12.1
Q ss_pred HHHHHhcChhhHHHHHHhcccC
Q 010458 115 DLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
-.|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3445555566666655555544
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.27 E-value=1.5e+02 Score=31.08 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC---------------
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP--------------- 419 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p--------------- 419 (510)
++..+...|..+-|.++. .. .+.+...--.+..+|...|++++|..+|+++-. ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~---gl~~~~~~~~~~~~~~~ll 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFAVLREFQEIA 887 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---TTCSSCCSCGGGHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hcccCcccccchhhhhhcc
Confidence 556666677766554432 21 122333333566778888888888888887764 2211
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CH----HHHHHHHHHHHHcC
Q 010458 420 --------DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-ST----EIYNSLLRTYAKAG 469 (510)
Q Consensus 420 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g 469 (510)
...-|..++..+.+.|-++.+.++-+.+.+.-.. ++ ..|..+.++.+..|
T Consensus 888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124677788888888888888888887764332 32 46777777777655
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.85 E-value=60 Score=25.34 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 228 AEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
..++|..|...|+-.. ..-|......+-..|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444433221 2334444444455555555555555555444333
No 304
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=48.32 E-value=1.4e+02 Score=26.16 Aligned_cols=92 Identities=11% Similarity=-0.008 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 301 IWKKMMSLFAKMNDAE--YTCVISSLVKLGEFEKAENIYDEWESISGTGDPR---VPNILLAAYINRNQLEMAESFYNRL 375 (510)
Q Consensus 301 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 375 (510)
+.+.+.+.|..++... -.+.+...+..|+.+.+..++.. .+..++.. -.+.|. ..+..|+.+ +.+.+
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~L 292 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAELL 292 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHH
Confidence 4444556665554321 12233445667887766555432 23333322 123333 345677765 44556
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 376 VTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 376 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
++.|..+|..+ .+...++.|+.+-+
T Consensus 293 l~~GAd~n~~~---~L~~A~~~~~~~iv 317 (337)
T 4g8k_A 293 CKRGASTDCGD---LVMTARRNYDHSLV 317 (337)
T ss_dssp HTTSCSSTTCC---HHHHHHHTTCHHHH
T ss_pred HHCCCCCCCCC---HHHHHHHcCCHHHH
Confidence 67777776554 23334566776543
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=47.84 E-value=13 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hhcc
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVREL-RKLK 85 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~ 85 (510)
.+|.+.|.+|++..-.++..+|...++.+ ++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 45666666666554444556666666666 4443
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.53 E-value=49 Score=25.46 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCH-HHHHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD--IDGAEHLLVTLRNAGHVST-EIYNSLL 462 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~-~~~~~l~ 462 (510)
....++.-|...|+.++|.+.++++... .+. ...+...+..++-+.++ .+.+..++..+...+..+. .....+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~ 87 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 4677889999999999999999998531 111 23344455555555333 4667888888888877653 2333333
Q ss_pred HHHHHcCC------ChHHHHHHHHhCCCCCCHHHHHHHHh
Q 010458 463 RTYAKAGK------MPLIIVERMQKDNVQMDAETQKVLKI 496 (510)
Q Consensus 463 ~~~~~~g~------~a~~~~~~m~~~~~~pd~~t~~~l~~ 496 (510)
..+....+ .|..++.++...-+.-+..+...+..
T Consensus 88 ~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~ 127 (152)
T 2ion_A 88 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred HHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 33333333 56666666665555555555544444
No 307
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.94 E-value=65 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=31.5
Q ss_pred hhhHHHHHHhcccCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 123 LSSAENFFENLPDKMRGP------DTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 123 ~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
++.|+.+|+.+....++. ..--..+..|.+.|.+++|.++|++.-..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 456888888887764421 12233455788899999999999886654
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.62 E-value=1.2e+02 Score=24.40 Aligned_cols=110 Identities=14% Similarity=-0.086 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 185 (510)
++......+..+...|..+....+.+.+.. +++.+-...+.++...++.+ +...+..+... ++...-...+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL 105 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 455555555555555553333333333322 34545455555555555432 22333333321 3444444455555
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
.+.++.+ +...+..+.. .++..+-...+.++...++
T Consensus 106 ~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 106 GQIGDER-AVEPLIKALK--DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCC
T ss_pred HHhCcHH-HHHHHHHHHh--CCCHHHHHHHHHHHHHcCC
Confidence 5555432 2222222222 2344444444444444444
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.21 E-value=38 Score=28.53 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=14.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
+...++.|+.+-+..++++-...
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCCc
Confidence 34456678887777777765543
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.05 E-value=80 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.01 E-value=67 Score=27.63 Aligned_cols=153 Identities=7% Similarity=-0.020 Sum_probs=64.6
Q ss_pred HHHHHhcChhhHHHHHHhcccCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhCCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQ 190 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 190 (510)
...+..|+.+-+..+++.-.... ++..-++. +...+..|+.+-+.-+++. |..++. .-+.+.+...+..|+
T Consensus 67 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 67 HQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCC
Confidence 34445566665555555422111 11112222 2333455666544444433 332322 222233444445555
Q ss_pred cCcHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 191 LDKVPQMLQELKKNT--SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+ +.+.+.+.. ..+...-.+.+...+..|+.+-+.-+++.-..... .+..-++..+...+..|+. ++.+
T Consensus 142 ~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~ 212 (285)
T 3kea_A 142 VS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQ 212 (285)
T ss_dssp HH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHH
T ss_pred HH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHH
Confidence 43 333333331 11221223334455567777766666655322211 1111111123334455554 3455
Q ss_pred HHHHccCCCChhh
Q 010458 269 EMEKRTCRKNRVA 281 (510)
Q Consensus 269 ~~~~~~~~~~~~~ 281 (510)
.+.+.|..++...
T Consensus 213 ~Ll~~gad~~~~~ 225 (285)
T 3kea_A 213 ALFKYDINIYSAN 225 (285)
T ss_dssp HHTTSCBCSTTTT
T ss_pred HHHHcCCCCCCCC
Confidence 5666677666554
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.11 E-value=94 Score=25.46 Aligned_cols=20 Identities=0% Similarity=-0.149 Sum_probs=9.8
Q ss_pred HHHhccChHHHHHHHHHHHH
Q 010458 80 ELRKLKRYKHALEVCEWMEL 99 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~ 99 (510)
..++.|+.+....+++.+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555554433
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.67 E-value=1.2e+02 Score=24.71 Aligned_cols=19 Identities=0% Similarity=-0.178 Sum_probs=12.1
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 010458 251 TSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~ 269 (510)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4556667777766666654
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.66 E-value=1.1e+02 Score=22.65 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhc
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--MEKVLECFKKAIGS 413 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 413 (510)
....++.-|...|+.++|.+.++++....+. .......+..++-+.+. .+....++..+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 3567889999999999999999998632221 22333444445544432 34566666666654
No 315
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.63 E-value=1.9e+02 Score=25.46 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHcCC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHR--LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--EIYNSLLRTYAKAGK 470 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 470 (510)
+..+.+++-.-+..- ++.|... +...-+....|.+++..|..+-+++.+.++.+. .--..++..+-+.+.
T Consensus 185 ~~kR~lELAAYFT~c--~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 185 NTVRMLELAAYFTKA--KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMAS 258 (325)
T ss_dssp CHHHHHHHHHHGGGS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHhccC--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Confidence 344555555555544 5566544 446667788899999999999999999887543 234445555555544
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.13 E-value=69 Score=25.39 Aligned_cols=15 Identities=7% Similarity=0.286 Sum_probs=7.5
Q ss_pred HHhcChhhHHHHHHh
Q 010458 118 SKIRGLSSAENFFEN 132 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~ 132 (510)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 344555555555543
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.38 E-value=3.6e+02 Score=28.23 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCC-CCCh----hHHHHHHHHHHhcC
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDV----VTYNLWLAACASQN 223 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~ 223 (510)
=|..++..+-+.+.++.+.++-+...+.. ..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36677778888888888887777776652 2232 35666666665544
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.25 E-value=1.7e+02 Score=24.44 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010458 286 LSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+..+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666666666665543
No 319
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=39.10 E-value=1e+02 Score=25.66 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCc-------chHHHHHHHHHhC---CCcCcHHHHHHHHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCP-------LPYNHMLNLYISN---GQLDKVPQMLQELK 202 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 202 (510)
+...+..|+.+....+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCC
Confidence 33445567777666666666666654433 223334333 333 66666666665433
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.87 E-value=1.4e+02 Score=23.15 Aligned_cols=51 Identities=4% Similarity=0.027 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 010458 292 MGYKDEVLRIWKKMMSLFAKM--NDAEYTCVIS-S-----LVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 342 (510)
.|++-+|.++|+........+ ....|..+|+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776654444 3334555555 2 2345777777777766654
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.37 E-value=1.3e+02 Score=22.66 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh
Q 010458 58 TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123 (510)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (510)
+.+.+.+.|.++++. -..++..+...+..-.|.++++.+.+.+ ...+..+....++.+...|-+
T Consensus 9 ~~~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCE
Confidence 344566677776654 3455566666666777888888887764 345666666667777777644
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.82 E-value=1.3e+02 Score=22.73 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=29.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+.|+.++..-. .++..+...+..-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455555543322 344444445555556666666666555545555444445444444
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.63 E-value=61 Score=25.70 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=22.4
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
..+..|+.+....++..-...- -..+.... ..+...+..|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQV-DEVDTEGN-TPLNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCT-TCCCTTSC-CHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHcCCCCC-CCCCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 3455677666666654322000 01111111 223334456666655555554
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.57 E-value=1.5e+02 Score=23.93 Aligned_cols=19 Identities=11% Similarity=-0.097 Sum_probs=10.5
Q ss_pred HHHHHhccChHHHHHHHHH
Q 010458 78 VRELRKLKRYKHALEVCEW 96 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~ 96 (510)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556666666655554
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.47 E-value=1.3e+02 Score=22.92 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=28.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44555544332 22344445555555566666666666555555555444445554444
No 326
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=35.89 E-value=1.5e+02 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=15.1
Q ss_pred cCCcHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 010458 51 AKRSAAITMRKWKEE--GHTVHKYELNRIVREL 81 (510)
Q Consensus 51 ~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~ 81 (510)
+..+..++|+.+-.. .-..+...+..++..+
T Consensus 23 ~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 2l2e_A 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQF 55 (190)
T ss_dssp CSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 445555566655432 2244555555555444
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.67 E-value=1.4e+02 Score=22.75 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=36.2
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
.+.+.|.+++ ..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3555666633 34445666666666667788888888777666666665555566665554
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.91 E-value=90 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 227 TAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
...++|..|...|+-. -..-|......+-..|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444555554444322 23334455555555555555555555555554443
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.15 E-value=79 Score=25.89 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010458 358 AYINRNQLEMAESFYNRLVT 377 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~ 377 (510)
.....|+.+.+.++.+.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33455566666666665554
No 330
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.15 E-value=1.9e+02 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.007 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 010458 325 VKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~ 344 (510)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444433
No 331
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=34.14 E-value=1.7e+02 Score=23.02 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=30.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCChh---hHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCh
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRV---AYSSLLSLYTN-MGYKDEVLRIWKKMMSLFAKMND 314 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 314 (510)
.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 4444555565555555666666666555432 22223222221 22333444555555555554443
No 332
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.75 E-value=2.2e+02 Score=24.07 Aligned_cols=229 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--HhcCCCChhhHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM--SLFAKMNDAEYT 318 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~ 318 (510)
.++...-...+.++.+.|..+....+.+.+... +...-...+.++...+....+..-+-... ..-..++..+-.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010458 319 CVISSLVKLGE-----FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 393 (510)
Q Consensus 319 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 393 (510)
..+.++...+. ...+...+..... .++..+-...+.++...|+ ..+...+..+.. .++...-...+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~a 182 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHHHH
Q ss_pred HHhcC-CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-C
Q 010458 394 YLKKG-QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-M 471 (510)
Q Consensus 394 ~~~~~-~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 471 (510)
+...+ ....+...+..+... ++..+-...+.++.+.|+......+.+.+.... +-...+.++.+.|. .
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~-----vr~~a~~aL~~i~~~~ 252 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT-----VYDDIIEAAGELGDKT 252 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS-----CCHHHHHHHHHHCCGG
T ss_pred HHhhccCcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc-----HHHHHHHHHHhcCchh
Q ss_pred hHHHHHHHHhCCCCCCHHH
Q 010458 472 PLIIVERMQKDNVQMDAET 490 (510)
Q Consensus 472 a~~~~~~m~~~~~~pd~~t 490 (510)
+...+.++.+..-.++...
T Consensus 253 ~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 253 LLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp GHHHHHHHHTTSSCCHHHH
T ss_pred hhHHHHHHHhcCCCcHHHH
No 333
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=32.03 E-value=2.4e+02 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcc---CCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRT---CRKNRVAYSSLLSLYTN-MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 307 (510)
.++...-+.+++++..+.++++.+.+ ...+..-.+.|-.+|-. .|....++.++..+.+
T Consensus 33 ~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieq 95 (260)
T 2npm_A 33 YMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQ 95 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 45566667788888888888777765 56666666666666654 3444445555555443
No 334
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=31.82 E-value=2.4e+02 Score=23.95 Aligned_cols=170 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL-GEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+......+.+..-+.+++++..+..+.+...+...+..--+.+-.+|-.. |....+++++..+.+..-.....-...++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHhhccCC-
Q 010458 357 AAYINR--NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-----------------EKVLECFKKAIGSVRK- 416 (510)
Q Consensus 357 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~~~~- 416 (510)
..|... ..+.....-+-.+++..+-|+..+-.+-+-.+--.|++ +.+.+.|+.+.+. .
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~i--A~ 187 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDI--AM 187 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred --CCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHh
Q 010458 417 --WVPDHRLITAAYNKLE-----EQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 417 --~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 449 (510)
++|+..+...|+--|. -.++.++|.++-++.-+
T Consensus 188 ~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 188 TELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.71 E-value=1.7e+02 Score=25.95 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.5
Q ss_pred hcCCHHHHH
Q 010458 361 NRNQLEMAE 369 (510)
Q Consensus 361 ~~g~~~~A~ 369 (510)
..|+.+-+.
T Consensus 253 ~~g~~~~v~ 261 (364)
T 3ljn_A 253 RAAMVLLTK 261 (364)
T ss_dssp HTCCHHHHH
T ss_pred HhChHHHHH
Confidence 334443333
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.53 E-value=1.6e+02 Score=22.77 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc--cCcccChhhHHHHHHHHHHhcChh
Q 010458 60 RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQ--YDIKLVSGDYAVHLDLISKIRGLS 124 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 124 (510)
+.+.+.|.+++.. -..++..+...+++-.|.++++.+.+. + ...+..+-...++.+.+.|-+.
T Consensus 22 ~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 22 KILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCEE
Confidence 3445567776553 456667777777777888888888765 3 2345666666667777777443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.49 E-value=1.4e+02 Score=22.11 Aligned_cols=63 Identities=13% Similarity=-0.013 Sum_probs=42.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChh
Q 010458 60 RKWKEEGHTVHKYELNRIVRELRKLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (510)
+.|.+.|.++++. -..++..+...+ ..-.|.++++.+.+.+ ...+..+....++.+.+.|-+.
T Consensus 7 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcEE
Confidence 3466678776654 345566666665 6778999999988764 3456666667777787777543
No 338
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.23 E-value=1.9e+02 Score=22.55 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 402 KVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
...++|..|... ++--. ...|......+...|++.+|.++|+.-.+.+-.|..
T Consensus 78 ~p~~if~~L~~~--~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQ--GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHT--TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 356677777776 54433 456677777888888888888888888887766643
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.11 E-value=1.6e+02 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=13.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
+...+..|+.+....+++.+.+.|..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 33445556666555555555555443
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.68 E-value=1.2e+02 Score=22.87 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 234 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 234 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
.+.+.|+.++..- ..++..+...+ .-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3455566555432 23344444444 5566677777766655555555444455554444
No 341
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.65 E-value=2.2e+02 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHcCCC
Q 010458 416 KWVPDHR--LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--EIYNSLLRTYAKAGKM 471 (510)
Q Consensus 416 ~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 471 (510)
++.|... +...-+....+.+++..|-.+-+++.+.++... .--..++..+-+.+..
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~d 250 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTD 250 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCB
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Confidence 4555443 445667778899999999999999999877522 3345566666666553
No 342
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.54 E-value=2.4e+02 Score=23.53 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL-GEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+......+++..-+.++++++....+++...+...+..--+.+-.+|-.. |....+++++..+.+..-.........++
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHhhccC-C
Q 010458 357 AAYINR--NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-----------------EKVLECFKKAIGSVR-K 416 (510)
Q Consensus 357 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~~~-~ 416 (510)
..|... ..+..-..-+-.+++..+-|...+-.+-+-.+--.|++ +.|.+.|+.+.+... .
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred CCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHh
Q 010458 417 WVPDHRLITAAYNKLE-----EQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 417 ~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 449 (510)
++|+..+...|+--|. ..|+.++|.++-++...
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 343
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=30.31 E-value=1.9e+02 Score=22.42 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 010458 211 TYNLWLAACASQNDKETAE 229 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~ 229 (510)
++.-+...+.....+-...
T Consensus 165 ~~~Ef~~~~~~~~~~~~~~ 183 (190)
T 1fpw_A 165 TLDEFREGSKVDPSIIGAL 183 (190)
T ss_dssp EHHHHHHHHHSSTTHHHHH
T ss_pred cHHHHHHHHHhChHHHHHH
Confidence 3444444444444333333
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.18 E-value=1.2e+02 Score=22.89 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChh
Q 010458 59 MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (510)
.+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+ ...+..+....++.+...|-+.
T Consensus 7 ~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTA-SGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcEE
Confidence 34556678777654 344555565556 678889999887764 3456666666777777777543
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.07 E-value=1.4e+02 Score=22.73 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=43.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChh
Q 010458 59 MRKWKEEGHTVHKYELNRIVRELRKLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS 124 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (510)
.+.|.+.|.+++.. -..++..+...+ ++-.|.++++.+.+.+ ...+..+....++.+...|-+.
T Consensus 5 ~~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcEE
Confidence 34566778777655 345556666665 6778999999988764 3456667677778887777543
No 346
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.91 E-value=3.3e+02 Score=25.00 Aligned_cols=165 Identities=7% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhccC---hHHHHHHHHHHHHccCc-ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHH
Q 010458 75 NRIVRELRKLKR---YKHALEVCEWMELQYDI-KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150 (510)
Q Consensus 75 ~~li~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 150 (510)
..++...|..|+ .++|.+.|+.....+.. +.++.....+...-.+. ++..+.+-+.-....++.--..++.++
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~---~~~~~~l~~~y~~s~~~~ek~~ll~aL 277 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS---TEGWDFLYSKYQFSLSSTEKSQIEFAL 277 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS---HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC---HHHHHHHHHHHhcCCCHHHHHHHHHHc
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE----LKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+...+.....++++......+.+.......+........-.+.|++.+.. +.+...++...+..++......-.-+
T Consensus 278 ~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~ 357 (419)
T 3rjo_A 278 CRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTR 357 (419)
T ss_dssp TTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCCCH
Q ss_pred HHHHHHHHHHhCCCCC
Q 010458 227 TAEKAFLELKKTKIDP 242 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~ 242 (510)
+-.+-++...+....+
T Consensus 358 ~~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 358 TRLEEVKGFFSSLKEN 373 (419)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhCccc
No 347
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.58 E-value=4.3e+02 Score=26.20 Aligned_cols=345 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH-------HhcChhhHHHHHHhcccCCCChhhHHHHHH
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS-------KIRGLSSAENFFENLPDKMRGPDTCSALLH 148 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 148 (510)
.+|-.|.+.|++++|.++.++.... +......+...+..++ ...--++...-|++..+..++...|...+-
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~--~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 234 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN--IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVY 234 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG--C-----CHHHHHHHC------------------------------CHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh--HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q ss_pred HHHhCCCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhCCCcCc-------HHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDK-------VPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
...-.-+.. -... .+..+..-|-.+=-.+.+.++-.. .+.-++.......++...= ....++.
T Consensus 235 ~Iig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~-lYf~vLl 305 (661)
T 2qx5_A 235 KLIGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN-YYLQTLL 305 (661)
T ss_dssp HHHHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT-CHHHHHH
T ss_pred HHHhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh-HHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh---cCCHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN---MGYKDE 297 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 297 (510)
-.|+++.|.+++-.. ...+..++...+..|.-.+- =+.+......-...-+..|+..|.+ ..++.+
T Consensus 306 LtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 306 LSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHHHHHHhc-CCCChhhHHHHHHHHHhcCCHHHHH-----------HHHHHHHhccCCCCc------chHHHHHHHH
Q 010458 298 VLRIWKKMMSLF-AKMNDAEYTCVISSLVKLGEFEKAE-----------NIYDEWESISGTGDP------RVPNILLAAY 359 (510)
Q Consensus 298 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~------~~~~~l~~~~ 359 (510)
|.++|-.+...+ ..-.......+-......++++.-. .++++.. .-+..+. ........-+
T Consensus 375 Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~-~li~l~d~~~~~~~i~~~aA~~a 453 (661)
T 2qx5_A 375 AVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQ-PLLHVRDEKEFLHTITEQAARRA 453 (661)
T ss_dssp HHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTC-GGGTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhh-cccccccHHHHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHhhccCC--------
Q 010458 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---------------MEKVLECFKKAIGSVRK-------- 416 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~~~~-------- 416 (510)
...|++++|..+|+...+. .--....+.++.-....-. +...-.-+.+.... .
T Consensus 454 e~~G~~~dAi~LY~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~--~~~~~~~~~ 529 (661)
T 2qx5_A 454 DEDGRIYDSILLYQLAEEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFD--NAGISRQIH 529 (661)
T ss_dssp HHTTCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTT--CHHHHTTSC
T ss_pred HHCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhc--Cchhhhhcc
Q ss_pred --CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 010458 417 --WVPDHRLITAAYNKL--EEQGDIDGAEHLLVTL 447 (510)
Q Consensus 417 --~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 447 (510)
..........++..+ ...|+++.|.+.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.53 E-value=5e+02 Score=26.96 Aligned_cols=24 Identities=4% Similarity=-0.104 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
..++.+++...+.....++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 344444444455544444444443
No 349
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.25 E-value=1.2e+02 Score=21.03 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG-----YLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
..|++-+|.+++++.-.....|....|..+|.. ..+.|+. |..++.++...+...+
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 346666666666665544322333344444432 1234555 6666666655333333
No 350
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=28.65 E-value=2.6e+02 Score=23.34 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=91.2
Q ss_pred CCCCccHHHHHhhhcccCCcHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHccCcccChhhHH
Q 010458 35 AGGRDTLGRRLLSLVYAKRSAAITMRKWKEE--GHTVHKYELNRIVRELRKLK-RYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
...++.+.........+..+...+++.+... .-..+...+..++..+...+ ....+..+|+.+-..+.-..+...+.
T Consensus 73 ~l~~e~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~ 152 (256)
T 2jul_A 73 RHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV 152 (256)
T ss_dssp ---CTHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 3444444433333333446777777776543 23566666666666554332 23456777877755433345566666
Q ss_pred HHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHh----CC-----------CHHHHHHHHHHHHhCCCCCCcc
Q 010458 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ----NK-----------KSAEAEALMEKMSECGFLKCPL 176 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-----------~~~~A~~~~~~~~~~~~~p~~~ 176 (510)
.++..+......++...+|+.+...+.....+.-+...+.. .| .-+.+..+|..+-..+ ....
T Consensus 153 ~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~I 230 (256)
T 2jul_A 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVV 230 (256)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSB
T ss_pred HHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcE
Confidence 66665544344556677777765543332333333333222 23 2355666776665433 2456
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
++.-++..+.+...+-++...|+.+
T Consensus 231 s~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 231 TIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHhhccc
Confidence 8889999888877777777776654
No 351
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.32 E-value=2.2e+02 Score=22.43 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhcC
Q 010458 245 ISYSTLTSLYIKME 258 (510)
Q Consensus 245 ~~~~~l~~~~~~~g 258 (510)
..-...+.++.+.|
T Consensus 153 ~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 153 WVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 33333344444443
No 352
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.29 E-value=1.2e+02 Score=26.99 Aligned_cols=95 Identities=8% Similarity=-0.044 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV---AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (510)
|..-++ .+...+..|+.+-+..++ +.|..++.. .++.| ...+..|+.+-+..+ .+.|..++...-..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYL----ASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHH----HHHCCCCCCBTTBC
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHH-HHHHHcCCHHHHHHH----HHCCCCccccCCCC
Confidence 444444 445556678776555444 445544432 23333 444556666544433 44444444422222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISGTG 347 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (510)
.+...+..|+.+-+..+++.....+..+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 3344556788887777777655545443
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.95 E-value=60 Score=27.57 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=8.8
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 010458 152 QNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~ 169 (510)
+.|+.+....+++...+.
T Consensus 22 ~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 22 AQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HTTCSSTTTTHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHhhc
Confidence 445555555555544433
No 354
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.69 E-value=1.4e+02 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhcCCCChhh
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAE 316 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~ 316 (510)
.-.|.++++.+.+.+...+..|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aT 55 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLAT 55 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHH
Confidence 3344444444444433333333
No 355
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.66 E-value=5.3e+02 Score=26.73 Aligned_cols=161 Identities=7% Similarity=0.000 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 284 SLLSLYTNMGYK---DEVLRIWKKMMSLF----AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 284 ~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
.++...|..|+. +.|.+.|+.....+ +.|+. -..+...-.+.|+.++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 455666666663 45677777665432 23332 233333344567766666666666542 2333345677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKK-GQMEKVLECFKKAIGSVR-KWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 433 (510)
.+++...+.+...++++.....+ +++. .... ++.+.... ...+.|++++.+-.+.+. .+..+...+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 77777778777777777666533 3322 2222 23333332 224556666655433211 233333455666666665
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010458 434 QGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~ 451 (510)
.-..++-.+-++...+..
T Consensus 844 ~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp TCCSHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHhhC
Confidence 555555555555554433
No 356
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=27.57 E-value=2.8e+02 Score=23.36 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL-GEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+..-...+.+..-+.+++++.....+.+...+...+..--+.+-.+|-.. |....+++++..+.+..-.....-...++
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i 82 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMV 82 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCH-----------------HHHHHHHHHHhh---
Q 010458 357 AAYINR--NQLEMAESFYNRLVTKGIKPCYTTW--ELLTWGYLKKGQM-----------------EKVLECFKKAIG--- 412 (510)
Q Consensus 357 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~-----------------~~a~~~~~~~~~--- 412 (510)
..|... ..+.....-+-.+++..+-|...+- .+-+-.+--.|++ +.+.+.|+.+.+
T Consensus 83 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~ 162 (248)
T 3uzd_A 83 RAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHh
Q 010458 413 SVRKWVPDHRLITAAYNKLE-----EQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 413 ~~~~~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 449 (510)
. .++|+..+...|+--|. -.++.++|.++-++...
T Consensus 163 ~--~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 163 E--HMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp H--HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred h--hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 357
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.45 E-value=2.1e+02 Score=21.93 Aligned_cols=50 Identities=6% Similarity=-0.054 Sum_probs=24.2
Q ss_pred HHHHHHHHHHccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 010458 263 AATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (510)
+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555554433322 2234444555555555555555555555544444
No 358
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.29 E-value=2.5e+02 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010458 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 253 (510)
Q Consensus 222 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 253 (510)
-.|.+.|+-++-+|++.|-.|.-..-..++.+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666666655544333333333
No 359
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.11 E-value=1.2e+02 Score=19.20 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHh
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (510)
.++.++..+++..-.++++..++++.+.| ..+.+.|..-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g--~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG--TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 45677777777777778888888887776 45566666666655543
No 360
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=27.08 E-value=2.3e+02 Score=22.35 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 89 HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
....+|+.+-..+.-..+...+..++.........+....+|+.+-.
T Consensus 60 ~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~ 106 (204)
T 1jba_A 60 YVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDK 106 (204)
T ss_dssp HHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCCCeEeHHHHHHHHHHHccCCHHHHHHHHHHHhCC
Confidence 34445555433221123333344333333222233445555555543
No 361
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.89 E-value=2.1e+02 Score=22.04 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=29.6
Q ss_pred HHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhcCC
Q 010458 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL--FAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 329 (510)
.+.|.+++. .-..++..+...++.-.|.++++.+.+. +...+..|..--+..+...|-
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334555332 3344555555555555666666666655 444454444444445555443
No 362
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=26.72 E-value=2.2e+02 Score=21.91 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=15.8
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
.+..+|+.+...+.....+.-++..+.....+-..+..|
T Consensus 141 ~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~ 179 (183)
T 1s6c_A 141 HVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLF 179 (183)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHh
Confidence 344444444333223344444444444433333444333
No 363
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.31 E-value=57 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.4
Q ss_pred ccChHHHHHHHHHHHHccCcccCh
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVS 107 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~ 107 (510)
.-+++.|+..|..+...+.+|++.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458999999999998877677654
No 364
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.27 E-value=1e+02 Score=23.09 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHHH
Q 010458 220 ASQNDKETAEKAFLE 234 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~ 234 (510)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344555555444443
No 365
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.15 E-value=2.6e+02 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=13.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334455666665555566655544
No 366
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.06 E-value=2.8e+02 Score=22.89 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 88 KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
+.+.++|..|...+....-+..|......+...|++.+|..+|+.-.+.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4677888888887643445566777888888888999999888887765
No 367
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.02 E-value=2.6e+02 Score=22.57 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=19.2
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (510)
+..+++.|+-.+-+|.+.| .|.-..-..++-+.-..
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDI 61 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDI 61 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Confidence 3456666666666666666 54444444444444333
No 368
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.20 E-value=2.7e+02 Score=22.44 Aligned_cols=32 Identities=16% Similarity=-0.069 Sum_probs=15.1
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (510)
..+++.|+-.+-+|.+.|-.|.-..-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555555544443333333333
No 369
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.72 E-value=1.5e+02 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcCCCChhh
Q 010458 296 DEVLRIWKKMMSLFAKMNDAE 316 (510)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~ 316 (510)
-.|.++++.+.+.+...+..|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aT 54 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLAT 54 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHH
T ss_pred CCHHHHHHHHHHhCCCCCHHH
Confidence 334444444444333333333
No 370
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.65 E-value=1.5e+02 Score=19.37 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh
Q 010458 60 RKWKEEGHTVHKYELNRIVRELRKLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL 123 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 123 (510)
+.|.+.|..++..- ..++..+...+ ..-.+.++++.+.+.+ ...+..+....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCe
Confidence 44566777776544 45556665554 5666778888876653 345666666677777776654
No 371
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=24.44 E-value=2.9e+02 Score=22.52 Aligned_cols=146 Identities=10% Similarity=0.104 Sum_probs=76.0
Q ss_pred cCCcHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccChH-HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHH
Q 010458 51 AKRSAAITMRKWKEE--GHTVHKYELNRIVRELRKLKRYK-HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127 (510)
Q Consensus 51 ~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 127 (510)
+..+...+++..... .-..+...+..++..+...+... .+..+|+.+-..+.-..+...|...+..+......+...
T Consensus 62 s~~ei~~l~~~F~~~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~ 141 (229)
T 3dd4_A 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLN 141 (229)
T ss_dssp HHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHH
Confidence 445555665555332 22466666666666553333333 344666666444333455666666666655444445566
Q ss_pred HHHHhcccCCC---ChhhHHHHHHHHH-h-----------CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC
Q 010458 128 NFFENLPDKMR---GPDTCSALLHSYV-Q-----------NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 128 ~~~~~~~~~~~---~~~~~~~l~~~~~-~-----------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 192 (510)
.+|+.+-..+. +..-+..++..+. . .-.-+.+..+|..+-..+ -...+|.-++..+.+...+-
T Consensus 142 ~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~~~ 219 (229)
T 3dd4_A 142 WAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKDENIM 219 (229)
T ss_dssp HHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhCHHHH
Confidence 67776654432 2333333333321 1 112256677777775443 34567888887777654444
Q ss_pred cHHHHH
Q 010458 193 KVPQML 198 (510)
Q Consensus 193 ~a~~~~ 198 (510)
++.+.|
T Consensus 220 ~~~~~~ 225 (229)
T 3dd4_A 220 RSMQLF 225 (229)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 444444
No 372
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.24 E-value=3.1e+02 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 010458 391 TWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3456777788888888877775
No 373
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=22.18 E-value=2.9e+02 Score=21.78 Aligned_cols=63 Identities=8% Similarity=0.072 Sum_probs=26.9
Q ss_pred CCCccHHHHHhhhcccCCcHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhc-cChHHHHHHHHHHH
Q 010458 36 GGRDTLGRRLLSLVYAKRSAAITMRKWKEE--GHTVHKYELNRIVRELRKL-KRYKHALEVCEWME 98 (510)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~ 98 (510)
.+++.+...+........+..++++.+-.. .-..+...+..++..+... ...+....+|+.+-
T Consensus 16 l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D 81 (207)
T 2d8n_A 16 LSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFD 81 (207)
T ss_dssp CCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 333344333333333445666666655432 1234444444444433222 22234455555553
No 374
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.05 E-value=3.1e+02 Score=22.07 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=27.3
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 214 LWLAACA---SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 214 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
.+|+++. +-.|.+.|+-.+.+|++.|-.|.-..-..++.+.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455553 4578999999999999988766554444444443
No 375
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.54 E-value=3e+02 Score=21.62 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred cHHHHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHH
Q 010458 40 TLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119 (510)
Q Consensus 40 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (510)
.+...|....++.+.+..+++.+.+.|.--|..--...+....+.|.+.. ..+-..+.++| .+.......+..+..
T Consensus 37 EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KG---I~~~~I~~al~~~~~ 112 (177)
T 3e3v_A 37 EVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKG---IDDNIAEDALILYTD 112 (177)
T ss_dssp HHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTT---CCHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcC---CCHHHHHHHHHhCCc
Q ss_pred hcChhhHHHHHHh---cccCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHH
Q 010458 120 IRGLSSAENFFEN---LPDKMRGPDTCSALLHSYVQNK-KSAEAEALMEKM 166 (510)
Q Consensus 120 ~g~~~~A~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~ 166 (510)
....+.|..+.++ -....++......++..+.+.| .++.+..+++.+
T Consensus 113 ~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 113 KLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
No 376
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.16 E-value=3.1e+02 Score=21.65 Aligned_cols=27 Identities=7% Similarity=-0.165 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.++.+...|...|+.++|...+..--.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 344555556666666666666654433
No 377
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.95 E-value=4.7e+02 Score=23.72 Aligned_cols=88 Identities=18% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 010458 215 WLAACASQNDKETAEKAFLELKKTK----------------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR----- 273 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 273 (510)
++.++....+.+++.++++++...- ..+-......+.+.|...|+.++|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 4556667788889988888763211 1223344566778888899999999999887643
Q ss_pred cCCCC--hhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 274 TCRKN--RVAYSSLLSLYTNMGYKDEVLRIW 302 (510)
Q Consensus 274 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 302 (510)
++.|. ...|......+...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23322 223555566666777776654443
No 378
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.52 E-value=5.2e+02 Score=24.00 Aligned_cols=152 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH--------ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHh
Q 010458 259 LPEKAATTLKEMEK--------RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA----KMNDAEYTCVISSLVK 326 (510)
Q Consensus 259 ~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 326 (510)
..++...+++.... .++..+......++.. ..|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 010458 327 L------------------------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ-----LEMAESFYNRLVT 377 (510)
Q Consensus 327 ~------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~ 377 (510)
. ++.+.|..++..|.+.|..|....-..+..+.-..|. ...|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 378 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.|.+--.......+-.++..-+-..+...++.+..
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Done!